Query 044169
Match_columns 742
No_of_seqs 763 out of 4722
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6E-114 1E-118 999.0 76.3 687 30-741 115-818 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4.1E-93 8.9E-98 805.4 66.9 561 180-741 84-656 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.9E-82 6.2E-87 734.3 59.9 577 55-659 46-625 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.1E-68 4.5E-73 603.9 53.6 474 57-556 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-66 3.1E-71 589.8 52.0 525 34-590 368-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 7.6E-65 1.7E-69 575.7 63.3 504 149-659 367-915 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.6E-33 1.2E-37 330.0 63.9 550 80-655 306-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-32 8.6E-37 322.7 63.8 582 80-693 272-866 (899)
9 PRK11447 cellulose synthase su 100.0 1.7E-24 3.7E-29 257.7 52.3 576 57-654 59-701 (1157)
10 PRK11447 cellulose synthase su 100.0 7.2E-23 1.6E-27 243.9 60.2 547 80-655 123-743 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.2E-20 2.6E-25 214.4 60.1 541 80-654 55-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 3.7E-19 8E-24 202.4 57.3 551 59-655 77-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.3E-20 2.8E-25 189.3 38.7 443 187-643 52-509 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 9.6E-19 2.1E-23 176.0 30.9 418 223-653 53-485 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-17 5.9E-22 184.2 45.3 421 219-653 128-571 (615)
16 KOG2002 TPR-containing nuclear 99.8 2.6E-16 5.7E-21 167.3 45.7 547 85-655 146-747 (1018)
17 KOG2002 TPR-containing nuclear 99.8 2.5E-16 5.4E-21 167.5 44.4 555 80-656 175-801 (1018)
18 PRK11788 tetratricopeptide rep 99.8 4.2E-18 9.1E-23 181.2 31.8 291 363-660 44-354 (389)
19 PRK11788 tetratricopeptide rep 99.8 7.4E-18 1.6E-22 179.3 31.0 297 193-523 45-354 (389)
20 PRK15174 Vi polysaccharide exp 99.8 6.6E-16 1.4E-20 172.4 43.0 353 264-624 16-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 2.6E-15 5.7E-20 171.3 47.8 392 191-624 23-461 (765)
22 PRK10049 pgaA outer membrane p 99.8 1E-15 2.2E-20 174.8 43.1 394 253-654 15-457 (765)
23 TIGR00990 3a0801s09 mitochondr 99.8 2.3E-15 5E-20 168.7 44.9 249 367-623 307-575 (615)
24 PRK15174 Vi polysaccharide exp 99.8 2.1E-15 4.5E-20 168.4 40.7 352 295-654 16-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 3.2E-14 7E-19 159.0 47.7 444 160-627 42-521 (822)
26 KOG4422 Uncharacterized conser 99.8 4.4E-14 9.6E-19 136.9 38.3 435 80-585 126-588 (625)
27 PRK14574 hmsH outer membrane p 99.7 1.1E-13 2.3E-18 154.9 46.7 433 193-654 44-514 (822)
28 KOG4422 Uncharacterized conser 99.7 5.3E-13 1.1E-17 129.6 37.4 418 183-620 116-591 (625)
29 KOG2076 RNA polymerase III tra 99.7 1.1E-11 2.3E-16 132.0 48.3 528 124-654 146-850 (895)
30 KOG0495 HAT repeat protein [RN 99.7 2.5E-11 5.5E-16 124.1 48.9 513 132-666 361-891 (913)
31 KOG0495 HAT repeat protein [RN 99.7 6.4E-11 1.4E-15 121.2 50.7 543 82-664 264-855 (913)
32 KOG2003 TPR repeat-containing 99.6 3.5E-13 7.6E-18 131.4 28.6 498 120-640 165-710 (840)
33 KOG2076 RNA polymerase III tra 99.6 7.5E-11 1.6E-15 125.7 47.3 484 161-647 148-728 (895)
34 KOG1915 Cell cycle control pro 99.6 2.7E-10 5.9E-15 112.5 44.7 537 150-698 71-673 (677)
35 KOG4318 Bicoid mRNA stability 99.6 6.3E-12 1.4E-16 132.8 35.5 523 90-663 11-603 (1088)
36 KOG1915 Cell cycle control pro 99.6 5.6E-11 1.2E-15 117.2 36.4 423 263-696 83-539 (677)
37 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4.1E-19 144.8 11.6 256 392-651 14-275 (280)
38 KOG4318 Bicoid mRNA stability 99.5 5.9E-11 1.3E-15 125.6 36.5 618 18-729 7-792 (1088)
39 KOG2003 TPR repeat-containing 99.5 3.2E-11 7E-16 117.9 30.0 454 189-654 207-690 (840)
40 KOG1173 Anaphase-promoting com 99.5 7.9E-11 1.7E-15 119.1 33.4 486 114-652 13-517 (611)
41 KOG0547 Translocase of outer m 99.5 5.8E-11 1.3E-15 117.7 30.9 213 433-651 338-564 (606)
42 PRK10747 putative protoheme IX 99.5 1.3E-10 2.7E-15 122.6 30.9 276 367-652 97-389 (398)
43 KOG1155 Anaphase-promoting com 99.4 1.5E-09 3.2E-14 107.3 35.0 315 329-652 174-494 (559)
44 PRK10747 putative protoheme IX 99.4 1.6E-10 3.5E-15 121.8 30.3 226 361-620 160-391 (398)
45 KOG1155 Anaphase-promoting com 99.4 3.1E-09 6.7E-14 105.1 36.5 348 227-583 173-532 (559)
46 KOG1126 DNA-binding cell divis 99.4 3.9E-11 8.4E-16 124.0 23.8 277 369-655 334-622 (638)
47 TIGR00540 hemY_coli hemY prote 99.4 1.3E-09 2.8E-14 115.6 33.4 43 474-516 247-292 (409)
48 KOG1126 DNA-binding cell divis 99.4 3.8E-11 8.2E-16 124.1 20.5 246 401-654 334-587 (638)
49 TIGR00540 hemY_coli hemY prote 99.4 1.1E-09 2.3E-14 116.3 31.8 279 366-651 96-397 (409)
50 PF13429 TPR_15: Tetratricopep 99.4 4E-12 8.8E-17 127.9 12.7 182 365-548 88-274 (280)
51 KOG0547 Translocase of outer m 99.4 7.3E-09 1.6E-13 103.2 34.0 406 188-621 120-568 (606)
52 KOG2047 mRNA splicing factor [ 99.4 2E-07 4.3E-12 96.1 44.7 513 118-643 103-713 (835)
53 TIGR02521 type_IV_pilW type IV 99.4 2.9E-10 6.2E-15 111.3 24.4 198 454-652 29-231 (234)
54 KOG3785 Uncharacterized conser 99.3 9.1E-09 2E-13 98.2 32.1 465 127-654 32-515 (557)
55 COG3071 HemY Uncharacterized e 99.3 1.7E-08 3.8E-13 98.5 30.5 285 297-617 97-388 (400)
56 KOG2047 mRNA splicing factor [ 99.3 1.6E-06 3.5E-11 89.6 45.8 559 59-652 26-686 (835)
57 COG2956 Predicted N-acetylgluc 99.3 6.9E-09 1.5E-13 98.1 26.2 223 196-450 48-278 (389)
58 KOG1840 Kinesin light chain [C 99.3 2E-09 4.3E-14 112.8 25.3 231 421-651 199-477 (508)
59 COG2956 Predicted N-acetylgluc 99.3 1.7E-08 3.7E-13 95.5 28.7 268 297-600 48-325 (389)
60 COG3071 HemY Uncharacterized e 99.2 2.1E-08 4.7E-13 97.9 29.8 285 196-514 97-388 (400)
61 KOG4162 Predicted calmodulin-b 99.2 2.8E-07 6E-12 97.4 39.4 399 247-654 317-784 (799)
62 KOG2376 Signal recognition par 99.2 2.1E-07 4.5E-12 95.3 36.2 433 192-648 21-515 (652)
63 KOG1174 Anaphase-promoting com 99.2 1.6E-07 3.4E-12 91.8 33.2 306 316-627 191-508 (564)
64 PF13041 PPR_2: PPR repeat fam 99.2 6.5E-11 1.4E-15 83.2 6.4 50 384-433 1-50 (50)
65 PF13041 PPR_2: PPR repeat fam 99.2 9.7E-11 2.1E-15 82.3 6.9 50 485-534 1-50 (50)
66 PRK12370 invasion protein regu 99.1 2.9E-08 6.2E-13 109.6 28.8 244 401-654 276-536 (553)
67 KOG3785 Uncharacterized conser 99.1 1.3E-06 2.9E-11 83.7 35.4 214 436-658 269-495 (557)
68 TIGR02521 type_IV_pilW type IV 99.1 1.9E-08 4E-13 98.4 24.0 199 386-619 31-232 (234)
69 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-08 3E-13 102.4 22.6 214 435-655 40-267 (296)
70 KOG1129 TPR repeat-containing 99.1 3.5E-09 7.6E-14 99.9 16.6 228 390-654 227-459 (478)
71 KOG1173 Anaphase-promoting com 99.1 1.9E-06 4.1E-11 88.1 36.9 277 354-634 244-533 (611)
72 PF14432 DYW_deaminase: DYW fa 99.1 1.6E-10 3.6E-15 96.3 6.2 72 660-741 2-85 (116)
73 COG3063 PilF Tfp pilus assembl 99.1 1.5E-08 3.3E-13 91.6 17.9 163 489-655 37-204 (250)
74 KOG0985 Vesicle coat protein c 99.1 2E-05 4.4E-10 85.6 43.5 465 155-649 609-1245(1666)
75 KOG1840 Kinesin light chain [C 99.1 2.2E-07 4.7E-12 97.8 28.9 232 359-618 204-478 (508)
76 PRK12370 invasion protein regu 99.0 2.9E-08 6.2E-13 109.6 23.3 209 436-652 276-501 (553)
77 KOG4162 Predicted calmodulin-b 99.0 6.8E-06 1.5E-10 87.2 38.7 440 148-625 319-789 (799)
78 KOG0985 Vesicle coat protein c 99.0 2E-05 4.4E-10 85.6 42.3 236 369-636 1090-1325(1666)
79 KOG1156 N-terminal acetyltrans 99.0 1.4E-05 3E-10 83.3 39.1 101 555-655 366-470 (700)
80 PRK11189 lipoprotein NlpI; Pro 99.0 2.4E-07 5.2E-12 93.4 25.7 226 400-633 40-280 (296)
81 PF12569 NARP1: NMDA receptor- 99.0 1E-05 2.2E-10 86.5 38.7 428 191-649 12-516 (517)
82 KOG1129 TPR repeat-containing 99.0 1.8E-08 3.9E-13 95.3 15.1 232 355-622 224-461 (478)
83 KOG1156 N-terminal acetyltrans 99.0 2.8E-05 6.1E-10 81.1 39.2 422 120-585 11-466 (700)
84 KOG1127 TPR repeat-containing 99.0 7.1E-06 1.5E-10 89.2 35.7 544 84-651 473-1102(1238)
85 KOG3616 Selective LIM binding 98.9 4.5E-06 9.8E-11 87.3 32.8 47 129-178 456-503 (1636)
86 KOG1174 Anaphase-promoting com 98.9 1.1E-05 2.3E-10 79.4 33.1 386 252-654 96-501 (564)
87 KOG2376 Signal recognition par 98.9 3E-05 6.4E-10 80.0 37.7 429 80-544 23-513 (652)
88 KOG3616 Selective LIM binding 98.9 9.8E-06 2.1E-10 84.9 31.4 255 365-652 743-1023(1636)
89 KOG4340 Uncharacterized conser 98.8 1.4E-05 3E-10 75.2 28.1 407 218-652 10-442 (459)
90 KOG0624 dsRNA-activated protei 98.8 2.9E-05 6.3E-10 74.5 30.4 308 257-625 42-376 (504)
91 COG3063 PilF Tfp pilus assembl 98.8 2.8E-06 6.2E-11 77.2 22.4 191 430-623 44-240 (250)
92 PF12569 NARP1: NMDA receptor- 98.8 7.5E-06 1.6E-10 87.4 29.0 124 525-651 197-332 (517)
93 KOG0548 Molecular co-chaperone 98.8 7.4E-06 1.6E-10 83.5 27.1 216 425-654 228-456 (539)
94 KOG3617 WD40 and TPR repeat-co 98.8 0.00023 5E-09 76.1 38.7 82 285-381 913-994 (1416)
95 KOG1127 TPR repeat-containing 98.8 2.7E-05 5.8E-10 84.9 32.3 552 61-648 493-1133(1238)
96 PF04733 Coatomer_E: Coatomer 98.8 7.3E-07 1.6E-11 88.6 19.5 251 364-625 11-271 (290)
97 cd05804 StaR_like StaR_like; a 98.7 3.8E-05 8.2E-10 80.5 33.1 260 393-654 50-337 (355)
98 KOG1125 TPR repeat-containing 98.7 2.5E-07 5.4E-12 94.8 15.5 217 433-652 297-526 (579)
99 PRK04841 transcriptional regul 98.7 0.0013 2.8E-08 78.5 47.3 259 396-654 462-761 (903)
100 PF04733 Coatomer_E: Coatomer 98.7 3E-07 6.5E-12 91.3 13.8 245 394-653 9-265 (290)
101 KOG3617 WD40 and TPR repeat-co 98.7 4.5E-05 9.7E-10 81.3 29.5 259 150-448 724-994 (1416)
102 KOG1070 rRNA processing protei 98.7 4.4E-06 9.6E-11 93.7 23.1 217 453-697 1455-1684(1710)
103 KOG0548 Molecular co-chaperone 98.6 5.2E-05 1.1E-09 77.6 27.2 235 392-637 230-473 (539)
104 TIGR03302 OM_YfiO outer membra 98.6 5.1E-06 1.1E-10 81.3 19.5 181 454-654 31-233 (235)
105 PRK10370 formate-dependent nit 98.6 3.8E-06 8.3E-11 78.7 17.5 148 494-655 23-175 (198)
106 PRK15363 pathogenicity island 98.5 2.4E-06 5.2E-11 74.1 13.7 119 557-698 34-154 (157)
107 PRK15359 type III secretion sy 98.5 5.1E-06 1.1E-10 73.6 16.0 94 561-654 27-122 (144)
108 cd05804 StaR_like StaR_like; a 98.5 0.00037 8.1E-09 73.0 33.0 193 426-619 119-336 (355)
109 KOG4340 Uncharacterized conser 98.5 5.8E-05 1.3E-09 71.1 23.0 339 156-513 14-372 (459)
110 PRK15359 type III secretion sy 98.5 2.8E-06 6.1E-11 75.2 13.8 123 508-636 14-138 (144)
111 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 4.9E-12 58.4 3.8 33 147-179 2-34 (34)
112 PRK04841 transcriptional regul 98.4 0.00042 9.2E-09 82.6 34.4 324 262-585 383-758 (903)
113 PLN02789 farnesyltranstransfer 98.4 9.5E-05 2.1E-09 74.6 23.7 211 436-651 52-300 (320)
114 KOG1128 Uncharacterized conser 98.4 1.2E-05 2.6E-10 85.0 17.3 189 451-654 393-583 (777)
115 PF12854 PPR_1: PPR repeat 98.4 5.8E-07 1.3E-11 56.5 4.4 33 451-483 2-34 (34)
116 COG4783 Putative Zn-dependent 98.4 0.00016 3.4E-09 73.5 23.4 117 532-650 316-434 (484)
117 KOG1128 Uncharacterized conser 98.4 5.5E-05 1.2E-09 80.1 20.9 218 349-585 393-614 (777)
118 KOG1070 rRNA processing protei 98.3 0.00017 3.8E-09 81.5 25.3 226 318-544 1457-1693(1710)
119 COG5010 TadD Flp pilus assembl 98.3 3.5E-05 7.6E-10 71.9 16.8 125 526-652 70-196 (257)
120 KOG0624 dsRNA-activated protei 98.3 0.0026 5.7E-08 61.5 29.4 312 226-585 46-368 (504)
121 COG5010 TadD Flp pilus assembl 98.3 8.4E-05 1.8E-09 69.4 18.2 154 491-647 70-225 (257)
122 KOG3081 Vesicle coat complex C 98.3 0.00066 1.4E-08 63.5 23.7 249 364-623 18-275 (299)
123 KOG1914 mRNA cleavage and poly 98.3 0.0075 1.6E-07 62.2 38.6 210 438-650 310-536 (656)
124 PRK10370 formate-dependent nit 98.3 0.00012 2.6E-09 68.6 19.1 154 463-627 23-181 (198)
125 KOG1914 mRNA cleavage and poly 98.3 0.0084 1.8E-07 61.9 35.7 173 402-575 347-527 (656)
126 TIGR03302 OM_YfiO outer membra 98.3 6.1E-05 1.3E-09 73.6 17.9 181 419-621 31-234 (235)
127 PRK15179 Vi polysaccharide bio 98.2 0.00011 2.3E-09 81.9 21.3 188 423-629 30-227 (694)
128 KOG3060 Uncharacterized conser 98.2 0.00038 8.3E-09 64.5 21.0 171 458-631 54-232 (289)
129 PRK15179 Vi polysaccharide bio 98.2 0.00016 3.5E-09 80.5 22.0 192 390-598 32-230 (694)
130 KOG1125 TPR repeat-containing 98.2 8.7E-05 1.9E-09 76.7 18.1 137 505-644 412-562 (579)
131 TIGR02552 LcrH_SycD type III s 98.2 2.7E-05 5.8E-10 68.6 12.2 96 559-654 18-115 (135)
132 PRK14720 transcript cleavage f 98.2 0.00069 1.5E-08 76.3 25.4 234 353-635 30-268 (906)
133 COG4783 Putative Zn-dependent 98.1 0.00059 1.3E-08 69.5 21.8 145 488-654 307-455 (484)
134 PLN02789 farnesyltranstransfer 98.1 0.00035 7.7E-09 70.5 20.5 187 462-652 43-249 (320)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.2E-05 1.6E-09 76.9 14.6 122 525-651 172-295 (395)
136 TIGR00756 PPR pentatricopeptid 98.0 8.7E-06 1.9E-10 52.0 4.3 35 184-218 1-35 (35)
137 KOG3060 Uncharacterized conser 98.0 0.0011 2.3E-08 61.7 19.0 163 489-655 54-222 (289)
138 TIGR02552 LcrH_SycD type III s 98.0 0.0002 4.3E-09 63.0 13.7 113 509-625 5-120 (135)
139 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3.1E-10 51.0 4.6 35 488-522 1-35 (35)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00031 6.7E-09 72.3 16.5 127 457-586 170-296 (395)
141 KOG3081 Vesicle coat complex C 97.9 0.0033 7.1E-08 59.0 21.0 177 399-584 85-268 (299)
142 KOG2053 Mitochondrial inherita 97.9 0.062 1.3E-06 59.2 41.6 157 424-585 439-606 (932)
143 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.2E-10 50.0 3.9 33 184-216 2-34 (34)
144 PF13812 PPR_3: Pentatricopept 97.9 3.2E-05 6.9E-10 49.0 4.7 33 488-520 2-34 (34)
145 PF09976 TPR_21: Tetratricopep 97.8 0.00065 1.4E-08 60.4 14.7 114 535-649 24-143 (145)
146 KOG2053 Mitochondrial inherita 97.8 0.081 1.8E-06 58.3 39.8 509 80-651 20-606 (932)
147 PRK14720 transcript cleavage f 97.8 0.0072 1.6E-07 68.4 25.4 148 320-498 117-268 (906)
148 cd00189 TPR Tetratricopeptide 97.8 0.00022 4.7E-09 57.8 10.5 93 561-653 3-97 (100)
149 PF04840 Vps16_C: Vps16, C-ter 97.8 0.05 1.1E-06 54.9 29.4 125 458-602 179-303 (319)
150 PF13414 TPR_11: TPR repeat; P 97.8 7E-05 1.5E-09 56.8 6.7 64 589-652 2-66 (69)
151 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00056 1.2E-08 58.4 11.4 92 562-653 6-105 (119)
152 KOG0553 TPR repeat-containing 97.7 0.00049 1.1E-08 65.8 11.2 108 532-641 91-200 (304)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00085 1.8E-08 57.3 12.1 105 525-629 5-115 (119)
154 PF12895 Apc3: Anaphase-promot 97.6 5.2E-05 1.1E-09 60.1 4.0 77 572-649 3-83 (84)
155 PF09976 TPR_21: Tetratricopep 97.6 0.0027 5.8E-08 56.4 15.2 123 491-616 16-144 (145)
156 PLN03088 SGT1, suppressor of 97.6 0.00041 8.8E-09 71.8 11.1 107 529-637 9-117 (356)
157 PF13432 TPR_16: Tetratricopep 97.6 0.00022 4.7E-09 53.3 6.8 59 596-654 3-61 (65)
158 PF01535 PPR: PPR repeat; Int 97.6 7.8E-05 1.7E-09 46.0 3.4 31 184-214 1-31 (31)
159 KOG0553 TPR repeat-containing 97.6 0.00025 5.4E-09 67.7 8.2 88 566-653 89-178 (304)
160 PF07079 DUF1347: Protein of u 97.6 0.12 2.6E-06 52.6 33.5 446 128-595 17-530 (549)
161 PRK15331 chaperone protein Sic 97.5 0.002 4.4E-08 56.5 12.6 90 563-652 42-133 (165)
162 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.7E-09 45.0 3.5 31 488-518 1-31 (31)
163 PF05843 Suf: Suppressor of fo 97.5 0.0035 7.5E-08 62.6 15.5 134 488-624 2-141 (280)
164 PLN03088 SGT1, suppressor of 97.5 0.0019 4.1E-08 66.9 14.0 103 493-599 8-112 (356)
165 PRK02603 photosystem I assembl 97.5 0.0015 3.3E-08 60.1 11.9 80 560-639 37-121 (172)
166 PRK10153 DNA-binding transcrip 97.5 0.0043 9.3E-08 67.2 17.0 140 484-654 334-483 (517)
167 COG4235 Cytochrome c biogenesi 97.5 0.0019 4.2E-08 62.2 12.6 106 554-659 152-262 (287)
168 COG4700 Uncharacterized protei 97.4 0.018 3.9E-07 51.0 16.9 151 498-652 67-221 (251)
169 PRK02603 photosystem I assembl 97.4 0.0045 9.8E-08 56.9 14.2 130 487-639 35-166 (172)
170 CHL00033 ycf3 photosystem I as 97.4 0.0018 3.8E-08 59.4 11.3 93 558-650 35-139 (168)
171 cd00189 TPR Tetratricopeptide 97.4 0.002 4.2E-08 52.0 10.3 89 490-582 3-92 (100)
172 PF13371 TPR_9: Tetratricopept 97.3 0.00076 1.6E-08 51.7 6.9 59 597-655 2-60 (73)
173 PF14559 TPR_19: Tetratricopep 97.3 0.00047 1E-08 52.0 5.3 54 601-654 2-55 (68)
174 KOG2280 Vacuolar assembly/sort 97.3 0.38 8.2E-06 52.2 29.4 342 209-583 423-795 (829)
175 PF13431 TPR_17: Tetratricopep 97.3 0.00023 5E-09 44.6 2.7 32 613-644 2-33 (34)
176 PF13432 TPR_16: Tetratricopep 97.3 0.00063 1.4E-08 50.7 5.5 61 564-624 3-65 (65)
177 PRK10866 outer membrane biogen 97.3 0.085 1.8E-06 51.3 21.5 169 462-651 38-239 (243)
178 CHL00033 ycf3 photosystem I as 97.2 0.017 3.6E-07 52.9 15.5 80 488-569 36-117 (168)
179 PF12895 Apc3: Anaphase-promot 97.2 0.0013 2.8E-08 52.0 6.9 80 500-583 2-83 (84)
180 PF04840 Vps16_C: Vps16, C-ter 97.2 0.32 6.9E-06 49.2 27.1 107 357-480 180-286 (319)
181 KOG1130 Predicted G-alpha GTPa 97.2 0.0034 7.3E-08 62.3 10.6 127 524-650 197-341 (639)
182 KOG0550 Molecular chaperone (D 97.2 0.014 3E-07 58.3 14.7 154 495-654 177-351 (486)
183 PRK15363 pathogenicity island 97.1 0.015 3.3E-07 50.8 13.2 96 459-556 38-137 (157)
184 KOG2041 WD40 repeat protein [G 97.1 0.57 1.2E-05 50.3 26.6 286 232-582 748-1045(1189)
185 COG3898 Uncharacterized membra 97.1 0.39 8.6E-06 48.0 29.9 276 367-653 97-392 (531)
186 COG4700 Uncharacterized protei 97.0 0.016 3.6E-07 51.2 12.5 110 547-656 78-192 (251)
187 PF14559 TPR_19: Tetratricopep 97.0 0.001 2.2E-08 50.1 4.7 50 534-585 3-52 (68)
188 PF13414 TPR_11: TPR repeat; P 97.0 0.0018 3.9E-08 48.9 5.8 65 557-621 2-69 (69)
189 PF05843 Suf: Suppressor of fo 97.0 0.0097 2.1E-07 59.4 12.6 129 523-653 2-136 (280)
190 PF12688 TPR_5: Tetratrico pep 97.0 0.022 4.8E-07 48.0 12.7 93 492-584 6-101 (120)
191 PF10037 MRP-S27: Mitochondria 97.0 0.013 2.8E-07 60.9 13.5 119 148-266 62-186 (429)
192 PF08579 RPM2: Mitochondrial r 97.0 0.0078 1.7E-07 48.7 9.1 79 187-265 29-116 (120)
193 PRK10153 DNA-binding transcrip 96.9 0.037 8.1E-07 60.0 17.2 84 606-696 400-485 (517)
194 KOG0550 Molecular chaperone (D 96.9 0.42 9E-06 48.3 22.0 85 464-550 257-349 (486)
195 PF10037 MRP-S27: Mitochondria 96.9 0.0092 2E-07 61.9 11.4 118 250-367 63-186 (429)
196 KOG0543 FKBP-type peptidyl-pro 96.9 0.0099 2.2E-07 59.6 10.9 85 590-700 257-341 (397)
197 KOG2796 Uncharacterized conser 96.8 0.094 2E-06 49.3 15.9 137 388-526 179-323 (366)
198 PF14938 SNAP: Soluble NSF att 96.8 0.087 1.9E-06 52.8 17.5 110 462-583 100-221 (282)
199 KOG1538 Uncharacterized conser 96.8 0.27 5.8E-06 52.2 20.8 52 524-585 749-800 (1081)
200 KOG2041 WD40 repeat protein [G 96.8 1.1 2.3E-05 48.4 26.4 88 418-514 849-950 (1189)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0069 1.5E-07 62.2 9.4 66 588-653 73-141 (453)
202 PF06239 ECSIT: Evolutionarily 96.7 0.021 4.6E-07 52.4 11.2 98 476-574 34-154 (228)
203 PRK10803 tol-pal system protei 96.7 0.013 2.8E-07 57.3 10.6 61 592-652 182-245 (263)
204 PF06239 ECSIT: Evolutionarily 96.7 0.0098 2.1E-07 54.6 8.9 72 197-268 66-153 (228)
205 PRK10866 outer membrane biogen 96.7 0.41 8.8E-06 46.6 20.9 55 528-582 181-236 (243)
206 PF12688 TPR_5: Tetratrico pep 96.7 0.017 3.7E-07 48.7 9.7 86 564-649 7-100 (120)
207 KOG2280 Vacuolar assembly/sort 96.7 1.3 2.8E-05 48.3 27.4 323 123-478 443-792 (829)
208 PF08579 RPM2: Mitochondrial r 96.7 0.029 6.3E-07 45.5 10.2 79 390-468 29-116 (120)
209 PF13428 TPR_14: Tetratricopep 96.7 0.004 8.6E-08 41.9 4.6 42 591-632 2-43 (44)
210 PF13371 TPR_9: Tetratricopept 96.6 0.0087 1.9E-07 45.7 6.8 65 565-629 2-68 (73)
211 KOG1130 Predicted G-alpha GTPa 96.6 0.073 1.6E-06 53.2 14.3 152 489-640 197-371 (639)
212 PF13281 DUF4071: Domain of un 96.6 0.28 6.1E-06 50.0 19.0 159 461-622 146-337 (374)
213 PF14938 SNAP: Soluble NSF att 96.5 1 2.2E-05 45.1 28.8 153 392-585 100-264 (282)
214 KOG2796 Uncharacterized conser 96.5 0.28 6.1E-06 46.3 16.6 133 490-622 180-318 (366)
215 PRK10803 tol-pal system protei 96.4 0.072 1.6E-06 52.2 13.4 101 525-625 146-252 (263)
216 PF13525 YfiO: Outer membrane 96.2 0.52 1.1E-05 44.5 18.0 161 464-645 13-199 (203)
217 PF13424 TPR_12: Tetratricopep 96.2 0.011 2.4E-07 45.8 5.4 60 592-651 7-73 (78)
218 PF07079 DUF1347: Protein of u 96.2 1.8 4E-05 44.4 37.0 72 579-651 445-522 (549)
219 COG5107 RNA14 Pre-mRNA 3'-end 96.0 2.1 4.6E-05 43.8 25.6 85 57-166 39-123 (660)
220 COG3898 Uncharacterized membra 95.9 2.3 4.9E-05 42.9 27.2 222 365-593 165-398 (531)
221 KOG0543 FKBP-type peptidyl-pro 95.9 0.14 3.1E-06 51.6 12.6 137 494-652 215-354 (397)
222 KOG1538 Uncharacterized conser 95.8 1.3 2.8E-05 47.3 19.4 211 241-516 623-846 (1081)
223 PF09205 DUF1955: Domain of un 95.8 0.7 1.5E-05 38.8 14.0 140 498-656 13-152 (161)
224 PF13512 TPR_18: Tetratricopep 95.6 0.25 5.5E-06 42.5 11.5 89 565-653 17-128 (142)
225 PF03704 BTAD: Bacterial trans 95.5 0.076 1.7E-06 47.1 8.7 61 591-651 63-123 (146)
226 COG4235 Cytochrome c biogenesi 95.5 0.46 9.9E-06 46.3 14.1 102 520-623 154-260 (287)
227 KOG1941 Acetylcholine receptor 95.4 0.23 4.9E-06 49.1 11.7 47 396-442 16-64 (518)
228 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.8 8.2E-05 42.1 29.1 135 486-623 396-535 (660)
229 PF13424 TPR_12: Tetratricopep 95.3 0.022 4.8E-07 44.1 4.0 27 592-618 48-74 (78)
230 PF12921 ATP13: Mitochondrial 95.3 0.23 5.1E-06 42.3 10.3 50 517-566 47-96 (126)
231 KOG1258 mRNA processing protei 95.3 5.1 0.00011 43.0 31.8 182 455-639 296-490 (577)
232 COG0457 NrfG FOG: TPR repeat [ 95.2 3 6.5E-05 39.7 27.4 196 457-654 60-266 (291)
233 PRK15331 chaperone protein Sic 95.1 0.65 1.4E-05 41.1 12.5 93 528-623 43-137 (165)
234 KOG4555 TPR repeat-containing 95.0 0.19 4E-06 41.9 8.4 88 567-654 52-145 (175)
235 PRK11906 transcriptional regul 95.0 4.1 8.9E-05 42.6 19.8 157 488-647 252-430 (458)
236 KOG2114 Vacuolar assembly/sort 94.9 8.1 0.00017 43.1 23.4 168 80-282 345-519 (933)
237 PRK11906 transcriptional regul 94.8 0.61 1.3E-05 48.5 13.2 118 537-654 273-402 (458)
238 COG3118 Thioredoxin domain-con 94.6 1.3 2.8E-05 43.1 14.2 121 531-654 143-266 (304)
239 PF10300 DUF3808: Protein of u 94.6 2 4.4E-05 46.4 17.6 115 535-652 246-375 (468)
240 KOG2610 Uncharacterized conser 94.5 0.38 8.1E-06 47.1 10.4 159 499-660 115-283 (491)
241 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.26 5.5E-06 51.1 9.8 62 558-619 75-141 (453)
242 PF13525 YfiO: Outer membrane 94.5 4.4 9.6E-05 38.2 18.6 58 393-450 12-71 (203)
243 KOG3941 Intermediate in Toll s 94.4 0.42 9.2E-06 45.6 10.2 101 474-575 52-175 (406)
244 COG0457 NrfG FOG: TPR repeat [ 94.4 4.8 0.0001 38.2 26.6 197 422-622 60-268 (291)
245 KOG4234 TPR repeat-containing 94.3 0.15 3.2E-06 46.0 6.8 89 567-655 104-199 (271)
246 PF03704 BTAD: Bacterial trans 94.3 0.46 1E-05 42.1 10.3 68 492-560 67-138 (146)
247 smart00299 CLH Clathrin heavy 94.3 1.7 3.6E-05 38.1 13.7 63 525-600 72-135 (140)
248 smart00299 CLH Clathrin heavy 94.3 2.9 6.3E-05 36.6 15.3 87 119-209 9-95 (140)
249 KOG3941 Intermediate in Toll s 94.1 0.28 6.1E-06 46.7 8.5 98 171-268 53-173 (406)
250 KOG2066 Vacuolar assembly/sort 94.0 12 0.00026 41.5 25.7 74 525-610 637-710 (846)
251 PF13281 DUF4071: Domain of un 94.0 5.3 0.00011 41.0 18.0 73 359-431 146-227 (374)
252 PF12921 ATP13: Mitochondrial 94.0 0.71 1.5E-05 39.4 10.0 48 553-600 47-98 (126)
253 PF10300 DUF3808: Protein of u 93.9 2.4 5.2E-05 45.8 16.3 160 424-585 191-374 (468)
254 PF04184 ST7: ST7 protein; In 93.8 4.7 0.0001 42.3 17.2 102 523-624 260-380 (539)
255 PF00515 TPR_1: Tetratricopept 93.7 0.13 2.9E-06 32.0 4.1 32 591-622 2-33 (34)
256 PF07719 TPR_2: Tetratricopept 93.7 0.19 4E-06 31.2 4.8 32 592-623 3-34 (34)
257 KOG1585 Protein required for f 93.6 6.5 0.00014 37.1 17.3 87 560-647 152-250 (308)
258 PF04053 Coatomer_WDAD: Coatom 93.6 2.4 5.2E-05 45.1 15.5 152 467-648 272-426 (443)
259 COG4105 ComL DNA uptake lipopr 93.6 7.2 0.00016 37.4 21.0 177 456-652 35-232 (254)
260 COG1729 Uncharacterized protei 93.4 0.76 1.6E-05 44.2 10.2 92 490-584 145-241 (262)
261 COG1729 Uncharacterized protei 93.0 0.76 1.6E-05 44.2 9.5 100 524-626 144-251 (262)
262 KOG4648 Uncharacterized conser 92.9 0.37 8E-06 47.2 7.3 46 531-579 106-152 (536)
263 PF04184 ST7: ST7 protein; In 92.8 3.4 7.3E-05 43.3 14.4 152 495-658 176-329 (539)
264 COG3118 Thioredoxin domain-con 92.8 8.8 0.00019 37.6 16.3 141 496-639 143-287 (304)
265 COG4785 NlpI Lipoprotein NlpI, 92.7 7.1 0.00015 36.2 14.6 159 488-654 100-267 (297)
266 KOG2610 Uncharacterized conser 92.7 2.8 6.1E-05 41.3 12.8 176 467-646 114-308 (491)
267 KOG2114 Vacuolar assembly/sort 92.7 21 0.00044 40.2 29.5 117 156-280 338-458 (933)
268 PF04053 Coatomer_WDAD: Coatom 92.4 2.2 4.8E-05 45.4 13.2 135 494-654 268-403 (443)
269 COG4105 ComL DNA uptake lipopr 92.2 11 0.00024 36.1 17.3 185 419-624 33-238 (254)
270 KOG4555 TPR repeat-containing 91.7 1.4 3E-05 36.9 8.2 87 532-620 53-145 (175)
271 PF13176 TPR_7: Tetratricopept 91.7 0.37 8.1E-06 30.5 4.0 26 626-651 1-26 (36)
272 KOG1920 IkappaB kinase complex 91.6 33 0.00072 40.3 25.1 23 391-413 795-819 (1265)
273 PF13512 TPR_18: Tetratricopep 91.5 4.5 9.7E-05 35.1 11.5 114 494-624 17-133 (142)
274 PF08631 SPO22: Meiosis protei 91.5 16 0.00035 36.4 24.5 99 423-522 86-192 (278)
275 PF00637 Clathrin: Region in C 91.4 0.055 1.2E-06 47.8 -0.0 87 122-211 12-98 (143)
276 PF04097 Nic96: Nup93/Nic96; 91.3 29 0.00063 39.1 21.9 86 393-483 265-354 (613)
277 KOG1941 Acetylcholine receptor 91.2 18 0.00039 36.4 18.5 53 531-583 215-271 (518)
278 PRK09687 putative lyase; Provi 91.2 17 0.00037 36.2 25.0 30 383-412 65-98 (280)
279 PF09205 DUF1955: Domain of un 90.7 8.5 0.00018 32.6 11.8 65 387-452 87-151 (161)
280 PF02259 FAT: FAT domain; Int 90.3 25 0.00053 36.4 21.6 151 485-637 144-305 (352)
281 PF02259 FAT: FAT domain; Int 89.4 19 0.00042 37.2 17.0 68 588-655 144-215 (352)
282 PF13170 DUF4003: Protein of u 89.3 9.6 0.00021 38.2 13.6 63 504-567 160-226 (297)
283 PF06552 TOM20_plant: Plant sp 88.8 3.8 8.3E-05 36.9 9.1 34 606-639 51-84 (186)
284 PF07035 Mic1: Colon cancer-as 88.8 10 0.00022 34.1 11.9 133 203-347 14-148 (167)
285 COG3629 DnrI DNA-binding trans 88.8 3.4 7.3E-05 40.5 9.6 76 456-531 153-236 (280)
286 PF09613 HrpB1_HrpK: Bacterial 88.7 3.3 7.1E-05 36.6 8.6 54 601-654 21-74 (160)
287 PF13181 TPR_8: Tetratricopept 88.5 0.84 1.8E-05 28.2 3.7 30 592-621 3-32 (34)
288 TIGR02561 HrpB1_HrpK type III 88.3 3.1 6.7E-05 36.1 8.0 54 602-655 22-75 (153)
289 PF13176 TPR_7: Tetratricopept 88.2 0.9 1.9E-05 28.7 3.7 28 592-619 1-28 (36)
290 PRK11619 lytic murein transgly 88.0 52 0.0011 37.2 32.1 52 565-616 319-372 (644)
291 KOG0890 Protein kinase of the 88.0 90 0.002 39.9 30.3 280 357-655 1423-1733(2382)
292 PF13428 TPR_14: Tetratricopep 87.9 1.8 3.9E-05 28.8 5.2 32 489-522 3-34 (44)
293 KOG4570 Uncharacterized conser 87.7 4 8.7E-05 39.9 9.1 96 451-550 59-163 (418)
294 PF09613 HrpB1_HrpK: Bacterial 87.5 20 0.00044 31.8 13.0 87 532-621 20-108 (160)
295 PF10602 RPN7: 26S proteasome 87.4 14 0.0003 33.9 12.4 95 489-585 38-140 (177)
296 PF07719 TPR_2: Tetratricopept 87.4 1.3 2.7E-05 27.3 4.0 29 625-653 2-30 (34)
297 PF13170 DUF4003: Protein of u 87.3 29 0.00062 34.9 15.5 132 301-463 79-224 (297)
298 KOG1586 Protein required for f 86.7 29 0.00063 32.8 14.0 93 561-653 116-224 (288)
299 PF00515 TPR_1: Tetratricopept 86.6 1.5 3.2E-05 27.1 4.0 29 625-653 2-30 (34)
300 KOG0276 Vesicle coat complex C 86.5 12 0.00026 40.2 12.5 149 468-650 598-747 (794)
301 KOG1585 Protein required for f 86.4 31 0.00067 32.9 16.3 83 461-544 155-249 (308)
302 PRK15180 Vi polysaccharide bio 86.3 12 0.00026 38.9 12.0 109 566-676 331-441 (831)
303 COG3629 DnrI DNA-binding trans 86.0 4 8.6E-05 40.1 8.4 60 593-652 156-215 (280)
304 PF11207 DUF2989: Protein of u 85.8 5 0.00011 36.9 8.4 76 568-644 117-198 (203)
305 PF07035 Mic1: Colon cancer-as 85.4 28 0.0006 31.4 14.8 134 138-313 15-149 (167)
306 KOG4648 Uncharacterized conser 84.5 3 6.6E-05 41.1 6.7 54 494-549 104-158 (536)
307 COG2976 Uncharacterized protei 84.3 34 0.00073 31.5 14.4 87 530-621 97-190 (207)
308 PF13374 TPR_10: Tetratricopep 84.1 2 4.4E-05 27.8 4.0 28 625-652 3-30 (42)
309 TIGR02508 type_III_yscG type I 83.9 11 0.00024 30.1 8.2 86 132-221 20-105 (115)
310 PF10602 RPN7: 26S proteasome 83.8 16 0.00034 33.5 10.9 94 457-550 37-141 (177)
311 COG2976 Uncharacterized protei 83.6 36 0.00078 31.3 12.7 90 564-654 95-189 (207)
312 KOG2066 Vacuolar assembly/sort 83.6 82 0.0018 35.4 22.7 76 152-230 392-467 (846)
313 PRK10941 hypothetical protein; 83.6 8.4 0.00018 37.9 9.5 61 593-653 184-244 (269)
314 PF07721 TPR_4: Tetratricopept 83.4 1.8 4E-05 24.9 3.1 24 625-648 2-25 (26)
315 PF13181 TPR_8: Tetratricopept 82.7 3.1 6.6E-05 25.6 4.2 28 625-652 2-29 (34)
316 KOG1464 COP9 signalosome, subu 82.6 48 0.001 32.0 18.5 240 368-613 41-326 (440)
317 COG4649 Uncharacterized protei 82.4 23 0.0005 31.7 10.5 47 164-210 70-121 (221)
318 KOG1550 Extracellular protein 82.2 89 0.0019 34.8 24.3 246 398-653 261-538 (552)
319 PF13174 TPR_6: Tetratricopept 81.3 3.2 6.9E-05 25.1 3.9 23 599-621 9-31 (33)
320 PRK09687 putative lyase; Provi 81.1 62 0.0013 32.2 27.8 75 454-533 204-278 (280)
321 COG3947 Response regulator con 80.8 60 0.0013 31.9 15.1 58 594-651 283-340 (361)
322 KOG1258 mRNA processing protei 80.4 94 0.002 33.9 30.8 128 59-211 44-179 (577)
323 KOG1920 IkappaB kinase complex 79.4 1.4E+02 0.0031 35.4 21.2 55 529-585 972-1026(1265)
324 PF13174 TPR_6: Tetratricopept 78.9 3.1 6.7E-05 25.2 3.2 29 626-654 2-30 (33)
325 PF14853 Fis1_TPR_C: Fis1 C-te 78.9 16 0.00035 25.5 7.0 29 626-654 3-31 (53)
326 KOG4234 TPR repeat-containing 78.4 43 0.00093 30.9 11.1 28 599-626 177-204 (271)
327 KOG3364 Membrane protein invol 77.8 23 0.0005 30.3 8.7 47 606-652 51-99 (149)
328 PF14853 Fis1_TPR_C: Fis1 C-te 77.8 7.3 0.00016 27.2 5.0 33 595-627 6-38 (53)
329 KOG2396 HAT (Half-A-TPR) repea 77.7 1E+02 0.0022 32.8 31.4 63 116-179 104-167 (568)
330 KOG2063 Vacuolar assembly/sort 77.6 1E+02 0.0022 35.9 16.5 39 370-414 494-532 (877)
331 COG1747 Uncharacterized N-term 77.6 1E+02 0.0023 32.8 22.2 161 418-585 63-232 (711)
332 PF13431 TPR_17: Tetratricopep 77.2 3.5 7.5E-05 25.7 3.0 24 250-273 10-33 (34)
333 PF08631 SPO22: Meiosis protei 77.1 82 0.0018 31.4 25.5 20 495-514 254-273 (278)
334 KOG0276 Vesicle coat complex C 76.9 17 0.00037 39.1 9.5 100 365-482 648-747 (794)
335 KOG1586 Protein required for f 76.5 71 0.0015 30.3 17.2 69 566-634 162-241 (288)
336 TIGR02508 type_III_yscG type I 75.9 40 0.00086 27.1 9.6 86 437-526 21-106 (115)
337 KOG0890 Protein kinase of the 75.7 2.5E+02 0.0055 36.3 32.7 105 523-631 1671-1796(2382)
338 PF00637 Clathrin: Region in C 75.4 1.6 3.4E-05 38.5 1.5 85 223-310 12-96 (143)
339 smart00028 TPR Tetratricopepti 75.0 6.6 0.00014 22.8 4.1 29 593-621 4-32 (34)
340 PF02284 COX5A: Cytochrome c o 75.0 21 0.00045 28.8 7.3 60 505-566 28-87 (108)
341 PF14561 TPR_20: Tetratricopep 74.9 9.5 0.00021 30.3 5.7 45 610-654 8-52 (90)
342 PF13374 TPR_10: Tetratricopep 74.6 7.1 0.00015 25.2 4.3 27 489-515 4-30 (42)
343 KOG4570 Uncharacterized conser 74.0 15 0.00033 36.1 7.6 103 145-248 57-165 (418)
344 cd00923 Cyt_c_Oxidase_Va Cytoc 74.0 24 0.00052 28.1 7.3 62 503-566 23-84 (103)
345 KOG0545 Aryl-hydrocarbon recep 73.0 18 0.00039 34.3 7.6 59 596-654 236-294 (329)
346 KOG4642 Chaperone-dependent E3 72.6 12 0.00025 35.4 6.3 79 572-650 24-104 (284)
347 PF09477 Type_III_YscG: Bacter 72.5 35 0.00077 27.8 8.1 80 131-213 20-99 (116)
348 TIGR02561 HrpB1_HrpK type III 72.4 67 0.0015 28.2 11.3 34 263-296 54-88 (153)
349 PF10579 Rapsyn_N: Rapsyn N-te 72.2 12 0.00025 28.6 5.1 47 534-580 18-65 (80)
350 COG4455 ImpE Protein of avirul 72.0 17 0.00037 33.9 7.1 64 561-624 4-69 (273)
351 PRK12798 chemotaxis protein; R 71.8 1.3E+02 0.0029 31.3 23.2 179 469-650 125-321 (421)
352 PRK13800 putative oxidoreducta 71.6 2.3E+02 0.0049 33.9 26.2 183 454-651 696-879 (897)
353 KOG1308 Hsp70-interacting prot 71.6 2.5 5.4E-05 41.9 1.9 90 570-659 126-217 (377)
354 cd00923 Cyt_c_Oxidase_Va Cytoc 70.6 28 0.00061 27.8 7.0 46 302-347 25-70 (103)
355 PF11207 DUF2989: Protein of u 69.9 39 0.00085 31.3 9.0 72 505-577 124-197 (203)
356 TIGR03504 FimV_Cterm FimV C-te 69.5 9.7 0.00021 25.4 3.8 27 628-654 3-29 (44)
357 PF04097 Nic96: Nup93/Nic96; 69.4 2E+02 0.0044 32.5 24.8 47 183-231 112-158 (613)
358 PF06552 TOM20_plant: Plant sp 68.6 62 0.0013 29.4 9.7 45 606-657 96-140 (186)
359 PF09986 DUF2225: Uncharacteri 67.5 33 0.00072 32.5 8.6 63 592-654 120-195 (214)
360 KOG0376 Serine-threonine phosp 67.2 10 0.00022 39.7 5.3 86 566-651 12-99 (476)
361 PRK10941 hypothetical protein; 66.8 45 0.00097 32.9 9.5 67 562-628 185-253 (269)
362 smart00028 TPR Tetratricopepti 66.1 12 0.00027 21.5 3.9 28 625-652 2-29 (34)
363 PF02284 COX5A: Cytochrome c o 66.0 42 0.00091 27.1 7.2 48 584-631 39-86 (108)
364 KOG3807 Predicted membrane pro 65.9 1.1E+02 0.0024 30.5 11.6 54 493-548 281-337 (556)
365 COG3947 Response regulator con 65.4 1.5E+02 0.0032 29.4 14.6 58 561-618 282-341 (361)
366 KOG4279 Serine/threonine prote 64.3 1.6E+02 0.0035 33.1 13.4 100 496-622 296-398 (1226)
367 KOG1550 Extracellular protein 63.9 2.4E+02 0.0053 31.4 20.9 177 168-350 228-428 (552)
368 PF13762 MNE1: Mitochondrial s 63.4 76 0.0016 27.8 9.1 77 257-333 43-129 (145)
369 smart00386 HAT HAT (Half-A-TPR 63.0 16 0.00036 21.6 3.9 30 604-633 1-30 (33)
370 PF10345 Cohesin_load: Cohesin 62.2 2.8E+02 0.006 31.4 38.7 49 603-651 547-604 (608)
371 PF09477 Type_III_YscG: Bacter 61.8 88 0.0019 25.6 9.1 86 334-424 21-106 (116)
372 KOG0551 Hsp90 co-chaperone CNS 61.0 49 0.0011 33.1 8.3 88 563-650 86-179 (390)
373 PHA02875 ankyrin repeat protei 60.6 2.3E+02 0.005 30.0 15.8 180 123-319 38-230 (413)
374 PRK15180 Vi polysaccharide bio 59.6 75 0.0016 33.4 9.6 130 467-599 300-434 (831)
375 PF09670 Cas_Cas02710: CRISPR- 59.5 1.6E+02 0.0035 30.8 12.7 52 498-550 142-197 (379)
376 PF04190 DUF410: Protein of un 59.3 1.8E+02 0.004 28.5 16.9 123 311-449 41-169 (260)
377 PF04910 Tcf25: Transcriptiona 59.2 1.2E+02 0.0027 31.4 11.6 119 522-640 40-194 (360)
378 PF13762 MNE1: Mitochondrial s 58.6 1.3E+02 0.0028 26.4 10.2 76 459-534 42-127 (145)
379 TIGR03504 FimV_Cterm FimV C-te 58.3 24 0.00052 23.6 4.1 24 493-516 5-28 (44)
380 PHA02875 ankyrin repeat protei 57.6 2E+02 0.0044 30.4 13.7 136 139-279 17-158 (413)
381 PRK11619 lytic murein transgly 57.1 3.4E+02 0.0074 30.9 38.8 243 399-658 254-510 (644)
382 COG1747 Uncharacterized N-term 56.8 2.8E+02 0.0061 29.8 24.6 159 385-550 65-233 (711)
383 PF11768 DUF3312: Protein of u 56.5 1.3E+02 0.0027 32.7 11.0 127 460-610 412-543 (545)
384 PF10345 Cohesin_load: Cohesin 55.3 3.6E+02 0.0077 30.6 32.0 186 116-311 29-252 (608)
385 PF07163 Pex26: Pex26 protein; 54.4 1.1E+02 0.0023 30.1 9.2 87 393-479 90-181 (309)
386 PF14863 Alkyl_sulf_dimr: Alky 53.8 72 0.0016 27.8 7.5 66 574-642 57-122 (141)
387 PF10579 Rapsyn_N: Rapsyn N-te 53.6 42 0.0009 25.7 5.1 47 499-545 18-66 (80)
388 PF07163 Pex26: Pex26 protein; 52.9 1.6E+02 0.0034 29.0 10.0 87 494-583 90-183 (309)
389 KOG1498 26S proteasome regulat 52.8 2.8E+02 0.0062 28.7 19.6 194 453-675 49-263 (439)
390 KOG4507 Uncharacterized conser 51.9 42 0.0009 36.2 6.6 100 534-634 619-720 (886)
391 KOG0991 Replication factor C, 51.7 2.1E+02 0.0045 27.4 10.3 47 476-523 228-274 (333)
392 TIGR02270 conserved hypothetic 50.5 3.4E+02 0.0073 28.9 22.1 46 150-195 98-143 (410)
393 PF11846 DUF3366: Domain of un 50.3 58 0.0012 30.3 7.0 35 587-621 141-175 (193)
394 COG4976 Predicted methyltransf 50.3 36 0.00077 32.1 5.2 53 602-654 7-59 (287)
395 PF07720 TPR_3: Tetratricopept 50.2 58 0.0013 20.6 4.7 28 594-621 5-34 (36)
396 PF00244 14-3-3: 14-3-3 protei 50.0 2.5E+02 0.0054 27.2 13.2 162 493-655 7-200 (236)
397 PF11838 ERAP1_C: ERAP1-like C 50.0 2.9E+02 0.0063 28.0 17.7 84 536-619 144-230 (324)
398 COG4785 NlpI Lipoprotein NlpI, 50.0 2.3E+02 0.005 26.8 14.3 176 435-620 79-267 (297)
399 PF13929 mRNA_stabil: mRNA sta 49.5 2.8E+02 0.006 27.6 14.6 64 519-582 199-262 (292)
400 PF12862 Apc5: Anaphase-promot 48.9 57 0.0012 26.0 5.8 53 600-652 8-69 (94)
401 PF10255 Paf67: RNA polymerase 48.3 72 0.0016 33.4 7.7 67 561-651 125-191 (404)
402 COG4649 Uncharacterized protei 48.2 2.1E+02 0.0046 25.9 16.7 121 498-618 69-195 (221)
403 KOG2471 TPR repeat-containing 47.8 3.8E+02 0.0083 28.7 17.1 54 597-650 213-266 (696)
404 PF04910 Tcf25: Transcriptiona 47.7 3.5E+02 0.0075 28.2 17.6 53 495-547 111-164 (360)
405 COG5159 RPN6 26S proteasome re 47.3 2.9E+02 0.0063 27.2 16.8 134 190-323 10-168 (421)
406 COG2909 MalT ATP-dependent tra 47.2 5.2E+02 0.011 30.1 28.7 216 366-583 427-684 (894)
407 KOG3824 Huntingtin interacting 47.0 43 0.00094 32.9 5.5 60 569-628 127-188 (472)
408 COG4976 Predicted methyltransf 46.4 30 0.00064 32.6 4.1 57 567-623 4-62 (287)
409 COG4455 ImpE Protein of avirul 45.8 2.7E+02 0.0058 26.4 11.6 124 490-622 4-137 (273)
410 KOG2063 Vacuolar assembly/sort 45.2 4.5E+02 0.0097 30.9 13.8 16 81-96 358-373 (877)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 45.0 1.8E+02 0.004 24.8 8.6 42 608-649 81-124 (126)
412 PF10366 Vps39_1: Vacuolar sor 45.0 1.5E+02 0.0032 24.5 7.7 40 369-414 28-67 (108)
413 PF13934 ELYS: Nuclear pore co 44.8 2.5E+02 0.0054 26.9 10.4 107 489-604 78-186 (226)
414 cd08819 CARD_MDA5_2 Caspase ac 44.7 1.2E+02 0.0026 23.8 6.5 66 136-203 21-86 (88)
415 KOG2422 Uncharacterized conser 44.3 2.2E+02 0.0049 31.0 10.5 141 498-639 249-431 (665)
416 PF11846 DUF3366: Domain of un 44.2 85 0.0018 29.2 7.1 32 553-584 139-170 (193)
417 KOG2422 Uncharacterized conser 44.0 4.7E+02 0.01 28.7 16.9 80 494-573 349-431 (665)
418 KOG2581 26S proteasome regulat 44.0 4E+02 0.0086 27.8 12.0 24 561-584 212-235 (493)
419 KOG4077 Cytochrome c oxidase, 43.2 1.4E+02 0.0031 25.3 7.1 59 505-565 67-125 (149)
420 PF12069 DUF3549: Protein of u 42.6 3.9E+02 0.0084 27.3 12.6 86 462-550 172-258 (340)
421 PF10366 Vps39_1: Vacuolar sor 42.4 1.4E+02 0.0031 24.6 7.2 27 185-211 41-67 (108)
422 COG2912 Uncharacterized conser 42.1 1.6E+02 0.0034 28.9 8.5 58 594-651 185-242 (269)
423 PRK13800 putative oxidoreducta 41.3 7E+02 0.015 29.9 28.8 254 274-550 625-880 (897)
424 PF14689 SPOB_a: Sensor_kinase 40.2 44 0.00095 24.3 3.5 22 493-514 29-50 (62)
425 PF11663 Toxin_YhaV: Toxin wit 40.1 30 0.00064 29.6 2.9 33 498-532 106-138 (140)
426 cd08819 CARD_MDA5_2 Caspase ac 39.7 1.6E+02 0.0036 23.1 6.5 64 238-303 22-85 (88)
427 PF06957 COPI_C: Coatomer (COP 38.9 1.8E+02 0.0039 30.8 8.9 42 581-622 289-332 (422)
428 PF04090 RNA_pol_I_TF: RNA pol 38.7 3.3E+02 0.0072 25.4 10.2 130 488-634 42-188 (199)
429 KOG0292 Vesicle coat complex C 38.4 1.2E+02 0.0025 34.8 7.7 99 528-650 626-724 (1202)
430 cd00280 TRFH Telomeric Repeat 38.0 1.3E+02 0.0028 27.5 6.6 26 598-624 119-144 (200)
431 KOG0403 Neoplastic transformat 37.5 5.2E+02 0.011 27.3 21.0 324 187-536 218-616 (645)
432 PRK13342 recombination factor 37.4 5.3E+02 0.012 27.4 16.0 101 418-536 173-279 (413)
433 PF12862 Apc5: Anaphase-promot 37.3 1.8E+02 0.0038 23.2 7.0 53 498-550 9-69 (94)
434 PF11848 DUF3368: Domain of un 36.6 1.2E+02 0.0026 20.6 5.0 34 294-327 12-45 (48)
435 PF14561 TPR_20: Tetratricopep 36.4 2.2E+02 0.0047 22.6 8.7 62 589-650 21-85 (90)
436 KOG4507 Uncharacterized conser 36.4 1.4E+02 0.0031 32.4 7.6 134 519-655 568-707 (886)
437 TIGR02270 conserved hypothetic 36.3 5.5E+02 0.012 27.3 25.4 80 251-335 98-177 (410)
438 PRK10564 maltose regulon perip 35.8 60 0.0013 32.2 4.7 45 383-427 253-298 (303)
439 KOG0376 Serine-threonine phosp 35.7 1.3E+02 0.0027 32.0 7.1 56 599-654 13-68 (476)
440 PRK10564 maltose regulon perip 35.1 75 0.0016 31.5 5.2 40 489-528 259-298 (303)
441 PF11848 DUF3368: Domain of un 35.0 1.5E+02 0.0032 20.2 5.3 33 498-530 13-45 (48)
442 KOG1464 COP9 signalosome, subu 34.0 4.6E+02 0.0099 25.6 17.7 202 383-584 23-258 (440)
443 PF04034 DUF367: Domain of unk 33.4 2.8E+02 0.0061 23.6 7.5 56 560-615 68-124 (127)
444 COG5108 RPO41 Mitochondrial DN 32.8 6.3E+02 0.014 28.3 11.7 115 258-382 33-161 (1117)
445 PF14689 SPOB_a: Sensor_kinase 32.3 97 0.0021 22.5 4.2 29 623-651 22-50 (62)
446 KOG4077 Cytochrome c oxidase, 32.3 2.6E+02 0.0056 23.8 7.0 47 584-630 78-124 (149)
447 PF02184 HAT: HAT (Half-A-TPR) 32.1 1.1E+02 0.0024 18.9 3.6 26 605-631 2-27 (32)
448 COG5191 Uncharacterized conser 31.8 79 0.0017 31.3 4.6 77 556-632 105-184 (435)
449 KOG4567 GTPase-activating prot 31.8 5E+02 0.011 26.1 9.9 73 507-585 263-345 (370)
450 PF11817 Foie-gras_1: Foie gra 30.9 1.6E+02 0.0035 28.6 7.0 18 531-548 187-204 (247)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 30.3 3.4E+02 0.0075 23.1 8.6 43 505-547 81-124 (126)
452 KOG0686 COP9 signalosome, subu 30.1 6.7E+02 0.014 26.3 15.2 59 457-515 151-215 (466)
453 PRK13342 recombination factor 29.2 7.2E+02 0.016 26.4 17.4 48 388-435 229-279 (413)
454 smart00777 Mad3_BUB1_I Mad3/BU 29.1 2.7E+02 0.0059 23.7 7.0 41 506-546 82-123 (125)
455 COG0790 FOG: TPR repeat, SEL1 29.0 5.8E+02 0.013 25.3 19.9 77 576-655 173-268 (292)
456 PF12968 DUF3856: Domain of Un 28.5 3.6E+02 0.0079 22.8 11.4 68 558-650 55-126 (144)
457 PF13934 ELYS: Nuclear pore co 28.2 5.4E+02 0.012 24.6 13.2 120 460-588 80-202 (226)
458 COG2178 Predicted RNA-binding 28.1 4.9E+02 0.011 24.1 9.8 18 635-652 132-149 (204)
459 PF11663 Toxin_YhaV: Toxin wit 27.9 76 0.0016 27.2 3.4 34 80-128 106-139 (140)
460 PF13929 mRNA_stabil: mRNA sta 27.6 6.3E+02 0.014 25.2 15.7 61 451-511 197-262 (292)
461 PF04762 IKI3: IKI3 family; I 27.3 1E+03 0.022 28.6 13.8 183 461-650 699-927 (928)
462 KOG4642 Chaperone-dependent E3 26.9 5.9E+02 0.013 24.6 9.6 77 470-548 24-104 (284)
463 PF11817 Foie-gras_1: Foie gra 26.8 2.2E+02 0.0048 27.7 7.1 24 561-584 181-204 (247)
464 PF09986 DUF2225: Uncharacteri 26.7 5.4E+02 0.012 24.4 9.4 19 566-584 173-191 (214)
465 PF15469 Sec5: Exocyst complex 26.4 5E+02 0.011 23.7 11.7 23 528-550 92-114 (182)
466 cd00280 TRFH Telomeric Repeat 26.4 3.3E+02 0.0072 25.0 7.2 27 566-592 119-145 (200)
467 PF07575 Nucleopor_Nup85: Nup8 26.4 9.5E+02 0.021 26.9 18.6 59 388-448 374-432 (566)
468 COG5187 RPN7 26S proteasome re 25.3 6.8E+02 0.015 24.9 12.5 96 487-583 115-217 (412)
469 PF11768 DUF3312: Protein of u 25.3 3.6E+02 0.0078 29.4 8.5 57 358-414 412-472 (545)
470 PF11838 ERAP1_C: ERAP1-like C 25.1 7.2E+02 0.016 25.0 19.3 60 456-515 169-229 (324)
471 smart00777 Mad3_BUB1_I Mad3/BU 24.9 4.4E+02 0.0095 22.5 8.4 40 609-648 82-123 (125)
472 PF10516 SHNi-TPR: SHNi-TPR; 24.9 1.7E+02 0.0036 18.8 3.8 27 625-651 2-28 (38)
473 PF08424 NRDE-2: NRDE-2, neces 24.5 7.6E+02 0.016 25.1 16.0 114 503-620 47-184 (321)
474 COG5108 RPO41 Mitochondrial DN 24.3 5.5E+02 0.012 28.7 9.5 72 324-395 33-112 (1117)
475 COG0735 Fur Fe2+/Zn2+ uptake r 24.2 4.4E+02 0.0096 23.1 7.8 45 287-331 23-67 (145)
476 KOG2471 TPR repeat-containing 24.2 9.3E+02 0.02 26.0 15.5 102 465-569 249-380 (696)
477 COG5187 RPN7 26S proteasome re 24.1 3.2E+02 0.007 27.0 7.1 132 518-651 77-219 (412)
478 PF12968 DUF3856: Domain of Un 23.8 3.2E+02 0.0069 23.1 6.0 64 602-665 21-101 (144)
479 COG2909 MalT ATP-dependent tra 23.8 1.2E+03 0.026 27.3 28.3 215 432-649 426-684 (894)
480 KOG4814 Uncharacterized conser 23.2 9.4E+02 0.02 27.0 11.0 87 569-655 365-459 (872)
481 KOG4521 Nuclear pore complex, 23.1 1.4E+03 0.031 27.8 15.2 18 465-482 929-946 (1480)
482 KOG0686 COP9 signalosome, subu 23.0 9E+02 0.019 25.4 15.0 62 422-483 151-214 (466)
483 PF04190 DUF410: Protein of un 22.7 7.3E+02 0.016 24.3 18.6 82 454-550 88-169 (260)
484 COG0735 Fur Fe2+/Zn2+ uptake r 22.0 4E+02 0.0087 23.4 7.1 42 390-431 24-65 (145)
485 KOG4567 GTPase-activating prot 22.0 8.2E+02 0.018 24.6 9.4 44 406-449 263-306 (370)
486 PHA03100 ankyrin repeat protei 21.4 1E+03 0.023 25.6 13.8 13 164-176 117-129 (480)
487 PF11123 DNA_Packaging_2: DNA 21.4 2.2E+02 0.0047 21.4 4.2 30 235-265 14-43 (82)
488 smart00544 MA3 Domain in DAP-5 21.4 4.4E+02 0.0096 21.6 7.0 84 288-371 6-89 (113)
489 cd08326 CARD_CASP9 Caspase act 21.3 2.7E+02 0.0059 21.7 5.2 38 264-301 41-78 (84)
490 PF04781 DUF627: Protein of un 21.3 4.8E+02 0.01 21.7 7.2 39 608-646 62-100 (111)
491 PRK11639 zinc uptake transcrip 20.9 4.4E+02 0.0096 23.8 7.4 48 286-333 27-74 (169)
492 PRK11639 zinc uptake transcrip 20.3 3.7E+02 0.0081 24.3 6.7 45 391-435 30-74 (169)
493 KOG4334 Uncharacterized conser 20.2 1.1E+02 0.0023 32.3 3.4 149 107-266 405-573 (650)
494 KOG3824 Huntingtin interacting 20.2 1.6E+02 0.0035 29.2 4.4 54 532-588 126-181 (472)
495 KOG3364 Membrane protein invol 20.2 5.8E+02 0.013 22.2 9.0 35 595-629 76-110 (149)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-114 Score=999.04 Aligned_cols=687 Identities=30% Similarity=0.549 Sum_probs=676.5
Q ss_pred cccCCCccccchhHhhcccc-------ccccCCCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCC
Q 044169 30 KCNHRKTVEVKEPFASYSAC-------QLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSN 102 (742)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~ 102 (742)
.+..++.+++|++|++|+++ ++|++|++||+++|| .+|.+| ++.|++++|+++|++|...|+.
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~--------~~~g~~~~A~~~f~~M~~~g~~- 184 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGY--------AKAGYFDEALCLYHRMLWAGVR- 184 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHH--------HhCCCHHHHHHHHHHHHHcCCC-
Confidence 34467889999999999998 899999999999999 999999 9999999999999999999999
Q ss_pred CCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCC
Q 044169 103 TVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLD 182 (742)
Q Consensus 103 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 182 (742)
||..||+.++++|+..+++..+.++|..+.+.|+.||+.++|+||.+|+++|++++|.++|++|+.+|
T Consensus 185 ------------Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d 252 (857)
T PLN03077 185 ------------PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252 (857)
T ss_pred ------------CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTM 262 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 262 (742)
.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+.+
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 044169 263 YIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFH 342 (742)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 342 (742)
|+++|++++|.++|++|..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChH
Q 044169 343 AQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422 (742)
Q Consensus 343 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 422 (742)
+.+.+.|+.++..++++|+++|+++|++++|.++|++|. .+|.++||++|.+|++.|+.++|+.+|++|.. +++||..
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999998 89999999999999999999999999999986 5999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Q 044169 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGR 502 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 502 (742)
||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+++ .+|+++||+||.+|++.|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccc
Q 044169 583 NLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCS 662 (742)
Q Consensus 583 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s 662 (742)
+|+.+||..+|++|+.+|..+|+.+.++.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCCc----------hhhhhhhhhhhHHHHHHHhhccCCCCCc
Q 044169 663 WIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTD----------NEKEDRVLYHSERLAVGFGLISLPAKNK 732 (742)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p----------~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 732 (742)
||++.+.+|.|.++|.+||+..+||..+.++..+|++.||.| ++||..|++||||||+|||+|+||||+|
T Consensus 730 ~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~ 809 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMP 809 (857)
T ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCe
Confidence 999999999999999999999999999999999999999998 6799999999999999999999999999
Q ss_pred EEEEeccCC
Q 044169 733 FECSRTLEY 741 (742)
Q Consensus 733 ~~~~~~~~~ 741 (742)
|||+|||||
T Consensus 810 i~i~knlr~ 818 (857)
T PLN03077 810 IWVTKNLYM 818 (857)
T ss_pred EEEeCCCEe
Confidence 999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-93 Score=805.37 Aligned_cols=561 Identities=32% Similarity=0.589 Sum_probs=552.2
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHchhCC-CCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 044169 180 YLDIASCNCLLAGYAKNALFDQAFSFFLKLDGID-VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA 258 (742)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (742)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 044169 259 LLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMG 338 (742)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 338 (742)
|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCC
Q 044169 339 YMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAA 418 (742)
Q Consensus 339 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 418 (742)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|. .+|+++||++|.+|++.|+.++|+++|++|.+.|+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYS 498 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 498 (742)
||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIAL 578 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (742)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044169 579 IFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKE 658 (742)
Q Consensus 579 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 658 (742)
+++++|+..|+..+|++++.+|..+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCCc-----------hhhhhhhhhhhHHHHHHHhhccC
Q 044169 659 PGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTD-----------NEKEDRVLYHSERLAVGFGLISL 727 (742)
Q Consensus 659 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p-----------~~~~~~l~~~~~~l~~~~~~~~~ 727 (742)
||+||+++.+.+|.|.+++..||+..+||+++.++..+|++.||.| ++|+..|++||||||+|||+|++
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 9999999999999999999999999999999999999999999999 68999999999999999999999
Q ss_pred CCCCcEEEEeccCC
Q 044169 728 PAKNKFECSRTLEY 741 (742)
Q Consensus 728 ~~~~~~~~~~~~~~ 741 (742)
|||+||||+|||||
T Consensus 643 ~~~~~i~i~knlr~ 656 (697)
T PLN03081 643 SEWTPLQITQSHRI 656 (697)
T ss_pred CCCCeEEEecCCEE
Confidence 99999999999997
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-82 Score=734.27 Aligned_cols=577 Identities=27% Similarity=0.480 Sum_probs=562.9
Q ss_pred CCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchH
Q 044169 55 SPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLE 134 (742)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 134 (742)
.+.++..++| .++.+| ++.|++++|+.+|+.|.+.|+. |+..+|..++++|.+.+.+.
T Consensus 46 ~~~~~~~~~n-~~i~~l--------~~~g~~~~A~~l~~~m~~~g~~-------------~~~~~~~~ll~~~~~~~~~~ 103 (857)
T PLN03077 46 SSSSSTHDSN-SQLRAL--------CSHGQLEQALKLLESMQELRVP-------------VDEDAYVALFRLCEWKRAVE 103 (857)
T ss_pred hcccchhhHH-HHHHHH--------HhCCCHHHHHHHHHHHHhcCCC-------------CChhHHHHHHHHHhhCCCHH
Confidence 4466777899 999999 9999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCC
Q 044169 135 LGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDV 214 (742)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 214 (742)
.|.++|..+.+.|..++..++|+|+.+|+++|+++.|.++|++|+++|+++||++|.+|++.|++++|+++|++|...|+
T Consensus 104 ~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 104 EGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHH
Q 044169 215 QPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGF 294 (742)
Q Consensus 215 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 294 (742)
.||..||+.++++|+..+++..+.+++..+.+.|+.||..++|+|+.+|+++|++++|.++|++|+++|.++||++|.+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~ 263 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 044169 295 KQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAK 374 (742)
Q Consensus 295 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 374 (742)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|++|+.+|+++|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 044169 375 KQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES 454 (742)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 454 (742)
++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|
T Consensus 344 ~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 344 KVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred HHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
+..++++|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISK 614 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 614 (742)
.|.++.+.+++..+.+ .|+.+|..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++++
T Consensus 502 ~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 502 IGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999977 699999999999999999999999999999998 7999999999999999999999999999
Q ss_pred HHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCC
Q 044169 615 QILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK-MKEISKEP 659 (742)
Q Consensus 615 ~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-~~~~~~~~ 659 (742)
+|.+. .| |..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 579 ~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 579 RMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99985 46 88999999999999999999999999999 67887763
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-68 Score=603.93 Aligned_cols=474 Identities=22% Similarity=0.375 Sum_probs=459.5
Q ss_pred CCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcC-CCCCCCccccccccCCChhhHHHHHHhhccccchHH
Q 044169 57 KRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDG-CSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLEL 135 (742)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 135 (742)
.++.++|+ .+|.+| .+.|++++|+++|+.|...+ +. ||..+|+.++.+|.+.++++.
T Consensus 84 ~~~~~~~~-~~i~~l--------~~~g~~~~Al~~f~~m~~~~~~~-------------~~~~t~~~ll~a~~~~~~~~~ 141 (697)
T PLN03081 84 RKSGVSLC-SQIEKL--------VACGRHREALELFEILEAGCPFT-------------LPASTYDALVEACIALKSIRC 141 (697)
T ss_pred CCCceeHH-HHHHHH--------HcCCCHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHHHHHHhCCCHHH
Confidence 45778999 999999 99999999999999998765 67 899999999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCC
Q 044169 136 GRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQ 215 (742)
Q Consensus 136 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 215 (742)
+.++|..|.+.|+.||+.+||.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 221 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHH
Q 044169 216 PNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295 (742)
Q Consensus 216 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 295 (742)
||..||+.++.+|+..|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~ 301 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKK 375 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 375 (742)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.+|..++++|+++|+++|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCCC
Q 044169 376 QLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVK-SKFES 454 (742)
Q Consensus 376 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~-~~~~~ 454 (742)
+|++|. .||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|
T Consensus 382 vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 382 VFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred HHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 999998 8999999999999999999999999999999999999999999999999999999999999999976 69999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT-AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSAC 532 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 532 (742)
+..+|++++++|++.|++++|.+++++|. .|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..+++.|
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLY 538 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHH
Confidence 99999999999999999999999999998 88999999999999999999999999999975 5675 47899999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILP 556 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p 556 (742)
++.|++++|.++++.|.+ .|+++
T Consensus 539 ~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HhCCCHHHHHHHHHHHHH-cCCcc
Confidence 999999999999999976 57653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-66 Score=589.76 Aligned_cols=525 Identities=17% Similarity=0.244 Sum_probs=461.8
Q ss_pred CCccccchhHhhcccc-------ccccCCCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCc
Q 044169 34 RKTVEVKEPFASYSAC-------QLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPV 106 (742)
Q Consensus 34 ~~~~~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 106 (742)
++...+..+++.+.++ ++|++|+.++.+.|+ .+..+. -+..+.+.|..++|+.+|+.|..
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~-~v~~~~---li~~~~~~g~~~eAl~lf~~M~~--------- 434 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMD-KIYHAK---FFKACKKQRAVKEAFRFAKLIRN--------- 434 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCch-HHHHHH---HHHHHHHCCCHHHHHHHHHHcCC---------
Confidence 4555677777777655 899999988887776 655431 01112899999999999999863
Q ss_pred cccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCC
Q 044169 107 TCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMP----YLD 182 (742)
Q Consensus 107 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~ 182 (742)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||
T Consensus 435 --------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 --------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred --------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999997 589
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHH--hCCCCChhHHHHHH
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMK--LQYLSKTAVSNALL 260 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li 260 (742)
..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++|+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 57899999999999
Q ss_pred HHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 044169 261 TMYIKCGMMEDAESVFEGLVQ----RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSH 336 (742)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 336 (742)
.+|+++|++++|.++|++|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999965 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHh
Q 044169 337 MGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMV 413 (742)
Q Consensus 337 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 413 (742)
+|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++| +..||..+||.||.+|++.|++++|+++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 568999999999999999999999999999999
Q ss_pred HcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH
Q 044169 414 RNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSM 493 (742)
Q Consensus 414 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 493 (742)
..|+.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..+|++++.+|.+ ++++|.++.+.+.. |+.
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~- 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS- 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-
Confidence 9999999999999999999999999999999999999999999999999976442 34555444332221 110
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (742)
.......+..+.|+.+|++|.+.|+.||..||+.++.++...+..+.+..+++.|.. .+..|+..+|+++++++++.
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~-- 895 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY-- 895 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--
Confidence 011111223457999999999999999999999999888888889998888888744 47788899999999988432
Q ss_pred HHHHHHHHHhCC---CCCCH
Q 044169 574 LEIALIFISNLP---IKPTA 590 (742)
Q Consensus 574 ~~~A~~~~~~~~---~~p~~ 590 (742)
.++|..++++|. ..|+.
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCc
Confidence 468999999885 44543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-65 Score=575.73 Aligned_cols=504 Identities=16% Similarity=0.236 Sum_probs=419.9
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCccc-----HHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHH
Q 044169 149 CGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIAS-----CNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYST 223 (742)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 223 (742)
.++...|..++..+++.|++++|.++|++|+.++... ++.++.+|.+.|..++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4566677777778888888888888888887665544 44556668888888888888888863 78888888
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC----CCCcchHHHHHHHHHhCCC
Q 044169 224 MLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV----QRNVISWTAIINGFKQHGD 299 (742)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 299 (742)
++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 888888888888888888888888888888888888888888888888888888886 4788888888888888888
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 044169 300 YEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK--RGMALGDFVGTAIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 300 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 377 (742)
+++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888876 567888888888888888888888888888
Q ss_pred Hhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 044169 378 KEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES 454 (742)
Q Consensus 378 ~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 454 (742)
+.| ++.|+..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 888 55778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
+..+|++|+.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888884 68888888888888888888888888888888888888888888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh----hc-------------------CCHHHHHHHHHhCC--
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG----RA-------------------GKLEIALIFISNLP-- 585 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~-- 585 (742)
+|++.|++++|.++|++|.+ .|+.||..+|++++.++. ++ +..++|..+|++|.
T Consensus 763 a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 88888888888888888866 588888888888886633 22 23588999999986
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 044169 586 -IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL-DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEP 659 (742)
Q Consensus 586 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 659 (742)
..||..+|+.++.++.+.+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|.+.|+.|+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 7899999999998777888888888888876543 455889999999987322 36899999999999998765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.6e-33 Score=330.02 Aligned_cols=550 Identities=13% Similarity=0.067 Sum_probs=349.9
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...|++++|...|+++.+..+. +...+..+...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 370 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAPN--------------SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLG 370 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC--------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 6677777777777777665433 44555666666667777777777777666554 34556667777
Q ss_pred HHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
..|.+.|++++|.+.|+++.. .+...|..+...+...|++++|++.|+.+.+... .+......++..+.+.|++++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHH
Confidence 777777777777777766543 2344566666667777777777777777665431 123334445566666777777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHC
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMRED 313 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 313 (742)
|..++..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++.+.
T Consensus 450 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777776666542 44556666667777777777777777766533 23445666666666777777777777776654
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHH
Q 044169 314 GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNA 391 (742)
Q Consensus 314 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 391 (742)
+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+ ..+.+...|..
T Consensus 529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3 2345566666666666677777777776666553 334455566666677777777777776665 11344556666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
+...|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 6677777777777777777666543 2344556666666666777777777776666543 3445666666666777777
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
+++|.++++.+. ..+...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|.+.++.+
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777766665 234455666666666677777777777766663 344455566666666677777777766666
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 549 VKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.+ ..+.+...+..++..|.+.|++++|.+.|+++. .++++.+++.+...+...|+ .+|...++++++..|+++..
T Consensus 763 l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 763 LK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 54 234455566666666777777777777666653 23345666666666666666 56677777776666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+..++.+|...|++++|.++++++.+.+.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66666677777777777777766665553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-32 Score=322.73 Aligned_cols=582 Identities=12% Similarity=0.018 Sum_probs=472.1
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...|++++|+..|+++.+.++. +...+..+...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la 336 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSAPE--------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLA 336 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhCCC--------------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 6789999999999999876644 33445555666778899999999999988874 45667788888
Q ss_pred HHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
..+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHH
Confidence 999999999999999988754 355678888999999999999999999988753 3355667778888889999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHC
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMRED 313 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 313 (742)
|...+..+.+.. +........++..|.+.|++++|..+++.+.. .+...|+.+...+...|++++|...|+++.+.
T Consensus 416 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 416 AIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 999999988765 33345567788889999999999999988854 35678999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHH
Q 044169 314 GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNA 391 (742)
Q Consensus 314 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 391 (742)
. +.+...+..+...+...|++++|...++.+.+.+ +.+..++..+...|.+.|+.++|..+|+++ ..+.+...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 3 3345567777888889999999999999998765 446778888999999999999999999887 21455677888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
++..|.+.|++++|..+++++.... +.+..+|..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999988753 5567788999999999999999999999988764 4567788889999999999
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
+++|...|+++. +.+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999876 3456789999999999999999999999998864 455677888888999999999999999998
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 549 VKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.+ ..|+..++..++.++.+.|++++|.+.++++. .+.+...+..+...|...|+.++|...++++++..|+++.+
T Consensus 730 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 730 LK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred Hh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 65 34666778889999999999999999988764 34467788888888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQL 693 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 693 (742)
+..++++|...|+ ++|.++++++.+.... ++ ..|. .+.......+.+.++.+.++++.++
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~-~~~~----~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPN-IP-AILD----TLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-Cc-HHHH----HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999 8899999988765321 11 1111 1112233445666666666666554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.7e-24 Score=257.75 Aligned_cols=576 Identities=11% Similarity=0.031 Sum_probs=375.9
Q ss_pred CCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCcccc----ccccCCChhhHHHHHHhhccccc
Q 044169 57 KRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCY----SLESLLDKQFVIEVLSYCSREEC 132 (742)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~~~ 132 (742)
+.|...+. .++..+ .+.|+.++|...+++..+..+.. +.... .....|+........+.+...|+
T Consensus 59 p~~p~~~~-~~~~~~--------l~~g~~~~A~~~l~~l~~~~P~~--~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 59 PNNPDVIA-ARFRLL--------LRQGDSDGAQKLLDRLSQLAPDS--NAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred CCCHHHHH-HHHHHH--------HhCCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 44566677 888888 99999999999999999877540 00000 00001122223444556788899
Q ss_pred hHHHHHHHHHHHHhccCCChhHHH-HHHHHHHhcCChhHHHHHHccCCC--C-CcccHHHHHHHHHhCCChHHHHHHHHH
Q 044169 133 LELGRRYHALITKTAVCGDQFVTA-SLVNMYAKCGDIKSMVAVVKQMPY--L-DIASCNCLLAGYAKNALFDQAFSFFLK 208 (742)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (742)
+++|.+.++.+.+.. +++..... .+.......|+.++|++.|+++.. | +...+..+...+...|+.++|+..|++
T Consensus 128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~ 206 (1157)
T PRK11447 128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQ 206 (1157)
T ss_pred HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999998764 34432211 112223345999999999999874 3 455788888999999999999999999
Q ss_pred chhCCCC----------------CCh---hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 044169 209 LDGIDVQ----------------PNH---YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMM 269 (742)
Q Consensus 209 m~~~~~~----------------p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (742)
+...... ++. ..+...+..+-.....+.|...+....+....|+.. .......+...|++
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~ 285 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQG 285 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCH
Confidence 8653210 000 011122222222233444555555444332223221 12345567778888
Q ss_pred HHHHHHHhccCC--C-CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHhccC
Q 044169 270 EDAESVFEGLVQ--R-NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDP-NEYTF------------TVALASCASLR 333 (742)
Q Consensus 270 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~~ll~~~~~~~ 333 (742)
++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 888888887754 2 56678888888888888888888888887653221 11111 11123456778
Q ss_pred ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHH
Q 044169 334 NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQ 411 (742)
Q Consensus 334 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 411 (742)
++++|...++.+++.. +.+...+..+...|...|++++|++.|++. .. +.+...+..+...|. .++.++|+.+++.
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~ 443 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIAS 443 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHh
Confidence 8888888888888764 345566677788888888888888888876 22 333455666666664 4567888877766
Q ss_pred HhHcCCC--------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044169 412 MVRNDAA--------CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT 483 (742)
Q Consensus 412 m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 483 (742)
+...... .....+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5432100 011234445566677888888888888877754 3345667777888888888888888888764
Q ss_pred ---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 484 ---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS---------TFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 484 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
..+...+..+...+...++.++|+..++++......++.. .+......+...|+.++|.++++.
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 2244455555555667788888888877654332222211 123345567777888888877652
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 552 YGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
.+++...+..+.+.|.+.|++++|++.|++.. ..| +...+..+...+...|++++|++.++++++..|+++..+..
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 23445566677788888888888888887754 334 56777778888888888888888888888888877888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++.++...|++++|.++++++....
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888776544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=7.2e-23 Score=243.86 Aligned_cols=547 Identities=12% Similarity=0.051 Sum_probs=408.0
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChh-hHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQ-FVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASL 158 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 158 (742)
...|++++|+..|+++...++. +.. ............++.++|...++.+.+.. +.+...+..+
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~--------------~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPP--------------ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCC--------------ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 7899999999999999876543 322 11111222334689999999999999885 5577788999
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCc------ccH-----------------HHHHHHHHhCCChHHHHHHHHHchhCCCC
Q 044169 159 VNMYAKCGDIKSMVAVVKQMPYLDI------ASC-----------------NCLLAGYAKNALFDQAFSFFLKLDGIDVQ 215 (742)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 215 (742)
..++...|+.++|+..|+++...+. ..| ...+..+-.......|...+..+......
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998753211 111 11111111122244555555555433222
Q ss_pred CChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--CCc---chHHHH
Q 044169 216 PNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--RNV---ISWTAI 290 (742)
Q Consensus 216 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l 290 (742)
|+... ......+...|++++|...+++.++.. +.+...+..|..+|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 268 p~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 32221 123455677899999999999999875 55788899999999999999999999998855 221 123222
Q ss_pred ------------HHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 291 ------------INGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 291 ------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 346778999999999999998863 3345667778888999999999999999999864 33455666
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-C----------ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKS-A----------SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI 427 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 427 (742)
.+...|. .++.++|..+++.+... + ....+..+...+...|++++|++.|++..+.. +-+...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 7777775 46789999998876311 0 12235556778889999999999999998864 2245567788
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Cc---------hHHHHHH
Q 044169 428 LKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA----DV---------VSWNSMI 494 (742)
Q Consensus 428 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li 494 (742)
...+...|+.++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 889999999999999999988754 334555555666678899999999999988632 11 1123456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
..+...|+.++|+.+++. .+++...+..+...+.+.|++++|++.|+.+.+. -+.+...+..++.+|...|++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCH
Confidence 778899999999999872 2445566778888999999999999999999763 344577889999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCHHHHHHH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA------AVYVTLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~A~~~ 646 (742)
++|++.++... ..| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|.+.
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999865 344 466677788889999999999999999999876544 3667789999999999999999
Q ss_pred HHHHHh-CCC
Q 044169 647 RKLMKM-KEI 655 (742)
Q Consensus 647 ~~~m~~-~~~ 655 (742)
+++... .++
T Consensus 734 y~~Al~~~~~ 743 (1157)
T PRK11447 734 YKDAMVASGI 743 (1157)
T ss_pred HHHHHhhcCC
Confidence 988863 344
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.2e-20 Score=214.42 Aligned_cols=541 Identities=9% Similarity=-0.031 Sum_probs=384.2
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...|++++|++.|++.++..+. +..++..+..++...|+.++|....+..++.. +.|...+..+.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~--------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La 119 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD--------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA 119 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 3459999999999999998876 68889999999999999999999999999874 23444444442
Q ss_pred HHHHhcCChhHHHHHHccCCC--C-CcccHHHHHHH--------HHhCCChHHHHHHHHHchhCCCCCChhhHHHH-HHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPY--L-DIASCNCLLAG--------YAKNALFDQAFSFFLKLDGIDVQPNHYTYSTM-LAI 227 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~ 227 (742)
. .++.++|..+++++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... .+.
T Consensus 120 -~---i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 120 -A---IPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred -H---hccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHH
Confidence 2 2899999999999864 3 34444444444 5555 55555555 3333334455555555 899
Q ss_pred HccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-CCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHH
Q 044169 228 CGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIK-CGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRL 306 (742)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 306 (742)
+...+++++|..++..+.+.+ +.+......|..+|.. .++ +++..+++...+.|...+..+...|.+.|+.++|..+
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999987 4456667778788888 477 8888888776567888999999999999999999999
Q ss_pred HHHHHHCCCC-CCHHHHHHH------------------------------HHHHhccCChhHHHHHHH------------
Q 044169 307 VCLMREDGID-PNEYTFTVA------------------------------LASCASLRNSHMGYMFHA------------ 343 (742)
Q Consensus 307 ~~~m~~~g~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~i~~------------ 343 (742)
++++...-.. |+..++.-+ +..+.+.++++.+.++..
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 9998654222 333332222 223334444444433321
Q ss_pred -----------------HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhCCC
Q 044169 344 -----------------QVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG-KSAS----SVSWNAQIAGFFRNQK 401 (742)
Q Consensus 344 -----------------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~li~~~~~~g~ 401 (742)
.+.+. .+.+....--+.....+.|+.++|.++|+..- .+++ ...-+-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 11110 01122222233334456788888888888772 1222 2334467777777766
Q ss_pred ---cHHHHHH------------HH----------HHhH-cCC-CC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 044169 402 ---TEEAIEA------------FS----------QMVR-NDA-AC--DEFTYSSILKACSLLPSLATCEQIHSRIVKSKF 452 (742)
Q Consensus 402 ---~~~A~~~------------~~----------~m~~-~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~ 452 (742)
..+++.+ .. .... .+. ++ +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 3344333 11 1111 111 22 45556666655555 78888988777776653
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVL 529 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 529 (742)
|+......+...+...|++++|...|+++. .++...+..+..++.+.|++++|...+++.++. .|+. ..+..+.
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La 583 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLH 583 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 554444445555678999999999999776 345556777788889999999999999999885 3554 3344444
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 607 (742)
......|++++|...+++..+ ..|+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++...|+++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 555567999999999999864 45678889999999999999999999998864 455 4667788888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+|+..++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999887544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.7e-19 Score=202.37 Aligned_cols=551 Identities=10% Similarity=0.019 Sum_probs=398.9
Q ss_pred CccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHH
Q 044169 59 AGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRR 138 (742)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 138 (742)
+...+. .+...| .+.|++++|+..+++..+..+. |.. |..++..+ ++...|..
T Consensus 77 n~~~~~-~LA~~y--------l~~g~~~~A~~~~~kAv~ldP~--------------n~~-~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 77 NIPLTL-YLAEAY--------RHFGHDDRARLLLEDQLKRHPG--------------DAR-LERSLAAI---PVEVKSVT 129 (987)
T ss_pred CHHHHH-HHHHHH--------HHCCCHHHHHHHHHHHHhcCcc--------------cHH-HHHHHHHh---ccChhHHH
Confidence 455677 899999 9999999999999999886633 444 44444333 78889999
Q ss_pred HHHHHHHhccCCChhHHHHHHHH--------HHhcCChhHHHHHHccCCCCC--cccHH-HHHHHHHhCCChHHHHHHHH
Q 044169 139 YHALITKTAVCGDQFVTASLVNM--------YAKCGDIKSMVAVVKQMPYLD--IASCN-CLLAGYAKNALFDQAFSFFL 207 (742)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~ 207 (742)
+++.+.+.. +.+..++..+... |.+.+...++++ .+...++ ..... .+...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999885 4556666666665 777776666766 3333333 33334 44889999999999999999
Q ss_pred HchhCCCCCChhhHHHHHHHHcc-CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC-----
Q 044169 208 KLDGIDVQPNHYTYSTMLAICGS-LSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ----- 281 (742)
Q Consensus 208 ~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 281 (742)
++.+.+ +.+..-...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|..+++++..
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999986 3344445556667776 366 777777543 3346888999999999999999999999998843
Q ss_pred CCcchHH------------------------------HHHHHHHhCCCcchHHHHHH-----------------------
Q 044169 282 RNVISWT------------------------------AIINGFKQHGDYEKPLRLVC----------------------- 308 (742)
Q Consensus 282 ~~~~~~~------------------------------~li~~~~~~g~~~~A~~~~~----------------------- 308 (742)
|+..+|- .++..+.+.++++.+.++..
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1111111 12444555555554443321
Q ss_pred ------HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-C-CCCchHHHHHHHHHHHhCCC---HHHHHHH-
Q 044169 309 ------LMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKR-G-MALGDFVGTAIVDMYSGLGE---IWEAKKQ- 376 (742)
Q Consensus 309 ------~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~- 376 (742)
.|... .+-+....--+--...+.|+.++|.+++...... + -..+......|+..|.+.+. ..++..+
T Consensus 361 ~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 361 ALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 11111 0012222222222345668888899888887762 1 22355566688888888766 2333222
Q ss_pred ------------------------HHhc-CC-CC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 377 ------------------------LKEM-GK-SA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 377 ------------------------~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 1111 21 33 56677888877776 8999999988887765 46665544555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHH---HHHHHHHHcCCHHH
Q 044169 429 KACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWN---SMIKAYSQNGRARK 505 (742)
Q Consensus 429 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~ 505 (742)
..+...|++++|...++.+... +|+...+..+...+.+.|++++|...|++....++..++ .+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 5567899999999999987654 444455667788899999999999999988744333333 33334445699999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 506 AIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
|+..+++..+ ..|+...+..+..++.+.|++++|+..+++..+ --+.+...+..+..++...|++++|++.+++..
T Consensus 595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998 478888899999999999999999999999975 234456678889999999999999999999864
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 586 -IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 586 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
..| +...+..+..++...|++++|+..++++++++|++..+....+++.....+++.|.+.+++.-...+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 455 5788999999999999999999999999999999999999999999999999999998877665444
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-20 Score=189.30 Aligned_cols=443 Identities=14% Similarity=0.138 Sum_probs=350.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 044169 187 NCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (742)
..|..-..+.|++++|.+.-...-+.+ +.+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344455567788888877654443332 2233333333344555555555444433333332 33466788888999999
Q ss_pred CChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCChhHHHHHH
Q 044169 267 GMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALA-SCASLRNSHMGYMFH 342 (742)
Q Consensus 267 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~ 342 (742)
|++++|+..++.+.+ ..+..|-.+..++...|+.+.|.+.|.+..+ +.|+.....+-+. .....|++++|...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999988865 3567899999999999999999999988876 4677665544333 334468888998888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC
Q 044169 343 AQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSAS-SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD 420 (742)
Q Consensus 343 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 420 (742)
...++.. +--...|+.|...+-..|++..|+..|++. ...|+ ...|-.+...|...+.+++|+..+.+.... .|+
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 8777653 233567888888999999999999999887 33454 568888999999999999999999887764 454
Q ss_pred -hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CchHHHHHHH
Q 044169 421 -EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN-VHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVVSWNSMIK 495 (742)
Q Consensus 421 -~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~ 495 (742)
.+.+..+...|-.+|.++.|+.-+++..+. +|+ ...|+.|..++-..|++.+|.+.+.+.. .| -..+.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 567888888899999999999999999875 454 6889999999999999999999999876 33 4568899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCC
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGK 573 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~ 573 (742)
.|...|.+++|..+|....+ +.|.. ..++.|...|-++|++++|+..+++.+ .+.|+. ..|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999988 67876 569999999999999999999999986 577874 489999999999999
Q ss_pred HHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 574 LEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+.|+..+.+.. ..|. ....+.|.+.|...|+..+|++.|+.+++++|+.+.+|..++.+..-..+|.+-
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 999999998754 6675 678899999999999999999999999999999999999999888777776663
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=9.6e-19 Score=176.05 Aligned_cols=418 Identities=12% Similarity=0.152 Sum_probs=335.0
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC---CcchHHHHHHHHHhCCC
Q 044169 223 TMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR---NVISWTAIINGFKQHGD 299 (742)
Q Consensus 223 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 299 (742)
.+..-..+.|++++|++.-..+-..+ +.+....-.+-..+....+++.....-....+. -..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888877655544332 222223333334566666666544332222222 35679999999999999
Q ss_pred cchHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHH
Q 044169 300 YEKPLRLVCLMREDGIDP-NEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT-AIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 300 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~ 377 (742)
.++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+..... -+-......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999986 45 4668888999999999999999999988875 45444333 3445556689999998888
Q ss_pred Hhc-CCCCC-hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 044169 378 KEM-GKSAS-SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD-EFTYSSILKACSLLPSLATCEQIHSRIVKSKFES 454 (742)
Q Consensus 378 ~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 454 (742)
.+. ...|. .+.|+.+...+..+|+...|+..|++.... .|+ ...|..|...|...+.++.|...+.+..... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 775 32444 678999999999999999999999998874 455 4578888888999999999999888777643 33
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT--AAD-VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLS 530 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 530 (742)
...++..+...|...|.++-|.+.+++.. +|+ ...|+.|..++-..|++.+|...|.+.+. +.|+. ...+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 46778888889999999999999999887 444 45999999999999999999999999998 56765 67899999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLK 607 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~ 607 (742)
.+...|.+++|..+|.... .+.|+. ...+.|...|..+|++++|+..+++.. ++|+ ..+++.+...|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999885 455654 468899999999999999999998854 7887 678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.|.+.+.+++..+|.-+.++..|+.+|-.+|+..+|+.-++...+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999887753
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.7e-17 Score=184.23 Aligned_cols=421 Identities=11% Similarity=-0.001 Sum_probs=298.8
Q ss_pred hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC---CcchHHHHHHHHH
Q 044169 219 YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR---NVISWTAIINGFK 295 (742)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 295 (742)
..+......+.+.|+++.|...|...++. .|+...|..+..+|.+.|++++|+..++...+. +...|..+..+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34556677788899999999999998875 567788899999999999999999999887653 4567888999999
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKK 375 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 375 (742)
..|++++|+.-|......+-..+ .....++..... ..+........+.. +.+...+..+.. |...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 99999999998877655421111 111222211111 11222222222221 112222222222 222111111111
Q ss_pred HHHhc-CCCCC-hhhHHHHHHH---HHhCCCcHHHHHHHHHHhHcC-CCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 376 QLKEM-GKSAS-SVSWNAQIAG---FFRNQKTEEAIEAFSQMVRND-AAC-DEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 376 ~~~~~-~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
-++.. ...+. ...+..+... ....+++++|++.|++....+ ..| ....+..+...+...|++++|...++...
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 11111 1111111111 123478999999999998765 234 34567777778889999999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HH
Q 044169 449 KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-ST 524 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 524 (742)
+.. +.....|..+..++...|++++|...|++.. +.+...|..+...+...|++++|+..|++.++. .|+. ..
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHH
Confidence 763 3346688889999999999999999999875 345678999999999999999999999999984 5654 66
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HH-------HHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-AP-------IWRP 595 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~-------~~~~ 595 (742)
+..+..++.+.|++++|+..|++..+ ..+.+...+..+..++...|++++|++.|++.. ..|+ .. .++.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788899999999999999999876 334457788999999999999999999998853 3332 11 1222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
....+...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223445699999999999999999999999999999999999999999999988653
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.6e-16 Score=167.32 Aligned_cols=547 Identities=12% Similarity=0.064 Sum_probs=399.5
Q ss_pred cchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhc--cccchHHHHHHHHHHHHhc--cCCChhHHHHHHH
Q 044169 85 STRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCS--REECLELGRRYHALITKTA--VCGDQFVTASLVN 160 (742)
Q Consensus 85 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 160 (742)
.+.|...|....+..+. | ....+.+||. ..+++..|..+|..++... ..||+.+.. ..
T Consensus 146 ~~~A~a~F~~Vl~~sp~--------------N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~ 207 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--------------N--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GH 207 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--------------c--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hh
Confidence 47888888888776532 3 3455666664 5579999999999866543 456665533 36
Q ss_pred HHHhcCChhHHHHHHccCCCCCcccHHHHHHHHH---h---CCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCCh
Q 044169 161 MYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYA---K---NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAI 234 (742)
Q Consensus 161 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 234 (742)
.+.++|+.+.|...|.+..+.|..+-++++.... . ...+..++.++...-... +-|+...+.|..-+.-.|++
T Consensus 208 Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy 286 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDY 286 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccH
Confidence 6789999999999999988877766555554321 1 233666777776665543 45777888888999999999
Q ss_pred HHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHhccCCC--C--cchHHHHHHHHHhCCCcchHHHHHH
Q 044169 235 DEGKQLHAQTMKLQYLS--KTAVSNALLTMYIKCGMMEDAESVFEGLVQR--N--VISWTAIINGFKQHGDYEKPLRLVC 308 (742)
Q Consensus 235 ~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~ 308 (742)
..+..+...+....... -...+--+.++|-..|++++|...|.+..+. | +..+-.+...|.+.|+.+.+...|+
T Consensus 287 ~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 287 ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 99999999988765221 1334677889999999999999999877552 2 4456678899999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC----ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC------HHHHHHHHH
Q 044169 309 LMREDGIDPNEYTFTVALASCASLR----NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGE------IWEAKKQLK 378 (742)
Q Consensus 309 ~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~ 378 (742)
...+. .+-+..|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|....- +..|..++.
T Consensus 367 kv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 367 KVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILE 444 (1018)
T ss_pred HHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99875 3445567777777777664 3455555555555543 4566777777777766543 334444444
Q ss_pred hcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc---CCCCCh------HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 044169 379 EMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN---DAACDE------FTYSSILKACSLLPSLATCEQIHSRIVK 449 (742)
Q Consensus 379 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 449 (742)
..+..+.....|.+.......|.+++|...|.+.... ...+|. .+--.+....-..++.+.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444677788899999999999999999999987664 223333 2233345555667899999999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 044169 450 SKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNSTF 525 (742)
Q Consensus 450 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~ 525 (742)
.. +.-+..|--++.+.-..+.+.+|...+.... ..++..|.-+...|.....+..|.+-|....+.- ..+|..+.
T Consensus 525 eh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 525 EH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 64 2223444444433344467888998888776 5677788888888998888888888777665432 23677777
Q ss_pred HHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHH
Q 044169 526 LAVLSACSH------------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAP 591 (742)
Q Consensus 526 ~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~ 591 (742)
..|.+.|.. .+..++|+++|.++++ ..+.|...-+.+.-+++..|++.+|.++|.+.. ...+..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 777665543 2346788888888876 445677777888899999999999999998875 234567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELD--PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+|..+...|...|++..|+++|+..+... .+++.+...|+.++.+.|++.+|.+.........+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999998853 45788999999999999999999998877665443
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.5e-16 Score=167.46 Aligned_cols=555 Identities=12% Similarity=0.053 Sum_probs=398.2
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...+++..|+.+|...+...+. .+||. ...+-.++.+.++.+.|+.-|..+.+.. +.++.++-+|.
T Consensus 175 ynkkdY~~al~yyk~al~inp~-----------~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~ 240 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPA-----------CKADV--RIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALG 240 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcc-----------cCCCc--cchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHH
Confidence 3568999999999998765543 11444 3344567788899999999999998874 22333333333
Q ss_pred HHHHhcCC---hhHHHHHHccCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCC--CCChhhHHHHHHHHccC
Q 044169 160 NMYAKCGD---IKSMVAVVKQMP---YLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDV--QPNHYTYSTMLAICGSL 231 (742)
Q Consensus 160 ~~~~~~g~---~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~ 231 (742)
-+-....+ +..+..++...- ..|++..+.|...|.-.|++..+.++...+..... ..-+..|-.+.+++-..
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 22223333 444555554432 35788899999999999999999999998876431 12245577888999999
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHhCC----CcchHH
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--R-NVISWTAIINGFKQHG----DYEKPL 304 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~ 304 (742)
|++++|...|.+..+..-..-+..+--|..+|.+.|+++.|...|+.+.. | +..+.-.+...|...+ ..++|.
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999998887764222233446788999999999999999999855 3 4455555666666654 345666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH----HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044169 305 RLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQ----VIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM 380 (742)
Q Consensus 305 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 380 (742)
.++.+..+. .+.|...|..+-..+-.. +.......+.. +...+.++.+.+.|.+...+...|.+.+|...|+..
T Consensus 401 ~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 401 NVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 666666554 244566666665555544 33333555543 445666788999999999999999999999999876
Q ss_pred -CC-----CCCh------hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHH
Q 044169 381 -GK-----SASS------VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE-FTYSSILKACSLLPSLATCEQIHSRI 447 (742)
Q Consensus 381 -~~-----~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~ 447 (742)
+. .+|. .+--.+...+-..++.+.|.+.|..+.... |.- ..|..++......++..+|...+..+
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 11 2222 122234556667789999999999998863 443 34555554444567888899988888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCchHHHHHHHHHHH------------cCCHHHHHHHH
Q 044169 448 VKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVVSWNSMIKAYSQ------------NGRARKAIILF 510 (742)
Q Consensus 448 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~ 510 (742)
.... ..++.+++.+...|.+...+..|.+-|..+. .+|..+.-+|...|.+ .+..++|+++|
T Consensus 557 l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 557 LNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred Hhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 7754 5666777778888998888888888555543 3455555555554432 24577899999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC----C
Q 044169 511 EKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP----I 586 (742)
Q Consensus 511 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 586 (742)
.+.++. -+-|...-+.+.-.++..|++.+|..+|.+..+.. .....+|-.+..+|..+|++-.|+++|+... .
T Consensus 636 ~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 636 GKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998875 23455777888888999999999999999997642 2345578889999999999999999998754 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-------------------cCCHHHHHHHH
Q 044169 587 KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE-------------------AGLQADAEEQR 647 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-------------------~g~~~~A~~~~ 647 (742)
+.+..+...|..++...|.+.+|.+.+..++.+.|.|+.....++-...+ .+..+.|.++|
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F 792 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLF 792 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999887776655433 34567888899
Q ss_pred HHHHhCCCC
Q 044169 648 KLMKMKEIS 656 (742)
Q Consensus 648 ~~m~~~~~~ 656 (742)
..+...+-+
T Consensus 793 ~~ls~~~d~ 801 (1018)
T KOG2002|consen 793 TELSKNGDK 801 (1018)
T ss_pred HHHHhcCCC
Confidence 888866543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.2e-18 Score=181.15 Aligned_cols=291 Identities=14% Similarity=0.112 Sum_probs=223.8
Q ss_pred HHHhCCCHHHHHHHHHhc-CCC-CChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC---hHHHHHHHHHhcCCCCH
Q 044169 363 MYSGLGEIWEAKKQLKEM-GKS-ASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD---EFTYSSILKACSLLPSL 437 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~ 437 (742)
.+...|++++|...|+++ ... .+..++..+...+...|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345667777777777776 222 3445677777888888888888888888776532221 24566777778888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C------chHHHHHHHHHHHcCCHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA--D------VVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
+.|..++..+.+.. +.+..++..++.+|.+.|++++|.+.++.+... + ...|..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888877653 445677888888888888888888888877522 1 11355677788899999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 044169 510 FEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDLLGRAGKLEIALIFISNLP- 585 (742)
Q Consensus 510 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (742)
|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ...+..++.+|.+.|++++|...++++.
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999874 444 456777888899999999999999998753 233 4567889999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 044169 586 IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE---AGLQADAEEQRKLMKMKEISKEPG 660 (742)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~A~~~~~~m~~~~~~~~~~ 660 (742)
..|+...+..+...+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 567777778888899999999999999999999999655 56666665554 569999999999999999988885
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=7.4e-18 Score=179.26 Aligned_cols=297 Identities=14% Similarity=0.181 Sum_probs=175.9
Q ss_pred HHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCCh
Q 044169 193 YAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSK---TAVSNALLTMYIKCGMM 269 (742)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 269 (742)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345556666666666665542 22334555555555666666666666665554321111 23456667777777777
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 044169 270 EDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVI 346 (742)
Q Consensus 270 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 346 (742)
++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 777777777754 34556777777777777777777777777664322211100
Q ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHH
Q 044169 347 KRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTY 424 (742)
Q Consensus 347 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 424 (742)
...+..+...+.+.|++++|...|+++ .. +.+...+..+...|.+.|++++|.++|+++...+......++
T Consensus 180 -------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 180 -------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 112233455556666666666666665 11 233456666777778888888888888877765322223455
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHH---
Q 044169 425 SSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQ--- 499 (742)
Q Consensus 425 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~--- 499 (742)
..+..++...|+.++|...++.+.+.. |+...+..++..|.+.|++++|..+|+++. .|+...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 666666667777777777666666542 444444566666666666666666666554 3555566666655543
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH
Q 044169 500 NGRARKAIILFEKMVVEGIRPTNS 523 (742)
Q Consensus 500 ~g~~~~A~~~~~~m~~~g~~p~~~ 523 (742)
.|+.++++.++++|.+.++.|++.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 346666666666666655555553
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=6.6e-16 Score=172.40 Aligned_cols=353 Identities=10% Similarity=-0.001 Sum_probs=268.8
Q ss_pred HhCCChHHHHHHHhccCCC------CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 044169 264 IKCGMMEDAESVFEGLVQR------NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHM 337 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 337 (742)
.+..+++.-.-+|..-++. +....-.++..+.+.|++++|+.+++........+. ..+..+..+....|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 3455666666666555441 233455667788889999999999988887644333 334444556667899999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc
Q 044169 338 GYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415 (742)
Q Consensus 338 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 415 (742)
|...++.+.+.. +.+...+..+...+...|+.++|...+++. .. +.+...|..+...+...|+.++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999888764 345667788888999999999999999887 22 445678888999999999999999999988765
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHH
Q 044169 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNS 492 (742)
Q Consensus 416 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 492 (742)
...+ ...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|...|++.. ..+...+..
T Consensus 174 ~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4322 2233233 3477889999999999988776433444555566788899999999999999876 345668888
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 493 MIKAYSQNGRARK----AIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 493 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+...|...|++++ |+..|++..+. .|+. ..+..+...+...|++++|...+++..+. -+.+...+..+..+
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999986 89999999874 5664 67888889999999999999999998763 23345567788899
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 568 LGRAGKLEIALIFISNLP-IKPTAPIW-RPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
|.+.|++++|++.++++. ..|+...+ ..+..++...|+.++|...++++++.+|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999998865 56665443 3456678899999999999999999998753
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=2.6e-15 Score=171.33 Aligned_cols=392 Identities=10% Similarity=0.042 Sum_probs=177.8
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMME 270 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (742)
......|+.++|++++.+..... +.+...+..+..++...|++++|..+++..++.. +.+......+..++...|+.+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33444555555555555544311 2223334444444555555555555555544432 222333444444444455555
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 271 DAESVFEGLVQ--R-NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 271 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
+|...+++..+ | +.. |..+...+...|+.++|+..++++.+
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----------------------------------- 144 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----------------------------------- 144 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------------
Confidence 55544444422 1 222 44444444444444444444444444
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hCCCc---HHHHHHHHHHh
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASS------VSWNAQIAGFF-----RNQKT---EEAIEAFSQMV 413 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~ 413 (742)
.. +.+...+..+...+...|..+.|.+.++.....|+. .....++.... ..+++ ++|++.++.+.
T Consensus 145 ~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 145 RA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 32 112333334445555556666666666655422221 00111111111 11122 55666666665
Q ss_pred Hc-CCCCChH-HHH----HHHHHhcCCCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044169 414 RN-DAACDEF-TYS----SILKACSLLPSLATCEQIHSRIVKSKFE-SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD 486 (742)
Q Consensus 414 ~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 486 (742)
+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++...+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 43 1122211 111 0022333446666666666666554421 211 11223455666666666666666554211
Q ss_pred -------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHH
Q 044169 487 -------VVSWNSMIKAYSQNGRARKAIILFEKMVVEG-----------IRPTN---STFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 487 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
...+..+..++...|++++|..+++++.... -.|+. ..+..+...+...|++++|++++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1233444455566666666666666665431 01121 12333444555555555555555
Q ss_pred HHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 546 ESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 546 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+++.. ..+.+...+..++.++...|++++|++.+++.. ..|+ ...+..+...+...|++++|+.+++++++..|++
T Consensus 383 ~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 383 RELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 55543 223334445555555555555555555555433 3333 3344444444555555555555555555555554
Q ss_pred c
Q 044169 624 A 624 (742)
Q Consensus 624 ~ 624 (742)
+
T Consensus 461 ~ 461 (765)
T PRK10049 461 P 461 (765)
T ss_pred H
Confidence 4
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1e-15 Score=174.77 Aligned_cols=394 Identities=10% Similarity=0.051 Sum_probs=271.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhccCC-C--CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044169 253 TAVSNALLTMYIKCGMMEDAESVFEGLVQ-R--NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASC 329 (742)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 329 (742)
.....-.+......|+.++|++++.+... . +...+..+...+...|++++|..+|++..+.. +.+......+...+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33334445555556666666666665543 1 22235666666666666666666666655531 22233444555555
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHH
Q 044169 330 ASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 330 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~ 407 (742)
...|+.++|...++.+++.. +.+.. +..+...+...|+.++|...+++. .. +.+...+..+...+...|..++|+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666666666552 33444 777788889999999999999987 22 3455666778888889999999999
Q ss_pred HHHHHhHcCCCCCh------HHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHh-CCCCchh-HH-H---HHHHHHH
Q 044169 408 AFSQMVRNDAACDE------FTYSSILKACS-----LLPSL---ATCEQIHSRIVKS-KFESNVH-VG-S---SLIEAYN 467 (742)
Q Consensus 408 ~~~~m~~~g~~p~~------~t~~~ll~~~~-----~~g~~---~~a~~i~~~~~~~-~~~~~~~-~~-~---~li~~~~ 467 (742)
.++.... .|+. .....++.... ..+++ +.|...++.+.+. ...|+.. .+ . ..+.++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9987654 2321 01112222221 22233 6778888888754 2223221 11 1 1123445
Q ss_pred hcCCHHHHHHHHHhcCCCC---ch-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcH
Q 044169 468 KCGSWEDAERVFSQLTAAD---VV-SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-----NSTFLAVLSACSHSGLV 538 (742)
Q Consensus 468 ~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~ 538 (742)
..|++++|...|+++...+ +. .-..+..+|...|++++|+..|+++.+. .|. ......+..++...|++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccH
Confidence 7799999999999988432 21 2222577899999999999999998864 332 23466667788999999
Q ss_pred HHHHHHHHHhHHhcC----------CCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc
Q 044169 539 QDGQKVFESMVKEYG----------ILPE---EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH 603 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 603 (742)
++|.++++.+..... -.|+ ...+..++.++...|++++|++.++++. ..| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999875311 1123 2345677889999999999999999865 334 678889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 604 SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|++++|++.++++++++|+++..+..++..+...|++++|..+++.+.+..
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987644
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.3e-15 Score=168.73 Aligned_cols=249 Identities=11% Similarity=0.030 Sum_probs=189.3
Q ss_pred CCCHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC-hHHHHHHHHHhcCCCCHHHH
Q 044169 367 LGEIWEAKKQLKEMGK-----SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD-EFTYSSILKACSLLPSLATC 440 (742)
Q Consensus 367 ~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 440 (742)
.+++++|.+.|+..-. +.....|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 4667778877776620 223456777888888888999999888888765 344 55777777788888899999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 044169 441 EQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG 517 (742)
Q Consensus 441 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 517 (742)
...++.+.+.. +.+..++..+..+|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99888887764 4457788888889999999999999998876 334567778888889999999999999998874
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 044169 518 IRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE--------AHYSCMVDLLGRAGKLEIALIFISNL-PIK 587 (742)
Q Consensus 518 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 587 (742)
.|+ ...+..+..++...|++++|++.|+...+. .|+. ..++.....+...|++++|.+++++. ...
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 454 567888888999999999999999988652 2221 11222223344579999999999874 345
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 588 PT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 588 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
|+ ...+..+...+.+.|++++|...+++++++.+..
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 54 5578888999999999999999999999987743
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.1e-15 Score=168.40 Aligned_cols=352 Identities=10% Similarity=-0.008 Sum_probs=273.5
Q ss_pred HhCCCcchHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Q 044169 295 KQHGDYEKPLRLVCLMRED--GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWE 372 (742)
Q Consensus 295 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 372 (742)
.+..+|+.-.-.|..-.++ .-.-+..-...++..+.+.|+.+.|..+++.++.....+. .....++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 3445555544444333221 0112333455667788899999999999999988765544 444445566677999999
Q ss_pred HHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 044169 373 AKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS 450 (742)
Q Consensus 373 A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 450 (742)
|...|+++ .. +.+...|..+...+.+.|++++|...|++..... +.+...+..+...+...|+.++|...+..+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999998 22 4456778889999999999999999999998753 334667788888999999999999999988766
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA----DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTF 525 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 525 (742)
.. .+...+..+ ..+.+.|++++|...++.+.+. +...+..+..++...|++++|+..++++.+. .|+ ...+
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 42 233333333 3478899999999999987632 2334455677889999999999999999985 454 4677
Q ss_pred HHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 044169 526 LAVLSACSHSGLVQD----GQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAA 599 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 599 (742)
..+..++...|++++ |...|+++.+. .+.+...+..+..++.+.|++++|+..+++.. ..| +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 788889999999986 89999998752 33456688999999999999999999998864 455 46677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 600 CRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+.|++++|...++++++.+|+++..+..++.++...|++++|...++...+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999888777778999999999999999999887654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=3.2e-14 Score=159.03 Aligned_cols=444 Identities=9% Similarity=0.030 Sum_probs=288.9
Q ss_pred HHHHhcCChhHHHHHHccCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPYLDIA---SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... -.........+...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 3456778888888888777643322 1337777777778888888888877611 01122222223456677788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHh--CCCcchHHHHHHHHHHCC
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQ--HGDYEKPLRLVCLMREDG 314 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g 314 (742)
|.++++.+.+.. +.+...+..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888888887775 44466667778888888899999988888876544433334444444 455556888888888763
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHH
Q 044169 315 IDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIA 394 (742)
Q Consensus 315 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~ 394 (742)
+-+...+..+..+..+.|-...|.++...-. +.++-..... =+.+.|.+..+.....+... -.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~~~-----~~ 262 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQ-----LERDAAAEQVRMAVLPTRSE-----TE 262 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHH-----HHHHHHHHHHhhcccccccc-----hh
Confidence 2345555666667777776666665544311 1111000000 01111111111110000000 00
Q ss_pred HHHhCCCcHHHHHHHHHHhHc-CCCCCh-HH----HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 395 GFFRNQKTEEAIEAFSQMVRN-DAACDE-FT----YSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 395 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
+---.+.|+.-++.+... +-.|.. .- ..--+-++...|+..+++..++.+...+.+....+-.++.++|..
T Consensus 263 ---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 263 ---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred ---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 000124455555555442 112321 11 223345667788888888888888888776666788888899999
Q ss_pred cCCHHHHHHHHHhcCCC---------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCCH--H-HH
Q 044169 469 CGSWEDAERVFSQLTAA---------DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-----------RPTN--S-TF 525 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~-t~ 525 (742)
.+++++|+.+|+++... +......|..+|...+++++|..+++++.+.-- .||. . .+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 99999999999887521 222346788899999999999999999887311 2332 2 34
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc
Q 044169 526 LAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH 603 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 603 (742)
..++..+...|++.+|++.++.+.. .-+-|......+.+++...|.+.+|.+.++... ..| +..+......+....
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 5556778899999999999999975 456678888999999999999999999998754 455 456667777888899
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhH
Q 044169 604 SDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
+++++|..+.+.+++..|+++.+-
T Consensus 498 ~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 498 QEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999887543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=4.4e-14 Score=136.91 Aligned_cols=435 Identities=11% Similarity=0.136 Sum_probs=260.7
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhh--ccccchHHH-HHHHHHHHHhccCCChhHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYC--SREECLELG-RRYHALITKTAVCGDQFVTA 156 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~ 156 (742)
..+|....+.-+|+.|.+.|+. .+...-..+++.- -...++.-+ .+.|-.|.+.| +.+..+|
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~-------------vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVD-------------VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 4677888888888888888877 5665555554432 222222211 23344444444 2233333
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 157 SLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
+.|++.+ ++-+...+...++..||+++++-...+.|.++|++-.....+.+..+||.+|.+-. +..
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~ 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSV 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhc
Confidence 3355444 33444445667899999999999999999999999998888999999999998754 334
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH----hcc----CCCCcchHHHHHHHHHhCCCcch-HHHHH
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVF----EGL----VQRNVISWTAIINGFKQHGDYEK-PLRLV 307 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 307 (742)
.+.+..+|....+.||..|+|+++.+.++.|+++.|...+ .+| .+|...+|..+|..+++.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 4889999999999999999999999999999988776543 333 23566666666666666666543 33333
Q ss_pred HHHHHC----CCCC----CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHh
Q 044169 308 CLMRED----GIDP----NEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKE 379 (742)
Q Consensus 308 ~~m~~~----g~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 379 (742)
.+.... .++| |...|...+..|.+..+.+.|.+++.......- +..
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------------------~~~ 390 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------------------WKF 390 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------------------hhh
Confidence 333321 1222 344555666666666666666666554332110 000
Q ss_pred cCCCCC---hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCch
Q 044169 380 MGKSAS---SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNV 456 (742)
Q Consensus 380 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~ 456 (742)
+ .++ ..-|..+....|+....+.-+..|+.|.-.-.-|+..+...++++....+.++-..+++..+...|.....
T Consensus 391 i--g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 391 I--GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred c--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 1 111 12345566677777778888888888887777788888888888888888888888888888777644333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc-CCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQN-GRA-RKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
....-++..+++.. ..|+...-..+-....+. -++ +.....-.+|++..+.| ...+.++..+.+
T Consensus 469 ~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 469 DLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHH
Confidence 33222222222221 012211111111111110 011 11222234455443433 344555555677
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHH---HHHHHHhhcCCHHHHHHHHHhCC
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYS---CMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
.|..++|.++|..+.+...--|.....+ -+++.-.+....-.|+..++-+.
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7888888888877755433334444444 44455566677777777776553
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.1e-13 Score=154.87 Aligned_cols=433 Identities=11% Similarity=0.000 Sum_probs=262.0
Q ss_pred HHhCCChHHHHHHHHHchhCCCCCCh--hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 044169 193 YAKNALFDQAFSFFLKLDGIDVQPNH--YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMME 270 (742)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (742)
..+.|++..|++.|++..+. .|+. ..+ .++..+...|+.++|...+++... ....+.....++...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 34666667777777666654 3332 122 555555566666666666666551 01111222223344566666666
Q ss_pred HHHHHHhccCCC---CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 271 DAESVFEGLVQR---NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 271 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
+|.++|+++.+. |...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...++.+.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 666666666442 3344555556666666666666666666543 34444443332222223333335555555555
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI 427 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 427 (742)
.. +.+...+..++....+.|-...|.++..+- |+..+-...... +.+.|.+. ++.+..++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~~~~~~l-----~~~~~a~~----vr~a~~~~~------ 258 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSAEHYRQL-----ERDAAAEQ----VRMAVLPTR------ 258 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCHHHHHHH-----HHHHHHHH----Hhhcccccc------
Confidence 43 333444444555555555555555444442 221111100000 00111111 111111100
Q ss_pred HHHhcCCCC---HHHHHHHHHHHHHh-CCCCc-hhH----HHHHHHHHHhcCCHHHHHHHHHhcCCC----CchHHHHHH
Q 044169 428 LKACSLLPS---LATCEQIHSRIVKS-KFESN-VHV----GSSLIEAYNKCGSWEDAERVFSQLTAA----DVVSWNSMI 494 (742)
Q Consensus 428 l~~~~~~g~---~~~a~~i~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li 494 (742)
....+ .+.|..-++.+... +-.|. ... ..--+-++.+.|+..++.+.|+.+..+ ...+-..+.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 01112 23444444444432 11232 111 122345677889999999999999833 233566788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----------CCcH-
Q 044169 495 KAYSQNGRARKAIILFEKMVVEG-----IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGI----------LPEE- 558 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----------~p~~- 558 (742)
.+|...+++++|+.+|+++.... ..++......|.-++...+++++|..+++.+.+.... .|+.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997642 1223334577889999999999999999999762110 1222
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 559 --AHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 559 --~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..+..++..+...|++.+|++.++++. . +.|...+..+...+...|...+|++.++.+..++|++..+...++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 234556788899999999999999875 3 447888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 044169 635 AEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|+|.+|..+.+...+.-
T Consensus 495 l~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhC
Confidence 99999999999887776543
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=5.3e-13 Score=129.57 Aligned_cols=418 Identities=14% Similarity=0.139 Sum_probs=287.4
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHc--cCCChHH-HHHHHHHHHHhCCCCChhHHHHH
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICG--SLSAIDE-GKQLHAQTMKLQYLSKTAVSNAL 259 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l 259 (742)
+++=|.|+.. ..+|....+.-+|+.|...|+..+...-..+++..+ ...++-- -.+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4456666654 457888999999999999998887776666654332 2223221 223333344433 2222232
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 044169 260 LTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGY 339 (742)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 339 (742)
+.|++.+ ++-+...+...+|..||.++++-...+.|.++|++-.....+.+..+|+.+|.+.+-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 3455444 4555555677899999999999999999999999999988899999999999876543 337
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH----HHh---cCCCCChhhHHHHHHHHHhCCCcHH-HHHHHHH
Q 044169 340 MFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQ----LKE---MGKSASSVSWNAQIAGFFRNQKTEE-AIEAFSQ 411 (742)
Q Consensus 340 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~---~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 411 (742)
.+..+|....+.||..++|+++....+.|+++.|..- +.+ +++.|...+|..+|..+++.++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 8899999999999999999999999999988776643 333 3889999999999999999988865 4445555
Q ss_pred HhH----cCCCC----ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCCHHHHH
Q 044169 412 MVR----NDAAC----DEFTYSSILKACSLLPSLATCEQIHSRIVKS----KFESN---VHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 412 m~~----~g~~p----~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~ 476 (742)
++. ..++| |..-|...+..|.+..+.+.|.+++...... -+.|+ ...|..+..+.|.....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 22333 4566888899999999999999998876532 12333 345667888888889999999
Q ss_pred HHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-c--------------
Q 044169 477 RVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG-L-------------- 537 (742)
Q Consensus 477 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~-------------- 537 (742)
..|+.|. -|+..+-..++.+..-.|+++-.-+++..++..|..-+...-.-++..+++.. .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 9999887 35666777788888888999988899988888775444444333333333322 0
Q ss_pred -----HHHHH-HHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHH---HHHHHHHHcC
Q 044169 538 -----VQDGQ-KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPTAPIWR---PLFAACRCHS 604 (742)
Q Consensus 538 -----~~~a~-~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~---~l~~~~~~~g 604 (742)
+.++. ..-.++ ..........++.+-.+.|.|+.++|.+++.-.. .-|-.+..+ -++.+..+.+
T Consensus 499 k~aad~~e~~e~~~~R~---r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQ---RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHhhHHHH---HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 01110 011111 1333445567788888888888888888876542 123333334 4455556666
Q ss_pred CHHHHHHHHHHHHhcC
Q 044169 605 DLKMAEFISKQILELD 620 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~ 620 (742)
+...|..+++-+.+.+
T Consensus 576 spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAFN 591 (625)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7777777777765544
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.1e-11 Score=132.02 Aligned_cols=528 Identities=12% Similarity=0.105 Sum_probs=368.9
Q ss_pred HHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHcc---CCCCCcccHHHHHHHHHhCCChH
Q 044169 124 LSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQ---MPYLDIASCNCLLAGYAKNALFD 200 (742)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~ 200 (742)
..-....|++++|..++..+++.. +.+...|..|..+|-..|+.+.+...+-- ....|..-|-.+-....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 333444599999999999999986 66788999999999999999999876643 34457788999999999999999
Q ss_pred HHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHHhCCChHHHHHHH
Q 044169 201 QAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA----LLTMYIKCGMMEDAESVF 276 (742)
Q Consensus 201 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~ 276 (742)
+|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998864 44544555556778889999999999999988754333333333 345566677778899888
Q ss_pred hccCC--C---CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHH----------------------H----HHH
Q 044169 277 EGLVQ--R---NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYT----------------------F----TVA 325 (742)
Q Consensus 277 ~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------------~----~~l 325 (742)
+.... . +...++.++..|.+...++.|......+......+|..- | .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 87755 2 455689999999999999999999888876222222211 1 123
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhCC
Q 044169 326 LASCASLRNSHMGYMFHAQVIKRGM--ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG---KSASSVSWNAQIAGFFRNQ 400 (742)
Q Consensus 326 l~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g 400 (742)
.-++......+....+......... .-+...+.-+.++|...|++.+|.++|..+- ...+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3344556666666677777777663 4457788899999999999999999999982 2345678999999999999
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV--------KSKFESNVHVGSSLIEAYNKCGSW 472 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~ 472 (742)
..++|.+.|+..+... +-+...-.+|...+...|+.++|.+.+..+. ..+..|.........+.|...|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999988753 2234455667777889999999999988743 334556666666667777777776
Q ss_pred HHHHHHHHhcCC------------------------------------------------------C-----------Cc
Q 044169 473 EDAERVFSQLTA------------------------------------------------------A-----------DV 487 (742)
Q Consensus 473 ~~A~~~~~~~~~------------------------------------------------------~-----------~~ 487 (742)
++=..+-..|.. + ..
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 653332221110 0 01
Q ss_pred hHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHH--H-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH
Q 044169 488 VSW----NSMIKAYSQNGRARKAIILFEKMVVEGI--RPTNS--T-FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE 558 (742)
Q Consensus 488 ~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 558 (742)
.-| .-++.++++.+++++|+.+...+.+... .++.. . =...+.++...+++..|...++.|...++...++
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 112 3356778899999999999988876532 22221 2 2344566778899999999999887754443222
Q ss_pred ---HHHHHHHHHHh-----------------------------------hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 044169 559 ---AHYSCMVDLLG-----------------------------------RAGKLEIALIFISNL-PIKPTAPIWRPLFAA 599 (742)
Q Consensus 559 ---~~~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 599 (742)
..|++..+.+. .++.+..|+..+-+. ...||.+..+.+++.
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 23442222222 234456666554432 245665555554443
Q ss_pred -HH----------HcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 600 -CR----------CHSDLKMAEFISKQILELDPD--DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 600 -~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+. +|-..-++..++.+..++... ...++..++.+|-..|-..-|..++++...-.
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 11 122244566677667666533 56788999999999999999999999987654
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=2.5e-11 Score=124.14 Aligned_cols=513 Identities=10% Similarity=0.068 Sum_probs=396.4
Q ss_pred chHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHH
Q 044169 132 CLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLK 208 (742)
Q Consensus 132 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (742)
+...-.+++...++. ++.++..|.+.+ .....++|+.++.+..+ .+...| -+|++..-++.|..+++.
T Consensus 361 ~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHH
Confidence 333345566666655 455666665544 45667778888876543 233333 455666678888888888
Q ss_pred chhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---
Q 044169 209 LDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQT----MKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--- 281 (742)
Q Consensus 209 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 281 (742)
.++. ++-+...|.+....=-..|+.+....+.++- ...|+..+..-|-.=...+-+.|..-.+..+...+..
T Consensus 432 aRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 432 AREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 8765 6778888888777777788888888887654 3457777777777777777777877777777665532
Q ss_pred ---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 282 ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 282 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
.-..+|+.-...|.+.+.++-|..+|...++. ++-+...|......--..|..+....+++..+..- +.....|-
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwl 588 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWL 588 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHH
Confidence 23457888888999999999899998888764 33445556666555566688888888888888764 34556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 436 (742)
.....+-..|++..|..++... -.+.+...|-+.+.....+.++++|..+|.+.... .|+...|..-+..---.++
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhh
Confidence 6777788889999999988876 21446778999999999999999999999988764 5777777766666667889
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
.++|.++++...+. ++.-...|-.+...+-..++++.|.+.|..-. .| .+-.|-.|...--+.|+.-+|..++++.
T Consensus 667 ~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 667 VEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 99999999988875 34446788889999999999999999998765 34 4457888888888899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 044169 514 VVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIW 593 (742)
Q Consensus 514 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 593 (742)
+-.+ +-+...|...++.-.+.|+.+.|..+..+..+ ..+.+...|..-|.+..+.++-..+.+.+++... |+-+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVl 820 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVL 820 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhH
Confidence 8762 44557899999999999999999999999887 5667778899999999999998888998888764 44455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEE
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEV 666 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 666 (742)
......+.....++.|.+.|+++++.+|++..++..+-..+...|.-++-.+++++..... |.-|..|+.+
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 5666677788889999999999999999999999999999999999999999998877644 4567777654
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=6.4e-11 Score=121.23 Aligned_cols=543 Identities=10% Similarity=0.047 Sum_probs=385.0
Q ss_pred CCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhcc---CCChhHHHHH
Q 044169 82 NGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAV---CGDQFVTASL 158 (742)
Q Consensus 82 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~l 158 (742)
.++...|.-++....+.++. ++..|.+-.+.--..|.+..|+.+ +..|. +.+..+|---
T Consensus 264 l~DikKaR~llKSvretnP~--------------hp~gWIAsArLEEvagKl~~Ar~~----I~~GCe~cprSeDvWLea 325 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK--------------HPPGWIASARLEEVAGKLSVARNL----IMKGCEECPRSEDVWLEA 325 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCchHHHHHHHHHHhhHHHHHHHH----HHHHHhhCCchHHHHHHH
Confidence 34667888888888887776 344444444433344555444443 33332 2233333221
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHH
Q 044169 159 VNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGK 238 (742)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 238 (742)
++....+.|..+..........+-..-+.+---..+...=.+++++.++. ++-+...|.. .....+.+.|+
T Consensus 326 ----iRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~dar 396 (913)
T KOG0495|consen 326 ----IRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDAR 396 (913)
T ss_pred ----HhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHH
Confidence 23344555555554443322222222222222223334444566666554 3334444443 34456677788
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHH----HH
Q 044169 239 QLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCL----MR 311 (742)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~ 311 (742)
-++...++.- +.+... .-+|++...++.|..++++..+ .+...|-+-...--.+|+.+...+++.+ +.
T Consensus 397 ilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~ 471 (913)
T KOG0495|consen 397 ILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQ 471 (913)
T ss_pred HHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 8888887763 333333 3455666778888888877654 4677787777777778888887777654 45
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChh
Q 044169 312 EDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALG--DFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSV 387 (742)
Q Consensus 312 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~ 387 (742)
..|+..+..-|..=...|-..|..-.+..|...++..|+... -.+|..-.+.+.+.+.++-|..+|... -.+.+..
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~s 551 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKS 551 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhH
Confidence 678888888888888889888999999999999988887653 467888888899999999999988776 2245567
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYN 467 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 467 (742)
.|...+..--..|..++-..+|++.... ++-....|.......-..|+...|+.++..+.+.+ +.+..++-+-+....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhh
Confidence 7888777777788889999999998876 34455666666677777899999999999988875 447788888899999
Q ss_pred hcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 044169 468 KCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 468 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
...+++.|..+|.+.. .+....|.--+...--.++.++|++++++.++. -|+. ..|..+...+-+.++.+.|.+.
T Consensus 630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999998876 566677777676667788999999999998884 6776 4577777788888999999888
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
|..=.+ ..+-....|-.|.+.=.+.|.+-.|..++++.. .+.+...|...+..-.+.|+.+.|..+..++++-.|.
T Consensus 708 Y~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 708 YLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 876543 344456678888888889999999999998764 3447888999999999999999999988888775443
Q ss_pred ------------------------------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEE
Q 044169 623 ------------------------------DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWI 664 (742)
Q Consensus 623 ------------------------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 664 (742)
|+.+....+.++....++++|.+.|.+..+.+ ++-|..|.
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa 855 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWA 855 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHH
Confidence 55567788889999999999999999888765 35566664
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=3.5e-13 Score=131.41 Aligned_cols=498 Identities=13% Similarity=0.062 Sum_probs=295.1
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHh----ccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC----CCcc-cHHHHH
Q 044169 120 VIEVLSYCSREECLELGRRYHALITKT----AVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY----LDIA-SCNCLL 190 (742)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~-~~~~li 190 (742)
|-..+.-.-..|+-+.+.--|..-... .+..+-.+...|.+-|.......+|+..++-+.+ +|.- .--.+.
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 444444444445444444333321111 1233334445555566666666666666655432 1111 111223
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhh----HHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYT----YSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (742)
..+.+...+.+|+++|+-....-...+..+ .+.+--.+.+.|.++.|..-|+..++. .|+..+.-.|+-++.--
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 445666667777777765554311122222 222333455677777777777776655 46666555556566666
Q ss_pred CChHHHHHHHhccCC----------------CCcchHHHHH-----HHHHhCC--CcchHHHHHHHHHHCCCCCCHHHHH
Q 044169 267 GMMEDAESVFEGLVQ----------------RNVISWTAII-----NGFKQHG--DYEKPLRLVCLMREDGIDPNEYTFT 323 (742)
Q Consensus 267 g~~~~A~~~~~~~~~----------------~~~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~ 323 (742)
|+-++..+.|.+|.. |+....|.-| .-+-+.+ +.++++-.--++..--+.||-.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa--- 399 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA--- 399 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---
Confidence 777777777766632 1222222222 1111111 1112222212222111222211
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH----HHH-HHHHH
Q 044169 324 VALASCASLRNSHMGYMFHAQVIKRGM-ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW----NAQ-IAGFF 397 (742)
Q Consensus 324 ~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~l-i~~~~ 397 (742)
.--..| ++.+..+-. +.-...-..-...|.+.|+++.|.+++.-.. ..|..+- |.+ +--|.
T Consensus 400 ~g~dwc------------le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~-~kdnk~~saaa~nl~~l~fl 466 (840)
T KOG2003|consen 400 AGCDWC------------LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE-KKDNKTASAAANNLCALRFL 466 (840)
T ss_pred cccHHH------------HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH-hccchhhHHHhhhhHHHHHH
Confidence 000011 111111000 0000111112345778899999998887775 3333222 222 22233
Q ss_pred hC-CCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044169 398 RN-QKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 398 ~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 476 (742)
+. .++..|..+-+...... +-+....+.-....-..|++++|.+.+++.....-.-....|| +.-.+-+.|++++|.
T Consensus 467 qggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeal 544 (840)
T KOG2003|consen 467 QGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEAL 544 (840)
T ss_pred hcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHH
Confidence 33 34556655555443321 2222222222223345789999999999988754222223333 344577889999999
Q ss_pred HHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 477 RVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 477 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
+.|-++. ..++...-.+...|-...+..+|++++-+.... ++.|+.....|...|-+.|+-.+|.+.+-+--+ -
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--y 621 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--Y 621 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--c
Confidence 9998775 567777778888999999999999999888764 455667889999999999999999988765432 4
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPLFAAC-RCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
++-+.++..-|..-|....-+++|+.+|++.. .+|+..-|..++..| ++.|++++|..+|+......|+|...+-.|.
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 56678888889999999999999999999865 799999999999886 5789999999999999999999999999999
Q ss_pred HHHHhcCCH
Q 044169 632 NMYAEAGLQ 640 (742)
Q Consensus 632 ~~y~~~g~~ 640 (742)
+++...|..
T Consensus 702 ri~~dlgl~ 710 (840)
T KOG2003|consen 702 RIAGDLGLK 710 (840)
T ss_pred HHhccccch
Confidence 999888863
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=7.5e-11 Score=125.67 Aligned_cols=484 Identities=13% Similarity=0.094 Sum_probs=327.0
Q ss_pred HHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHH
Q 044169 161 MYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEG 237 (742)
Q Consensus 161 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 237 (742)
.....|+.++|.+++.++.. .+...|-+|...|-+.|+.++++..+-..-... +-|..-|..+.....+.|.+++|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 33444999999999999864 466789999999999999999998875554332 44678899999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCc-c-------hHHHHHHHHHhCCCcchHHHHHHH
Q 044169 238 KQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNV-I-------SWTAIINGFKQHGDYEKPLRLVCL 309 (742)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~ 309 (742)
.-.|.++++.. +++....-.-+..|-+.|+...|.+-|.++.+.++ + .--.++..+...++.+.|++.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999886 56666666678889999999999999998866333 1 223346677788888999999888
Q ss_pred HHHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC---------------------------CCCchHH-HHHH
Q 044169 310 MRED-GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRG---------------------------MALGDFV-GTAI 360 (742)
Q Consensus 310 m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g---------------------------~~~~~~~-~~~l 360 (742)
.... +-..+...++++...+.+...++.+........... +.++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7663 223445566677777777777777776665555422 2223333 1112
Q ss_pred HHHHHhCCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 361 VDMYSGLGEIWEAKKQLKEMG---KSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
--...+.+...+++.-|.... ..-++..|.-+..+|.+.|++.+|+.+|..+.....--+...|-.+...+...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 122233445555554443331 13345667888999999999999999999998876566678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch------------HHHHHHHHHHHcCCHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV------------SWNSMIKAYSQNGRARK 505 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~ 505 (742)
+.|.+.++.+.... +.+..+-..|...|-+.|+.++|.++++.+..||.. .--.....+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998864 445667778889999999999999999998766521 11223456677888777
Q ss_pred HHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHhccCcHHHHHHHHHHh-----HHhcCCCCcH
Q 044169 506 AIILFEKMVVEG-----IRP-----------------TNSTFLAVLSACSHSGLVQDGQKVFESM-----VKEYGILPEE 558 (742)
Q Consensus 506 A~~~~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~~m-----~~~~~~~p~~ 558 (742)
=+.+...|+..+ +-| ...+...+..+-.+.++......-...- ....++.-+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 555555554321 111 1122223333333333322211111110 0111322222
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC
Q 044169 559 --AHYSCMVDLLGRAGKLEIALIFISNLP-----IKPTA---PIWRPLFAACRCHSDLKMAEFISKQILEL-----DPDD 623 (742)
Q Consensus 559 --~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 623 (742)
..+.-++..+++.|++++|+.+...+. ..+.. ..-...+.++...+++..|....+-++.. +|--
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 346678889999999999999987764 22222 12234455677899999999999998886 6655
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHH
Q 044169 624 AAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
...|+...+...+.|+-.-=.+.+
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555543333333
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.7e-10 Score=112.48 Aligned_cols=537 Identities=13% Similarity=0.110 Sum_probs=377.4
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHH
Q 044169 150 GDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLA 226 (742)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 226 (742)
.+...|-...+-=-..++++.|+.+|++... ++...|-.-+..=.++.....|..++++....=...|.. |--.+-
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence 3444455544444556788899999998753 567778888888889999999999999987643233333 223333
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcc--CCCCcchHHHHHHHHHhCCCcchHH
Q 044169 227 ICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGL--VQRNVISWTAIINGFKQHGDYEKPL 304 (742)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 304 (742)
.=-..|++..|+++|+.-.+. .|+...|.+.|+.=.+-..++.|..++++. ..|++.+|-.....-.++|+...|.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 334568999999999988765 799999999999999999999999999986 5689999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHh----ccCChhHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHH--
Q 044169 305 RLVCLMREDGIDPNEYTFTVALASCA----SLRNSHMGYMFHAQVIKRGMAL-GDFVGTAIVDMYSGLGEIWEAKKQL-- 377 (742)
Q Consensus 305 ~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~-- 377 (742)
.+|+...+. -.|..--..++.+++ +...++.|..++...+..-... ....|..+...--+.|+.....+..
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 999988664 223333333344443 4567888888888888763222 2456666666666667654433322
Q ss_pred -Hhc-------CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh-------HHHHHHHHH---hcCCCCHHH
Q 044169 378 -KEM-------GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE-------FTYSSILKA---CSLLPSLAT 439 (742)
Q Consensus 378 -~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~---~~~~g~~~~ 439 (742)
+++ ..+-|-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+ -....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222 21456678888888888889999999999998876 45532 122222112 235678999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHH----HhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLIEAY----NKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
+.++++...+. ++....++.-+=-+| .++.++..|.+++.... .|...+|...|..-.+.++++.+..+|++.
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999883 455566666655555 47889999999999876 677788888898889999999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 044169 514 VVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAP 591 (742)
Q Consensus 514 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 591 (742)
++- .|. ..+|......-...|+.+.|..+|.-++....+......|.+.|+.=...|.++.|..+++++. ..+...
T Consensus 464 le~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred Hhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 984 554 4788888888888999999999999988754444455678899999999999999999999875 455667
Q ss_pred HHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhc----CCC--CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 592 IWRPLFAACR-----CHS-----------DLKMAEFISKQILEL----DPD--DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 592 ~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
+|.++...-. +.+ +...|..+|+++... .|. -...+....++-...|.-.+...+-++
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~ 621 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSK 621 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHh
Confidence 8888776543 344 577889999988763 332 122344455555667776666666666
Q ss_pred HHh-----CCCCCCCccc-EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 044169 650 MKM-----KEISKEPGCS-WIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE 698 (742)
Q Consensus 650 m~~-----~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 698 (742)
|.+ +.+..+.|.+ |-+.. -.++-.+.+.+...++++......+++.
T Consensus 622 mPk~vKKrr~~~~edG~~~~EEy~---DYiFPed~~~~~~~K~LeaA~kWK~q~~ 673 (677)
T KOG1915|consen 622 MPKKVKKRRKIQREDGDTEYEEYF---DYIFPEDASATKNLKILEAAKKWKKQKA 673 (677)
T ss_pred ccHHHHhhhhhhcccCchhHHHHH---HhcCccccccCcchHHHHHHHHHHHHHH
Confidence 642 1233333422 32221 1223333355555666665555555543
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=6.3e-12 Score=132.81 Aligned_cols=523 Identities=15% Similarity=0.086 Sum_probs=310.4
Q ss_pred HHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh
Q 044169 90 SFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIK 169 (742)
Q Consensus 90 ~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 169 (742)
.++-.+...|+. |+..||..++..|+..|+.+.|. ++..|.-..++....+++.++......|+.+
T Consensus 11 nfla~~e~~gi~-------------PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 11 NFLALHEISGIL-------------PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred hHHHHHHHhcCC-------------CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccccc
Confidence 456778888999 99999999999999999999998 9999998888888999999999999999888
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhCCChHH---HHHHHHHch----hCCCCCChhhHHHHHHHHccCC-C------hH
Q 044169 170 SMVAVVKQMPYLDIASCNCLLAGYAKNALFDQ---AFSFFLKLD----GIDVQPNHYTYSTMLAICGSLS-A------ID 235 (742)
Q Consensus 170 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~p~~~t~~~ll~~~~~~~-~------~~ 235 (742)
.+. +|...+|+.|..+|...||... ..+.+.... ..|+..-..-+-..+.+|...- + ..
T Consensus 77 npk-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illl 149 (1088)
T KOG4318|consen 77 NPK-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLL 149 (1088)
T ss_pred CCC-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHH
Confidence 776 6788899999999999999654 222122111 1232222222222222222110 0 00
Q ss_pred HHHHHHHHHHHhCC-CCChhHHHH---HHHHHHh-CCChHHHHHHHhccCC-CCcchHHHHHHHHHhCCCcchHHHHHHH
Q 044169 236 EGKQLHAQTMKLQY-LSKTAVSNA---LLTMYIK-CGMMEDAESVFEGLVQ-RNVISWTAIINGFKQHGDYEKPLRLVCL 309 (742)
Q Consensus 236 ~a~~~~~~~~~~~~-~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 309 (742)
--+.+++...+.+. .|...-++. +++-... ...+++-........+ ++..+|..++..-..+|+.+.|..++.+
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 11222333333321 111111111 1111111 1233343333333433 7888999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH
Q 044169 310 MREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW 389 (742)
Q Consensus 310 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 389 (742)
|++.|++.+..-|-.++-+ .++......+...|...|+.|+..|+.-.+-.....|....+.+. .+....+
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~------sq~~hg~ 300 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG------SQLAHGF 300 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc------cchhhhh
Confidence 9999999998888877765 778888888899999999999999988777666665553332222 2222223
Q ss_pred HHHHHHHHhCCCcHHHHH------------HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CC-
Q 044169 390 NAQIAGFFRNQKTEEAIE------------AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ES- 454 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~------------~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~- 454 (742)
++-..+-+-.| ..|.+ .+++..-.|+.-....|..... ...+|.-+...++...+..-.. .+
T Consensus 301 tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 301 TAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcc
Confidence 33222222223 22222 2222222343333333333222 2235666666666665543211 11
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch-HHHHHHHHHHH---cCCHHHHHHHHHH------------HHH---
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV-SWNSMIKAYSQ---NGRARKAIILFEK------------MVV--- 515 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~------------m~~--- 515 (742)
++..+..++. +.|.+...+... .++ .-.+... ..+..+..++... +..
T Consensus 378 ~V~a~~~~lr------------qyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 378 NVDAFGALLR------------QYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred hHHHHHHHHH------------HHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHH
Confidence 2233333333 333333322221 111 1111111 1111111111111 100
Q ss_pred -cCCCC-------CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 044169 516 -EGIRP-------TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-- 585 (742)
Q Consensus 516 -~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (742)
.-..| -...-+.++..|...-+..++...-+.. ++.-+ + ..|..|++.+....+.++|..+.++..
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~ 520 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTR 520 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhccc
Confidence 00111 1112344455555555555655444333 22122 2 578999999999999999999998875
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 044169 586 ---IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL---DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEP 659 (742)
Q Consensus 586 ---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 659 (742)
..-|..-+..+.....+.+....+..+++.+.+. .|.-..+...+.+.-...|+.+.-.+.++-+...|+.- .
T Consensus 521 d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t 599 (1088)
T KOG4318|consen 521 DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T 599 (1088)
T ss_pred chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c
Confidence 2235556777888888899888998888888763 34446677788888899999999999999999888755 3
Q ss_pred cccE
Q 044169 660 GCSW 663 (742)
Q Consensus 660 ~~s~ 663 (742)
|.-|
T Consensus 600 gPl~ 603 (1088)
T KOG4318|consen 600 GPLW 603 (1088)
T ss_pred ccce
Confidence 5545
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.6e-11 Score=117.18 Aligned_cols=423 Identities=11% Similarity=0.092 Sum_probs=318.2
Q ss_pred HHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 044169 263 YIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGY 339 (742)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 339 (742)
=...+++..|..+|++... +++..|-..+..-.++..+..|..++++....=...|..-|- -+..=-..|++..|.
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHH
Confidence 3345677889999988765 577788888999999999999999999987753333433332 333445679999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc-C-
Q 044169 340 MFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN-D- 416 (742)
Q Consensus 340 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g- 416 (742)
++|+.-.+. .|+...|.+.|+.-.+...++.|..++++. -+.|++.+|-....-=.++|...-|..+|....+. |
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 999987754 799999999999999999999999999997 44899999998888888999999999999887653 1
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHH---Hh-----cC---
Q 044169 417 AACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN--VHVGSSLIEAYNKCGSWEDAERVF---SQ-----LT--- 483 (742)
Q Consensus 417 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~---~~-----~~--- 483 (742)
-.-+...|.+...--.++..++.|..+++...++- +.+ ...|..+...--+-|+....++.. .+ +.
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 01123344444444456778899999999888762 333 455555555544556654444332 22 22
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---hccCcHHHHHHHHHHhHHhcC
Q 044169 484 AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-------TFLAVLSAC---SHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~ 553 (742)
.-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++..++ -
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 235567888888888889999999999999975 666432 121111122 346789999999999875 4
Q ss_pred CCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 554 ILPEEAHYSCMVDLL----GRAGKLEIALIFISNL-PIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
++-...++..+--+| .|+.++..|.+++... ..-|...++...|..-.+.++++....+|++.++-.|.+..++.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 444555665544444 5788999999999864 46788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 044169 629 TLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQ 696 (742)
Q Consensus 629 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (742)
..+..-...|+++.|..+|....+....-.|..-| .....|-...+.+..++.+|+.+.+..++
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw----kaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLW----KAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH----HHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999877655665555 33456666777888999999888776554
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.9e-14 Score=144.83 Aligned_cols=256 Identities=17% Similarity=0.150 Sum_probs=110.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH-HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS-SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
+...+.+.|++++|++++++......+|+...|- .+...+-..++.+.|...++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3556667777777777775544433234444333 34444556777788888888777654 2245566666666 6888
Q ss_pred CHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044169 471 SWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNSTFLAVLSACSHSGLVQDGQKVFES 547 (742)
Q Consensus 471 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 547 (742)
++++|.+++...- .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887664 4566677888888899999999999999877543 244556777888888999999999999999
Q ss_pred hHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 548 MVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 548 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
..+. .+.|......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+.+|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 8763 23346778889999999999998877776653 2345667889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
....+++++...|+.++|.+++++.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887653
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=5.9e-11 Score=125.63 Aligned_cols=618 Identities=10% Similarity=0.014 Sum_probs=313.8
Q ss_pred cccchhhcccCccccCCCccccchhHhhcccc------ccccCCCCCC----ccccHHHHHcccccccccccccCCCcch
Q 044169 18 FPYPVVEQVKPKKCNHRKTVEVKEPFASYSAC------QLFNKSPKRA----GLSTSDLIFNGYMNIEEKGISRNGYSTR 87 (742)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~f~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~g~~~~ 87 (742)
|+..=+.++.-..|..|+-++|.++|..|+.. .+|.-|..++ -..++ .++.++ .+.|+.+.
T Consensus 7 f~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~-~lv~sh--------~~And~En 77 (1088)
T KOG4318|consen 7 FFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFR-GLVASH--------KEANDAEN 77 (1088)
T ss_pred cCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHH-HHHhcc--------cccccccC
Confidence 33344556777788888889999999999854 5566665433 24467 777787 77777766
Q ss_pred HHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHH---HH----HHhccCCC---------
Q 044169 88 NDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHA---LI----TKTAVCGD--------- 151 (742)
Q Consensus 88 a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~---~~----~~~g~~~~--------- 151 (742)
+. . |.+.||..++.+|+..||+..-..+-+ .+ ...|+-..
T Consensus 78 pk-----------e-------------p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~ 133 (1088)
T KOG4318|consen 78 PK-----------E-------------PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIH 133 (1088)
T ss_pred CC-----------C-------------CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcc
Confidence 64 3 778889999999988887654222211 11 12221100
Q ss_pred -----hhHHHHHHHHHHhcCChhHHHHHHccCCC----------------------------------CCcccHHHHHHH
Q 044169 152 -----QFVTASLVNMYAKCGDIKSMVAVVKQMPY----------------------------------LDIASCNCLLAG 192 (742)
Q Consensus 152 -----~~~~~~li~~~~~~g~~~~A~~~f~~~~~----------------------------------~~~~~~~~li~~ 192 (742)
..-....+....-.|-++.+.+++..+|. ++..+|..++.+
T Consensus 134 c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 134 CCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 00011122222333444444444433331 455566666666
Q ss_pred HHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 044169 193 YAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDA 272 (742)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (742)
-.-+|+.+.|..++.+|++.|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+-.+.++|....+
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 66677777777777777777776666655555433 566666667777777777777777776555555554442222
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHH------------HHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 044169 273 ESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVC------------LMREDGIDPNEYTFTVALASCASLRNSHMGYM 340 (742)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 340 (742)
... .+....+++-+..-+-.| ..|.+.++ +..-.|+.-....|.... -....|.-+...+
T Consensus 291 ~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veq 362 (1088)
T KOG4318|consen 291 EEG-----SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQ 362 (1088)
T ss_pred ccc-----cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHH
Confidence 111 111111222222212222 12222221 111122222222222111 1112355555555
Q ss_pred HHHHHHHhCC---CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh---CCCcHHHHHHHHHHhH
Q 044169 341 FHAQVIKRGM---ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFR---NQKTEEAIEAFSQMVR 414 (742)
Q Consensus 341 i~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 414 (742)
+...+..--. ..++..+..++.- .|.+....-+...++ .-.+... .....+..++....+.
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrq------------yFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrk 429 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQ------------YFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRK 429 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHH------------HHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCc
Confidence 5444432111 1112223333333 333332111111111 1111111 1111112222111100
Q ss_pred ------------c----CCCC-------ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 415 ------------N----DAAC-------DEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 415 ------------~----g~~p-------~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
. ...| -...-+.++..|+..-+..++...-+.....-++ ..|..||+.++....
T Consensus 430 ns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdk 506 (1088)
T KOG4318|consen 430 NSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDK 506 (1088)
T ss_pred chHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHH
Confidence 0 0000 0112233444455444444444433333322222 567888888888888
Q ss_pred HHHHHHHHHhcCCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHhccCcHHHHHH
Q 044169 472 WEDAERVFSQLTAADV------VSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPT-NSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 472 ~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
++.|..+.++...++. .-+..+.+.+.+.+....+..+++++.+.- ..|+ ..++.-+++.-+..|+.+...+
T Consensus 507 le~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 507 LEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred HHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 8888888888876544 356777788888888888888888887642 2333 2456667777777788777777
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH---------------------
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAAC--------------------- 600 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~--------------------- 600 (742)
.++-+.. .|+.-+ .-++....+.++...|++.++... .+|.+.....+.+.+
T Consensus 587 l~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f 661 (1088)
T KOG4318|consen 587 LADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKF 661 (1088)
T ss_pred HHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHH
Confidence 7666543 444332 234444556666666665554321 233333322333222
Q ss_pred HHcCCHHHHHHHHH-----------------------HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044169 601 RCHSDLKMAEFISK-----------------------QILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISK 657 (742)
Q Consensus 601 ~~~g~~~~a~~~~~-----------------------~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 657 (742)
.+.|++.++.++.+ ..+++- .+......|...|.+.|+++.|..+|.++. +.|
T Consensus 662 ~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt-~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k 737 (1088)
T KOG4318|consen 662 EKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELT-HELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSK 737 (1088)
T ss_pred HhcccccchhhccccCcccccCCCccccccCccccHHHHHHHH-hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCc
Confidence 22233222222211 000000 012234568889999999999999998876 322
Q ss_pred CCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCCch--------hhhhhhhhhhHHHHHHHhhccCCC
Q 044169 658 EPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTDN--------EKEDRVLYHSERLAVGFGLISLPA 729 (742)
Q Consensus 658 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~--------~~~~~l~~~~~~l~~~~~~~~~~~ 729 (742)
. .+-...+.++++.|.+.-..|+ .+...+.-|.|.-...|+++-+++
T Consensus 738 ~-------------------------~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~ 792 (1088)
T KOG4318|consen 738 S-------------------------PMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQT 792 (1088)
T ss_pred c-------------------------hHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhH
Confidence 2 1223456677887777777882 222233556666677777766654
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3.2e-11 Score=117.94 Aligned_cols=454 Identities=13% Similarity=0.046 Sum_probs=284.7
Q ss_pred HHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHH-HHHHHccCCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHH
Q 044169 189 LLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYST-MLAICGSLSAIDEGKQLHAQTMKLQYLSK----TAVSNALLTMY 263 (742)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~ 263 (742)
|..-|.-+....+|+..|+-..+...-||...+.. +-..+.+.+.+..|..+++..+..-...+ ..+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33456667778999999999988888888766543 34667778889999999988776522212 33445566667
Q ss_pred HhCCChHHHHHHHhccCC--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHH--------HHHHHHhccC
Q 044169 264 IKCGMMEDAESVFEGLVQ--RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFT--------VALASCASLR 333 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------~ll~~~~~~~ 333 (742)
.+.|.+++|+.-|+...+ ||..+--.|+-++..-|+.++..+.|.+|..--..||..-|. .++.-..+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999988755 665553344445556788899999999998654444433221 1111111100
Q ss_pred ChhHHHHHHHHHHHhCCCC---chHHHHHHHH----HHHhCCCHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCCcHHH
Q 044169 334 NSHMGYMFHAQVIKRGMAL---GDFVGTAIVD----MYSGLGEIWEAKKQLKEMGKSAS-SVSWNAQIAGFFRNQKTEEA 405 (742)
Q Consensus 334 ~~~~a~~i~~~~~~~g~~~---~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 405 (742)
.+..|.+..-.. -..+...+|. --...| .+-..+.+..-...+- ...--.-...|.++|+++.|
T Consensus 367 -------~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g-~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 367 -------HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG-CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred -------HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc-cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 011111110000 0000000000 000000 0111111111100000 00001123457899999999
Q ss_pred HHHHHHHhHcCCCCChHHHHH--HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044169 406 IEAFSQMVRNDAACDEFTYSS--ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT 483 (742)
Q Consensus 406 ~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 483 (742)
+++++-+....-+.-+..-+. .+.-.....++..|.+.-+...... .-+......-.+.-...|++++|.+.+.+..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 999998876543332222222 2222223446666766666554321 1222222222233345699999999999998
Q ss_pred CCCchHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH
Q 044169 484 AADVVSWNSMI---KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH 560 (742)
Q Consensus 484 ~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 560 (742)
..|...-.+|. -.+-..|+.++|+..|-++..- +..+......+.+.|....+..+|++++.+.. .-++.|+.+
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHH
Confidence 77776544443 3466789999999999888753 34556677788888999999999999997774 356778889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH-hCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFIS-NLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~-~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.+.|.+.|-+.|+-..|.+..- ... ++.+..+..-|...|....=.+.++..++++--+.|+...-...++.++.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 9999999999999999988754 444 34467777777777777777899999999999999955554555666778899
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
+|.+|.++++.+..+-
T Consensus 675 nyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKF 690 (840)
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999887654
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.9e-11 Score=119.12 Aligned_cols=486 Identities=12% Similarity=0.061 Sum_probs=288.8
Q ss_pred CCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHcc--CCCCCcccHHHHHH
Q 044169 114 LLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQ--MPYLDIASCNCLLA 191 (742)
Q Consensus 114 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~ 191 (742)
..+..-+..+++-+..+.++..|.-+-+.+...+ -|+..---+.++|.-.|++..|..+... +...|..+......
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK 90 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3455556666666666667777777777776655 4455555677888888888888877754 55678888888899
Q ss_pred HHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 044169 192 GYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMED 271 (742)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (742)
.+.+..++++|+.++..-.. .-+...|-..=. +..-..+.+.... . .......+-.-...|......++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~~~~----~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAGEDL----M--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCcccccc----c--ccchhceeeeeeehhhhhccHHH
Confidence 99999999999999873311 111111100000 0000000010000 0 00000111111123344455666
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCC----CCCHHHHHHHHHHH-hccCChhHHHHHHHHHH
Q 044169 272 AESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGI----DPNEYTFTVALASC-ASLRNSHMGYMFHAQVI 346 (742)
Q Consensus 272 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~-~~~~~~~~a~~i~~~~~ 346 (742)
|...|.+....|+..+.++...-.. ..-.+.+.++.+..... +-+......+.... ++..+.+.
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~--------- 228 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES--------- 228 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc---------
Confidence 6666666655555554443322111 11112222222221100 01111111111110 00000000
Q ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHH
Q 044169 347 KRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS 426 (742)
Q Consensus 347 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 426 (742)
..+.++ +-+. +...++........-+-..+++.+.+++++...+.. ++....+..
T Consensus 229 -----------------~~r~~~-----~sl~--~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 229 -----------------LTRNED-----ESLI--GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred -----------------cccCch-----hhhh--hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 000000 0000 113333444444455556666677777766666543 344444444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCCH
Q 044169 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADV---VSWNSMIKAYSQNGRA 503 (742)
Q Consensus 427 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~ 503 (742)
-|..+...|+..+-..+-..+++. .+....+|-++.--|.-.|+..+|++.|.+...-|. ..|-.....|+-.|..
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 444555555554444444444443 355567888888888888999999999988774443 4899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 504 RKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|.+... -.+.|+...+-+.-+....+.+.+|..+|+.
T Consensus 363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 9999998887763 222223344455668888999999999988853 2344566777777777888899999988876
Q ss_pred CC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 584 LP--------IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 584 ~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.. ..+ -.++++.|..+|++.+.+++|+..+++++.+.|.++.++.+++-+|...|+.+.|.+.|.+..-
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 43 122 4667889999999999999999999999999999999999999999999999999999988653
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=5.8e-11 Score=117.73 Aligned_cols=213 Identities=16% Similarity=0.159 Sum_probs=173.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHH
Q 044169 433 LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 433 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
-.|+.-.+.+-++..++.... +...|--+..+|....+.++-...|.+.. +.|+.+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888888888888876532 33337777788999999999999998876 45667787777777888899999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC
Q 044169 510 FEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IK 587 (742)
Q Consensus 510 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 587 (742)
|++.+. +.|.. ..|.-+.-+..+.+.+++++..|++..+ .++.-++.|+-...++...++++.|.+.|+... ..
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999987 56765 5687777788889999999999999977 566677899999999999999999999998743 33
Q ss_pred CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 588 PT---------APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 588 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|+ +.+-..++-.-.+ +|+.+|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 2233333333333 899999999999999999999999999999999999999999998764
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=1.3e-10 Score=122.58 Aligned_cols=276 Identities=12% Similarity=0.095 Sum_probs=197.5
Q ss_pred CCCHHHHHHHHHhcCCCC-Chhh-HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH--HHHHHhcCCCCHHHHHH
Q 044169 367 LGEIWEAKKQLKEMGKSA-SSVS-WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS--SILKACSLLPSLATCEQ 442 (742)
Q Consensus 367 ~g~~~~A~~~~~~~~~~~-~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 442 (742)
.|+++.|++.+...+... ++.. |-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 578888887777663222 2222 322234447888888888888888764 45543332 33556778888899988
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---h--------HHHHHHHHHHHcCCHHHHHHHHH
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADV---V--------SWNSMIKAYSQNGRARKAIILFE 511 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~--------~~~~li~~~~~~g~~~~A~~~~~ 511 (742)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... . .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887765 55677888888889999999999988888773221 1 33333444444555666667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-C
Q 044169 512 KMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-T 589 (742)
Q Consensus 512 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~ 589 (742)
.+.+. .+.+......+..++...|+.++|.+++++..+ ..|+.... ++.+....|+.+++++.+++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345667788888899999999999999988865 34555322 2333345589999999888764 445 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+.....+...|...+++++|.+.++++++..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677888889999999999999999999999 566788999999999999999999886643
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-09 Score=107.29 Aligned_cols=315 Identities=13% Similarity=0.084 Sum_probs=221.1
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH-HHHHHHHHhCCCcHHHHH
Q 044169 329 CASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW-NAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 329 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 407 (742)
..+.|....|...+...+.. -+..|.+.+....-..+.+.+..+....+ ..+...- -.+..+|-...+.+++++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~-~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLP-SDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655432 12333333333333334444433333322 1111111 123355666667788888
Q ss_pred HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044169 408 AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA 485 (742)
Q Consensus 408 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 485 (742)
-.......|+..+...-+....+.-...+++.|+.+|+.+.+... -.|..+|+.++-+-..+..+.--....-.+.+-
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKy 328 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKY 328 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccC
Confidence 888888888766666666666666778899999999999988631 124566766663333222222222222233344
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
.+.|..++..-|.-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|++-++.+++ --+.|-..|-.|
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGL 404 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGL 404 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhh
Confidence 556677778888889999999999999998 46666 5677788889999999999999999875 345577889999
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 642 (742)
..+|.-.+...-|+-+|++.. .+| |...|.+|...|.+.++.++|++.|.+++...--+..++..|+++|-+.++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 999999999999999998864 455 799999999999999999999999999999876678899999999999999999
Q ss_pred HHHHHHHHHh
Q 044169 643 AEEQRKLMKM 652 (742)
Q Consensus 643 A~~~~~~m~~ 652 (742)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999877664
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1.6e-10 Score=121.82 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=138.2
Q ss_pred HHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHH
Q 044169 361 VDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLA 438 (742)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 438 (742)
...+...|+.+.|...+++. .. +.+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 34455555666665555554 11 334455556666666666666666666666665433211 111000
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044169 439 TCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVV 515 (742)
Q Consensus 439 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 515 (742)
...|..++....+..+.+...++++.++ +.++.....+..++...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0112222333333344555666666665 34666777777788888888888888877776
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHH
Q 044169 516 EGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWR 594 (742)
Q Consensus 516 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~ 594 (742)
. .||.... ++.+....++.+++.+..+...+ ..+-|...+.++...+.+.|++++|.+.|++.. ..|+...+.
T Consensus 292 ~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 3 4444221 22333345778888888877765 334455567777888888888888888887754 567877777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.+...+.+.|+.++|.+.+++.+.+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 78888888888888888888877653
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.1e-09 Score=105.12 Aligned_cols=348 Identities=11% Similarity=0.051 Sum_probs=204.4
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHH-HHHHHHHhCCCcchHHH
Q 044169 227 ICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWT-AIINGFKQHGDYEKPLR 305 (742)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~ 305 (742)
.+.+.|....|...+...+..- +..|.+-+....-..+.+.+..+-...+..+...-. -+..++-...+.++++.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666665554321 223333333333333444444443333332222111 23345555566777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhCCCHHH-HHHHHHhcCC
Q 044169 306 LVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMA--LGDFVGTAIVDMYSGLGEIWE-AKKQLKEMGK 382 (742)
Q Consensus 306 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~ 382 (742)
-.+.....|+.-+...-+....+.-...++++|+.+|+++.+...- .|..+|+.++..-..+.++.- |..++.- .
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i-d- 326 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI-D- 326 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh-c-
Confidence 7777777776555544444444455667788888888888776421 244555555433332222221 2222222 2
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSL 462 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l 462 (742)
.-.+.|..++..-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++.+++-+ +.|-..|-.|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGL 404 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGL 404 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhh
Confidence 2234456666666777777888888888777654 2234566667777777777777877777777754 5667777777
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 539 (742)
.++|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.|++....| ..+...+..+...+-+.++.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHH
Confidence 777777777777777777664 4567777778788877778888888877777654 335566777777777777777
Q ss_pred HHHHHHHHhHHhc---CC-CCc-HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 540 DGQKVFESMVKEY---GI-LPE-EAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 540 ~a~~~~~~m~~~~---~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
+|...|+.-++.. |. .|. ...-.-|..-+.+.+++++|......
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 7777776665422 21 221 11122244555666666666654443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=3.9e-11 Score=124.00 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=216.4
Q ss_pred CHHHHHHHHHhcCC-CCChh-hHHHHHHHHHhCCCcHHHHHHHHHHhHcC-C-CCChHHHHHHHHHhcCCCCHHHHHHHH
Q 044169 369 EIWEAKKQLKEMGK-SASSV-SWNAQIAGFFRNQKTEEAIEAFSQMVRND-A-ACDEFTYSSILKACSLLPSLATCEQIH 444 (742)
Q Consensus 369 ~~~~A~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~~~~~~g~~~~a~~i~ 444 (742)
...+|...|.+.+. .+|+. ....+..+|...+++++|.++|+...+.. . .-+..+|.+++-.+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677788877621 33433 33457788999999999999999987753 1 1245677777765432 1222222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 044169 445 S-RIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP 520 (742)
Q Consensus 445 ~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 520 (742)
. .+.+. -+..+.+|-++.++|.-.++.+.|.+.|++..+.| ..+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22332 25668999999999999999999999999988544 46888888888889999999999999885 566
Q ss_pred CH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHH
Q 044169 521 TN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPL 596 (742)
Q Consensus 521 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 596 (742)
.. ..|..+...|.+.++++.|+-.|+.+. .+.|. .....++...+.+.|+.|+|+.++++.. ..| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 65 568888889999999999999999885 45554 5567788899999999999999999864 344 55555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+..+...+++++|...++++.++-|++..++..++.+|-+.|+.+.|..-|.-+.+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66778889999999999999999999999999999999999999999999888776554
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.3e-09 Score=115.58 Aligned_cols=43 Identities=2% Similarity=-0.091 Sum_probs=25.7
Q ss_pred HHHHHHHhcCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 044169 474 DAERVFSQLTA---ADVVSWNSMIKAYSQNGRARKAIILFEKMVVE 516 (742)
Q Consensus 474 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 516 (742)
...+.++..+. .++..+..+...+...|+.++|.+++++..+.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 33444444442 35566666666677777777777777776663
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=3.8e-11 Score=124.07 Aligned_cols=246 Identities=14% Similarity=0.143 Sum_probs=196.0
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSK--FESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
+..+|+..|...... +.-+......+..+|-..+++++++.+|+.+.+.. .--+..+|.+.+--+-+.-.+.--.+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999984443 44455777888899999999999999999998752 123466777776444332222222222
Q ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc
Q 044169 479 FSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP-TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE 557 (742)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 557 (742)
+-.+.+..+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+. .|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 2233355778999999999999999999999999998 677 458899888888999999999999988753 45
Q ss_pred HHHHH---HHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 558 EAHYS---CMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 558 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
+.+|+ .|.-.|.+.++++.|+-.|++.. +.| +.+....+...+.+.|..++|++++++++.++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 55554 56678999999999999999865 666 56666777778999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 044169 633 MYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 633 ~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++...+++++|...++++++--
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999988633
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=1.1e-09 Score=116.25 Aligned_cols=279 Identities=13% Similarity=0.071 Sum_probs=177.7
Q ss_pred hCCCHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh--HHHHHHHHHhcCCCCHHHHH
Q 044169 366 GLGEIWEAKKQLKEMG-KSASS-VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE--FTYSSILKACSLLPSLATCE 441 (742)
Q Consensus 366 ~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~ 441 (742)
..|+++.|.+.+.+.. ..|+. ..+-.......+.|+.++|.+.+.+..+.. |+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777776652 13332 223333456667788888888887766543 333 22333456666777888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHH----HHHHHHHcCCHHHHHHHHHHHH
Q 044169 442 QIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA---DVVSWNS----MIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 442 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~~~~~m~ 514 (742)
..++.+.+.. +.+..+...+..+|...|++++|.+.+..+.+. +...+.. ...++...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8877777764 445667777778888888888888877777632 2222211 1112223333333444555555
Q ss_pred HcC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH---HHHHHHHHhhcCCHHHHHHHHHhCC-CC
Q 044169 515 VEG---IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH---YSCMVDLLGRAGKLEIALIFISNLP-IK 587 (742)
Q Consensus 515 ~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 587 (742)
+.. .+.+...+..+...+...|+.++|.+++++..+. .||... .....-.....++.+.+.+.+++.. ..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 431 1126677777888888999999999999888763 233321 1111122233577778888877643 34
Q ss_pred CC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 588 PT-A--PIWRPLFAACRCHSDLKMAEFISK--QILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 588 p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|+ + ....++...|.+.|++++|.+.++ ...+..| ++..+..++.++.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 4 556788888899999999999999 5677788 55557799999999999999998888754
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=4e-12 Score=127.91 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=67.3
Q ss_pred HhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcC-CCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 365 SGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRND-AACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
...++.++|.+++... ...++...+..++..+.+.++++++.+++++..... .+.+...|......+.+.|+.++|..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555444433 113444445555555666666666666666554322 22344444455555555555555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR 519 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 519 (742)
.++...+.. +.+..+...++..+...|+.+++.+++.... +.|...|..+..+|...|+.++|+..|++..+. .+
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 555555542 2234455555555555555555444444332 334445555555555556666666666555543 12
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 520 PTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 520 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
.|......+..++...|+.++|.++.+++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 23444555555555555555555555444
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=7.3e-09 Score=103.16 Aligned_cols=406 Identities=12% Similarity=0.087 Sum_probs=250.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhCCCCCC-hhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh
Q 044169 188 CLLAGYAKNALFDQAFSFFLKLDGIDVQPN-HYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSK-TAVSNALLTMYIK 265 (742)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 265 (742)
....-|.++|.+++|++.|....+. .|| +..|.....+|...|++++..+--...++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3344566677777777777777663 566 556666666777777777766655555543 233 3344455556666
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHH---------HHHC--CCCCCHHHHHHHHHHHhccCC
Q 044169 266 CGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCL---------MRED--GIDPNEYTFTVALASCASLRN 334 (742)
Q Consensus 266 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~~~ 334 (742)
.|++++|+.= +|-.++..++....-.--+.+++.. |.+. -+-|+.....+.+..+-..-.
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 6777766431 2222333333222221122222221 1111 133555444444443321100
Q ss_pred hhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHhc-------C-C-CCCh------hhHHHHHHHHHh
Q 044169 335 SHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGL-GEIWEAKKQLKEM-------G-K-SASS------VSWNAQIAGFFR 398 (742)
Q Consensus 335 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~-~-~~~~------~~~~~li~~~~~ 398 (742)
. .+...+-..|...-..+=..+... ..+..|...+.+- . . .-|. .+.+....-+.-
T Consensus 267 ~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 P--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred c--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0 000000011111111121122211 1233333333222 0 0 1111 111112222344
Q ss_pred CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 399 NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
.|+.-.|...|+..+.....++.. |..+..+|....+.++..+.|....+.+ +-++.+|..-..++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 688899999999998876544442 7777788999999999999999998875 55677788888888888999999999
Q ss_pred HHhcCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 044169 479 FSQLTA---ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL 555 (742)
Q Consensus 479 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 555 (742)
|++... .++..|-.+..+..+.+++++++..|++..++ ++.-...|+.....+..++++++|.+.|+..++ +.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE 492 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LE 492 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hc
Confidence 998873 35567777777777899999999999999986 444457899999999999999999999999864 23
Q ss_pred Cc---------HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 556 PE---------EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 556 p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
|+ +.+.-.++-.-.+ +++..|.+++++.. ..| ....+.+|...-.+.|+.++|+++|++...+-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33 2223333333333 89999999999864 455 467788999999999999999999999988643
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=2e-07 Score=96.13 Aligned_cols=513 Identities=13% Similarity=0.170 Sum_probs=309.8
Q ss_pred hhHHHHHHhhccccchHHHHHHHHHHHHh-ccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhC
Q 044169 118 QFVIEVLSYCSREECLELGRRYHALITKT-AVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKN 196 (742)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 196 (742)
..|...++....+|++..-+..|+..+.. .+.....+|...+......|-++-+.+++++..+-+...-+--|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35666666666777777777777766654 34445567778888777888888888888887766666677778888888
Q ss_pred CChHHHHHHHHHchhCC------CCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhC
Q 044169 197 ALFDQAFSFFLKLDGID------VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQY--LSK--TAVSNALLTMYIKC 266 (742)
Q Consensus 197 g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~li~~~~~~ 266 (742)
+++++|-+.+....... -+.+...|..+-...++.-+.-....+ +.+++.|+ -+| ...|++|.+.|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 88888888887765321 133444555555555544333322222 22233332 233 45689999999999
Q ss_pred CChHHHHHHHhccCCC--CcchHHHHHHHHHhC----------------CC------cchHHHHHHHHHHCCC-------
Q 044169 267 GMMEDAESVFEGLVQR--NVISWTAIINGFKQH----------------GD------YEKPLRLVCLMREDGI------- 315 (742)
Q Consensus 267 g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~------- 315 (742)
|.+++|.++|++..+. .+.-++.+.++|++- |+ ++-.+.-|+.+.+.+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999876552 233344444444321 11 1122333444333210
Q ss_pred ----CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCC--
Q 044169 316 ----DPNEYTFTVALASCASLRNSHMGYMFHAQVIKRG-----MALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSA-- 384 (742)
Q Consensus 316 ----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 384 (742)
+.+..++..-. -...|+..+....+.+.++.- ...-...|..+...|-..|+++.|..+|++.-..|
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 01111221111 122345555566676666532 11224578889999999999999999999983121
Q ss_pred C----hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCC----------C-------ChHHHHHHHHHhcCCCCHHHHHHH
Q 044169 385 S----SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAA----------C-------DEFTYSSILKACSLLPSLATCEQI 443 (742)
Q Consensus 385 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~~~~~~g~~~~a~~i 443 (742)
. ...|..-...=.++.+++.|+.++++.....-. | +...|...+..--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 1 234555555566778888999888776532111 1 122344445545556788888999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCch-HHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 044169 444 HSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVV-SWNSMIKAYSQ---NGRARKAIILFEKMVV 515 (742)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~ 515 (742)
++.+.+..+.....+. .....+-...-++++.+++++-. -|++. .|+.-+.-+.+ ....+.|..+|++.++
T Consensus 500 YdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999887654333222 22333456677899999999865 34543 78887776654 2368999999999998
Q ss_pred cCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHHHH----Hhh---cCCHHHHHHHHHhC
Q 044169 516 EGIRPTNSTFLAVLS--ACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMVDL----LGR---AGKLEIALIFISNL 584 (742)
Q Consensus 516 ~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~----~~~---~g~~~~A~~~~~~~ 584 (742)
|.+|...-+..|+- .--.-|....|+.+++++.. ++++.. ..|+..|.- |+- .+-+++|++.+
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--- 652 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--- 652 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC---
Confidence 67776643332332 22345888899999998754 555543 346655532 211 11234444332
Q ss_pred CCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHhcCCHHHH
Q 044169 585 PIKPTAPIWRP---LFAACRCHSDLKMAEFISKQILEL-DPD-DAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 585 ~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~y~~~g~~~~A 643 (742)
||..+-.. +...-.+.|..++|..++...-++ +|. +...+.+.-.--.+.|+-+--
T Consensus 653 ---p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 653 ---PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred ---ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHH
Confidence 33222211 222345678888888888877776 443 556677777777777774433
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=2.9e-10 Score=111.31 Aligned_cols=198 Identities=14% Similarity=0.077 Sum_probs=165.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
.....+..+...|...|++++|.+.+++.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 345677788889999999999999998775 3345678888899999999999999999998853 334567777888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~ 608 (742)
.+...|++++|.+.++...+..........+..+..++...|++++|.+.+++.. ..| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999987632223345567788999999999999999998764 333 46778888889999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888999999999999999999999887764
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=9.1e-09 Score=98.17 Aligned_cols=465 Identities=9% Similarity=0.030 Sum_probs=259.5
Q ss_pred hccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHH
Q 044169 127 CSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAF 203 (742)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 203 (742)
+...+|+..|..+++.-...+-+....+.--+...|.+.|++++|..++.-+.+ ++...|--|.-++.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 444567888888877666544333334444556777888999999888876543 45566766776777778888888
Q ss_pred HHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-
Q 044169 204 SFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR- 282 (742)
Q Consensus 204 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 282 (742)
.+-....+ +...-..++...-+.++-++-.+++..+... ..-.-+|.++.--.-.+++|++++.++...
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77655532 2333344555556677777777776665432 223344555555556688888888888664
Q ss_pred -CcchHHHHH-HHHHhCCCcchHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHH
Q 044169 283 -NVISWTAII-NGFKQHGDYEKPLRLVCLMREDGIDPNE-YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTA 359 (742)
Q Consensus 283 -~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 359 (742)
+-...|.-+ -+|.+..-++-+.+++.-.... .||+ ...+.......+.=+-..+.+-...+.+.+-..
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~------- 252 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE------- 252 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-------
Confidence 334444433 4566777777777777766554 2332 233322222222212222222222222221100
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHH
Q 044169 360 IVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLAT 439 (742)
Q Consensus 360 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 439 (742)
++.+..+.+. +.+. -...+.|++++-.+.+. -|.. -..++--|.+.+++.+
T Consensus 253 ----------~~f~~~l~rH-----NLVv----------FrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqe 303 (557)
T KOG3785|consen 253 ----------YPFIEYLCRH-----NLVV----------FRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQE 303 (557)
T ss_pred ----------chhHHHHHHc-----CeEE----------EeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHH
Confidence 0111111100 0000 01223444444333221 1111 1122223444455554
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHHhcC----C-CCchHHHHHHHHHHHcCCHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLI-----EAYNKCGSWEDAERVFSQLT----A-ADVVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
|..+.+.+.- ..|-..+...++ .-......+.-|.+.|+-.- . ..+..-.++...+.-..++++++..
T Consensus 304 A~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 304 AISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4444333211 111111111111 11112223455666665443 1 2233455677777777889999998
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044169 510 FEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-CMVDLLGRAGKLEIALIFISNLPIKP 588 (742)
Q Consensus 510 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p 588 (742)
+.....- +..|...-..+..+.+..|.+.+|+++|-.+.. ..+ .|..+|. .|.++|.++|+.+.|++++-++..+.
T Consensus 382 lnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~ 458 (557)
T KOG3785|consen 382 LNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS 458 (557)
T ss_pred HHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 8888775 444444444578899999999999999977632 122 3445554 56689999999999999999887555
Q ss_pred CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 589 TAPIWRPLFA-ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 589 ~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+..+...+|. -|.+.+.+=-|-+.|+.+-.++| +|..|. |+.....-+|..+....
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAGLFRQLANHK 515 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHHHHHHHHcCC
Confidence 6666555555 49999999999999999988998 555443 44444455565554433
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=1.7e-08 Score=98.54 Aligned_cols=285 Identities=13% Similarity=0.082 Sum_probs=156.9
Q ss_pred CCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 044169 297 HGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQ 376 (742)
Q Consensus 297 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 376 (742)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+...++-+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554333 2334444455555666666666666665554455556666666677777777777766
Q ss_pred HHhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC
Q 044169 377 LKEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFE 453 (742)
Q Consensus 377 ~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~ 453 (742)
.+++ . +...........+|.+.|++.+.+.++..|.+.|.--++..- +
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~----------- 226 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R----------- 226 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------
Confidence 6554 3 556677777888888888888888888888877754332110 0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
....+|..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+.. .+-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 011223333333333333333334444444 3345555566666677777777777777777766666521 222
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL-PIKPTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a 609 (742)
.+.+.++...-++..+...+..+..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++.+.|+.++|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 34555666555555555554333323 34445555555555555555555432 2344444455555555555555555
Q ss_pred HHHHHHHH
Q 044169 610 EFISKQIL 617 (742)
Q Consensus 610 ~~~~~~~~ 617 (742)
.+..++.+
T Consensus 381 ~~~r~e~L 388 (400)
T COG3071 381 EQVRREAL 388 (400)
T ss_pred HHHHHHHH
Confidence 54444444
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=1.6e-06 Score=89.60 Aligned_cols=559 Identities=11% Similarity=0.074 Sum_probs=344.1
Q ss_pred CccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHh--------hccc
Q 044169 59 AGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSY--------CSRE 130 (742)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~--------~~~~ 130 (742)
++-+|- .-|... .. ....+-.-+|++.+..=+. +-..|...|++ |.-.
T Consensus 26 svk~W~-RYIe~k--------~~-sp~k~~~~lYERal~~lp~--------------sykiW~~YL~~R~~~vk~~~~T~ 81 (835)
T KOG2047|consen 26 SVKCWL-RYIEHK--------AG-SPDKQRNLLYERALKELPG--------------SYKIWYDYLKARRAQVKHLCPTD 81 (835)
T ss_pred hHHHHH-HHHHHH--------cc-CChHHHHHHHHHHHHHCCC--------------chHHHHHHHHHHHHHhhccCCCC
Confidence 445566 555544 33 2333455577777665433 55566666633 2222
Q ss_pred cchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC-----CCcccHHHHHHHHHhCCChHHHHHH
Q 044169 131 ECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY-----LDIASCNCLLAGYAKNALFDQAFSF 205 (742)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~ 205 (742)
..+......|+..... .+.-+.+|-..+....+.|++...+..|++... .....|...+.-....+-++-++.+
T Consensus 82 ~~~~~vn~c~er~lv~-mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVF-MHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred hHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 2334444444433322 134567888889999999999999999987532 3456799999998999999999999
Q ss_pred HHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHh------CCCCChhHHHHHHHHHHhCCCh---HHHHHHH
Q 044169 206 FLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKL------QYLSKTAVSNALLTMYIKCGMM---EDAESVF 276 (742)
Q Consensus 206 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~---~~A~~~~ 276 (742)
|++-.+. .| ..-.-.|..++..+++++|.+.+...+.. ..+.+-..|.-+-+..++.-+. -....++
T Consensus 161 yrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 9999763 33 33666778888999999999999877542 2355666777777776665432 2344455
Q ss_pred hccCCC--C--cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------C--
Q 044169 277 EGLVQR--N--VISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLR----------------N-- 334 (742)
Q Consensus 277 ~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~-- 334 (742)
+.+..+ | ...|++|.+-|.+.|.+++|.++|++-... ..+..-|+.+.++|+.-. +
T Consensus 237 R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 237 RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 555442 3 346999999999999999999999987765 233444555555544321 1
Q ss_pred ----hhHHHHHHHHHHHhCC-----------CCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCC------hhhHHH
Q 044169 335 ----SHMGYMFHAQVIKRGM-----------ALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSAS------SVSWNA 391 (742)
Q Consensus 335 ----~~~a~~i~~~~~~~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~------~~~~~~ 391 (742)
++....-|+.+..... +.++..|..-+.. ..|+..+-...+.+. .+.|. ...|..
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 1111122222222110 1111122211111 224444444555444 11111 245788
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----------CCCC---
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACD---EFTYSSILKACSLLPSLATCEQIHSRIVKS-----------KFES--- 454 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----------~~~~--- 454 (742)
+...|-.+|+.+.|..+|++..+-..+-- ..+|..-...-.+..+++.|..+.+...-. +.++
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 88888889999999999988766433221 233444444445666777777777655321 1111
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH
Q 044169 455 ---NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMI---KAYSQNGRARKAIILFEKMVVEGIRPTN-STFLA 527 (742)
Q Consensus 455 ---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 527 (742)
+..+|...++.--..|-++....+++++.+..+.|=..++ .-+-.+.-++++.++|++-+..=-.|+. ..|+.
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 2345555666666778888888888877643332222222 2233456688898888877665334555 35666
Q ss_pred HHHHHhc---cCcHHHHHHHHHHhHHhcCCCCcHH--HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 044169 528 VLSACSH---SGLVQDGQKVFESMVKEYGILPEEA--HYSCMVDLLGRAGKLEIALIFISNLPIKPT----APIWRPLFA 598 (742)
Q Consensus 528 ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~ 598 (742)
.+.-+.+ ...++.|..+|++..+ |.+|... .|-.....=.+-|....|+.++++....-. ...|+.+|.
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6655443 3468999999999986 7776543 233333333456888899999998752222 345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDA--AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
-....=-......+|+++++.-|++- ......+++-.+.|..+.|..++.--.+
T Consensus 631 kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 631 KAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 44333335567889999999888643 3456678888999999999999866544
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=6.9e-09 Score=98.12 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=141.1
Q ss_pred CCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHHH
Q 044169 196 NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSK---TAVSNALLTMYIKCGMMEDA 272 (742)
Q Consensus 196 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 272 (742)
+.+.++|.++|-+|.+.+ +-+..+..++-+.+.+.|.++.|.++|+.+.++.--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887642 22344555677888888999999999988876531111 22335667778889999999
Q ss_pred HHHHhccCCCC---cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 044169 273 ESVFEGLVQRN---VISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRG 349 (742)
Q Consensus 273 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 349 (742)
+.+|..+.+.+ ......|+..|-...+|++|+++-+++.+.|-.+..+-..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-------------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-------------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH--------------------------
Confidence 99999887743 3456678888999999999999998888765443322111
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH
Q 044169 350 MALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI 427 (742)
Q Consensus 350 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 427 (742)
..|.-|...+....+++.|..++.+. .. +..+..--.+...+...|+++.|.+.++...+.+..--+.+...+
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 12223334444445566666666554 11 223333334456666677777777777776665544344455555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHh
Q 044169 428 LKACSLLPSLATCEQIHSRIVKS 450 (742)
Q Consensus 428 l~~~~~~g~~~~a~~i~~~~~~~ 450 (742)
..+|...|+.+++..++..+.+.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc
Confidence 56666666666666665555554
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=2e-09 Score=112.83 Aligned_cols=231 Identities=16% Similarity=0.190 Sum_probs=174.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC
Q 044169 421 EFTYSSILKACSLLPSLATCEQIHSRIVKS-----KF-ESNV-HVGSSLIEAYNKCGSWEDAERVFSQLTA-------AD 486 (742)
Q Consensus 421 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~ 486 (742)
..|...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++.. ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888899999999999988877654 21 2232 3344577889999999999999988751 11
Q ss_pred ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC-CHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 044169 487 ----VVSWNSMIKAYSQNGRARKAIILFEKMVVE-----GIRP-TNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYG-- 553 (742)
Q Consensus 487 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 553 (742)
..+++.|..+|.+.|++++|...+++..+- |..+ ... -++.+...|...+.+++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 237788888999999999988888776532 2222 222 367777789999999999999988766433
Q ss_pred CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 554 ILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP-------I--KP-TAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 554 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
..++ ..+++.|...|...|++++|.++++++. . .+ ....++.+...|.+.++.++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3478999999999999999999998763 1 12 2456788888999999999999999887653
Q ss_pred ----CC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 620 ----DP---DDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 620 ----~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.| +-..+|..|+.+|...|++++|.++.....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44 445678999999999999999999988776
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.7e-08 Score=95.51 Aligned_cols=268 Identities=11% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHH
Q 044169 297 HGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALG---DFVGTAIVDMYSGLGEIWEA 373 (742)
Q Consensus 297 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 373 (742)
+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..|.|.++|+.+.++---+. ....-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567888888888887631 22233334555666667777777777776665421111 22334455666667777777
Q ss_pred HHHHHhcCCCC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChH----HHHHHHHHhcCCCCHHHHHHHHHHH
Q 044169 374 KKQLKEMGKSA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF----TYSSILKACSLLPSLATCEQIHSRI 447 (742)
Q Consensus 374 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~~~ 447 (742)
+.+|..+...+ -..+...++..|-+..++++|++.-+++...+-.+..+ .|.-+...+....+.+.|..+++..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77776663112 23344556666666667777776666666554333322 2222333333344444444444444
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044169 448 VKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLA 527 (742)
Q Consensus 448 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 527 (742)
.+.+ +..+..--.+. ..+...|+++.|.+.++...+.+..--..+...
T Consensus 207 lqa~-~~cvRAsi~lG-------------------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQAD-KKCVRASIILG-------------------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhC-ccceehhhhhh-------------------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 4332 22222333333 444455555555555555554321111233444
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFIS-NLPIKPTAPIWRPLFAAC 600 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~ 600 (742)
|..+|.+.|+.++....+..+.+. .+....-..+.+......-.+.|...+. .+..+|+...+..|+...
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 555555555555555555555331 2233333333333333333344433332 233455555555555543
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=2.1e-08 Score=97.93 Aligned_cols=285 Identities=13% Similarity=0.065 Sum_probs=177.4
Q ss_pred CCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 044169 196 NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESV 275 (742)
Q Consensus 196 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (742)
.|+|.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-+++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766655322 3446666677778888888888888887764456666777777788888888888777
Q ss_pred Hhcc---CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 044169 276 FEGL---VQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMAL 352 (742)
Q Consensus 276 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 352 (742)
.++. ..+++........+|.+.|++.....++..|.+.|+-.|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 6655 335777888888999999999999999999988876655432110
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHH
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMG--KSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKA 430 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 430 (742)
...++..+++-....+..+.-...++..+ ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 01122223332222233333333344331 123344555666777778888888888887777766655222 223
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
+.+.++...-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+.++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 455555555555555444332 2333556666666666666666666666443 4555566666666666666666666
Q ss_pred HHHHHH
Q 044169 509 LFEKMV 514 (742)
Q Consensus 509 ~~~~m~ 514 (742)
.+++..
T Consensus 383 ~r~e~L 388 (400)
T COG3071 383 VRREAL 388 (400)
T ss_pred HHHHHH
Confidence 665544
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=2.8e-07 Score=97.38 Aligned_cols=399 Identities=15% Similarity=0.110 Sum_probs=260.5
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHH-H
Q 044169 247 LQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYT-F 322 (742)
Q Consensus 247 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 322 (742)
..+.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999998754 3556799999999999999999999988765433354333 3
Q ss_pred HHHHHHHh-ccCChhHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhCC-----------CHHHHHHHHHhc----CC
Q 044169 323 TVALASCA-SLRNSHMGYMFHAQVIKR--GM--ALGDFVGTAIVDMYSGLG-----------EIWEAKKQLKEM----GK 382 (742)
Q Consensus 323 ~~ll~~~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~----~~ 382 (742)
-..-..|. +.+.++++..+-..++.. +. ...+..+..+.-+|...- ...++.+.+++. +.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334444 447777777776666652 21 122334444444443321 133455556655 21
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCCCchhHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS-KFESNVHVGSS 461 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~ 461 (742)
.|++.-| +.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|+.+.+..... |.. ......
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hhhchh
Confidence 3333333 33456778899999999999998876778889998888899999999999998866543 211 110001
Q ss_pred HHHHHHhcCCHHHHHHHHHh--------------------------cC--C---CCc-hHHHHHHHHHHHcCCHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQ--------------------------LT--A---ADV-VSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~--------------------------~~--~---~~~-~~~~~li~~~~~~g~~~~A~~~ 509 (742)
-+..-..-++.++|...... +. . .+. .++..+..-... +.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccc
Confidence 11111123344443332221 11 0 011 122222111110 00000000
Q ss_pred HHHHHHcCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 510 FEKMVVEGIRPTN--------STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 510 ~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
. .|...-+.|+. ..|......+.+.+..++|...+.+..+ -.+-....|.-....+...|.+++|.+.|
T Consensus 631 ~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 L-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred c-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 01111122322 1345556678888899999888887743 23344556777778899999999999998
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 582 SNLP-IKP-TAPIWRPLFAACRCHSDLKMAEF--ISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 582 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.... ..| ++++..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++-+.|+.++|.+.|....+-.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8754 566 47888999999999999888888 9999999999999999999999999999999999998877544
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.1e-07 Score=95.31 Aligned_cols=433 Identities=13% Similarity=0.115 Sum_probs=232.1
Q ss_pred HHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--hCC
Q 044169 192 GYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA--LLTMYI--KCG 267 (742)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~~g 267 (742)
-+.++|++++|...-.++...+ +-|...+..-+-++.+.+.+++|..+.+. .+. ..+++. +=.+|| +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcc
Confidence 3445555666666666665543 33344455555555566666666533322 110 011111 123333 466
Q ss_pred ChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChhHHHHHHHHHH
Q 044169 268 MMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEY-TFTVALASCASLRNSHMGYMFHAQVI 346 (742)
Q Consensus 268 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~ 346 (742)
..|+|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-+.. .. ..+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHH
Confidence 77777777775444444455555566677777777777777776554321111 111111111110 00 0111
Q ss_pred HhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHhc--------CC-CCChh--------hHHHHHHHHHhCCCcHHHHH
Q 044169 347 KRGMALG--DFVGTAIVDMYSGLGEIWEAKKQLKEM--------GK-SASSV--------SWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 347 ~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~-~~~~~--------~~~~li~~~~~~g~~~~A~~ 407 (742)
.....|+ -..+-.....+...|++.+|+++++.. .. ..+.. .---+.-.+...|+.++|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1111121 111112233455677777777777665 10 11100 11224456677899999999
Q ss_pred HHHHHhHcCCCCChH----HHHHHHHHhcCCCCHH-HHHHHHHHH-----------HHhCCCCchhHHHHHHHHHHhcCC
Q 044169 408 AFSQMVRNDAACDEF----TYSSILKACSLLPSLA-TCEQIHSRI-----------VKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 408 ~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~-~a~~i~~~~-----------~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
++...+... .+|.. .-|.++..-....-.+ .....++.. ....-.-....-++++.+|. +.
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 999988875 34432 2222332221111111 111111111 00000112223344555554 55
Q ss_pred HHHHHHHHHhcCCCC-chHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHH
Q 044169 472 WEDAERVFSQLTAAD-VVSWNSMIKAYS--QNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 472 ~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
.+.+.++....+... ...+.+++.... +...+.++.+++...-+. .|.. ......+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 667777777776332 334455544333 233577888888777664 4544 344555566788999999999998
Q ss_pred --------HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHHcCCHHHH
Q 044169 547 --------SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--------IKPT-APIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 547 --------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~a 609 (742)
.+.+ .+..| .+...++..|.+.++.+.|..++.+.. ..+. ...|.-+...-.++|+-++|
T Consensus 401 ~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 4432 34444 456678888888888666666554432 2222 22334444445678999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
...++++++.+|+|..+...++.+|+.. +.+.|..+-+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 9999999999999999999999999875 4566665543
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-07 Score=91.82 Aligned_cols=306 Identities=9% Similarity=0.004 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHHhcc--CChhHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcC-CCCCh-hhHH
Q 044169 316 DPNEYTFTVALASCASL--RNSHMGYMFHAQVIK-RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG-KSASS-VSWN 390 (742)
Q Consensus 316 ~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~ 390 (742)
.|...+...-+.+++.. ++-..+.+.+-.+.. .-++-+.....++...|...|+.++|+..|++.. ..|+. ....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 34444444444444433 333333333333333 3456678888899999999999999999999874 12322 2223
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
...-.+.+.|+.++...+...+.... +-+...|..-+...-..++++.|..+-+..++.+ +.+...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 33345567788888877777765532 1122222222333345567777877777776654 344555555567778889
Q ss_pred CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cCcHHHHHHHH
Q 044169 471 SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVL-SACSH-SGLVQDGQKVF 545 (742)
Q Consensus 471 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~ 545 (742)
+.++|.-.|+... +.+..+|..|+.+|...|++.+|.-+-+..... +..+..+...+. ..|.- ...-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999998888765 457789999999999999999999888776654 455556666553 33332 33457888888
Q ss_pred HHhHHhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 546 ESMVKEYGILPEEA-HYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 546 ~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+... .+.|+-. ....+...+.+.|+.++++.++++.. ..||....+.|...+...+.+++|...|..++.++|+|
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8764 4566643 56778889999999999999998854 67899999999999999999999999999999999977
Q ss_pred chhH
Q 044169 624 AAVY 627 (742)
Q Consensus 624 ~~~~ 627 (742)
..+.
T Consensus 505 ~~sl 508 (564)
T KOG1174|consen 505 KRTL 508 (564)
T ss_pred hHHH
Confidence 5543
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=6.5e-11 Score=83.21 Aligned_cols=50 Identities=26% Similarity=0.503 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC
Q 044169 384 ASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433 (742)
Q Consensus 384 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 433 (742)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=9.7e-11 Score=82.34 Aligned_cols=50 Identities=30% Similarity=0.630 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 485 ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=2.9e-08 Score=109.55 Aligned_cols=244 Identities=13% Similarity=0.053 Sum_probs=175.2
Q ss_pred CcHHHHHHHHHHhHcCCCCCh-HHHHHHHHHhc---------CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 401 KTEEAIEAFSQMVRNDAACDE-FTYSSILKACS---------LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++.+.+.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888888765 4443 34444333322 3355789999999888865 556778888888999999
Q ss_pred CHHHHHHHHHhcC--CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 044169 471 SWEDAERVFSQLT--AA-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 471 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 33 4567888899999999999999999999984 66643 33344455666899999999999
Q ss_pred HhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 547 SMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 547 ~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
++.+. ..| +...+..+..+|...|++++|...++++. ..|+ ...++.+...+...| +.+...++.+++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88652 234 34457778899999999999999998864 4454 444555555667777 47777777777643222
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 624 AAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.....+...|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22223367778888888888777 7776554
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.3e-06 Score=83.74 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=137.9
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------HHHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGR-------ARKAII 508 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 508 (742)
+-+.|.+++--+.+. -|.. --.|+-.|.+.+++.+|..+..++.+..+.-|-.-.-.++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345566665554442 2222 23456678999999999999999876665544333333334443 344555
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 044169 509 LFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIK 587 (742)
Q Consensus 509 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (742)
.|+-.-+.+..-|.+ --.++.+++.-..++++.+-++..+.. +=...|... -.+..+++..|.+.+|.++|-++...
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 555443444433332 234455556666788999999988843 333334443 35889999999999999999887621
Q ss_pred --CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcC-CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044169 588 --PTAPIWRPLFAA-CRCHSDLKMAEFISKQILELD-PD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKE 658 (742)
Q Consensus 588 --p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 658 (742)
.|..+|.+++.- |..++..+.|..++ ++.+ |. .......+++-|.+++.+--|.+.|+.+...+..|+
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 356677666554 66788888776654 4443 32 344566678889999999999999999887665443
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=1.9e-08 Score=98.39 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666677777777777777777766542 2234444555555555566666665555555442 2233344444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
|...|++++|.+.| ++.......|. ...+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQF-------------------------------EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHH-------------------------------HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555444 44443211111 12333344444455555555555
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
+++..+. .+.+...+..+...+...|++++|...+++.. .+.+...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5554431 11223344445555555555555555554432 1223334444444455555555555555544443
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.4e-08 Score=102.43 Aligned_cols=214 Identities=15% Similarity=0.083 Sum_probs=151.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHH
Q 044169 435 PSLATCEQIHSRIVKSK-FESN--VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 435 g~~~~a~~i~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
+..+.+..-+..+.... ..|+ ...|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 2222 4567788888999999999999998876 3456789999999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 044169 509 LFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIK 587 (742)
Q Consensus 509 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (742)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999997 56765 67888888899999999999999998753 344332222223445678899999999664311
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQIL-------ELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
-+...|.. .......|+...+ +.++.+. ++.|+.+.+|..++.+|.+.|++++|...|++..+.++
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 12223332 2222334444333 2333333 45666778999999999999999999999999886553
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.5e-09 Score=99.94 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=141.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC 469 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 469 (742)
+-|.++|.+.|.+.+|...|+.-... .|-..||..+-.+|.+..+...|..++..-.+. ++.++....-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR----- 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR----- 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH-----
Confidence 45667777777777777777766554 445555655666666666666666665555443 2233332233333
Q ss_pred CCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 470 GSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 470 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
.+-..++.++|.++|+...+. -..+......+...|.-.++++-|+.+++++.
T Consensus 299 --------------------------i~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 299 --------------------------IHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred --------------------------HHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 444444555555555555443 11222334444444445555555555555554
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 550 KEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP---IKPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
+ .|+ .+.+.|+.+.-++.-.+++|-++.-|++.. .+|+ ..+|-.+.......||+..|.+.|+.++..+|++.
T Consensus 352 q-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 Q-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred H-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 4 233 234445555555555555555555554432 2233 55787887777888999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
..++.|+-+-.+.|++++|..+++...+..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999998877644
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.9e-06 Score=88.11 Aligned_cols=277 Identities=11% Similarity=0.028 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHh
Q 044169 354 DFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKAC 431 (742)
Q Consensus 354 ~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 431 (742)
..+.....+-+...+++.+..++++.+ ..++....+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.--|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 333344444455555566655555554 113444455555556666666666666555655542 33455666666666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHH
Q 044169 432 SLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 432 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
...|..++|++.|....... +.-...|-.+...|+-.|..++|...+.... +.....+--+..-|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 66666666666666554322 1113455556666666666666665554432 1111112223334556666777777
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CC----CCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 509 LFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEY-GI----LPEEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 509 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
.|.+... +-|+ +...+-+.-.....+.+.+|..+|+.....- .+ .....+++.|..+|.+.+++++|+..++
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 7766665 3443 3455555555555666777777766654210 01 1133456677777777777777777777
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 583 NLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 583 ~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+.. .+.+..++.++...|...|+++.|...|.+++-++|++..+-..|..+.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 643 3346667777777777777777777777777777776655555555443
No 72
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.09 E-value=1.6e-10 Score=96.33 Aligned_cols=72 Identities=38% Similarity=0.720 Sum_probs=51.9
Q ss_pred cccEEEEcCEEEEEEeCCCCCCChHHHHHHH-HHHHHHHHHcCCCchh----------hhhhhhhhhHHHHHHHhhccCC
Q 044169 660 GCSWIEVYNKIYRFFSQNKSHSEMPKVYEKL-KQLMQQIEDIGHTDNE----------KEDRVLYHSERLAVGFGLISLP 728 (742)
Q Consensus 660 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~m~~~g~~p~~----------~~~~l~~~~~~l~~~~~~~~~~ 728 (742)
|+||+++ +.|.+|+.+||+...+...+ ......++..|+.+.+ ++..+++||||||+|||++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 7899876 99999999999873333222 1223344444443322 256899999999999999988
Q ss_pred CCCcEEEEecc-CC
Q 044169 729 AKNKFECSRTL-EY 741 (742)
Q Consensus 729 ~~~~~~~~~~~-~~ 741 (742)
+|+||+ ||
T Consensus 77 -----~vvkn~~Rv 85 (116)
T PF14432_consen 77 -----RVVKNLKRV 85 (116)
T ss_pred -----eEEecCCcc
Confidence 999999 87
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.5e-08 Score=91.60 Aligned_cols=163 Identities=17% Similarity=0.103 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+...|.-+|.+.|+...|.+-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 4555778899999999999999999984 6766 6788899999999999999999999865 233456688999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 568 LGRAGKLEIALIFISNLPIKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
+|..|++++|...|++....|+ ..+|..+..+..+.|+.+.|...+++.++++|+.+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998764554 668888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 044169 644 EEQRKLMKMKEI 655 (742)
Q Consensus 644 ~~~~~~m~~~~~ 655 (742)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877664
No 74
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2e-05 Score=85.59 Aligned_cols=465 Identities=14% Similarity=0.148 Sum_probs=266.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCC-CCcccHHH-----HHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHH
Q 044169 155 TASLVNMYAKCGDIKSMVAVVKQMPY-LDIASCNC-----LLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAIC 228 (742)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 228 (742)
+..+.+.|-++|-.+.|++.+..+.. +-++..+. -+..|...-.++.+++.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677888888888888888877653 11111111 1234555567888899999998888888887777777777
Q ss_pred ccCCChHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC----------------
Q 044169 229 GSLSAIDEGKQLHAQTMKL-----------QYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---------------- 281 (742)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------- 281 (742)
...=-.+.-.++|+..... ++..|+.+.-..|.+-++.|++.+.+++.++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 7666667777777765542 3456777778889999999999999988765311
Q ss_pred ---C------------CcchH------HHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHH-------------HHH
Q 044169 282 ---R------------NVISW------TAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTV-------------ALA 327 (742)
Q Consensus 282 ---~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------------ll~ 327 (742)
| |.+.| -..|..|.+.=++.+.-.+.-.+.+..+ +...... +..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHHHH
Confidence 1 11111 1234445544333333333333322211 1111111 122
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH------------------------------------
Q 044169 328 SCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIW------------------------------------ 371 (742)
Q Consensus 328 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~------------------------------------ 371 (742)
-+-+.+++..-...++..+..|. .|..++|+|...|...++-.
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 23333344444444555555553 35666666655555433211
Q ss_pred ----------------------------HHHHHH-----------Hhc-----CCCCChhhHHHHHHHHHhCCCcHHHHH
Q 044169 372 ----------------------------EAKKQL-----------KEM-----GKSASSVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 372 ----------------------------~A~~~~-----------~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~ 407 (742)
--.+++ ++. +...|+..-+..+.++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 111111 000 112223333344455555555556666
Q ss_pred HHHHHhHcCCCC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-----------------------CCCchhHHHHH
Q 044169 408 AFSQMVRNDAAC--DEFTYSSILKACSLLPSLATCEQIHSRIVKSK-----------------------FESNVHVGSSL 462 (742)
Q Consensus 408 ~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-----------------------~~~~~~~~~~l 462 (742)
+++++.-.+... +...-+.++-... ..+...+.+..+++-... +..+....+.|
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 666554322111 1111111111111 111222222222221111 01111111111
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 542 (742)
++ .-+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.|++-.
T Consensus 1085 ie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 11 1233333333333332 3457999999999999999999877542 35567999999999999999999
Q ss_pred HHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 543 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
+++...++ ..-.|... +.|+-+|++.+++.+-.+++. .||..-......-|...+.++.|.-+|.
T Consensus 1154 ~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 99987755 35566655 579999999999999877764 6788888888899999999998888776
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 623 DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
+.+-|..|+..+...|++..|...-++
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677778888888888777654443
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=2.2e-07 Score=97.76 Aligned_cols=232 Identities=15% Similarity=0.158 Sum_probs=135.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc--------C-CCCChhh-HHHHHHHHHhCCCcHHHHHHHHHHhHc---CCCCC----h
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM--------G-KSASSVS-WNAQIAGFFRNQKTEEAIEAFSQMVRN---DAACD----E 421 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~--------~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~ 421 (742)
-|..+|...|+++.|..+++.. + ..|.+.+ .+.+...|...+++++|..+|+++..- ..-++ .
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555555555554443 0 0222222 334667778888888888888876541 11111 2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCch-HHHHHHHHH
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVV-SWNSMIKAY 497 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~li~~~ 497 (742)
.+++.|..+|.+.|++++|...++.+.+ ++++.. .+.+. .++.++..+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHHHHHH
Confidence 2344444445555555555444443322 111100 11111 234455566
Q ss_pred HHcCCHHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC--CCc-HHHHHHH
Q 044169 498 SQNGRARKAIILFEKMVVE---GIRPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEY---GI--LPE-EAHYSCM 564 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~--~p~-~~~~~~l 564 (742)
...+++++|..++++..+. -+.++. .+++.+...|.+.|++++|.++|++++... +- .+. ...++.|
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 6666777776666654432 122222 357788888888888888888888776532 11 222 3457778
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 565 VDLLGRAGKLEIALIFISNLP--------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
...|.+.+++++|.++|.+.. ..|+ ..+|..|...|.+.|+++.|+++.+.+..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 888888888888887776542 3344 56789999999999999999999998874
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=2.9e-08 Score=109.58 Aligned_cols=209 Identities=11% Similarity=0.029 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYN---------KCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRA 503 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 503 (742)
+.++|...++...+.. +.+...+..+..+|. ..+++++|...+++.. +.+...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578889999888753 334556666665544 2345889999999876 34566888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHH
Q 044169 504 RKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
++|...|++..+. .|+. ..+..+..++...|++++|...+++..+ ..|+. ..+..++..+...|++++|+..+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999984 5664 5678888899999999999999999975 34443 23334455677789999999999
Q ss_pred HhCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 582 SNLP--IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 582 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
++.. ..|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8864 2354 4456777778889999999999999998888988888888988888888 478887777654
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=6.8e-06 Score=87.22 Aligned_cols=440 Identities=14% Similarity=0.091 Sum_probs=237.1
Q ss_pred cCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCC-hhhHHH
Q 044169 148 VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPN-HYTYST 223 (742)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ 223 (742)
+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-....-.|+ ...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455777777777777778888887777776542 2345677777777777777777777776554332343 333333
Q ss_pred HHHHHc-cCCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 044169 224 MLAICG-SLSAIDEGKQLHAQTMKLQ--Y--LSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHG 298 (742)
Q Consensus 224 ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 298 (742)
.-+.|. +.+.++++..+-.+++... . ......+-.+.-+|...-. +.+ ++.- +..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~--~~se------R~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QAN--LKSE------RDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCC--ChHH------HHH
Confidence 334443 3456666666555555421 0 1112222222222221100 000 0000 001
Q ss_pred CcchHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 044169 299 DYEKPLRLVCLMREDG-IDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 299 ~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 377 (742)
...++++.+++..+.+ -.|+...|..+ -++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1234555555554442 22333333222 23445566666666666666555555666666666666666666666655
Q ss_pred Hhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc--CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hC
Q 044169 378 KEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN--DAACDEFTYSSILKACSLLPSLATCEQIHSRIVK--SK 451 (742)
Q Consensus 378 ~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~--~~ 451 (742)
+.. ....|-.....-+..-..-++.++++.....+... ...+-.. .++-....+....+.- ..
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-----------~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-----------TLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh-----------hhhhhhhhhhhcccccCccc
Confidence 543 10111111111122222345555555555544331 0000000 0000011111111100 00
Q ss_pred CCCchhHHHHHHHHHH---hcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 044169 452 FESNVHVGSSLIEAYN---KCGSWEDAERVFSQLTAAD------VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 452 ~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
....+.++..+..... +.-..+.....+...+.|+ ...|......+.+.++.++|...+.+... +.|-.
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~ 683 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS 683 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh
Confidence 0111222222222111 1111111111122222233 12566677788899999999988888876 34444
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHH--HHHhCC-CCC-CHHHHHHH
Q 044169 523 -STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALI--FISNLP-IKP-TAPIWRPL 596 (742)
Q Consensus 523 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l 596 (742)
..|......+...|.+++|.+.|.... .+.|+ +....++..++.+.|+..-|.+ ++..+. ..| +...|..+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 556666677888899999999998875 45554 5578899999999998777777 777664 455 68899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
...+.+.|+.++|...|..++++++.+|.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999876553
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2e-05 Score=85.56 Aligned_cols=236 Identities=15% Similarity=0.144 Sum_probs=132.3
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 369 EIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 369 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.++.|.++-++.. .+..|..+..+-.+.|...+|++-|-+ .-|+..|.-++..+.+.|.+++-...+...+
T Consensus 1090 ~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444332 345688888888888888888887765 2467788888999999999988888888777
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044169 449 KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV 528 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 528 (742)
+..-.|.+. +.|+-+|++.+++.+-++++. .||+.....+..-|...|.++.|.-+|... ..|..+
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKL 1226 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHH
Confidence 765555543 578888888888888776643 455555555555555555555555444322 224444
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 608 (742)
...+...|.++.|...-++. .+..+|..+-.++...+.+.-|.-. -+..--...-..-++..|...|-+++
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHH
Confidence 44445555555444433222 1233444444444433333322110 00000112223344555555555555
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
-+.+++..+.+..-+...|..|+-.|++
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 5555555555554455555555555544
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=1.4e-05 Score=83.30 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCcHHHH--HHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 555 LPEEAHY--SCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 555 ~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+|....| -.++.-+-+.|+++.|...++... ..|. +..|..-...+...|+.+.|-..++++.+++-.|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4555544 466778899999999999998764 4555 33455566778889999999999999999986566666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+.-..+..+.++|.++..+..+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7788889999999999988887664
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=2.4e-07 Score=93.45 Aligned_cols=226 Identities=12% Similarity=-0.008 Sum_probs=153.2
Q ss_pred CCcHHHHHHHHHHhHcC-CCCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044169 400 QKTEEAIEAFSQMVRND-AACD--EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 400 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 476 (742)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|....+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677777766532 2222 3446666667778888888888888887764 455788889999999999999999
Q ss_pred HHHHhcC--CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 477 RVFSQLT--AA-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 477 ~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
..|++.. .| +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|.+.|++... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9998876 33 4568888888899999999999999999874 56553222222334456789999999977644 2
Q ss_pred CCCcHHHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-Cc
Q 044169 554 ILPEEAHYSCMVDLLGRAGKL--EIALIFISNL-PI----KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD-DA 624 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~ 624 (742)
..|+... ..++..+ .|+. +++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+|. ..
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3343322 2333333 4444 3334333322 11 12 3457888999999999999999999999999974 34
Q ss_pred hhHHHHHHH
Q 044169 625 AVYVTLSNM 633 (742)
Q Consensus 625 ~~~~~l~~~ 633 (742)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 444444443
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1e-05 Score=86.46 Aligned_cols=428 Identities=13% Similarity=0.097 Sum_probs=224.5
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhh-HHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYT-YSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCG-- 267 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 267 (742)
..+...|++++|++.++.-... -+|..+ +......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 4456778888888888664432 344433 4455577777788888888888877775 344444455555542222
Q ss_pred ---ChHHHHHHHhccCCCC--cchHHHHHHHHHhCCCc-chHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 044169 268 ---MMEDAESVFEGLVQRN--VISWTAIINGFKQHGDY-EKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMF 341 (742)
Q Consensus 268 ---~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 341 (742)
+.+....+++++...- ..+...+.-.+.....+ ..+...+..+...|+++ +|+.+-..|......+....+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 3445555555553321 11111111111111112 12334445555555543 233333333322222222222
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH--HHHHHHHHhCCCcHHHHHHHHHHhHcCCCC
Q 044169 342 HAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW--NAQIAGFFRNQKTEEAIEAFSQMVRNDAAC 419 (742)
Q Consensus 342 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 419 (742)
+...... ....|.+.... ..-..+|+...| .-+...|...|++++|++++++.++. .|
T Consensus 166 ~~~~~~~---------------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tP 225 (517)
T PF12569_consen 166 VEEYVNS---------------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TP 225 (517)
T ss_pred HHHHHHh---------------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CC
Confidence 2221111 00000000000 000113444334 55567788888888888888888775 45
Q ss_pred C-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch----------
Q 044169 420 D-EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV---------- 488 (742)
Q Consensus 420 ~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------- 488 (742)
+ ...|..-...+-+.|++.+|.+.++...... .-|..+-+-.+..+.++|++++|.+++.....++..
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc 304 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQC 304 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHH
Confidence 5 5567777788888888888888888888765 456677777788888899999998888877644411
Q ss_pred HHH--HHHHHHHHcCCHHHHHHHHHHHHHc--CC---CCC----------HHHHHHHHHHHhccCc-------HHHHHHH
Q 044169 489 SWN--SMIKAYSQNGRARKAIILFEKMVVE--GI---RPT----------NSTFLAVLSACSHSGL-------VQDGQKV 544 (742)
Q Consensus 489 ~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~----------~~t~~~ll~a~~~~g~-------~~~a~~~ 544 (742)
.|- -...+|.+.|++..|++-|....+. .+ +-| ..+|..+++..-+... ...|.++
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~i 384 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRI 384 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 332 2356788888888888776655432 01 122 2233333332111111 1234444
Q ss_pred HHHhHHhcCCCC-----------cHHHHHHHHHHH---hhcCCHHHHHHHHH-h----------C----C--CCCCHHHH
Q 044169 545 FESMVKEYGILP-----------EEAHYSCMVDLL---GRAGKLEIALIFIS-N----------L----P--IKPTAPIW 593 (742)
Q Consensus 545 ~~~m~~~~~~~p-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-~----------~----~--~~p~~~~~ 593 (742)
+-.+........ +..--..+..-. .+...-+++...-. + . + ..+|+..
T Consensus 385 Yl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G- 463 (517)
T PF12569_consen 385 YLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG- 463 (517)
T ss_pred HHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-
Confidence 444422100000 000000111000 11111111111110 0 0 0 1122211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
..|+ ....-+++|.++++-+.+..|++..+|..--.+|.+.|++--|.+.+++
T Consensus 464 ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1121 2334578899999999999999999999999999999999998887654
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.8e-08 Score=95.27 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH-HHHHHhc
Q 044169 355 FVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS-SILKACS 432 (742)
Q Consensus 355 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~ 432 (742)
.--+.+...|.+.|.+.+|.+.|+.. ...|-+.+|-.+-+.|.+-.+++.|+.+|.+-.+. .|..+||. .+.+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 33467889999999999999999876 43777889999999999999999999999987764 67777764 3445555
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 044169 433 LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEK 512 (742)
Q Consensus 433 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (742)
..++.+++.++++...+.. +.++. +..++..+|.-.++++-|+..|++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvE-------------------------------aiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVE-------------------------------AIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-Cccce-------------------------------eeeeeeeccccCCChHHHHHHHHH
Confidence 5666666666666665543 22333 333344455555666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-
Q 044169 513 MVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP- 588 (742)
Q Consensus 513 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p- 588 (742)
+++.|+. +...|+.+.-+|...+++|-++.-|++.... --.|+ ..+|..+.....-.|++.-|...|+-.. ..|
T Consensus 350 iLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 6665532 3344555555555566666666665555431 12222 2345556666666666666666665443 222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
+...++.|.-.-.+.|+.+.|..+++.+....|+
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 3556666666666667777777777766666664
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.96 E-value=2.8e-05 Score=81.07 Aligned_cols=422 Identities=13% Similarity=0.090 Sum_probs=234.7
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhC
Q 044169 120 VIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKN 196 (742)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 196 (742)
|-.+++.| ..+++..+.+..+.+++ +.+....+.....-.+...|+-++|......-.. ++.++|..+.-.+-..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44444444 45677777877777776 3344444444444456667889999888776544 4567898888888888
Q ss_pred CChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 044169 197 ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVF 276 (742)
Q Consensus 197 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (742)
.++++|+..|......+ +-|...|.-+--.-++.|+++.......+..+.
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----------------------------- 138 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----------------------------- 138 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----------------------------
Confidence 88999999998887643 223333322222222233333322222222221
Q ss_pred hccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC-CCCCHHHHHHHHH------HHhccCChhHHHHHHHHHHHhC
Q 044169 277 EGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDG-IDPNEYTFTVALA------SCASLRNSHMGYMFHAQVIKRG 349 (742)
Q Consensus 277 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~~g 349 (742)
.......|..+..++.-.|+...|..++++..+.. -.|+...|..... .....|..+.+.+........
T Consensus 139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 11234556666666667777777777777665543 2355544433222 233445555555544332221
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHH-HHHHhCCCcHHHH-HHHHHHhHcCCCCChHHHHH
Q 044169 350 MALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQI-AGFFRNQKTEEAI-EAFSQMVRNDAACDEFTYSS 426 (742)
Q Consensus 350 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ 426 (742)
+......-..-.+.+.+.+++++|..++..+ ...||...|.... .++.+-.+.-+++ .+|....+.- +-.......
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rl 293 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRL 293 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhc
Confidence 1111222334456778888999999888887 2266666665544 3443344444444 5555544321 111111111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH----HHHHhcC--------------CCCch
Q 044169 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAE----RVFSQLT--------------AADVV 488 (742)
Q Consensus 427 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~~~--------------~~~~~ 488 (742)
=++......-.+....++....+.|+++- +..+...|-.-...+-.+ .+...+. .|...
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 11111222233344455666666665542 333333332221111111 1111111 23444
Q ss_pred HHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 489 SWNS--MIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 489 ~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
.|+. ++..|-+.|+++.|..+++.... ..|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-+.-+
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcA 446 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHH
Confidence 5554 56778888999999999998886 477764 466666788889999999999988854 2345655554666
Q ss_pred HHHhhcCCHHHHHHHHHhCC
Q 044169 566 DLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~ 585 (742)
.-..++.+.++|.++.....
T Consensus 447 KYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHccccHHHHHHHHHhh
Confidence 77778888888888876554
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=7.1e-06 Score=89.19 Aligned_cols=544 Identities=12% Similarity=-0.013 Sum_probs=259.5
Q ss_pred CcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 044169 84 YSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYA 163 (742)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (742)
+...|+..|-+..+..+. =...|..+.+.|...-+...|.+.|....+.. ..+...+.+..+.|+
T Consensus 473 ~~~~al~ali~alrld~~--------------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtya 537 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS--------------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYA 537 (1238)
T ss_pred hHHHHHHHHHHHHhcccc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhh
Confidence 356666666666655543 44567777777776667778888888777764 456667788888888
Q ss_pred hcCChhHHHHHHccCCCCCc-----ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHH
Q 044169 164 KCGDIKSMVAVVKQMPYLDI-----ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGK 238 (742)
Q Consensus 164 ~~g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 238 (742)
+..+++.|..+.-...+.+. ..|-...-.|.+.++..+|+.-|+...+.. +-|...|..+..+|.+.|++..|.
T Consensus 538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHH
Confidence 88888888877443333211 122222334556666666666666665543 335556666667777777777777
Q ss_pred HHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHhccCCC----------CcchHHHHHHHHHhCCCcchHHHHH
Q 044169 239 QLHAQTMKLQYLSKT-AVSNALLTMYIKCGMMEDAESVFEGLVQR----------NVISWTAIINGFKQHGDYEKPLRLV 307 (742)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~ 307 (742)
++|..+.... |+. ...--...+-+..|.+.+|...+..+... -..++-.+...+.-.|-..+|.+.+
T Consensus 617 KvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 617 KVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred HhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 7666655432 221 11112222334556666666666554220 0112222222222223222333333
Q ss_pred HHHHH-------CCC-----------------------CCCHHHHHHHHHHHhccCCh---h---HHHHHHHHHHHhCCC
Q 044169 308 CLMRE-------DGI-----------------------DPNEYTFTVALASCASLRNS---H---MGYMFHAQVIKRGMA 351 (742)
Q Consensus 308 ~~m~~-------~g~-----------------------~p~~~t~~~ll~~~~~~~~~---~---~a~~i~~~~~~~g~~ 351 (742)
++-.+ ... .|+.....++..-.-..+.. + .|.+.+ .....+.
T Consensus 695 eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~ 772 (1238)
T KOG1127|consen 695 EKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLA 772 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHh
Confidence 22211 110 11111111111111111111 1 000000 0000011
Q ss_pred CchHHHHHHHHHHHh----CCC----HHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh
Q 044169 352 LGDFVGTAIVDMYSG----LGE----IWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE 421 (742)
Q Consensus 352 ~~~~~~~~li~~~~~----~g~----~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 421 (742)
.+...|..|...|.+ +|. ...|...+.+. -...+...||.|.-. ...|.+.-|..-|-+-.... +-..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 112222222222222 111 12333333332 113344455544333 33334433333333322221 2234
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCchHHHHH
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--------AADVVSWNSM 493 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l 493 (742)
.+|..+.-.|....+++.|...|....... +.+...|--........|+.-++..+|..-. -++..-|-+-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 455555555566666777777666665432 2233333322223334566666666665411 2333444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH--
Q 044169 494 IKAYSQNGRARKAIILFEKMVVE---------GIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-- 562 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-- 562 (742)
..-...+|+.++-+...+++... |.+.+...|........+.+.++.|.+...+...-...+-+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44445566555444333332211 2233335666666666666666666665555432111222333333
Q ss_pred --HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhc
Q 044169 563 --CMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA---AVYVTLSNMYAEA 637 (742)
Q Consensus 563 --~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~ 637 (742)
.+.+.+...|.++.|..-+......-|..+...-+.. .-.|+++++.+.|++++.+--.+. .....++......
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 3445666777787777666555444444444444433 335778888889998887633222 3344455555666
Q ss_pred CCHHHHHHHHHHHH
Q 044169 638 GLQADAEEQRKLMK 651 (742)
Q Consensus 638 g~~~~A~~~~~~m~ 651 (742)
+.-+.|...+-+..
T Consensus 1089 ~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVK 1102 (1238)
T ss_pred ccchHHHHHHHHHH
Confidence 67777766544443
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=4.5e-06 Score=87.32 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=26.3
Q ss_pred cccchHHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCChhHHHHHHccC
Q 044169 129 REECLELGRRYHALITKTAVCGDQ-FVTASLVNMYAKCGDIKSMVAVVKQM 178 (742)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~ 178 (742)
..|++..|...++.. +. .|+. ..|-.+..+....|++--|.+.|..+
T Consensus 456 d~~df~ra~afles~-~~--~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESL-EM--GPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred ccCchHHHHHHHHhh-cc--CccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345666666555433 22 2443 35666666666667666666666443
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-05 Score=79.41 Aligned_cols=386 Identities=9% Similarity=0.005 Sum_probs=241.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhccCCCC-cchHHHHHHHHHhCCCcc-hHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044169 252 KTAVSNALLTMYIKCGMMEDAESVFEGLVQRN-VISWTAIINGFKQHGDYE-KPLRLVCLMREDGIDPNEYTFTVALASC 329 (742)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 329 (742)
+...-.-.+.+|-..++-+.|.....+.+..- ...-|.|+.-+...|.-. ++.--+.+....- +. .+ ..|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~---aL-~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PM---AL-QVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-ch---HH-HHHHHH
Confidence 44445667888888999999999998887743 334444444444443221 2221122221110 00 00 000010
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHh--CCCHHHHHHHHHhc----CCCCChhhHHHHHHHHHhCCCcH
Q 044169 330 ASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSG--LGEIWEAKKQLKEM----GKSASSVSWNAQIAGFFRNQKTE 403 (742)
Q Consensus 330 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~ 403 (742)
.+.+ +..+..---.|-....++........+.+|+. .++-..|...+-.+ ..+.|+.....+...+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 00000011112222233333333444444443 34444444333322 22557788889999999999999
Q ss_pred HHHHHHHHHhHcCCCCChHH----HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044169 404 EAIEAFSQMVRNDAACDEFT----YSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVF 479 (742)
Q Consensus 404 ~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 479 (742)
+|...|++.+.. .|+..+ |..+ +...|+.+....+...+.... ..+...|..-.......++++.|..+-
T Consensus 250 ~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 250 QAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred HHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999987653 344332 3333 345677777777666554421 122233333334445667888999888
Q ss_pred HhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 044169 480 SQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL 555 (742)
Q Consensus 480 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 555 (742)
++..+.| +..+-.-...+...|++++|.-.|+.... +.|. ...|..++..|...|...+|.-.-....+ -++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhh
Confidence 8776443 34444444677889999999999999887 5654 47899999999999999999887777655 233
Q ss_pred CcHHHHHHHH-HHHh-hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 556 PEEAHYSCMV-DLLG-RAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 556 p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
.+..+...+. ..+. ...--++|.+++++.. .+|+ ....+.+...|...|..+.++.++++.+...| |......|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHH
Confidence 4444544442 2222 2223478999998754 6776 56677788889999999999999999999999 778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 044169 632 NMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 632 ~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+...+.+.+|.+.|......+
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999998776543
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3e-05 Score=80.00 Aligned_cols=429 Identities=11% Similarity=0.098 Sum_probs=220.7
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHH--
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTAS-- 157 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 157 (742)
.+.|++++|...-.+++..++. |...+..-+-+....+.++.|..+. ...+. ..+++.
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pd--------------d~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~ 82 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPD--------------DEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFF 82 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCC--------------cHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhh
Confidence 7889999999999999987754 6666666666777778888877433 33321 111222
Q ss_pred HHHHH--HhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCC-ChhhHHHHHHHHccCCCh
Q 044169 158 LVNMY--AKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQP-NHYTYSTMLAICGSLSAI 234 (742)
Q Consensus 158 li~~~--~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~ 234 (742)
+=.+| .+.+..++|...++.....+......-...+.+.|++++|+.+|+.+.+.+..- +...-..++.+-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----- 157 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----- 157 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----
Confidence 23344 478999999999996665565566666677889999999999999997765321 1111112221111
Q ss_pred HHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhCCChHHHHHHHhcc--------CCCCcc----------hHHHHHHH
Q 044169 235 DEGKQLHAQTMKLQYLSKTAVSN---ALLTMYIKCGMMEDAESVFEGL--------VQRNVI----------SWTAIING 293 (742)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~ 293 (742)
+... ..+......| ..+|. ...-.+...|++.+|+++++.. .+.|.. .--.|.-+
T Consensus 158 --~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 --ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred --hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0111 1122222222 22332 2344566789999999998876 221111 12234556
Q ss_pred HHhCCCcchHHHHHHHHHHCCCCCCHHHHHHH---HHHHhccCChhH--HHHHHHHHHHh-----------CCCCchHHH
Q 044169 294 FKQHGDYEKPLRLVCLMREDGIDPNEYTFTVA---LASCASLRNSHM--GYMFHAQVIKR-----------GMALGDFVG 357 (742)
Q Consensus 294 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--a~~i~~~~~~~-----------g~~~~~~~~ 357 (742)
+...|+-++|..+|...+... .+|....... |-+.....++-. ....++..... .-.....--
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999988774 3444322222 222222222222 11111111100 000001111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHH--HhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC
Q 044169 358 TAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGF--FRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP 435 (742)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 435 (742)
+.++.+|. +..+.+.++-...+...-...+.+++... ++...+.++.+++...-+....-........+......|
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 23333333 34455555555553111122333333322 222245666666666544322212334444555566777
Q ss_pred CHHHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCch----HHHHHHHHH
Q 044169 436 SLATCEQIHS--------RIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT------AADVV----SWNSMIKAY 497 (742)
Q Consensus 436 ~~~~a~~i~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~----~~~~li~~~ 497 (742)
+++.|.+++. .+.+.+ ..+.+..+++..|.+.++-+.|..++.+.. ..... .|.-+...-
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 7777777777 333333 233444566666776666666666555432 11111 122222222
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.+.|+.++|..+++++.+. .++|..+...++.+|++. +++.|..+
T Consensus 469 lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 3445555555555555543 233444444455554443 33444333
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.85 E-value=9.8e-06 Score=84.89 Aligned_cols=255 Identities=15% Similarity=0.144 Sum_probs=119.1
Q ss_pred HhCCCHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHH
Q 044169 365 SGLGEIWEAKKQLKEMGKSAS-SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQI 443 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i 443 (742)
....++.+|..+++.+..+.. .--|..+...|+..|+++.|.++|-+.- .++-.|..|.+.|.++.|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 344445555555554431111 1123344445555555555555554321 123334445555555555444
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-
Q 044169 444 HSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN- 522 (742)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 522 (742)
-.+.. |....+..|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..++.+++.++- .|+.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 33322 1222334444444445556666666666665555554 345566666666666555542 2222
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHH-
Q 044169 523 -STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI----KPTAPIWRPL- 596 (742)
Q Consensus 523 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l- 596 (742)
.|...+..-+...|+++.|.+.|-+.. -|.+-+++|-..+-+++|..+-+.-.. +.-...|..-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 344444555555666666666554442 134445555555666666555543220 0011122111
Q ss_pred -----HHHHHHcCCH-------------HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 597 -----FAACRCHSDL-------------KMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 597 -----~~~~~~~g~~-------------~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+..+.++|-+ +-|..+.+...+ ..-+.+...++.-+...|++++|.+-+-+..+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 1112233333 333333322222 12345666677777777888887666555443
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.4e-05 Score=75.17 Aligned_cols=407 Identities=13% Similarity=0.092 Sum_probs=214.7
Q ss_pred hhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHH-HHHHH
Q 044169 218 HYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--RNVISWTA-IINGF 294 (742)
Q Consensus 218 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~ 294 (742)
..-+.+++..+.+..+++.|.+++..-.+.. +.+..-.+.|..+|-+..++..|-..++++.+ |...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3344555555555566666666665544432 22444556666677777777777777776644 22222222 13455
Q ss_pred HhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Q 044169 295 KQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASC--ASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWE 372 (742)
Q Consensus 295 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 372 (742)
.+.+.+.+|+++...|.+. |+...-..-+.+. -+.+++..+..+.++....| +..+.+...-...+.|+.+.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5667777788777777542 2222211112221 22344444444444432211 22223333334456677777
Q ss_pred HHHHHHhc----CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHH-HH---HHHHHhcCCCCHHHHHHHH
Q 044169 373 AKKQLKEM----GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFT-YS---SILKACSLLPSLATCEQIH 444 (742)
Q Consensus 373 A~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~---~ll~~~~~~g~~~~a~~i~ 444 (742)
|.+-|+.. + -.....||..+..| +.|+.+.|+++..++.+.|++-.+.. .. -.+.+ ...|+ -..++
T Consensus 163 AvqkFqaAlqvsG-yqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh 236 (459)
T KOG4340|consen 163 AVQKFQAALQVSG-YQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLH 236 (459)
T ss_pred HHHHHHHHHhhcC-CCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHH
Confidence 77777665 3 33345566555443 45667777777777777775432210 00 00000 00000 00000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 044169 445 SRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR 519 (742)
Q Consensus 445 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 519 (742)
.. .-+..+|.-...+.+.|+.+.|.+.+..|++ .|++|...+.-.- ..+++.+..+-+.-+.+. .
T Consensus 237 ~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--n 306 (459)
T KOG4340|consen 237 QS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--N 306 (459)
T ss_pred HH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--C
Confidence 00 0122334444456788999999999999983 4777766553321 245566666666666654 3
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCcHHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044169 520 P-TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGI-LPEEAHYSCMVDLLGR-AGKLEIALIFISNLPIKPTAPIWRPL 596 (742)
Q Consensus 520 p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l 596 (742)
| ...||..++-.|++..-++.|-.++.+-.. .-+ -.+...|+ |++++.- .-..++|.+-++.+...-....-..-
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklA 384 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLA 384 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 347999999999999999999888755311 000 01222233 4444443 34566776665544200000000111
Q ss_pred HHH--HHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 597 FAA--CRCHSD---LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 597 ~~~--~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+.. -...++ ...+.+-++..+++. ..+....++.|++..++.-+.++|+...+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 111 111121 234555566666653 23677888999999999999999987654
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=2.9e-05 Score=74.53 Aligned_cols=308 Identities=13% Similarity=0.111 Sum_probs=166.8
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHH---HHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLVQRNVISWTAII---NGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLR 333 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 333 (742)
--|...+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=|.+.++. +||-..-..
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi--------- 110 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI--------- 110 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH---------
Confidence 34555666778888888888888888888777765 5677888888888878777763 666432211
Q ss_pred ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHH
Q 044169 334 NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQM 412 (742)
Q Consensus 334 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 412 (742)
++| ..+.+.|.++.|..-|+.+ ...|+..+ ...++.+. .+.+++
T Consensus 111 -------------QRg------------~vllK~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl-------~~~~e~ 155 (504)
T KOG0624|consen 111 -------------QRG------------VVLLKQGELEQAEADFDQVLQHEPSNGL---VLEAQSKL-------ALIQEH 155 (504)
T ss_pred -------------Hhc------------hhhhhcccHHHHHHHHHHHHhcCCCcch---hHHHHHHH-------HhHHHH
Confidence 111 1234566666666666655 11222111 01111111 111111
Q ss_pred hHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchH
Q 044169 413 VRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVS 489 (742)
Q Consensus 413 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 489 (742)
. .....+..+...|+...++.....+.+.. +.|...+..-..+|...|++..|+.-+.... ..+...
T Consensus 156 ~---------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~ 225 (504)
T KOG0624|consen 156 W---------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG 225 (504)
T ss_pred H---------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence 1 11222333445566666776666666643 5566667777777777777777776555443 445555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHH---------HHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTF----LAV---------LSACSHSGLVQDGQKVFESMVKEYGILP 556 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p 556 (742)
.--+-..+...|+.+.++...++-++ +.||.... ..+ +......+.|-++.+..+...+ ..|
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep 300 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEP 300 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCC
Confidence 55566667777888777777777766 56766321 111 0012223344444444444432 122
Q ss_pred c-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 557 E-----EAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 557 ~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
. ...+..+-.++...|++-+|+....+.. ..|| +.++.--..+|.-...++.|+.-|+++.+.+|+|..
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 2 1122334445555556666665555433 3333 444555555555555566666666666666655443
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=2.8e-06 Score=77.23 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=90.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHH
Q 044169 430 ACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKA 506 (742)
Q Consensus 430 ~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 506 (742)
.|...|+...|..-++..+++. +.+..++..+...|.+.|+.+.|.+.|++.. +.+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444432 2233444444445555555555555554433 22333444444455555555555
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 507 IILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 507 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
...|++....-.-|.. .||..+.-+..+.|+.+.|.+.|++.++. .+-.....-.+.+.....|++-.|..+++...
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 5555555543222221 34444444445555555555555555431 11122234445555555555555555555432
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 586 --IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 586 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
..++..+....+..-...||.+.+.+.-.++....|.+
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 23444444444555555566555555555555555543
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=7.5e-06 Score=87.44 Aligned_cols=124 Identities=13% Similarity=0.022 Sum_probs=78.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACR 601 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 601 (742)
+..+...|...|++++|+++.++.+.. .|+ +..|..-+..|-+.|++++|.+.++... ...|-.+-+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344455566777777777777766542 343 5566667777777777777777776654 2234444445555666
Q ss_pred HcCCHHHHHHHHHHHHhcC--CC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELD--PD-------DAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~--p~-------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+.|+.++|++.+......+ |. ........+.+|.+.|++..|.+.|..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777777777665543 21 12334567788888888888887666554
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.4e-06 Score=83.55 Aligned_cols=216 Identities=15% Similarity=0.100 Sum_probs=136.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch---HHH-------HHH
Q 044169 425 SSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV---SWN-------SMI 494 (742)
Q Consensus 425 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~-------~li 494 (742)
..+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.+....-....+.... -|+ .+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555566666777777777666654 45555566666777777766665554443322111 122 233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH-HHHHHHHHhhcCC
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH-YSCMVDLLGRAGK 573 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~~~g~ 573 (742)
.+|.+.++++.|+..|.+.+.....||..+ +....+++....... .-+.|+... ...=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888766544444321 122333343333332 123343321 1222566778888
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 574 LEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+..|+..+.++. ..| |...|.....+|.+.|++..|..-.+..++++|+....|..-+.++....+|++|.+.|.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887754 334 577778888888888888888888888888888888888888888888888888888887766
Q ss_pred hCC
Q 044169 652 MKE 654 (742)
Q Consensus 652 ~~~ 654 (742)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 544
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=0.00023 Score=76.09 Aligned_cols=82 Identities=9% Similarity=0.073 Sum_probs=48.5
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 044169 285 ISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMY 364 (742)
Q Consensus 285 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 364 (742)
..|.-....+-..|+.+.|+.+|...++ |-++++..+-.|+.++|.+|-++ ..|....-.|.++|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHh
Confidence 3344444444556667777776666543 33455555666777766666544 22444455566777
Q ss_pred HhCCCHHHHHHHHHhcC
Q 044169 365 SGLGEIWEAKKQLKEMG 381 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~~ 381 (742)
...|++.+|..+|.+..
T Consensus 978 En~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 77777777777776653
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.77 E-value=2.7e-05 Score=84.90 Aligned_cols=552 Identities=11% Similarity=0.034 Sum_probs=297.6
Q ss_pred cccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHH
Q 044169 61 LSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYH 140 (742)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (742)
..|. .|...| ....+-.+|...|++..+.+.. +......+...+++..+++.|..+.
T Consensus 493 paf~-~LG~iY--------rd~~Dm~RA~kCf~KAFeLDat--------------daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 493 PAFA-FLGQIY--------RDSDDMKRAKKCFDKAFELDAT--------------DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHH-HHHHHH--------HHHHHHHHHHHHHHHHhcCCch--------------hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4678 888888 6666888999999999887765 7888889999999999999998883
Q ss_pred HHHHHhc-cCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCC
Q 044169 141 ALITKTA-VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQP 216 (742)
Q Consensus 141 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 216 (742)
-..-+.. ...-..-|-.+.-.|.+.++...|..-|+...+ .|..+|..+..+|...|++..|+++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 2222111 000111233345567778899999998887653 47788999999999999999999999888653 45
Q ss_pred ChhhHHHHH--HHHccCCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCChHHHHHHHhccC--------
Q 044169 217 NHYTYSTML--AICGSLSAIDEGKQLHAQTMKLQ------YLSKTAVSNALLTMYIKCGMMEDAESVFEGLV-------- 280 (742)
Q Consensus 217 ~~~t~~~ll--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 280 (742)
+. +|.... ..-+..|.+.++...+...+... ...-..++-.+...+.-.|-...|.+.|+.-.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 43 222222 23356788999888887766531 11111222222222222343344444443321
Q ss_pred ---CCCcchHHHHHHHHHhCCCcc--h----HHHHH-HHHHHCCCCCC--------------------HHHHHHHHHHHh
Q 044169 281 ---QRNVISWTAIINGFKQHGDYE--K----PLRLV-CLMREDGIDPN--------------------EYTFTVALASCA 330 (742)
Q Consensus 281 ---~~~~~~~~~li~~~~~~g~~~--~----A~~~~-~~m~~~g~~p~--------------------~~t~~~ll~~~~ 330 (742)
..+...|-.+-+++.-.-..+ . .+.+| .+....+.-|+ ..++..+...+.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 123333333332221111000 0 01111 11222222222 222222222211
Q ss_pred c-------cCC-hhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCC
Q 044169 331 S-------LRN-SHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQ 400 (742)
Q Consensus 331 ~-------~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g 400 (742)
+ .+. ...|...+...++.. .-+..+|++|--. ...|.+.-|...|-+- ..+.+..+|..+.-.+.++.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 111 112333333333321 2234455555433 5567777777666543 22566778888888889999
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV----KSKFESNVHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~ 476 (742)
+++-|...|...+... +.|...|..........|+.-+...+|..-- ..|-.++...+-+........|+.++-.
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999998877643 3345555554444455666666666665521 2233455555555555556666666555
Q ss_pred HHHHhcC-------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHhccCcH
Q 044169 477 RVFSQLT-------------AADVVSWNSMIKAYSQNGRARKAIILFEKMVVE-GIRPTNSTFLAV----LSACSHSGLV 538 (742)
Q Consensus 477 ~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l----l~a~~~~g~~ 538 (742)
..-+.+. +.+...|.+.....-+.+.++.|.++..+...- ..+-|..+|+.+ .+.+...|.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 4444443 123346666666666666677776666654321 013333444432 2233444555
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHH--HHhhcCCHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVD--LLGRAGKLEIALIFISNLP----IKPT-APIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
+.|..-+.. .|-..--..+.. ...-.|+++++.+.|++.. ...| +.....++......+..+.|..
T Consensus 1024 e~A~~a~~~-------~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1024 ESAKKASWK-------EWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhHhhhhcc-------cchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 544433222 111111011111 1133677777777777753 2233 2333444444556666677777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 612 ISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
.+-+...+.|.+......|..++.-..+-....-+.+
T Consensus 1097 lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaile 1133 (1238)
T KOG1127|consen 1097 LLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILE 1133 (1238)
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHH
Confidence 7777777766566666666655544444333333333
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=7.3e-07 Score=88.55 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=151.2
Q ss_pred HHhCCCHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCE 441 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 441 (742)
+.-.|.+..+..-.+.-+..+ +......+.+++...|+++.++ .++.... .|....+..+...+....+.+.+.
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 344566666665444211112 2233445667777777766544 3333332 566666655555555544444444
Q ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 044169 442 QIHSRIVKSKFE-SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP 520 (742)
Q Consensus 442 ~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 520 (742)
.-++........ .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 444333222222 23333344445677789999998888765 4566666778889999999999999999986 344
Q ss_pred CHHHHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 521 TNSTFLAVLSACS----HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 521 ~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
|. +...+..++. ..+.+++|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+.. ..| ++.++.
T Consensus 163 D~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 163 DS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 44 3334444433 23468889999998854 455777788888888888888888888887643 334 456666
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHhcCCCCch
Q 044169 595 PLFAACRCHSDL-KMAEFISKQILELDPDDAA 625 (742)
Q Consensus 595 ~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 625 (742)
.++-.....|+. +.+.+...++....|+++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 677766777766 6677788887778886553
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=3.8e-05 Score=80.50 Aligned_cols=260 Identities=10% Similarity=0.012 Sum_probs=151.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHH---HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS---ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC 469 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 469 (742)
...+...|++++|.+.+++..+.. +.|...+.. ........+..+.+.+.+... ....+........+...+...
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 345566788888888888777653 222323321 111122234445555544431 111122234445566677888
Q ss_pred CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHHHH
Q 044169 470 GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-RPTN--STFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 470 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 543 (742)
|++++|.+.+++.. +.+...+..+...|...|++++|...+++.....- .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888776 33455677778888888888888888888776421 1232 235566777888888888888
Q ss_pred HHHHhHHhcCCCCcHHHH-H--HHHHHHhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044169 544 VFESMVKEYGILPEEAHY-S--CMVDLLGRAGKLEIALIF---ISN---L-PIKPTAPIWRPLFAACRCHSDLKMAEFIS 613 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 613 (742)
++++........+..... + .++..+...|..+.+... ... . ..............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888874321111222111 1 223333444432222222 111 1 11111222234555677888888898888
Q ss_pred HHHHhcC-C--------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 614 KQILELD-P--------DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 614 ~~~~~~~-p--------~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+.... . .........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876532 1 134456777888999999999999998877544
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.5e-07 Score=94.77 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=158.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHH
Q 044169 433 LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 433 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
+.|++.+|.-.|+..++.. +-+...|-.|.......++-..|+..+.+.. ..|....-.|.-.|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666666666555543 4455666666666666666666666666655 23445666666677777777788887
Q ss_pred HHHHHHcCCCCCHHHHHH-----H---HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 510 FEKMVVEGIRPTNSTFLA-----V---LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 510 ~~~m~~~g~~p~~~t~~~-----l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
++.-+.. .|...-... - -..+.....+....++|-++....+.++|..+..+|.-.|--.|+++.|++.|
T Consensus 376 L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7776543 111100000 0 01223333455667777777776677789999999999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 582 SNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 582 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+... .+| |...||-|....+.....++|+..|.+++++.|.-..+...|+-.|...|.|+||.+.|=....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9864 566 6888999999999999999999999999999999999999999999999999999998766553
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.0013 Score=78.50 Aligned_cols=259 Identities=12% Similarity=0.028 Sum_probs=138.7
Q ss_pred HHhCCCcHHHHHHHHHHhHcCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHH
Q 044169 396 FFRNQKTEEAIEAFSQMVRNDAACDE----FTYSSILKACSLLPSLATCEQIHSRIVKS----KFE-SNVHVGSSLIEAY 466 (742)
Q Consensus 396 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~ 466 (742)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |-. ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 33455555555555554432111111 12233334445566666666655554432 100 0112334445556
Q ss_pred HhcCCHHHHHHHHHhcCC-------CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 044169 467 NKCGSWEDAERVFSQLTA-------AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVE--GIRPT--NSTFLAVLSA 531 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a 531 (742)
...|++++|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 666777777666654431 11 112334445566667888877777766542 11122 1234444556
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHY-----SCMVDLLGRAGKLEIALIFISNLPIK--PTA----PIWRPLFAAC 600 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~ 600 (742)
....|++++|.+.++..............+ ...+..+...|+.+.|...+...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 667788888887777764321111111111 11224445578888888887665411 111 1134455567
Q ss_pred HHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 601 RCHSDLKMAEFISKQILELD------PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|+.++|...++++++.. +....++..++.+|...|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888888888888887642 1223467778888888888888888888877543
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=3e-07 Score=91.29 Aligned_cols=245 Identities=15% Similarity=0.072 Sum_probs=163.1
Q ss_pred HHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044169 394 AGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWE 473 (742)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 473 (742)
+-+.-.|.+..++.-.+ .....-..+..+...+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886555 222222223445556777888888866433 3343333 666666655555554445666
Q ss_pred HHHHHHHhcC-CCC---chHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 474 DAERVFSQLT-AAD---VVSWNS-MIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 474 ~A~~~~~~~~-~~~---~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
.+..-+++.. .+. -.++.. ....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665544 221 112222 234455689999999988642 44566777788999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 549 VKEYGILPEEAHYSCMVDLL----GRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.+ +..|. +...++.++ .-.+++.+|..+|+++. ..+++.+.+.+..++...|++++|+.+++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 53 33443 333444433 33447999999999975 3467888889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 044169 623 DAAVYVTLSNMYAEAGLQ-ADAEEQRKLMKMK 653 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~~ 653 (742)
++.+...++-+....|+. +.+.+++.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999998 6677888887753
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=4.5e-05 Score=81.26 Aligned_cols=259 Identities=11% Similarity=0.055 Sum_probs=157.7
Q ss_pred CChhHHHHHH--HHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhC-C--------CCCCh
Q 044169 150 GDQFVTASLV--NMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGI-D--------VQPNH 218 (742)
Q Consensus 150 ~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~~ 218 (742)
-|..+..+++ +.|..-|+.+.|.+-.+-+. .-..|..|.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 4566666665 34667788888877766554 3456888888888888777777776666431 1 1122
Q ss_pred hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-CcchHHHHHHHHHhC
Q 044169 219 YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR-NVISWTAIINGFKQH 297 (742)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 297 (742)
.+=.-+.-.....|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-..- =..+|.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222223333456788999999998887653 3445677789999998876543221 123566666666677
Q ss_pred CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 044169 298 GDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 298 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 377 (742)
++.+.|++.|++-.. |--..+..|. .++...++..+. ..|...|.-....+...|+++.|+.++
T Consensus 872 ~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888876421 1111111111 011111111111 224455555555566678888888887
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 378 KEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 378 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.... -|-++++..|-.|+.++|-++-++ .-|....-.+.+.|-..|++.+|..+|.+..
T Consensus 936 ~~A~------D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSAK------DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhh------hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7754 466677777778888888777665 2355555567777777777777777776554
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=4.4e-06 Score=93.72 Aligned_cols=217 Identities=12% Similarity=0.118 Sum_probs=177.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-H
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--------ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-S 523 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 523 (742)
+.+...|-..+......+++++|++++++... .-.-.|.+++..-...|.-+...++|+++.+. -|. .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 44567777788888889999999999988762 12347888888888889889999999999873 344 5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP---TAPIWRPLFAA 599 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~ 599 (742)
.|..|...|.+.+.+++|.++++.|.+.++ .....|..+++.+.+..+-+.|..++.+.. .-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688999999999999999999999999766 677789999999999999999999998753 223 34455556666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCC
Q 044169 600 CRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKS 679 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 679 (742)
-.++||.+++..+|+..+.-.|.-...|..++++-.+.|+.+.++.+|+++...++.+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~---------------------- 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI---------------------- 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh----------------------
Confidence 7899999999999999999999999999999999999999999999999999877632
Q ss_pred CCChHHHHHHHHHHHHHH
Q 044169 680 HSEMPKVYEKLKQLMQQI 697 (742)
Q Consensus 680 ~~~~~~~~~~~~~l~~~m 697 (742)
.++...|.++.+..+..
T Consensus 1668 -kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1668 -KKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred -hHhHHHHHHHHHHHHhc
Confidence 25666677766665553
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.2e-05 Score=77.57 Aligned_cols=235 Identities=17% Similarity=0.132 Sum_probs=147.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHH
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES------NVHVGSSLIEA 465 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~------~~~~~~~li~~ 465 (742)
+....-+..+++.|++.+....+.. -+..-++....++...|....+...-....+.|... =...+..+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444445555566666655555433 223333334444555555544444433333332110 01112224457
Q ss_pred HHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 544 (742)
|.+.++++.|...|.+...+-.. -....+....+++++..+...- +.|... -...-...+.+.|++..|+..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77888999999999875421111 1122333455666666555443 455542 233336678889999999999
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
|.++++. -+.|...|+...-+|.+.|.+..|++=.+... ..|+ ...|.--..++....+++.|.+.|++.++.+|+
T Consensus 381 YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 381 YTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999873 36677899999999999999999988766543 3444 444555555666777899999999999999999
Q ss_pred CchhHHHHHHHHHhc
Q 044169 623 DAAVYVTLSNMYAEA 637 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~ 637 (742)
+......+.+++...
T Consensus 459 ~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 459 NAEAIDGYRRCVEAQ 473 (539)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888887777654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=5.1e-06 Score=81.25 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=121.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-c---hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--AD-V---VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS---- 523 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 523 (742)
.....+..+...|.+.|++++|...|+++.. |+ . ..|..+..+|.+.|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455666777778888888888888887652 22 2 35667778888888888888888888774 44321
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 044169 524 TFLAVLSACSHS--------GLVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWR 594 (742)
Q Consensus 524 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 594 (742)
++..+..++... |++++|.+.++.+.+. .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444555543 6777888888877653 23322 22211111 1111100 00112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566889999999999999999987754 4789999999999999999999998887543
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=3.8e-06 Score=78.74 Aligned_cols=148 Identities=9% Similarity=0.083 Sum_probs=113.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (742)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3467778887776544432221 11 122235667777777777765 345677789999999999999
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 574 LEIALIFISNLP-IKP-TAPIWRPLFAA-CRCHSD--LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
+++|...|++.. ..| +...+..+..+ +...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998764 445 67778777776 467776 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 044169 649 LMKMKEI 655 (742)
Q Consensus 649 ~m~~~~~ 655 (742)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987554
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=2.4e-06 Score=74.12 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+....-.+...+...|++++|.++|+-.. ..| +..-|..|...|...|++++|+..|.++..++|+||.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34456667778889999999999998754 455 6778999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 044169 635 AEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE 698 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 698 (742)
...|+.+.|++.|+...... ..+|+..++.++.......+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999876422 145666677766666665554
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=5.1e-06 Score=73.63 Aligned_cols=94 Identities=15% Similarity=-0.034 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+..+...+...|++++|...|+... ..| +...|..+...+...|++++|...++++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3445566666666666666666543 233 56666666666777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
++++|.+.++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777776665433
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.53 E-value=0.00037 Score=73.00 Aligned_cols=193 Identities=9% Similarity=0.061 Sum_probs=97.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCc--hHHHHHHHHHH
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----ADV--VSWNSMIKAYS 498 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~ 498 (742)
.+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...+++... ++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445555666666666666665543 33345556666667777777777777666542 111 13445666677
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH-HHH-H--HHHHHHhccCcHHHHHHH--HHHhHHhcCC-CCcHHHHHHHHHHHhhc
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTN-STF-L--AVLSACSHSGLVQDGQKV--FESMVKEYGI-LPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~l~~~~~~~ 571 (742)
..|++++|..++++.......+.. ... . .++.-+...|..+.+.+. .......... ..........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 777777777777776532211111 111 1 222222333322222221 1111010000 01111222455667778
Q ss_pred CCHHHHHHHHHhCC--CCC---C----HHHHHHHH--HHHHHcCCHHHHHHHHHHHHhc
Q 044169 572 GKLEIALIFISNLP--IKP---T----APIWRPLF--AACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 572 g~~~~A~~~~~~~~--~~p---~----~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
|+.++|..+++.+. ... . ..+...++ -++...|+.+.|.+.+..++.+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888887776653 111 1 01112222 2356788888888888887764
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=5.8e-05 Score=71.10 Aligned_cols=339 Identities=14% Similarity=0.089 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHH-HHHHccC
Q 044169 156 ASLVNMYAKCGDIKSMVAVVKQMPYL---DIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTM-LAICGSL 231 (742)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~ 231 (742)
++.+..+.+..++.+|.+++..-.++ +....+.|..+|-...++..|-+.|+.+-.. .|...-|... .+.+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444445556666666665544332 3344555666666666677777776666543 3444333321 2333445
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHH--HHHhCCChHHHHHHHhccCC-CCcchHHHHHHHHHhCCCcchHHHHHH
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLT--MYIKCGMMEDAESVFEGLVQ-RNVISWTAIINGFKQHGDYEKPLRLVC 308 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 308 (742)
+.+..|.++...|... ++...-..-+. ..-..+++..+..+.++.+. .+..+.+...-...+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5566666666555421 11111111111 12345777777777777773 455555555555667788888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcC------C
Q 044169 309 LMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG------K 382 (742)
Q Consensus 309 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~ 382 (742)
...+-|---....|+..+ +..+.|+.+.|....++++++|+...+.... |..-+..+ .+.++ .
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~ 237 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQ 237 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHH
Confidence 776653333345666544 3445677788888888888777542221110 00000000 00000 0
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc-CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN-DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSS 461 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~ 461 (742)
..-+..+|.-...+.+.|+++.|.+.+-.|.-. ....|++|...+.-.- ..+++..+.+-+..+...+ +-...++..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 001223454555567778888888877777432 2345777776654322 2334555555555555553 345678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-----CchHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAA-----DVVSWNSMIKAYS-QNGRARKAIILFEKM 513 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~-~~g~~~~A~~~~~~m 513 (742)
++-.|||..-++-|.+++.+-... +...|+. +.++. ..-.+++|.+-++.+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHH
Confidence 888999999999998888765432 2233332 33332 234556665555443
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=2.8e-06 Score=75.25 Aligned_cols=123 Identities=10% Similarity=-0.024 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C
Q 044169 508 ILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I 586 (742)
Q Consensus 508 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 586 (742)
.++++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|+..|++.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45556555 35654 44566777888999999999888864 234466778888899999999999999998764 3
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 587 KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 587 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.| +...|..+..++...|++++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44 678888899999999999999999999999999999999888776543
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.3e-07 Score=58.36 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=27.7
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHccCC
Q 044169 147 AVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMP 179 (742)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 179 (742)
|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.44 E-value=0.00042 Score=82.56 Aligned_cols=324 Identities=10% Similarity=0.049 Sum_probs=182.0
Q ss_pred HHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC--C----CCCHH--HHHHHHHHH
Q 044169 262 MYIKCGMMEDAESVFEGLVQ----RNVISWTAIINGFKQHGDYEKPLRLVCLMREDG--I----DPNEY--TFTVALASC 329 (742)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~ 329 (742)
.....|+++.+...++.++. .+..........+...|+++++..++......- . .+... ....+-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777766632 223333334445556777788777777664321 0 11111 111222334
Q ss_pred hccCChhHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHhcC----C--CCC--hhhHHHHHHHHH
Q 044169 330 ASLRNSHMGYMFHAQVIKRGMALG----DFVGTAIVDMYSGLGEIWEAKKQLKEMG----K--SAS--SVSWNAQIAGFF 397 (742)
Q Consensus 330 ~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~--~~~--~~~~~~li~~~~ 397 (742)
...|+++.+...++...+.--..+ ....+.+...+...|++++|...+++.. . .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 566788888877777665311111 1233455566777888888877776651 0 111 223445566677
Q ss_pred hCCCcHHHHHHHHHHhH----cCCC--C-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--CCCC--chhHHHHHHHHH
Q 044169 398 RNQKTEEAIEAFSQMVR----NDAA--C-DEFTYSSILKACSLLPSLATCEQIHSRIVKS--KFES--NVHVGSSLIEAY 466 (742)
Q Consensus 398 ~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~~~--~~~~~~~li~~~ 466 (742)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+...... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 78888888887776544 2211 1 2233444455566678888888777765442 1111 233444566677
Q ss_pred HhcCCHHHHHHHHHhcC----CC-CchHHHH-----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHh
Q 044169 467 NKCGSWEDAERVFSQLT----AA-DVVSWNS-----MIKAYSQNGRARKAIILFEKMVVEGIRPTN---STFLAVLSACS 533 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~----~~-~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~ 533 (742)
...|+.++|.+.+++.. .. ....+.. .+..+...|+.+.|..++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78888888887776653 11 1111111 123445577888888877665432111111 11345556777
Q ss_pred ccCcHHHHHHHHHHhHHh---cCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 534 HSGLVQDGQKVFESMVKE---YGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
..|++++|...+++.... .+..++ ..+...+..++.+.|+.++|...+.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788888888888776542 233332 2356667778888888888888877653
No 113
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=9.5e-05 Score=74.59 Aligned_cols=211 Identities=11% Similarity=0.105 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCH--HHHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG-SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRA--RKAIIL 509 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~ 509 (742)
..++|......+++.+ +-+..+|+.-..++.+.| +++++...++++. ..+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444332 222233433333444444 4566666666554 23334555544444445542 566777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc---CCH----HHHHHHH
Q 044169 510 FEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA---GKL----EIALIFI 581 (742)
Q Consensus 510 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~ 581 (742)
++++.+. .|. ...|.....++...|+++++++.++++++. -.-+...|+....++.+. |+. ++++++.
T Consensus 131 ~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 131 TRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 7777763 443 356666666677777777777777777652 223444555554444443 222 4566666
Q ss_pred Hh-CCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------------
Q 044169 582 SN-LPIKP-TAPIWRPLFAACRCH----SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG----------------- 638 (742)
Q Consensus 582 ~~-~~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g----------------- 638 (742)
.+ +...| |...|+.+...+... +...+|...+.++++.+|+++.++..|+++|++..
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 44 33445 677888888888773 34567889999999999999999999999998743
Q ss_pred -CHHHHHHHHHHHH
Q 044169 639 -LQADAEEQRKLMK 651 (742)
Q Consensus 639 -~~~~A~~~~~~m~ 651 (742)
..++|.++++.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 2366777777773
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=1.2e-05 Score=84.97 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=142.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
+++|-...-..+.+.+...|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 456666677778888888899999998888754 677788888888888888888888777 3788888888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISN-LPIKP-TAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 608 (742)
......-+++|.++.+..... .-..+.....+.++++++.+.|+. +...| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888877888888888765331 112222333446788888888775 33444 46677777777778888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|.+.|...+.++|++...++++..+|.+.|+-.+|...+++..+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888888777655
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=5.8e-07 Score=56.51 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=25.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT 483 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 483 (742)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00016 Score=73.55 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=73.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a 609 (742)
+...|.+++|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++. ..|+ ...+.++..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4445666777777766654 333344444555567777777777777776654 4454 55566666667777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+..++.....+|+|+..|..|+.+|...|+..++.....++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777666666666665554443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=5.5e-05 Score=80.08 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=175.7
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 349 GMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 349 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+++|-...-..+...+.+.|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 356666777788999999999999999999986 788899999999999999999988777 378999999998
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHH
Q 044169 429 KACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARK 505 (742)
Q Consensus 429 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 505 (742)
+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-. .-...+|-.+..+..+.++++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8888888888888888765432 11112222234689999999998654 3345688888888899999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 506 AIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
|.+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+++..+ .. ..+...|...+-.....|.+++|++.+.++
T Consensus 538 av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 538 AVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999887 58887 5699999999999999999999999977 34 334445667777788999999999998876
Q ss_pred C
Q 044169 585 P 585 (742)
Q Consensus 585 ~ 585 (742)
.
T Consensus 614 l 614 (777)
T KOG1128|consen 614 L 614 (777)
T ss_pred H
Confidence 4
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=0.00017 Score=81.53 Aligned_cols=226 Identities=14% Similarity=0.087 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhC-C---CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCC-hhhHHHH
Q 044169 318 NEYTFTVALASCASLRNSHMGYMFHAQVIKRG-M---ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSAS-SVSWNAQ 392 (742)
Q Consensus 318 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l 392 (742)
+...|..-|.-....++.++|+.+.++.++.- + .--.-+|.++++.....|.-+...++|++.-.--| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666667777788888888887776532 1 11245788888888888988999999999832333 4568889
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCC
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFE-SNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~ 471 (742)
...|.+.+..++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.--. -......-.+.+-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999886 3456778999999999999999999999988875211 134556667777889999
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.+.+..+|+... +.....|+..|..-.++|+.+.+..+|++....++.|-. ..|...+..-.+.|+-+.++.+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999887 345678999999999999999999999999999888876 4566666655555654444333
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=3.5e-05 Score=71.89 Aligned_cols=125 Identities=17% Similarity=0.097 Sum_probs=65.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 044169 526 LAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCH 603 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 603 (742)
..+-.++...|+-+....+...... ....|......++....+.|++.+|+..|++.. .++|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3334444445555555444444321 223344444445555555555555555555542 334555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 604 SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|+++.|...|.+++++.|+++.+++.|+-.|.-.|++++|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555443
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.33 E-value=0.0026 Score=61.55 Aligned_cols=312 Identities=9% Similarity=0.023 Sum_probs=179.9
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHH---HHHHHhCCCcch
Q 044169 226 AICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAI---INGFKQHGDYEK 302 (742)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~ 302 (742)
..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-..|+.=|.++.+-.+.-+.+- ...+.++|.++.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 33344445555554444444321 11111112223345555555555555555443222222222 234667777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--
Q 044169 303 PLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-- 380 (742)
Q Consensus 303 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 380 (742)
|..=|+..++.. |+..+- ..+..+.--.++-.. ....+..+...|+...|++....+
T Consensus 125 A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 125 AEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 877777776652 322211 111111111111111 112333455667888888777766
Q ss_pred CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHH
Q 044169 381 GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGS 460 (742)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 460 (742)
-.+.|...+..-..+|...|++..|+.-++...+.. .-+..++--+-..+...|+.+.+....++..+. .||...+-
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf 260 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF 260 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH
Confidence 226677778888888999999998888777765543 223444445555666777777777776666653 45543221
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH---HHHHHHHHhcc
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--ST---FLAVLSACSHS 535 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t---~~~ll~a~~~~ 535 (742)
.. | ..+.+..+.++.| ......++|.++++..+...+. .|.. ++ +..+-.++...
T Consensus 261 ~~---Y---KklkKv~K~les~------------e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 261 PF---Y---KKLKKVVKSLESA------------EQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HH---H---HHHHHHHHHHHHH------------HHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeeccccc
Confidence 11 1 1222223332222 2345667888888888888774 4542 33 45555677888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 536 GLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 536 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
|++.+|++...++. .+.|| +.++.--.++|.-...+++|+.-|+...
T Consensus 321 ~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred CCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999886 45565 7888888999999999999999998765
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=8.4e-05 Score=69.44 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=108.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh
Q 044169 491 NSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR 570 (742)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 570 (742)
..+-..+...|+-+....+....... ..-|.......+......|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666677777776666664432 122223344466677777888888888877754 556777778888888888
Q ss_pred cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 044169 571 AGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
.|++++|..-|.+.. ..| ++...+.+...+.-.|+++.|+.++.......+.|+.+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888877776543 333 46667777777888888888888888888777778888888888888888888886654
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00066 Score=63.50 Aligned_cols=249 Identities=13% Similarity=0.037 Sum_probs=117.6
Q ss_pred HHhCCCHHHHHHHHHhcCCC-CChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHH-
Q 044169 364 YSGLGEIWEAKKQLKEMGKS-ASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCE- 441 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~- 441 (742)
|.-.|.+..+...-...... .++..-.-+-++|...|.+.....- +.. |-.|....+..+......-++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 34446666655554444212 3333334455666666655433221 111 11333344444433333344433322
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 044169 442 QIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 442 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
.+.+.+.......+......-...|++.|++++|.+.......-.. .-.=+..+.+..+.+-|.+.+++|.+ --+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~---ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA--AALNVQILLKMHRFDLAEKELKKMQQ---IDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHc---cch
Confidence 3334444443333333333334456777777777777766332222 22223344455666677777777765 223
Q ss_pred HHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 044169 522 NSTFLAVLSACSH----SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRP 595 (742)
Q Consensus 522 ~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 595 (742)
..|.+-|..++.+ .+.+.+|.-+|++|-. ..+|+..+.+..+.+....|++++|..++++.. ...++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3455545544432 3345666666666632 345555555555555555566666655555543 1223444444
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCCCC
Q 044169 596 LFAACRCHS-DLKMAEFISKQILELDPDD 623 (742)
Q Consensus 596 l~~~~~~~g-~~~~a~~~~~~~~~~~p~~ 623 (742)
++-.-...| +.+...+...++....|++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 444333333 2333444445555555543
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0075 Score=62.20 Aligned_cols=210 Identities=12% Similarity=0.118 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG---SWEDAERVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILF 510 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 510 (742)
+++..+++.....-...+..+|..+.+---..- ..+.....++++. ..-..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555444322333444444332211111 1344444444443 222346888888888888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---
Q 044169 511 EKMVVEGIRP-TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI--- 586 (742)
Q Consensus 511 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 586 (742)
.+..+.+..+ +....++++.-++. ++.+.|.++|+.=.+.+| -++......++-+.+.++-..|..+|++...
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 55677788876664 788999999998777544 4455567889999999999999999998752
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 587 KPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDD----AAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 587 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
.|| ...|..++..-..-||+..+.++-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 333 5789999999999999999999999887766622 123455666777777766555555544
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=0.00012 Score=68.62 Aligned_cols=154 Identities=8% Similarity=0.120 Sum_probs=112.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 542 (742)
+-.|...|+++.+..-.+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446777888777655443332221 01123566788888888877742 444567888888999999999999
Q ss_pred HHHHHhHHhcCCCCcHHHHHHHHHHH-hhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 543 KVFESMVKEYGILPEEAHYSCMVDLL-GRAGK--LEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQIL 617 (742)
Q Consensus 543 ~~~~~m~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 617 (742)
..|++..+ -.+.+...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998865 2234667788888864 67777 589999998864 445 67788888888999999999999999999
Q ss_pred hcCCCCchhH
Q 044169 618 ELDPDDAAVY 627 (742)
Q Consensus 618 ~~~p~~~~~~ 627 (742)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9987655443
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.26 E-value=0.0084 Score=61.85 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=120.5
Q ss_pred cHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 402 TEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES-NVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 402 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
.+...+.+++....-..--..+|...++...+..-+..|+.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555666665543222234567777888888888889999999998887776 78888888887764 78888999988
Q ss_pred hcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 044169 481 QLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFESMVKEYG-- 553 (742)
Q Consensus 481 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 553 (742)
.-. ..++.--...+.-+...++-..+..+|++.+..++.||. ..|..++.--+.-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 654 233444455677777888888999999999888777776 5688888888888998888888777754333
Q ss_pred CCCcHHHHHHHHHHHhhcCCHH
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
..+....-..+++.|.-.+...
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 2222233344555555555443
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=6.1e-05 Score=73.62 Aligned_cols=181 Identities=12% Similarity=0.019 Sum_probs=127.9
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-Cch---H
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN---VHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVV---S 489 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~---~ 489 (742)
.....+......+...|+++.|...++.+.+.. +.+ ...+..+..+|.+.|++++|...++++. .| +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677778888899999999999999988754 222 2466788899999999999999999886 23 222 4
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH
Q 044169 490 WNSMIKAYSQN--------GRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH 560 (742)
Q Consensus 490 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 560 (742)
+..+..++.+. |++++|.+.|+++.+. .|+.. .+..+..... .. ... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH-H--------HH
Confidence 55566666654 7899999999999874 56542 2222211100 00 000 0 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-I---KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
...+...|.+.|++++|+..+++.. . .| ....|..+..++.+.|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2356678889999999998888753 2 23 356788889999999999999998888877665
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.00011 Score=81.88 Aligned_cols=188 Identities=11% Similarity=0.066 Sum_probs=138.2
Q ss_pred HHHHHHHHhcCCCCHHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCchHHHHHHH
Q 044169 423 TYSSILKACSLLPSLATC-EQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT------AADVVSWNSMIK 495 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~~a-~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~ 495 (742)
....+=.+.+..|..+++ .+++.++.+ + ..+.+.+..+..-+-+.. ..++..+..|..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 94 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------V---LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVAR 94 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------H---HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 333344455666766554 455555543 2 233344333333332222 345778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
...+.|++++|..+++...+ +.||. .....+...+.+.+++++|....++... .-+-+......+..++...|++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999998 68887 4677788899999999999999999865 3334556778888999999999
Q ss_pred HHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 575 EIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
++|.++|++.. ..|+ ..+|.++..++...|+.++|...|+++++...+-...|..
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999875 3444 7889999999999999999999999999986544444443
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00038 Score=64.50 Aligned_cols=171 Identities=15% Similarity=0.179 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSM---IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
+|..++-+..-+|+.+.|...++.+...=+.++... ..-+-..|++++|+++++..++.. +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 444455555666777777777776652112111111 122345788999999999998864 4445677766666777
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---CCHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH---SDLKMA 609 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---g~~~~a 609 (742)
.|+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+... .+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7887788888888776 567899999999999999999999999999875 566 455555566554333 377889
Q ss_pred HHHHHHHHhcCCCCchhHHHHH
Q 044169 610 EFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
.+.|.++++++|.+...+..+.
T Consensus 211 rkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHH
Confidence 9999999999996665554443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00016 Score=80.48 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=138.4
Q ss_pred HHHHHHHHhCCCcHHHHH-HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 390 NAQIAGFFRNQKTEEAIE-AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
..+=.+...-|..++|-+ ++.+.. .++..........++.--.....+ ....+...+..|.....+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~ 98 (694)
T PRK15179 32 DLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEA 98 (694)
T ss_pred hHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHH
Confidence 333345666777777643 333332 233333333333333222222222 346678889999999999
Q ss_pred cCCHHHHHHHHHhcC--CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 044169 469 CGSWEDAERVFSQLT--AAD-VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.|.+++|+.+++... .|| ...+..++.++.+.+++++|+..+++.... .|+. .....+..++.+.|++++|..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999887 444 457888899999999999999999999984 7777 4566777789999999999999
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFA 598 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 598 (742)
|+++.. ..+-+...+..+..++...|+.++|...|++.. ..|....|+.++.
T Consensus 177 y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 177 FERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 999976 333446788999999999999999999999864 3444555555444
No 130
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=8.7e-05 Score=76.66 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=98.0
Q ss_pred HHHHHHHHH-HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 505 KAIILFEKM-VVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 505 ~A~~~~~~m-~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
+..++|-++ ...+..+|......|.-.|--.|.+++|+..|+.++. ++| |...|+.|.-.++...+.++|+.-|.
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 344444444 4445446666666666677788899999999988864 445 45578899999999999999999988
Q ss_pred hCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-----chhHHHHHHHHHhcCCHHHHH
Q 044169 583 NLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD-----D-----AAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 583 ~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~-----~~~~~~l~~~y~~~g~~~~A~ 644 (742)
+.. .+|. +.++..|.-+|...|.+++|...+-.++.+.+. + -.++.+|-.++.-.++.|-+.
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 764 6776 667778888899999999999998888887543 1 135666666666666655443
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=2.7e-05 Score=68.58 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.....++..+...|++++|.+.++... ..| +...|..+...+...|++++|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445667777788888888888887753 233 567777888888888899999999999988999888999999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044169 637 AGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 637 ~g~~~~A~~~~~~m~~~~ 654 (742)
.|++++|.+.++...+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999988877644
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.00069 Score=76.28 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=133.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCCh-hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHH
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASS-VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKA 430 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 430 (742)
+...+..|+..|...+++++|.++.+.. ...|+. ..|-.+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3456667777777777777777777654 223433 3333333355555554444433 22333
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAI 507 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 507 (742)
.....++..+..+...+.+. ..+...+..+..+|-+.|+.++|..+++++. ..|+...|.+...|... +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 33333444444444444443 2334466677777777777777777777766 34556777777777777 777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 044169 508 ILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIK 587 (742)
Q Consensus 508 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (742)
+++.+.... +....++..+.++|.++.. ..+-+...+-.+....... ....
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccc
Confidence 777776653 4444566666677766654 2222222222222211111 1112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
.-..++..+-..|...++++++..+++.+++.+|.|..+...++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 234445555566667777777777777777777777777777776665
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.00059 Score=69.51 Aligned_cols=145 Identities=13% Similarity=0.075 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTF-LAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMV 565 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 565 (742)
..+-...-.+...|++++|+..++.++.. .||...| ......+...++.++|.+.++.+.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 34444455566789999999999998875 6766554 4455678899999999999999864 4565 55666788
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++.+|+.++++.. .+.|+..|..|..+|...|+..++.. ..+..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHH
Confidence 99999999999999998864 44578999999999999998766655 455678889999999
Q ss_pred HHHHHHHHhCC
Q 044169 644 EEQRKLMKMKE 654 (742)
Q Consensus 644 ~~~~~~m~~~~ 654 (742)
........++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99998887654
No 134
>PLN02789 farnesyltranstransferase
Probab=98.13 E-value=0.00035 Score=70.49 Aligned_cols=187 Identities=9% Similarity=0.047 Sum_probs=136.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAA---DVVSWNSMIKAYSQNG-RARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSG 536 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 536 (742)
+-..+...++.++|..+..++... +..+|+.-...+...| ++++++..++++.+. .|+. .+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 333445567888899888887733 4446776666777777 689999999999985 4544 45665544555555
Q ss_pred c--HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc---CC----
Q 044169 537 L--VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCH---SD---- 605 (742)
Q Consensus 537 ~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~---- 605 (742)
. .+++..+++.+.+ .-+-+...|+...-++.+.|++++|++.++++. ...|..+|+.....+.+. |.
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 5 3677888888875 334567788888899999999999999999875 234677888877766554 22
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEA----GLQADAEEQRKLMKM 652 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~A~~~~~~m~~ 652 (742)
.+.......++++.+|+|..+|..+..++... ++..+|.+.+....+
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 35677888899999999999999999999883 455667777766544
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=7.2e-05 Score=76.87 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRC 602 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 602 (742)
...++..+...++++.|+++|+++.+. .|+ ....++..+...++-.+|++++.+.. ..| +...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 455566667777888888888888652 244 34457777777888888888887754 333 56667777777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.++++.|..+++++.+..|++..+|..|+.+|...|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998775
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=8.7e-06 Score=52.05 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCCh
Q 044169 184 ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNH 218 (742)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 218 (742)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998873
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0011 Score=61.65 Aligned_cols=163 Identities=13% Similarity=0.142 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV-LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
.|..++-+....|+.+.|...++++... + |...-...+ ..-+-..|.+++|+++++.+.++ -+.|..++-.=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3444566677889999999999999886 4 655332222 22345678999999999999874 35667777777777
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC---HHH
Q 044169 568 LGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL---QAD 642 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~---~~~ 642 (742)
.-..|+--+|++-+.+.. +..|...|.-+...|...|+++.|.-.+++++=..|-++..+..+++.+...|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 778888888887776653 557999999999999999999999999999999999999999999999888775 455
Q ss_pred HHHHHHHHHhCCC
Q 044169 643 AEEQRKLMKMKEI 655 (742)
Q Consensus 643 A~~~~~~m~~~~~ 655 (742)
|.+++.+..+-..
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 6777777665443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.98 E-value=0.0002 Score=62.98 Aligned_cols=113 Identities=8% Similarity=0.019 Sum_probs=85.3
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C
Q 044169 509 LFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I 586 (742)
Q Consensus 509 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 586 (742)
.+++... ..|+. .....+...+...|++++|.+.++.+.. ..+.+...+..+...|.+.|++++|...+++.. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 35544 4455666777888889999988888865 234466778888888888999999998888753 3
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 587 KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 587 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.| +...+..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677777888889999999999999999999997655
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.4e-05 Score=51.02 Aligned_cols=35 Identities=34% Similarity=0.698 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999873
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00031 Score=72.31 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG 536 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 536 (742)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .+-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344556677777889999999999998777777777888888889999999999998874 2334455665666788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044169 537 LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI 586 (742)
Q Consensus 537 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (742)
+++.|.++.+++.+ -.+-+..+|..|+.+|...|++++|+..++.++.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999875 3334456899999999999999999999999873
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0033 Score=59.01 Aligned_cols=177 Identities=10% Similarity=0.109 Sum_probs=119.3
Q ss_pred CCCcHHHHH-HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044169 399 NQKTEEAIE-AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAER 477 (742)
Q Consensus 399 ~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 477 (742)
-++.++-+. +.+.+.......+......-...|...+++++|.+..... -+......=+..+.|..+++-|++
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333 3344444433444344444455678888888888776642 122223333555678888999999
Q ss_pred HHHhcCCCCc-hHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 044169 478 VFSQLTAADV-VSWNSMIKAYSQ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552 (742)
Q Consensus 478 ~~~~~~~~~~-~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 552 (742)
.+++|.+.|- .+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~-- 235 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD-- 235 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 9999986544 466667777664 34688999999999875 789999999999999999999999999999876
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHH-HHHHhC
Q 044169 553 GILPEEAHYSCMVDLLGRAGKLEIAL-IFISNL 584 (742)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 584 (742)
....++.+...++-+-...|...++. +.+.+.
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 34456677777776666666654443 444444
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.91 E-value=0.062 Score=59.18 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCCCHHH---HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHH
Q 044169 424 YSSILKACSLLPSLAT---CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNSMIKA 496 (742)
Q Consensus 424 ~~~ll~~~~~~g~~~~---a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~ 496 (742)
.+.++..+-+.++... |+-+++...... +.+..+--.+|..|+-.|-+..|.++|..+. +.|...|- +..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 3456666777776652 333333333322 3444555567888888888888888888776 23333332 2234
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHH---HHHhHHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKV---FESMVKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~---~~~m~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
+...|++..+...++..... +..+. .+-..+..||. .|.+.+..++ -+++.. .....-..+-+..++.++..+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 44566777666666655442 11111 22223333433 3444443332 223321 111122334566778888889
Q ss_pred CHHHHHHHHHhCC
Q 044169 573 KLEIALIFISNLP 585 (742)
Q Consensus 573 ~~~~A~~~~~~~~ 585 (742)
+.++-...+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 9888888888776
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=1.9e-05 Score=50.01 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCC
Q 044169 184 ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQP 216 (742)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 216 (742)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=3.2e-05 Score=49.00 Aligned_cols=33 Identities=27% Similarity=0.682 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP 520 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 520 (742)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00065 Score=60.43 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=58.4
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTA----PIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 608 (742)
.++...+...++.+.++++-.+ .....-.+...+...|++++|...|+... ..||. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555544322111 01122234455555566666665555543 11222 123334445556666666
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
|...++.. .-.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 12222455667777777777777777777764
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.84 E-value=0.081 Score=58.33 Aligned_cols=509 Identities=12% Similarity=0.066 Sum_probs=243.0
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhc--cccchHHHHHHHHHHHHhccCCChhHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCS--REECLELGRRYHALITKTAVCGDQFVTAS 157 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (742)
...+++..|+....++++..+ + ..|..++.++. +.|..++|..+++.....+.. |..+...
T Consensus 20 ld~~qfkkal~~~~kllkk~P---------------n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~ 82 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP---------------N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQF 82 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC---------------C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHH
Confidence 566778888888888776543 2 23555566543 667788888777766655533 7778888
Q ss_pred HHHHHHhcCChhHHHHHHccCCC--CCcccHHHHHHHHHhCCCh----HHHHHHHHHchhCCCCCChhhHHHHHHHHccC
Q 044169 158 LVNMYAKCGDIKSMVAVVKQMPY--LDIASCNCLLAGYAKNALF----DQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL 231 (742)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 231 (742)
+-..|.+.|+.++|..++++... |+..-...+..+|++.+++ ..|+++++.. +-+.+.|=++++...+.
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcccchHHHHHHHHHHh
Confidence 88888888888888888888765 3333334445566665554 4455555533 22344443444433321
Q ss_pred C----------ChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCChHHHHHHHhc-c----CCCCcchHHHHHHHHH
Q 044169 232 S----------AIDEGKQLHAQTMKLQ-YLSKTAVSNALLTMYIKCGMMEDAESVFEG-L----VQRNVISWTAIINGFK 295 (742)
Q Consensus 232 ~----------~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~ 295 (742)
. -+.-|....+.+.+.+ ...+..-...-...+...|++++|.+++.. . ..-+...-+--+..+.
T Consensus 158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 1123444445544443 111111112223334456777777777722 1 2223444445566677
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKK 375 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 375 (742)
..++|.+..++-.++...| +|. |...+.. +++.+.....+| ... .+...+.++...+
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~s------------v~klLe~~~~~~-a~~------~~s~~~~l~~~~e 294 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKG--NDD--YKIYTDS------------VFKLLELLNKEP-AEA------AHSLSKSLDECIE 294 (932)
T ss_pred HhcChHHHHHHHHHHHHhC--Ccc--hHHHHHH------------HHHHHHhccccc-chh------hhhhhhhHHHHHH
Confidence 7777777777777776664 232 2221111 111111110000 000 1111222222222
Q ss_pred HHHhc-CCCCChhhHHHHHHHH---HhCCCcHHHHHHHHHHhHcCCCC----C---------hHHHHHHHHHhcCCC-CH
Q 044169 376 QLKEM-GKSASSVSWNAQIAGF---FRNQKTEEAIEAFSQMVRNDAAC----D---------EFTYSSILKACSLLP-SL 437 (742)
Q Consensus 376 ~~~~~-~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p----~---------~~t~~~ll~~~~~~g-~~ 437 (742)
..++. + ...-..|-+-+..+ -.-|+.++++-.|-+-. |-+| | ..-...+++.+.... +.
T Consensus 295 k~~~~i~-~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~ 371 (932)
T KOG2053|consen 295 KAQKNIG-SKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDS 371 (932)
T ss_pred HHHHhhc-ccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcc
Confidence 22222 1 11111122222222 23355555443332211 1111 1 111122222222111 11
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-----HHHHHHHHh----cCC---------C------Cc---hHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSW-----EDAERVFSQ----LTA---------A------DV---VSW 490 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~----~~~---------~------~~---~~~ 490 (742)
....++... +.+.+..-.-.|.+ +.-..++.+ ... | +. .+-
T Consensus 372 s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 372 SGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred hhhHHHHHH------------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 111111110 11111111111211 111111111 110 1 11 245
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 491 NSMIKAYSQNGRAR---KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 491 ~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+.|+..+.+.++.. +|+-+++.-... -+-|..+-..+++.|+-.|-...|.++|+.+-- ..+..|...|- +...
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HHHH
Confidence 67888888888766 445555554442 123345667778889888999999999988732 35555544332 3355
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHH
Q 044169 568 LGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD----DAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~ 641 (742)
+...|++..+...+.... ...+..----++.-..++|.+....++..---.+.-. -..+-....+..+..++.+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~ 596 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGT 596 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 566777777766665432 1111111112333344667666665554433333211 1233455677778888888
Q ss_pred HHHHHHHHHH
Q 044169 642 DAEEQRKLMK 651 (742)
Q Consensus 642 ~A~~~~~~m~ 651 (742)
+-...+..|.
T Consensus 597 q~~~~~~~~~ 606 (932)
T KOG2053|consen 597 QLLKLLESMK 606 (932)
T ss_pred HHHHHHhccc
Confidence 8888888776
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.83 E-value=0.0072 Score=68.40 Aligned_cols=148 Identities=16% Similarity=0.262 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 044169 320 YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRN 399 (742)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 399 (742)
..+..+..+|.+.|+.+++..+++.+++.. +.++.+.|.+...|... ++++|.+++.+. +..|...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------------V~~~i~~ 182 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA------------IYRFIKK 182 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH------------HHHHHhh
Confidence 345555556666666666666666666655 45666677777777777 777777666554 2235566
Q ss_pred CCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 400 QKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS-KFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 400 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
+++.++.+++.++.... |+...+ -.++.+.+... |..--+.++-.+-..|-+.++++++..+
T Consensus 183 kq~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred hcchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 67777777777776642 222211 11122222221 2223334445555666666666677766
Q ss_pred HHhcC---CCCchHHHHHHHHHH
Q 044169 479 FSQLT---AADVVSWNSMIKAYS 498 (742)
Q Consensus 479 ~~~~~---~~~~~~~~~li~~~~ 498 (742)
|+.+. +.|.....-++.+|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 66665 233444555555554
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00022 Score=57.78 Aligned_cols=93 Identities=25% Similarity=0.226 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+..++..+...|++++|.+.+++.. ..| +...+..+...+...++++.|.+.++.+++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456677778888888888887753 333 44667777777888899999999999999999888888999999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 044169 639 LQADAEEQRKLMKMK 653 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~ 653 (742)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877643
No 149
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.05 Score=54.94 Aligned_cols=125 Identities=15% Similarity=0.189 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGL 537 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 537 (742)
+.+..+.-+...|+...|.++..+..-|+..-|-..+.+|+..++|++-.++... +-.++-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455566778888888888888888888888889999999998876665432 1233668888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044169 538 VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC 602 (742)
Q Consensus 538 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (742)
.++|..+...+ + +..-+.+|.++|++.+|.+.-.+.. |...+..+...|..
T Consensus 253 ~~eA~~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 253 KKEASKYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHHHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCC
Confidence 88888887653 1 2446778888888888887755533 55555444444433
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.80 E-value=7e-05 Score=56.77 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG-LQADAEEQRKLMKM 652 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~ 652 (742)
++.+|..+...+...|++++|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999988765
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.00056 Score=58.40 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 044169 562 SCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNM 633 (742)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 633 (742)
..++..+.+.|++++|.+.|+++. ..|+ ...+..+...+.+.|+++.|...++.++...|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444445555555555554432 1121 2233444445555555555555555555555542 3345555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 044169 634 YAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~ 653 (742)
|.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55566666666555555544
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00049 Score=65.77 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=73.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a 609 (742)
..+.+++++|+..|.+.++ -.+.|...|..-..+|.+.|.++.|++=.+... +.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456677777777777764 233455556666777777777777776666543 4443 66778888888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 641 (742)
++.|+++++++|++......|-.+-.+.+.-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888887766666666555544443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.00085 Score=57.30 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=64.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFA 598 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 598 (742)
+..+...+...|++++|.+.|..+.+...-.+ ....+..+..++.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666654321111 12344456666777777777777766543 2222 445666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
++...|+.+.|...++++++..|+++.+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 7788888888888888888888876654443
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=5.2e-05 Score=60.11 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 044169 572 GKLEIALIFISNLP-IKP---TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 572 g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
|++++|+.+++++. ..| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555555442 112 333444455666666666666666666 5555656666667788888888888888777
Q ss_pred HH
Q 044169 648 KL 649 (742)
Q Consensus 648 ~~ 649 (742)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0027 Score=56.43 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHH
Q 044169 491 NSMIKAYSQNGRARKAIILFEKMVVEGIRPTN---STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMV 565 (742)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~ 565 (742)
..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|+. ...-.|.
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3344444 3666777777777776642 2221 22333445666777777777777777653 211211 1233456
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQI 616 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 616 (742)
.++...|++++|+..++.....+ ....+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777777777777776654222 3444555666677777777777777765
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.00041 Score=71.83 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=86.8
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|++.|+++++ .-+.+...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4566778999999999999976 233456678888899999999999999998864 445 577788888889999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 044169 607 KMAEFISKQILELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 637 (742)
++|+..++++++++|+++.....+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999888777776654444
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00022 Score=53.26 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=49.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44567788999999999999999999999999999999999999999999998886543
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=7.8e-05 Score=45.95 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHchhCCC
Q 044169 184 ASCNCLLAGYAKNALFDQAFSFFLKLDGIDV 214 (742)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 214 (742)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877663
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00025 Score=67.68 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=77.6
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
+-+.+.+++++|+..|.+.. ..| |++.|..-..+|.+.|.++.|++-++.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 44567899999999998854 555 6777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 044169 644 EEQRKLMKMK 653 (742)
Q Consensus 644 ~~~~~~m~~~ 653 (742)
.+.|++..+-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999776543
No 160
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.57 E-value=0.12 Score=52.59 Aligned_cols=446 Identities=10% Similarity=0.054 Sum_probs=231.8
Q ss_pred ccccchHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCChhHHHHHHccCCCC-CcccHHHHHHHH--HhCCC
Q 044169 128 SREECLELGRRYHALITKTAVCGD------QFVTASLVNMYAKCGDIKSMVAVVKQMPYL-DIASCNCLLAGY--AKNAL 198 (742)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~ 198 (742)
.+.++..++..+|..+.+.. ..+ ....+.++++|.- ++++.....+.+..+. ....|-.+..++ -+.++
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 35678888888888887663 223 2345667777765 3444444444443321 234466666553 46778
Q ss_pred hHHHHHHHHHchhC--CCCC---C--------hhhH-HHHHHHHccCCChHHHHHHHHHHHHhCC----CCChhHHHHHH
Q 044169 199 FDQAFSFFLKLDGI--DVQP---N--------HYTY-STMLAICGSLSAIDEGKQLHAQTMKLQY----LSKTAVSNALL 260 (742)
Q Consensus 199 ~~~A~~~~~~m~~~--~~~p---~--------~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li 260 (742)
+.+|++.+..-.+. +-.| | ...+ +..+.++...|++.+++.+++++...=+ .-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888776654 2221 1 1111 2334556677777777777777665433 35666777766
Q ss_pred HHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CChhHH
Q 044169 261 TMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASL--RNSHMG 338 (742)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a 338 (742)
-+++++=-++-- +.+...=..-|--++-.|.+.=+ .++.-.=..+.|....+..++.-..-. .+..--
T Consensus 175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 666553221111 11111111123444444432211 111100012344444444444433322 122223
Q ss_pred HHHHHHHHHhCCCCch-HHHHHHHHHHHhCCCHHHHHHHHHhcCC-------CCChhhHHHHHHHHHhCCCcHHHHHHHH
Q 044169 339 YMFHAQVIKRGMALGD-FVGTAIVDMYSGLGEIWEAKKQLKEMGK-------SASSVSWNAQIAGFFRNQKTEEAIEAFS 410 (742)
Q Consensus 339 ~~i~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 410 (742)
.+++....+.-+.|+. -+...|+..+.+ +.+++..+-+.+.. ..-..++..++....+.++..+|-+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444455543 334445555544 33444433333310 2224567888888888999998888887
Q ss_pred HHhHcCCCCChHHHH-------HHHHHhc-CCCCHH---HHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-HHHH
Q 044169 411 QMVRNDAACDEFTYS-------SILKACS-LLPSLA---TCEQIHSRIVKSKFESNVHVGSSLI---EAYNKCGS-WEDA 475 (742)
Q Consensus 411 ~m~~~g~~p~~~t~~-------~ll~~~~-~~g~~~---~a~~i~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A 475 (742)
-+.-. .|+...-. .+-+..+ .-.+.. .-..++..+....+.. .....-|+ .-+-+.|. -++|
T Consensus 323 lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 323 LLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHH
Confidence 66543 33322111 1111222 111222 2223344443332211 11222222 22444555 7888
Q ss_pred HHHHHhcC---CCCchHHHHHH----HHHHHc---CCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHH--HhccCcHH
Q 044169 476 ERVFSQLT---AADVVSWNSMI----KAYSQN---GRARKAIILFEKMVVEGIRPTNST----FLAVLSA--CSHSGLVQ 539 (742)
Q Consensus 476 ~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a--~~~~g~~~ 539 (742)
.++++.+. .-|...-|.+. .+|.+. ..+.+-+.+-+-..+.|+.|-.+. -+.+.+| +...|++.
T Consensus 400 lnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 400 LNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 88888776 34554444332 233322 234444555555567788775543 3333333 45678888
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 595 (742)
++.-.-.-+. .+.|++.+|.-+.-++....++++|.+++..++ |+...+++
T Consensus 480 kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 480 KCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 8876655553 577999999999999999999999999999886 46555554
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=97.55 E-value=0.002 Score=56.49 Aligned_cols=90 Identities=16% Similarity=0.008 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 563 CMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
....-+...|++++|..+|+-+- ..-+..-|..|...|...++++.|...|..+..++++||.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44455668899999999998653 2336777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 044169 641 ADAEEQRKLMKM 652 (742)
Q Consensus 641 ~~A~~~~~~m~~ 652 (742)
++|++.|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00012 Score=45.05 Aligned_cols=31 Identities=35% Similarity=0.684 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGI 518 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 518 (742)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0035 Score=62.57 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA-CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998542 2333445444444 33356777799999999885 4567778899999
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 567 LLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999864 2233 35899999999999999999999999999988643
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.0019 Score=66.94 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=81.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
....+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++.+++. -+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345667889999999999999985 555 467888888999999999999999999762 234566788899999999
Q ss_pred CCHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 044169 572 GKLEIALIFISNLP-IKPTAPIWRPLFAA 599 (742)
Q Consensus 572 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 599 (742)
|++++|+..|++.. ..|+.......+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999998864 56655544444433
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.48 E-value=0.0015 Score=60.06 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
.+..+...+...|++++|...|++.. ..|+ ...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666667777777777777776643 1222 356777788888899999999999999999998888888899998
Q ss_pred HhcCC
Q 044169 635 AEAGL 639 (742)
Q Consensus 635 ~~~g~ 639 (742)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88777
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0043 Score=67.15 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=74.6
Q ss_pred CCCchHHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc
Q 044169 484 AADVVSWNSMIKAYSQ--NG---RARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE 557 (742)
Q Consensus 484 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 557 (742)
..|...|...+.+... .+ +.++|..+|++..+ ..|+. ..+..+..++... .+..|.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~ 395 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPL 395 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCc
Confidence 4566777777776443 22 36688899999888 47776 3344333322111 011110
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISN---L-PIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
.. ++++.+.+..++ + ....++..+..+.......|++++|...++++++++| +...|..++.+
T Consensus 396 ~~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 DE------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred cH------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 00 111122222221 1 1122344555554445556666666666666666666 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 044169 634 YAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|...|+.++|.+.+++.....
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 666666666666666655443
No 167
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0019 Score=62.19 Aligned_cols=106 Identities=18% Similarity=0.096 Sum_probs=87.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHhcCCCCchhHH
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRC-HS--DLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~-~g--~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
-+-|...|--|..+|.+.|++..|..-|.+.. ..+++..+..+..++.. .| +..++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35577889999999999999999999988754 34467777777776432 22 567899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 044169 629 TLSNMYAEAGLQADAEEQRKLMKMKEISKEP 659 (742)
Q Consensus 629 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 659 (742)
.|+..+...|++.+|...|+.|.+.....+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987764444
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.018 Score=51.00 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=114.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
.+.=+++...+-..+-.+ ..|+...-..+..+....|++.+|...|++... .-+--|....-.+..+....++..+|
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHH
Confidence 333344444333333332 578887777888999999999999999999865 23455777888899999999999999
Q ss_pred HHHHHhCC-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 578 LIFISNLP-IKPT---APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 578 ~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
...++++. .+|+ +.....+...+...|..+.|+..++.++.-.| ++..-...+..+.++|+.+++..-+..+.+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99988753 2222 33445667779999999999999999999999 788888888999999999888776555543
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.0045 Score=56.88 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT--NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34567777778888888888888888876432222 245777777788888888888888877652 22234556666
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 565 VDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
..+|...|+...+..-++... ..+++|.+.++++++.+|++ |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777776655554332211 12568888999999998865 5555555554443
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0018 Score=59.36 Aligned_cols=93 Identities=15% Similarity=-0.054 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
...|..++..+...|++++|+..|++.. ..|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4456667777888888888888887753 2222 3478888888999999999999999999999988888888888
Q ss_pred HHH-------hcCCHHHHHHHHHHH
Q 044169 633 MYA-------EAGLQADAEEQRKLM 650 (742)
Q Consensus 633 ~y~-------~~g~~~~A~~~~~~m 650 (742)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666544
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.002 Score=51.95 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 568 (742)
|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.+.++...+ ..+.+...+..++.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHH
Confidence 344455555556666666666655543 222 23444444455555555555555555433 1112223334444444
Q ss_pred hhcCCHHHHHHHHH
Q 044169 569 GRAGKLEIALIFIS 582 (742)
Q Consensus 569 ~~~g~~~~A~~~~~ 582 (742)
...|++++|.+.+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444443
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.35 E-value=0.00076 Score=51.71 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=52.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...+.+.++++.|.++++++++++|+++..+..++.+|.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998886553
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.00047 Score=52.00 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=45.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+.|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888999999999999999999999999999999999999999887776543
No 174
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.38 Score=52.24 Aligned_cols=342 Identities=13% Similarity=0.068 Sum_probs=184.0
Q ss_pred chhCCCCCChhhHHH-----HHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---hHHHHHHHhccC
Q 044169 209 LDGIDVQPNHYTYST-----MLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM---MEDAESVFEGLV 280 (742)
Q Consensus 209 m~~~~~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 280 (742)
+..-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+=+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 345677777766654 4666677788888888877654222122 5667777777776632 223334444444
Q ss_pred C--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 044169 281 Q--RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGI----DPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGD 354 (742)
Q Consensus 281 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 354 (742)
. ...++|..+.+--...|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...++.-++...-..
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~--- 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR--- 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---
Confidence 4 4677898888888889999988888764222211 112233455566677777777777666655543110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHh------HcCCCCChHHHHHHH
Q 044169 355 FVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMV------RNDAACDEFTYSSIL 428 (742)
Q Consensus 355 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g~~p~~~t~~~ll 428 (742)
. +......+...|..++...-...|..+ +..+-+.++-.+++..|..=. ..|..|+ .....
T Consensus 579 s------~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 579 S------SLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred H------HHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 0 000111122223333333210111000 111112222222222221100 0122222 22333
Q ss_pred HHhcCCCCHHHHHH----------HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHH
Q 044169 429 KACSLLPSLATCEQ----------IHSRIV-KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAY 497 (742)
Q Consensus 429 ~~~~~~g~~~~a~~----------i~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 497 (742)
.+|++.....-..+ +...+. +.|......+.+--+.-+...|+..+|.++-.+..-||-..|--=+.++
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTAL 725 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 44444433211111 111111 1232333333444455566778888888888888888888887778888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
+..+++++-+++-+.+. + +.-|.-...+|.+.|+.++|.+++-+.. |.. -.+.+|.+.|++.+|
T Consensus 726 a~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHH
Confidence 88888887666655433 1 3446667788888888888888876551 211 466788888888888
Q ss_pred HHHHHh
Q 044169 578 LIFISN 583 (742)
Q Consensus 578 ~~~~~~ 583 (742)
.++--+
T Consensus 790 ad~A~~ 795 (829)
T KOG2280|consen 790 ADLAAE 795 (829)
T ss_pred HHHHHH
Confidence 776433
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.28 E-value=0.00023 Score=44.63 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 044169 613 SKQILELDPDDAAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 644 (742)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.27 E-value=0.00063 Score=50.72 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=47.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567778888888888888764 345 567788888888999999999999999999999764
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.085 Score=51.26 Aligned_cols=169 Identities=17% Similarity=0.162 Sum_probs=104.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCc-hH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHh
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTA--ADV-VS---WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACS 533 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 533 (742)
....+.+.|++++|.+.|+++.. |+. .. .-.++.+|.+.+++++|...+++..+. .|+. .-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888762 222 12 234566778888999999999888874 4443 23333333322
Q ss_pred c--cC---------------c---HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH-
Q 044169 534 H--SG---------------L---VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI- 592 (742)
Q Consensus 534 ~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~- 592 (742)
. .+ + ..+|.+.|+.+++.+ |+ ..-..+|...+..+. +...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH---HHHHH
Confidence 1 10 1 233444555554432 22 233344544443332 1111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 593 -WRPLFAACRCHSDLKMAEFISKQILELDPD---DAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 593 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
-......|.+.|.+.-|..-++.+++..|+ ...+...+..+|.+.|..++|.++.+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113344588899999999999999998886 44567788899999999999998876653
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.017 Score=52.88 Aligned_cols=80 Identities=8% Similarity=-0.002 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT--NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++...+. .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3556666667777788888887777765422221 235666677777777777777777776542 122233444555
Q ss_pred HHHh
Q 044169 566 DLLG 569 (742)
Q Consensus 566 ~~~~ 569 (742)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.20 E-value=0.0013 Score=52.04 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHH
Q 044169 500 NGRARKAIILFEKMVVEGIR-PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 500 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (742)
.|+++.|+.+++++.+..-. |+...+..+..++.+.|++++|.++++. .+ ..| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46777777777777764211 1233444466677777777777777766 21 112 223333446667777777777
Q ss_pred HHHHHh
Q 044169 578 LIFISN 583 (742)
Q Consensus 578 ~~~~~~ 583 (742)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.32 Score=49.19 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 436 (742)
.+..|.-+...|+...|.++-.+.. -|+-.-|-..+.+|+..+++++-..+... +-.+..|..++.+|...|+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566677788888888888887 68888888888999999888877665432 2245778888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
..+|..+...+ + +..-+.+|.++|++.+|.+.-.
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 88877776651 1 1445677888888888876543
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.0034 Score=62.30 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=83.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----C-C--CCHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESM---VKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-----I-K--PTAP 591 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~-~--p~~~ 591 (742)
.|..|.+.|.-.|+++.|+...+.- .+.+|-+. ....++.+..++.-.|+++.|.+.++... . . ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678888888776542 23344332 23467778888888888888888876532 1 1 1233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILEL----D--PDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+.-+|...|.-..+++.|+..+.+-+.+ + .....++.+|+++|...|..++|..+...-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4556677777777788888777765443 1 225667888899999889888887765544
No 182
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.014 Score=58.30 Aligned_cols=154 Identities=12% Similarity=0.018 Sum_probs=100.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCcHHH------------
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS--ACSHSGLVQDGQKVFESMVKEYGILPEEAH------------ 560 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------ 560 (742)
.++...|++++|...--..++. .++. .+...++ ++...++.+.|...|++.++ ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 3455677777777766655542 2222 1222222 34456677777777776643 3344322
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 561 -YSCMVDLLGRAGKLEIALIFISNLP-IKP-----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 561 -~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
+..=.+-..+.|++.+|.+.+.+.. +.| +.-.|........+.|+.++|+.-.+.+++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1122234567888888888887753 333 344555555567788888899999999999888778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 044169 634 YAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 888899999988888776544
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.13 E-value=0.015 Score=50.84 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSH 534 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 534 (742)
.-.+...+...|++++|.++|+-+. ..+..-|-.|..++...|++++|+..|...... .|| +..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 3344555667888888888888765 345567888888888888888888888888874 444 4677777888888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC
Q 044169 535 SGLVQDGQKVFESMVKEYGILP 556 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p 556 (742)
.|+.+.|.+.|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 8888888888888776444333
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.57 Score=50.31 Aligned_cols=286 Identities=16% Similarity=0.158 Sum_probs=135.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-----CcchHHHHHHHHHhCCCcchHHHH
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR-----NVISWTAIINGFKQHGDYEKPLRL 306 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 306 (742)
|++++|++++-++-+.. .-+.++.+.|++-...++++.-... -...|+.+...++....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554443332 2244455555555555555432211 123456666666555556666555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCh
Q 044169 307 VCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASS 386 (742)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (742)
|..-... ...+.++.+...+++-+.+ ...++-+....-.+.+++.+.|.-++|.+.|-+-+ .|.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk- 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK- 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-
Confidence 5442110 0122222222222222111 12234455566667788888888888887777665 332
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 466 (742)
+.+..|...+++.+|.++-++.. -|...|. +.- .|-+++.. .+ + ---|..+
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~----l~qv~tl---iak--------~aaqll~~---~~------~-~eaIe~~ 933 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IAK--------QAAQLLAD---AN------H-MEAIEKD 933 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HHH--------HHHHHHhh---cc------h-HHHHHHh
Confidence 34556667777777777766543 2222222 110 11111111 00 0 1135567
Q ss_pred HhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044169 467 NKCGSWEDAERVFSQLTAAD---VVSWNSMIKAYS----QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 539 (742)
.+.|+.-+|.+++.+|.+.. -+.|..+-..|. -..++.++++-.++....|...+... +...|-..
T Consensus 934 Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~ 1006 (1189)
T KOG2041|consen 934 RKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLA 1006 (1189)
T ss_pred hhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhh
Confidence 77788777888877775221 111222211111 12234445555555555554433321 12223333
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
++-++.+..-+ | ....++-.|..--...|..+.|+..--
T Consensus 1007 ~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 1007 EQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred hHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 33333332211 1 233455556666677888888876543
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.07 E-value=0.39 Score=48.00 Aligned_cols=276 Identities=14% Similarity=0.118 Sum_probs=175.8
Q ss_pred CCCHHHHHHHHHhcC--CCCChhhHHHHHHH--HHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 367 LGEIWEAKKQLKEMG--KSASSVSWNAQIAG--FFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 367 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
.|+-..|.+.-.+.. +..|....-.++.+ -.-.|+++.|.+-|+.|...- .--......|.-...+.|..+.|.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHH
Confidence 355555555544431 12333333333322 234688888888888886520 1111223334444457788888887
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCch--HHHHHHHHHH---HcCCHHHHHHHHHH
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVV--SWNSMIKAYS---QNGRARKAIILFEK 512 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~ 512 (742)
.-+..-..- +.-.-...+++...+..|+++.|+++++.-. .+++. .--.|+.+-. -..+...|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 777665542 2224566778888899999999999987654 44443 2223333222 13356667776666
Q ss_pred HHHcCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH----HHHHhCCCC
Q 044169 513 MVVEGIRPTNST-FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIAL----IFISNLPIK 587 (742)
Q Consensus 513 m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~ 587 (742)
..+ +.||... -..-..++.+.|+..++-.+++.+- ...|.+..+.. ..+.|.|+..... +-+..|. +
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk-~ 326 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDTALDRLKRAKKLESLK-P 326 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC-c
Confidence 665 6788743 4444578999999999999999884 45666665433 3345566532221 1133333 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEA-GLQADAEEQRKLMKMK 653 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 653 (742)
.+..+......+....|++..|..-.+.+....| -...|..|+++-... |+-.++...+.+..+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4577777788888899999999999999999999 677899999987665 9999999888766543
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.016 Score=51.24 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=94.3
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP---IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD- 622 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~- 622 (742)
+..++...-|+...--.|..++.+.|+..||...|++.. ...|......+..+....++...|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 333444566888888889999999999999999999864 5568888889999999999999999999999999875
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 623 -DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 623 -~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
.|.....++..|...|++.+|+..|+...+.-..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 6778889999999999999999999988765543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.001 Score=50.08 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=25.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
..|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666655442 22244444455555555555555555555543
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0018 Score=48.94 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHS-DLKMAEFISKQILELDP 621 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 621 (742)
+...|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34567777788888888888888887653 344 5677888888888888 68999999999998887
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.0097 Score=59.39 Aligned_cols=129 Identities=9% Similarity=0.060 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh-cCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR-AGKLEIALIFISNLP--IKPTAPIWRPLFAA 599 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 599 (742)
.+|..++..+.+.+..+.|..+|.+..+. -..+..+|...+.+-.+ .++.+.|.++|+... ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999753 22344556666666444 566777999999864 55678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 600 CRCHSDLKMAEFISKQILELDPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+...|+.+.+..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876544 58999999999999999999999888753
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.00 E-value=0.022 Score=48.01 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHH
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLL 568 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 568 (742)
.+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..++++....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556777889999999999999998876654 4577778889999999999999998876432111 222333345678
Q ss_pred hhcCCHHHHHHHHHhC
Q 044169 569 GRAGKLEIALIFISNL 584 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~ 584 (742)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8889999998887553
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.98 E-value=0.013 Score=60.90 Aligned_cols=119 Identities=8% Similarity=0.063 Sum_probs=88.3
Q ss_pred cCCChhHHHHHHHHHHhcCChhHHHHHHccCCC-C-----CcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhH
Q 044169 148 VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY-L-----DIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTY 221 (742)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 221 (742)
.+.+......+++......+++++..++-+... + -..+..++|+.|.+.|..+.++++++.=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 345555666677777777777778777766542 1 1234568888888888888888888888888888888888
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 044169 222 STMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 222 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (742)
+.++..+.+.|++..|.++...|+..+...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777666666665545444444
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.0078 Score=48.73 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhCCC-CCChhhHHHHHHHHccCC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 044169 187 NCLLAGYAKNALFDQAFSFFLKLDGIDV-QPNHYTYSTMLAICGSLS--------AIDEGKQLHAQTMKLQYLSKTAVSN 257 (742)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 257 (742)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677999999999999999999 899999999998877543 3456788899999999999999999
Q ss_pred HHHHHHHh
Q 044169 258 ALLTMYIK 265 (742)
Q Consensus 258 ~li~~~~~ 265 (742)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.94 E-value=0.037 Score=60.01 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCCh
Q 044169 606 LKMAEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEM 683 (742)
Q Consensus 606 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 683 (742)
...+.+..++...+ +|.++.+|..++-.+...|++++|...++++.+.... ...| .....+....+.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~----~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNY----VLLGKVYELKGDNRLA 472 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHH----HHHHHHHHHcCCHHHH
Confidence 34555666666564 6778889999999999999999999999999887731 1122 2223334455678888
Q ss_pred HHHHHHHHHHHHH
Q 044169 684 PKVYEKLKQLMQQ 696 (742)
Q Consensus 684 ~~~~~~~~~l~~~ 696 (742)
.+.|.+...+...
T Consensus 473 ~~~~~~A~~L~P~ 485 (517)
T PRK10153 473 ADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHhcCCC
Confidence 8888887766543
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.42 Score=48.27 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 044169 464 EAYNKCGSWEDAERVFSQLTA-------ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHS 535 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 535 (742)
+...+.|.+.+|.+.+.+... ++...|.....+..+.|+.++|+.--++..+ +.|.. ..+..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 345677888888888877652 2334566666677788888888888777765 33332 1233333455667
Q ss_pred CcHHHHHHHHHHhHH
Q 044169 536 GLVQDGQKVFESMVK 550 (742)
Q Consensus 536 g~~~~a~~~~~~m~~ 550 (742)
++|++|.+-++...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888888877755
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.88 E-value=0.0092 Score=61.92 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=81.0
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhccCC-C-----CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHH
Q 044169 250 LSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ-R-----NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFT 323 (742)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 323 (742)
+.+......+++......+++++..++.+... + -..+..++++.|...|..++++.++..=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444455555555555566666666555433 1 12345678888888888888888888888888888888888
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 044169 324 VALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGL 367 (742)
Q Consensus 324 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 367 (742)
.+|..+.+.|++..|.++...|...+.-.+..++.--+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887777666655555545444444
No 196
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0099 Score=59.62 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCE
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNK 669 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~ 669 (742)
..++..+...|.+.+++..|++..+++++++|+|...+..-+.+|...|+++.|+..|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------------- 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------------- 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------------
Confidence 45677788889999999999999999999999999999999999999999999999999998644
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 044169 670 IYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700 (742)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 700 (742)
|....+..++..+.+++++.
T Consensus 322 -----------P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 322 -----------PSNKAARAELIKLKQKIREY 341 (397)
T ss_pred -----------CCcHHHHHHHHHHHHHHHHH
Confidence 23455666777777776654
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.094 Score=49.32 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHH-----HHH
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVG-----SSL 462 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~-----~~l 462 (742)
..+.++..+.-.|.+.-.+..+++.++...+.++.....+.+.-.+.|+.+.|...++...+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345677777778888889999999998777778888888999999999999999999988765433333333 333
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFL 526 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 526 (742)
...|.-.+++.+|...|.++. ..|++.-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 445666788899999998887 345556666555566678999999999999984 66665444
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.79 E-value=0.087 Score=52.78 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCCCH--HHHHHHHHHHhc
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQN-GRARKAIILFEKMVVE----GIRPTN--STFLAVLSACSH 534 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~~--~t~~~ll~a~~~ 534 (742)
.++.|...|++..|-+++.+ +...|-.. |++++|++.|++..+. | .+.. ..+..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455666666665554433 34455555 6666666666665432 2 1111 234455555666
Q ss_pred cCcHHHHHHHHHHhHHhcC----CCCcHH-HHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 535 SGLVQDGQKVFESMVKEYG----ILPEEA-HYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~----~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
.|++++|.++|+++....- .+.+.. .+-..+-++...|+...|.+.+++
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666544210 011111 122223344455666666666554
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.27 Score=52.22 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
+...+..-+.+...+.-|-++|..|-. ..+++++....|++++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 344444444455555666666666521 2345666666777777777666655
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.78 E-value=1.1 Score=48.42 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHH-----
Q 044169 418 ACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNS----- 492 (742)
Q Consensus 418 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 492 (742)
+-+....-.+..++...|.-++|.+.|-+. + .|. +.+..+....++.+|.++-+...-|.+.+.-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 334445555666666666666665554322 1 111 23445555666666666666555443332211
Q ss_pred ---------HHHHHHHcCCHHHHHHHHHHHH
Q 044169 493 ---------MIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 493 ---------li~~~~~~g~~~~A~~~~~~m~ 514 (742)
-|.-+.+.|++-+|-+++.+|-
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 1233444555555555555554
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.78 E-value=0.0069 Score=62.19 Aligned_cols=66 Identities=18% Similarity=0.002 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.+...|+.+..+|.+.|++++|+..++++++++|++.. +|..++.+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999998874 4999999999999999999999888875
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.74 E-value=0.021 Score=52.41 Aligned_cols=98 Identities=17% Similarity=0.333 Sum_probs=74.7
Q ss_pred HHHHHhc--CCCCchHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------------
Q 044169 476 ERVFSQL--TAADVVSWNSMIKAYSQ-----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG------------ 536 (742)
Q Consensus 476 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------------ 536 (742)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445544 35566677777777764 4667777778889999999999999999998776521
Q ss_pred ----cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 537 ----LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 537 ----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
+-+-|++++++|. .+|+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 2467899999994 589999999999999999887753
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.72 E-value=0.013 Score=57.35 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+--+..++...|+++.|...|+++++..|++ +.++..++.+|...|++++|.++++.+.+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444445555555555555555555555543 33334445555555666666666555543
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.72 E-value=0.0098 Score=54.56 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHchhCCCCCChhhHHHHHHHHccC----------------CChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044169 197 ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL----------------SAIDEGKQLHAQTMKLQYLSKTAVSNALL 260 (742)
Q Consensus 197 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li 260 (742)
|..+=....+..|.+.|+.-|..+|+.||+.+=+. .+-+-|.+++++|...|+.||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 44444445555566666666666666666555431 23456778888888888888888888888
Q ss_pred HHHHhCCC
Q 044169 261 TMYIKCGM 268 (742)
Q Consensus 261 ~~~~~~g~ 268 (742)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 87765543
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.71 E-value=0.41 Score=46.56 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=28.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
+..-|.+.|.+..|..-++.+++++.-.|. .+....++++|...|..++|.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334455555555555555555554432222 2244455566666666666655544
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.70 E-value=0.017 Score=48.71 Aligned_cols=86 Identities=20% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC---CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP---IK-PT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD---DAAVYVTLSNMYA 635 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~---~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 635 (742)
+..++-..|+.++|+.+|++.. .. ++ ...+-.+.+.+...|++++|..++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445556666666666666532 11 11 234555666677777777777777777777666 5555666667777
Q ss_pred hcCCHHHHHHHHHH
Q 044169 636 EAGLQADAEEQRKL 649 (742)
Q Consensus 636 ~~g~~~~A~~~~~~ 649 (742)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777776543
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=1.3 Score=48.33 Aligned_cols=323 Identities=13% Similarity=0.073 Sum_probs=165.2
Q ss_pred HHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC---hhHHHHHHccCCC--CCcccHHHHHHHHHhCC
Q 044169 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGD---IKSMVAVVKQMPY--LDIASCNCLLAGYAKNA 197 (742)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 197 (742)
+++.+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+-+++.. .+.++|..+.+--...|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 4555566677777777776654332222 5677777777776633 2333444444544 56678888888778889
Q ss_pred ChHHHHHHHHHchhCCCC----CChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 044169 198 LFDQAFSFFLKLDGIDVQ----PNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAE 273 (742)
Q Consensus 198 ~~~~A~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (742)
+++-|..+++.=...+-. .+..-+...+.-+...|+.+...+++-.+...- +...+. .-..+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~------~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF------MTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH------HHHHhchhhh
Confidence 999888887654333211 133345556666667777777766666655431 011111 0111223334
Q ss_pred HHHhccCC-CCcchHHHHHHHHHhCCCcchHHHHHHHH------HHCCCCCCHHHHHHHHHHHhccCChhH-HHHHHHH-
Q 044169 274 SVFEGLVQ-RNVISWTAIINGFKQHGDYEKPLRLVCLM------REDGIDPNEYTFTVALASCASLRNSHM-GYMFHAQ- 344 (742)
Q Consensus 274 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~i~~~- 344 (742)
.+|.+..+ .|..+ +- .+.+.++-.+++..|..= ...|..|+..+ .-.+|++.....- ++.+-++
T Consensus 593 ~lY~~~~r~~~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHhhhhhhhhHHHHHHHHH
Confidence 44433322 11111 11 111222222222211110 01233333333 3334444433111 1111111
Q ss_pred --------HH-HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc
Q 044169 345 --------VI-KRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415 (742)
Q Consensus 345 --------~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 415 (742)
+. +.|......+.+--+.-+...|+..+|.++-.+.. -||-..|---+.+++..+++++-+++-+.+.
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskk-- 742 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKK-- 742 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--
Confidence 11 12333333344444555666677777777777776 6676677667777777777776665554432
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 416 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
.+..|.....+|.+.|+.++|...+..+.. .. -.+.+|.++|++.+|.++
T Consensus 743 ----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 ----SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ----CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 245566666777777777777666554321 11 355667777777666654
No 208
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.68 E-value=0.029 Score=45.52 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCC-CCChHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhCCCCchhHHH
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDA-ACDEFTYSSILKACSLLP--------SLATCEQIHSRIVKSKFESNVHVGS 460 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~~~~~~~~~~~ 460 (742)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. .+.....+++.+...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777999999999999999999 899999999998877643 2345667788888888999999999
Q ss_pred HHHHHHHh
Q 044169 461 SLIEAYNK 468 (742)
Q Consensus 461 ~li~~~~~ 468 (742)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887664
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.65 E-value=0.004 Score=41.93 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
.+|..+..++...|++++|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999998887764
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.58 E-value=0.0087 Score=45.71 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=50.9
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
..+|.+.+++++|++.++++. ..| ++..|......+.+.|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888764 444 56677778888899999999999999999999977655443
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.56 E-value=0.073 Score=53.22 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCC-CCcHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKM----VVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKE---YGI-LPEEA 559 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~ 559 (742)
.|..|...|.-.|+++.|+..-+.- .+.|-+... ..+..+.+++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566667777776654432 222322222 34666677777777777777777654320 111 11223
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-Cch
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP--------IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL-----DPD-DAA 625 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~-~~~ 625 (742)
+..+|...|.-..++++|+.++.+-. .-....++-+|..++...|+.++|..+.++.++. +|. ...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 44566777777777788877765421 1123456677888888888888888888777663 221 223
Q ss_pred hHHHHHHHHHhcCCH
Q 044169 626 VYVTLSNMYAEAGLQ 640 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~ 640 (742)
.-..|.+.-...|.-
T Consensus 357 ar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 357 ARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhHHHHHHhCCC
Confidence 344555555555543
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.56 E-value=0.28 Score=50.05 Aligned_cols=159 Identities=15% Similarity=0.090 Sum_probs=90.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------CchHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTAA-------DVVSWNSMIKAYSQ---NGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344466666666666666666532 11111223344455 6777777777777555555666677766665
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH----HHHHHH---Hh-C----CC--C
Q 044169 531 ACSH---------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE----IALIFI---SN-L----PI--K 587 (742)
Q Consensus 531 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~----~~--~ 587 (742)
.|-. ....++|+..|.+. +.+.|+...--.++..+...|... +..++- .. . .. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4321 22366777777654 445555443333333444444321 222221 11 0 01 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.|-=.+.+++.++.-.||.+.|.+.++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 33444577888999999999999999999999874
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.54 E-value=1 Score=45.13 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=77.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLL-PSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
.+..|...|++..|-..+.++ ...|... |+++.|.+.|....+ .|...|
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~---------------~y~~e~ 149 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAE---------------LYEQEG 149 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHH---------------HHHHTT
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHH---------------HHHHCC
Confidence 345666666666666555543 3345555 677777766665543 233333
Q ss_pred CHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCcHHHHHHH
Q 044169 471 SWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP-----TNS-TFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 471 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~ 544 (742)
....+..+ +..+...+.+.|++++|.++|++....-... +.. .|...+-++...|++..|.+.
T Consensus 150 ~~~~a~~~-----------~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 150 SPHSAAEC-----------LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp -HHHHHHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ChhhHHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33333322 2335566677777777777777766532211 111 222233345556777777777
Q ss_pred HHHhHHh-cCCCCc--HHHHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 044169 545 FESMVKE-YGILPE--EAHYSCMVDLLGR--AGKLEIALIFISNLP 585 (742)
Q Consensus 545 ~~~m~~~-~~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 585 (742)
+++.... .++..+ ......|++++-. ...+++|+.-|+.+.
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 7776432 122222 2345566666643 335667777777665
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.28 Score=46.26 Aligned_cols=133 Identities=12% Similarity=-0.005 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CCCCcHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY----GILPEEAHYSCMV 565 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~l~ 565 (742)
-++++..+.-.|.+.-.+.++++.++..-+-+......+.+.-.+.|+.+.|..+|+...+.. ++.-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345666666677888888888888886545566777888888888999999999998765432 2333333444455
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
..|.-++++.+|...+.+++ .+.|+...|+-.-+..-.|+...|.+..+.+.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 56777778888888888776 2234555555555555677888888888888888885
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.40 E-value=0.072 Score=52.22 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP----TAPIWRPLFA 598 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~ 598 (742)
|...+....+.|++++|...|+.+.+.+.-.+- ...+..+..+|...|++++|...|+.+. ..| ....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 443333334456666666666666653311110 2344556667777777777777766653 112 2444555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.+...|+.+.|...++++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677888889999999998888886543
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.22 E-value=0.52 Score=44.49 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=87.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc-
Q 044169 464 EAYNKCGSWEDAERVFSQLTA--AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSH- 534 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~- 534 (742)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...+++.++. -|+. .-+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344556777777777776651 21 124455667777778888888888777764 3433 222222222211
Q ss_pred ------------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 044169 535 ------------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI--WRPLFAAC 600 (742)
Q Consensus 535 ------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~ 600 (742)
.+...+|...|+.++ .-|=......+|...+..+. +... --.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 111223344444333 33333444445544444332 1111 11234458
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHH
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~ 645 (742)
.+.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8899999999999999999997544 56778889999999885543
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.20 E-value=0.011 Score=45.85 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILEL----DPD---DAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666666666543 221 24577888888888888888888887764
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.19 E-value=1.8 Score=44.43 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=58.6
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 579 IFISNLPIKP----TAPIWRPLFAA--CRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 579 ~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.++++....| +...-|.|..| ...+|++.++.-...-+.+..| ++.+|..+|-......+|++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3344444333 45566777777 5789999999999999999999 99999999999999999999999997653
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.04 E-value=2.1 Score=43.82 Aligned_cols=85 Identities=5% Similarity=-0.141 Sum_probs=61.4
Q ss_pred CCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHH
Q 044169 57 KRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELG 136 (742)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 136 (742)
+.|..+|- .++.-| -..|..++..+.+++|..--+ .-..+|..-+++-....++...
T Consensus 39 PtnI~S~f-qLiq~~--------~tq~s~~~~re~yeq~~~pfp--------------~~~~aw~ly~s~ELA~~df~sv 95 (660)
T COG5107 39 PTNILSYF-QLIQYL--------ETQESMDAEREMYEQLSSPFP--------------IMEHAWRLYMSGELARKDFRSV 95 (660)
T ss_pred chhHHHHH-HHHHHH--------hhhhhHHHHHHHHHHhcCCCc--------------cccHHHHHHhcchhhhhhHHHH
Confidence 44677898 899888 888888888999999875322 3456677777776677788888
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 044169 137 RRYHALITKTAVCGDQFVTASLVNMYAKCG 166 (742)
Q Consensus 137 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 166 (742)
..++.+.++..+ +...|...++--.+.+
T Consensus 96 E~lf~rCL~k~l--~ldLW~lYl~YIRr~n 123 (660)
T COG5107 96 ESLFGRCLKKSL--NLDLWMLYLEYIRRVN 123 (660)
T ss_pred HHHHHHHHhhhc--cHhHHHHHHHHHHhhC
Confidence 888888877654 4566766666444433
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.88 E-value=2.3 Score=42.87 Aligned_cols=222 Identities=15% Similarity=0.163 Sum_probs=119.4
Q ss_pred HhCCCHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcC-CCCChH--HHHHHHHHhcC---CCC
Q 044169 365 SGLGEIWEAKKQLKEM-GKSA-SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRND-AACDEF--TYSSILKACSL---LPS 436 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~g~ 436 (742)
.+.|..+.|...-++. +..| -...+...+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3566777666666555 2233 34567888899999999999999988765532 344432 12222222111 123
Q ss_pred HHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHV-GSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVV 515 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 515 (742)
...|...-.+..+ +.||..- -..-...|.+.|++.++-.+++.+-+..+..--..+..+.+.|+. ++.-+++...
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc--HHHHHHHHHH
Confidence 3444444333333 3444321 222345677788888888887777532222222223333444442 3333333221
Q ss_pred -cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHH
Q 044169 516 -EGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA-GKLEIALIFISNLPIKPTAPI 592 (742)
Q Consensus 516 -~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~ 592 (742)
..++||. .....+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++...+-+....|..+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 1256655 455666666667777777666555442 3456666777777665444 777777777765543343333
Q ss_pred H
Q 044169 593 W 593 (742)
Q Consensus 593 ~ 593 (742)
|
T Consensus 398 W 398 (531)
T COG3898 398 W 398 (531)
T ss_pred c
Confidence 3
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.14 Score=51.57 Aligned_cols=137 Identities=12% Similarity=-0.011 Sum_probs=97.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (742)
...|.+.|++..|...|++.+.. +.. ...-+.++...... .-...+..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~~-~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LEY-RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hhc-cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777788887777776642 000 01111122211111 112356778889999999
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 044169 574 LEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA-EEQRKLM 650 (742)
Q Consensus 574 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A-~~~~~~m 650 (742)
+.+|++.-++.. .++|.-..---..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887754 3456777767778899999999999999999999999999999999888877776655 7788888
Q ss_pred Hh
Q 044169 651 KM 652 (742)
Q Consensus 651 ~~ 652 (742)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 64
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.79 E-value=1.3 Score=47.35 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=100.9
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHH
Q 044169 241 HAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEY 320 (742)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 320 (742)
++++.+.|-.|+... +...++-.|++.+|.++|. ++|....|+++|..|+--+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMFD------ 675 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMFD------ 675 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHHH------
Confidence 445666665566543 3455666788888887775 4566666666666654210
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 044169 321 TFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQ 400 (742)
Q Consensus 321 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g 400 (742)
..+-+...|..++-+.+.+.--+... +..--.+-..++...|+.++|..+.-. +|
T Consensus 676 ----~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~~d-------------------~g 730 (1081)
T KOG1538|consen 676 ----YAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEICGD-------------------HG 730 (1081)
T ss_pred ----HHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhhhc-------------------cc
Confidence 11222333333333333222111100 000001223344455555555444322 22
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
-.+-+.++-+++- ..+..+...+..-+.+...+..|-++|..+-+. ..++++....+++.+|..+-+
T Consensus 731 W~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 731 WVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhh
Confidence 2222222222221 112233333333444455555566666555332 245566666677777777666
Q ss_pred hcCC--CCch-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 044169 481 QLTA--ADVV-----------SWNSMIKAYSQNGRARKAIILFEKMVVE 516 (742)
Q Consensus 481 ~~~~--~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 516 (742)
+.++ +|+. -|.---.+|.+.|+-.+|.++++++...
T Consensus 798 ~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 798 KHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 6652 3332 1111224566777778888887776543
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.79 E-value=0.7 Score=38.81 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=84.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 4467888888888887752 34444555555444455556666666666332222 223444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 578 LIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
...+-.+. .+..-....+.+..++|..+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333322 234445566777888899999999999888654448999999999999999999999999999999873
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.62 E-value=0.25 Score=42.54 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=56.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHh
Q 044169 565 VDLLGRAGKLEIALIFISNLP----IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAE 636 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~ 636 (742)
.....+.|++++|.+.|+.+. ..| ....-..++.++.+.+++++|...+++.++++|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334456777777777777664 222 2345566788888999999999999999999887654 23333434444
Q ss_pred cCC---------------HHHHHHHHHHHHhC
Q 044169 637 AGL---------------QADAEEQRKLMKMK 653 (742)
Q Consensus 637 ~g~---------------~~~A~~~~~~m~~~ 653 (742)
... ..+|..-|+...++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 433 55666666655543
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.53 E-value=0.076 Score=47.15 Aligned_cols=61 Identities=25% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.....++..+...|+++.|...+++++..+|-|...|..++.+|...|+..+|.+.++.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456677778899999999999999999999999999999999999999999999998875
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.46 Score=46.27 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 520 PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG---KLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 520 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
-|...|..|..+|...|+.+.|...|....+-.| ++...+..+..++..+. ...++.++|+++. ..| |..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3446677777777777777777777777765333 34445555555544332 3456777777754 344 455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
.|...+...|++.+|...++.+++..|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 56666888888888888888888877643
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.43 E-value=0.23 Score=49.08 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHhCCCcHHHHHHHHHHhHcC--CCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 396 FFRNQKTEEAIEAFSQMVRND--AACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 396 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
+.++.+.++|+..+.+-...- ..-.-.++..+..+.++.|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344566666666666544321 11122344455555555555554443
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.42 E-value=3.8 Score=42.15 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=106.1
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++. |+...|.++|+.=.+. ++.+.......
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567788888888888899999999999998 66777888888886664 7888999999876542 22333344567
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 565 VDLLGRAGKLEIALIFISNLP--IKPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+.-+.+-++-+.|..+|+... ...+ ...|..++..-...|+...+..+-+++.+.-|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 788889999999999998543 2223 6789999999999999999999999999998853
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.34 E-value=0.022 Score=44.13 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
++..+...+...|++++|++.++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555666666666666665554
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.31 E-value=0.23 Score=42.32 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 517 GIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 517 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
...|+..+..+++.+|+..|++..|+++.+...+.++++-+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677777777777777777777777777777777777666667766664
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.30 E-value=5.1 Score=42.98 Aligned_cols=182 Identities=14% Similarity=0.110 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLTAA---DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA 531 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 531 (742)
+..+|..-++--.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777777778888888888888887633 2235555555555558888888887776665333333333333334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHH-HHHHHHHHHhhcCCHHHHH---HHHHhCC-CCCCHHHHHH----HHHH-HH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGRAGKLEIAL---IFISNLP-IKPTAPIWRP----LFAA-CR 601 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~----l~~~-~~ 601 (742)
+-..|+...|..+++.+..+ . |+.. .-..-+....+.|..+.+. +++.... .+-+...... .... +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999764 3 5543 3344556777889888888 5555432 2222222222 2222 45
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
..++.+.|..++.++.+..|++...|..+++.....+-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 67889999999999999999999999999998777663
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.20 E-value=3 Score=39.73 Aligned_cols=196 Identities=19% Similarity=0.119 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS- 530 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 530 (742)
.........+...+.+..+...+.... ......+..+...+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444455555556666666655555442 22333444555555556666666666666665322221 11222222
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCC
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGI--LPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP--TAPIWRPLFAACRCHSD 605 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~ 605 (742)
.+...|+++.+...+..... ..- ......+......+...++.++|...+.+.. ..+ ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666677777777666632 111 1122233333444556667777777766543 222 24556666666777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++.+...+....+..|.....+..+...+...|.++++...+.......
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777555566666666666666777777766665433
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=95.09 E-value=0.65 Score=41.12 Aligned_cols=93 Identities=8% Similarity=-0.109 Sum_probs=66.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSD 605 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 605 (742)
..--+...|++++|..+|+-+.. --..+...+..|..++...|++++|+..|.... ...|+...-.....+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33345677899999999988754 222345567788888888999999998887532 23344445556667788899
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 044169 606 LKMAEFISKQILELDPDD 623 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~ 623 (742)
.+.|...++.+++ .|.+
T Consensus 121 ~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 121 AAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHHHHh-Ccch
Confidence 9999999988888 4543
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.03 E-value=0.19 Score=41.92 Aligned_cols=88 Identities=20% Similarity=0.137 Sum_probs=66.7
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC---chhHHHHHHHHHhcCCH
Q 044169 567 LLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELD-PDD---AAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~y~~~g~~ 640 (742)
++...|+++.|++.|.+.. .+.....||.-..+++-+|+.++|..-+++++++. |.. ...|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 5667788888888887643 23457778888888888888888888888888874 332 23577778888888999
Q ss_pred HHHHHHHHHHHhCC
Q 044169 641 ADAEEQRKLMKMKE 654 (742)
Q Consensus 641 ~~A~~~~~~m~~~~ 654 (742)
++|..-|...-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99888888776655
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=94.97 E-value=4.1 Score=42.59 Aligned_cols=157 Identities=10% Similarity=0.141 Sum_probs=83.4
Q ss_pred hHH--HHHHHHHHHc-----CCHHHHHHHHHHHH-HcCCCCCHH-HHHHHHHHHhc---------cCcHHHHHHHHHHhH
Q 044169 488 VSW--NSMIKAYSQN-----GRARKAIILFEKMV-VEGIRPTNS-TFLAVLSACSH---------SGLVQDGQKVFESMV 549 (742)
Q Consensus 488 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~-~~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 549 (742)
..| ...+.+.... ...+.|+.+|.+.. .+.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 13457888888887 222567653 34333332211 122344445544444
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-
Q 044169 550 KEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV- 626 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~- 626 (742)
+ --+-|......+..++.-.|+++.|...|++.. ..|| ..+|......+.-.|+.++|.+.+++++++.|.-..+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 3 122345555556666666666777777776653 4554 4455555555666777777777777777777753322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHH
Q 044169 627 -YVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 627 -~~~l~~~y~~~g~~~~A~~~~ 647 (742)
....+++|+..+ .++|.+++
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHH
Confidence 223333455443 34454443
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=8.1 Score=43.15 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=104.5
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHh----hccccchHHHHHHHHHHHHhccCCChhHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSY----CSREECLELGRRYHALITKTAVCGDQFVT 155 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (742)
.+...++-|+.+-+.-. .|..+...+... |-+.|++++|.+.+-+.+.. ++|.
T Consensus 345 ~kK~ly~~Ai~LAk~~~------------------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s---- 401 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQH------------------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS---- 401 (933)
T ss_pred HHhhhHHHHHHHHHhcC------------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH----
Confidence 78888888887765532 244444444444 44678888888777555433 2332
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCC
Q 044169 156 ASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLS 232 (742)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 232 (742)
.+|.-|....++.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.+
T Consensus 402 -~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 -EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 234445555555555555555543 344556788999999999998888877665 3322 122456677777777
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC
Q 044169 233 AIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR 282 (742)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 282 (742)
-+++|..+-..... ...+... .+-..|++++|.+.+..++-+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 77777665544322 2333333 344668899999999988753
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=94.75 E-value=0.61 Score=48.50 Aligned_cols=118 Identities=12% Similarity=0.039 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHhHHhcCCCCcHH-HHHHHHHHHhh---------cCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcC
Q 044169 537 LVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGR---------AGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHS 604 (742)
Q Consensus 537 ~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g 604 (742)
..+.|..+|.+......+.|+.. .|..+..++.. .....+|.++.++.. . ..|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45678888888874445666643 45554444322 223456666666543 3 447777777777778888
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 605 DLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+++.|...++++..++|+.+.++...++...-.|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999998855433
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=1.3 Score=43.07 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=81.4
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP---LFAACRCHSDLK 607 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 607 (742)
.....|+..+|...|+..... .+-+...--.|+++|...|+.+.|..++..++.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888887652 223345566788888999999999999988874433333333 222233333322
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.. .++.-...+|+|...-..|+..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 2334455689999999999999999999999998776665543
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.58 E-value=2 Score=46.37 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=73.9
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYS-CMVDLLGRAGKLEIALIFISNLPI-K-----PTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~ 607 (742)
....+.|.++++.+.+.+ |+...|. --.+.+...|++++|++.|++... + -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 446677788888776532 4544433 334666777888888888876431 1 12233344555677788888
Q ss_pred HHHHHHHHHHhcCCCCchhH-HHHHHHHHhcCCH-------HHHHHHHHHHHh
Q 044169 608 MAEFISKQILELDPDDAAVY-VTLSNMYAEAGLQ-------ADAEEQRKLMKM 652 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~-~~l~~~y~~~g~~-------~~A~~~~~~m~~ 652 (742)
+|...+.++.+...-+...| ...+-+|...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888888765444443 3445556777888 888888877753
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.38 Score=47.08 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=113.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH----HHHHHHhhcCCH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS----CMVDLLGRAGKL 574 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~l~~~~~~~g~~ 574 (742)
-+|+..+|...++++++. .+.|...+.-.-++|...|+.+.-...++++.- ...+|...|+ .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 566667888888899999999888888888764 3355554433 344566789999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD----DAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
++|.+.-++.. ++| |.-.-.++.......|.+.++.++..+--..-.+ -..-|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988764 333 5555566667778889999998887765443221 12234455666777899999999998
Q ss_pred HHHhCCCCCCCc
Q 044169 649 LMKMKEISKEPG 660 (742)
Q Consensus 649 ~m~~~~~~~~~~ 660 (742)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 776555656554
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.46 E-value=0.26 Score=51.08 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNL-PIKPTA----PIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555566666666666665552 244442 23556666666666666666666666654
No 242
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.46 E-value=4.4 Score=38.16 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=28.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAAC--DEFTYSSILKACSLLPSLATCEQIHSRIVKS 450 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 450 (742)
...+.+.|++++|...|+++...-... -....-.++.++-+.|+++.|...++...+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666665542111 1223334445555555666655555555443
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.39 E-value=0.42 Score=45.59 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=79.6
Q ss_pred HHHHHHHhcC--CCCchHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------
Q 044169 474 DAERVFSQLT--AADVVSWNSMIKAYSQN-----GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG---------- 536 (742)
Q Consensus 474 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 536 (742)
..++.|.... ++|-.+|-+.+..+... +.++=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 66777888888877643 566767778899999999999999999999876532
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 537 ------LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 537 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
+-+-++.++++| +.+|+.||.++-..|+.++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 124578999999 55899999999999999999988643
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.39 E-value=4.8 Score=38.24 Aligned_cols=197 Identities=19% Similarity=0.136 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-hHHHHHHH-H
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKS-KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--ADV-VSWNSMIK-A 496 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 496 (742)
..+......+...+....+...+...... ........+......+...++...+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444555555555555555544432 2234445555566666667777777777776653 222 22333333 6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhc
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRP----TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRA 571 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 571 (742)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+....+ .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8888999999999998865 344 223444444556778899999999998865 2333 366788888899999
Q ss_pred CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 572 GKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 572 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
++++.|...+.... ..|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999988764 3444 445555555655777899999999999999885
No 245
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.34 E-value=0.15 Score=45.99 Aligned_cols=89 Identities=16% Similarity=0.026 Sum_probs=67.5
Q ss_pred HHhhcCCHHHHHHHHHhCC-C-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 567 LLGRAGKLEIALIFISNLP-I-KP-----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~-~-~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
-+.+.|++++|..-|.+.. . ++ ..+.|..-..+..+.+..+.|+.-..++++++|....++...+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3455666666666555432 1 11 234455556677888999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 044169 640 QADAEEQRKLMKMKEI 655 (742)
Q Consensus 640 ~~~A~~~~~~m~~~~~ 655 (742)
+++|++-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987654
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.33 E-value=0.46 Score=42.08 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH----HhcCCCCcHHH
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMV----KEYGILPEEAH 560 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 560 (742)
.++..+...|++++|..+.+++.... +-|...|..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455556666666666666666531 2234556666666666666666666665543 23466666554
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.29 E-value=1.7 Score=38.11 Aligned_cols=63 Identities=14% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA-GKLEIALIFISNLPIKPTAPIWRPLFAAC 600 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 600 (742)
...+++.|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+.. ++..|..++..+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 34455566666666666666555411 11222223223 56666666666522 455565555544
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.29 E-value=2.9 Score=36.59 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=58.3
Q ss_pred hHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCC
Q 044169 119 FVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNAL 198 (742)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 198 (742)
....++..+...+.......+++.+.+.+ ..++..++.++..|++.+ .......++. ..+......+++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34566666666677888888888888876 467788999999998764 3444444442 2233445556667777777
Q ss_pred hHHHHHHHHHc
Q 044169 199 FDQAFSFFLKL 209 (742)
Q Consensus 199 ~~~A~~~~~~m 209 (742)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 77777776665
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.12 E-value=0.28 Score=46.71 Aligned_cols=98 Identities=8% Similarity=0.086 Sum_probs=71.5
Q ss_pred HHHHHccCC--CCCcccHHHHHHHHHhC-----CChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCC-----------
Q 044169 171 MVAVVKQMP--YLDIASCNCLLAGYAKN-----ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLS----------- 232 (742)
Q Consensus 171 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 232 (742)
.++.|...+ ++|-.+|-+.+..+... +..+=....++.|.+.|+.-|..+|+.+|..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445666665 57777888888777543 456666777888999999999999999998875532
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 044169 233 -----AIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM 268 (742)
Q Consensus 233 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (742)
+-+-+..++++|..+|+.||-.+-..|++++.+.+.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223466777888888888887777777777766654
No 250
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=12 Score=41.54 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=44.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHS 604 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (742)
....+..|.+.|-+++-.-++.+| | .++.+|.-.--+.++.++|+++.++ ..|...|..|+..+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 344455566666666666666555 2 1233333344455667777777665 558999999999876655
Q ss_pred CHHHHH
Q 044169 605 DLKMAE 610 (742)
Q Consensus 605 ~~~~a~ 610 (742)
.+-.+.
T Consensus 705 e~~~~l 710 (846)
T KOG2066|consen 705 EFIKAL 710 (846)
T ss_pred HHHHHH
Confidence 443333
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.03 E-value=5.3 Score=41.05 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCCh------hhHHHHHHHHHh---CCCcHHHHHHHHHHhHcCCCCChHHHHHHHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKSASS------VSWNAQIAGFFR---NQKTEEAIEAFSQMVRNDAACDEFTYSSILK 429 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 429 (742)
.++-.|....+++...++.+.+...|+. ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777777777777777433321 111123345555 7788888888888666555667777766655
Q ss_pred Hh
Q 044169 430 AC 431 (742)
Q Consensus 430 ~~ 431 (742)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.96 E-value=0.71 Score=39.40 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHH
Q 044169 553 GILPEEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPTAPIWRPLFAAC 600 (742)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~ 600 (742)
...|+..+..+++.+|+..|++..|+++++... .+-+...|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445666667777777777777777766665432 333455666666544
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.85 E-value=2.4 Score=45.83 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhC-CCCch-----hHHHHHHHHHH----hcCCHHHHHHHHHhcCC--CCchHHH
Q 044169 424 YSSILKACSLLPSLATCEQIHSRIVKSK-FESNV-----HVGSSLIEAYN----KCGSWEDAERVFSQLTA--ADVVSWN 491 (742)
Q Consensus 424 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~-----~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~ 491 (742)
+..+++...-.|+.+.+.+.+....+.+ +.... -.|...+..++ .....+.|.++++.+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455666666778888877777665532 21111 12222222222 23456677777777663 5655554
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH-H
Q 044169 492 SMI-KAYSQNGRARKAIILFEKMVVEG--I-RPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV-D 566 (742)
Q Consensus 492 ~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~-~ 566 (742)
-.- ..+...|+.++|++.|++..... . +.....+.-+...+....+|++|.+.|..+.+... .+...|.-+. -
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence 433 34445677777777777654311 1 11122344445556666777777777777765322 2333333222 3
Q ss_pred HHhhcCCH-------HHHHHHHHhCC
Q 044169 567 LLGRAGKL-------EIALIFISNLP 585 (742)
Q Consensus 567 ~~~~~g~~-------~~A~~~~~~~~ 585 (742)
++...|+. ++|.++|.+.+
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44555555 66666666544
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.85 E-value=4.7 Score=42.32 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI--KPT--APIWRPLFA 598 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~l~~ 598 (742)
.+-..+..++.+.|+.++|++.++++.++........+...|+.+|...+.+.++..++.+-.. -|. ...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3344566677788999999999999987554333445677899999999999999999987651 233 344555444
Q ss_pred HHHHcCC---------------HHHHHHHHHHHHhcCCCCc
Q 044169 599 ACRCHSD---------------LKMAEFISKQILELDPDDA 624 (742)
Q Consensus 599 ~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 624 (742)
-.+..++ -..|.++..++.+.+|-.+
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4443333 1235678888888887533
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.73 E-value=0.13 Score=31.96 Aligned_cols=32 Identities=31% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777774
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.72 E-value=0.19 Score=31.22 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777653
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=6.5 Score=37.14 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCchhH
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-------IKPTA-PIWRPLFAACRCHSDLKMAEFISKQILE----LDPDDAAVY 627 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 627 (742)
.+......|.+..++++|-..|.+-. .-++. ..+.+.+-.+....|+..|+..++.--+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566677777777665554332 11111 1233344445556677788887777554 356677777
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 044169 628 VTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 628 ~~l~~~y~~~g~~~~A~~~~ 647 (742)
..|+.+| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7887776 457777776554
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=2.4 Score=45.14 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=87.4
Q ss_pred HhcCCHHHHHHHHH--hcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044169 467 NKCGSWEDAERVFS--QLT-AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 467 ~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
.-.|+++++.+..+ ++. .-+..-.+.++.-+.+.|..+.|+++.+.-. .-| ....+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rF----eLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRF----ELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHH----HHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHh----HHHHhcCCHHHHHH
Confidence 34567777555444 111 2223446677777778888888887643221 123 23345788888877
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+.++. ++...|..|.+...+.|+++-|.+.|.+.. -+..|+-.|...|+.+.-.++.+.+.+.+-
T Consensus 340 ~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 340 IAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 64332 467788888888888999998888888876 355667777778887777777766655443
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 624 AAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
++....++.-.|+.++..+++.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHH
Confidence 2233333444566666665554
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.57 E-value=7.2 Score=37.38 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH--HHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLTAA------DVVSWNSMIKAYSQNGRARKAIILFEKMVVE-GIRPTN--STFL 526 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~ 526 (742)
...|+.-+. -.+.|++++|.+.|+.+... ...+--.++.++.+.+++++|+...++.... +-.||. ..|.
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344444333 34567777777777777621 1223444555666777777777777776653 222332 2233
Q ss_pred HHHHHHhccC----cHH---HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHH
Q 044169 527 AVLSACSHSG----LVQ---DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI--WRPLF 597 (742)
Q Consensus 527 ~ll~a~~~~g----~~~---~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~ 597 (742)
..+.-+.... +.. .|..-|+.++.++ |+.. -..+|...+..+. |... =....
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHH
Confidence 3333222211 112 2223333333221 2211 1112221111111 1111 12344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 598 AACRCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 598 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..|.+.|.+..|..-++.+++.-|+.+. .+..+..+|...|..++|.+.-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5688999999999999999998776444 466677889999999999888766653
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.40 E-value=0.76 Score=44.20 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCM 564 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 564 (742)
|+.-+.. .+.|++..|...|...++. -|+. ..+..|..++...|++++|..+|..+.++++-.|.. +.+-.|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5544433 3456677777777777764 2222 235556677777777777777777776655444432 445555
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 044169 565 VDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~ 584 (742)
.....+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555543
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.99 E-value=0.76 Score=44.19 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-HHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE---EAHYSCMVDLLGRAGKLEIALIFISNLP----IKPT-APIWRP 595 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-~~~~~~ 595 (742)
.|+.-+.. .+.|++..|...|...++.+ +-+ ...+--|..++...|++++|..+|..+. ..|. +..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555544 45577999999998888743 222 2234457788888888888888776543 2232 455566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
|.......|+.++|...++++++..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666777788888888888888887765543
No 262
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.87 E-value=0.37 Score=47.19 Aligned_cols=46 Identities=7% Similarity=0.040 Sum_probs=21.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
-|.++|.+++|+..|...+ .+.| +..++..-..+|.+..++..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 4555555555555554432 2223 44444444555555555544443
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.83 E-value=3.4 Score=43.33 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=88.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
.-.-+..+...-+++-++.++ +.||..+-..++ +--......++.+++++..+. | ...+..- ......|.
T Consensus 176 q~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~- 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH- 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc-
Confidence 333455666777777777776 577774433333 223344578888888877652 1 0000000 00001111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 575 EIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD--DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 575 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..+.+.+-..++-..+-..+...+.+.|..++|++.+..+++..|. +..+...|+..+...+.+.++..++.+-.+
T Consensus 246 --~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 --FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred --hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111111111223334455667778889999999999988877664 566788889999999999999888888755
Q ss_pred CCCCCC
Q 044169 653 KEISKE 658 (742)
Q Consensus 653 ~~~~~~ 658 (742)
....+.
T Consensus 324 i~lpkS 329 (539)
T PF04184_consen 324 ISLPKS 329 (539)
T ss_pred ccCCch
Confidence 444343
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=8.8 Score=37.57 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 574 (742)
.....|++.+|..+|+...... .-+...-..+..+|...|+.+.|..++..+-.+ ..-+ ......-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence 3345566666666666665531 112234445556666666666666666655221 1111 11112233444444444
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCC
Q 044169 575 EIALIFISNLPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELD--PDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 575 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~ 639 (742)
.+..++-.+....| |...--.+...+...|+.+.|.+.+-.+++.+ -+|..+-..|+.++.-.|.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444443344 44455555556666666666666665555543 2355555666666655553
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.74 E-value=7.1 Score=36.15 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
..||-|.--+...|+++.|.+.|+...+ +.|.. .+...-.-++.-.|+++-|.+-+...-+...-.|=...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3555555555566666666666666655 23332 22222222334456666665544443222122222222222221
Q ss_pred HHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CchhHHHHHHHHHhcC
Q 044169 567 LLGRAGKLEIALIFI-SNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD-------DAAVYVTLSNMYAEAG 638 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~y~~~g 638 (742)
+.=+..+|..-+ ++.. ..|..-|...+-.+.-.. . ..+.+++++.+-..+ -..+|..|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgk-i-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGK-I-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhh-c-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 222444554333 2222 334444544443322111 0 011122222221111 2458999999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
+.++|..+|+......
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999877543
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=2.8 Score=41.27 Aligned_cols=176 Identities=14% Similarity=0.070 Sum_probs=116.0
Q ss_pred HhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHhccCcHH
Q 044169 467 NKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVL----SACSHSGLVQ 539 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~ 539 (742)
-..|++.+|...++++. +.|..+|+--=.+|...|+.+.-...+++.... ..||...|..+- -++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34578888888888876 568888998889999999999999999998865 456664433332 2445789999
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHHcCCHHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIW-------RPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-------~~l~~~~~~~g~~~~a~~~ 612 (742)
+|++.-++..+ --+.|.-...++...+.-.|++.++.+++.+-...=+ ..| -...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99998877654 1233455666788889999999999999987651100 111 1111223455889999999
Q ss_pred HHHHH--hcCCCCchhHH---HHHHHHHhcCCHHHHHHH
Q 044169 613 SKQIL--ELDPDDAAVYV---TLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 613 ~~~~~--~~~p~~~~~~~---~l~~~y~~~g~~~~A~~~ 646 (742)
|++-+ +++.+|..... -+--.....-.|.+-.++
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 98644 34555664333 233333444444444333
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=21 Score=40.17 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCCcccHHHH----HHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccC
Q 044169 156 ASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCL----LAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL 231 (742)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 231 (742)
..-+++..+..-++-|..+-+.-.. |...-..+ .+-+-+.|++++|...|-+-... +.| ..++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 3445666666666666666544322 22222222 23345667777777777655432 122 1344444555
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV 280 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (742)
.+...-..+++.+.+.|+. +....+.|+.+|.+.++.+.-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555555666666666643 34444667777777777777666665544
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.44 E-value=2.2 Score=45.36 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=93.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 494 IKAYSQNGRARKAIILFEKMV-VEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
.+...-+|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcC
Confidence 345566889999877775211 11122 3447788888889999999988754432 2346778999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 573 KLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 573 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+++.|.++.++.. +...|..|......+|+++.|++.+++.. -+..|.-+|...|+.+.-.++.+....
T Consensus 333 ~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999987765 78899999999999999999999999753 367788889999998888777777766
Q ss_pred CC
Q 044169 653 KE 654 (742)
Q Consensus 653 ~~ 654 (742)
+|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.24 E-value=11 Score=36.11 Aligned_cols=185 Identities=13% Similarity=0.055 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNS 492 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 492 (742)
|-...|+..+. -.+.|++++|...|+.+..... +....+.-.++-++.+.+++++|...+++-. ...-..|-.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33444444443 4578999999999999987531 2235666677888899999999999888765 222234444
Q ss_pred HHHHHHHc-------CCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH
Q 044169 493 MIKAYSQN-------GRAR---KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS 562 (742)
Q Consensus 493 li~~~~~~-------g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 562 (742)
-|.+++.- .|.. +|..-|++.+.. -||. .-...|..-...+... =...=.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-----LA~~Em 171 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-----LAGHEM 171 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-----HHHHHH
Confidence 45544421 2333 344444555543 3443 1112222222211110 001123
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 563 CMVDLLGRAGKLEIALIFISNLPIK-----PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.+.+-|.+.|.+..|..-+++|... .....+-.+..+|...|-.++|.....-+-...|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4567788888888887777766411 1244556677788888988888887776666667654
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.66 E-value=1.4 Score=36.95 Aligned_cols=87 Identities=14% Similarity=0.012 Sum_probs=37.4
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC-CHH---HHHHHHHHHHHcCC
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKP-TAP---IWRPLFAACRCHSD 605 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p-~~~---~~~~l~~~~~~~g~ 605 (742)
.+..|+++.|++.|.+... -.+.....||.-..+|.-+|+.++|++=+++.. ..| ... .|..-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3344444555554444432 122233344444444544555555544444321 011 111 11222223555666
Q ss_pred HHHHHHHHHHHHhcC
Q 044169 606 LKMAEFISKQILELD 620 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~ 620 (742)
.+.|..-|+.+-++.
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555544
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.65 E-value=0.37 Score=30.51 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
++..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999998844
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.62 E-value=33 Score=40.26 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=12.3
Q ss_pred HHHHHHHhCC--CcHHHHHHHHHHh
Q 044169 391 AQIAGFFRNQ--KTEEAIEAFSQMV 413 (742)
Q Consensus 391 ~li~~~~~~g--~~~~A~~~~~~m~ 413 (742)
.+|.+|++.+ ..++|+....+.+
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4555566555 4555555555544
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.51 E-value=4.5 Score=35.06 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTN---STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR 570 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 570 (742)
.....+.|++++|.+.|+.+... .+... ..-..++.++.+.+++++|...+++.++-+.-.|++. |.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHH
Confidence 34445667777777777777664 22222 3455566677777777777777777766544444432 3333333332
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 571 AGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
-...+.++.-+- ..+.| .+....|...|+.+++..|++.
T Consensus 95 ~~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 222222111111 11111 1224578888899999999654
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.46 E-value=16 Score=36.38 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCCHH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--CchHHHHHHHH
Q 044169 423 TYSSILKACSLLPSLA---TCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-A--DVVSWNSMIKA 496 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~---~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 496 (742)
++..++.++...+..+ +|..+.+.+.... +..+.++..-++.+.+.++.+++.+++.+|.. . ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4455555665555443 3334444443321 22233444445555556666666666666651 1 22344444443
Q ss_pred HHH--cCCHHHHHHHHHHHHHcCCCCCH
Q 044169 497 YSQ--NGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 497 ~~~--~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
+.. ......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 311 12234455555554443344443
No 275
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.44 E-value=0.055 Score=47.85 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=67.3
Q ss_pred HHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHH
Q 044169 122 EVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQ 201 (742)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 201 (742)
.+++.+.+.+.+.....+++.+.+.+...+...++.++..|++.++.+...+.++.... .-...+++.+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888999998877667899999999999999988999988884433 444667788888888888
Q ss_pred HHHHHHHchh
Q 044169 202 AFSFFLKLDG 211 (742)
Q Consensus 202 A~~~~~~m~~ 211 (742)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888877643
No 276
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.34 E-value=29 Score=39.07 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=42.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSK-FESNVHVGSSLIEAYNK--- 468 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~~--- 468 (742)
...+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3456668999999998877 3345667777777766654433322222 2121110 01112456677888876
Q ss_pred cCCHHHHHHHHHhcC
Q 044169 469 CGSWEDAERVFSQLT 483 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~ 483 (742)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 457788888877665
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.23 E-value=18 Score=36.40 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=26.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEE----AHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
++...|.+..|.+..++..+-.-..-|. ....++.|.|...|+.|.|..-++.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 4555555555555555543321111122 2344566666666666666655543
No 278
>PRK09687 putative lyase; Provisional
Probab=91.18 E-value=17 Score=36.15 Aligned_cols=30 Identities=3% Similarity=0.077 Sum_probs=14.2
Q ss_pred CCChhhHHHHHHHHHhCCCc----HHHHHHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKT----EEAIEAFSQM 412 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 412 (742)
.+|...-...+.++.+.|+. .+++..+..+
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 34444444445555555542 3455555544
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.70 E-value=8.5 Score=32.61 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF 452 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~ 452 (742)
.-....+..+...|+-+.--+++.++.+. -.+++.....+..+|.+.|+..++.+++..+-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33445556666677766666666666543 256666666777777777777777777776666653
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.27 E-value=25 Score=36.42 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=78.1
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCcHHH
Q 044169 485 ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP---TNSTFLAVLSACSHSGLVQDGQKVFESMVKE-YGILPEEAH 560 (742)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 560 (742)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344577778888888888888888888877643111 2223333344555667778888877777651 111101111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 561 YSCMVDLLGRAGKLEIALIF-ISNLPIKPTAPIWRPLFAACRCH------SDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
...+...+.. ..+..... ........-...+..+...+... ++.+.+...|..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000012222223333333 778899999999999999888888887776
Q ss_pred HHhc
Q 044169 634 YAEA 637 (742)
Q Consensus 634 y~~~ 637 (742)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.40 E-value=19 Score=37.24 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDP----DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
....+|..+...+++.|+++.|...+.++...++ ..+.+...-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3466788999999999999999999999988652 2567788889999999999999999888876333
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.28 E-value=9.6 Score=38.19 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 504 RKAIILFEKMVVEGIRPTNS--TFLAVLSACSHSGL--VQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+ .|+++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 46677888888878776653 34444443332222 4477788888855 5888887777665543
No 283
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.83 E-value=3.8 Score=36.86 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
+++|+.-+++++.++|+...++..++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3467777888888899888888888888877664
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.81 E-value=10 Score=34.10 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=81.4
Q ss_pred HHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--ChHHHHHHHhccC
Q 044169 203 FSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCG--MMEDAESVFEGLV 280 (742)
Q Consensus 203 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 280 (742)
++.++.+.+.+++|+...+..+++.+.+.|+.....++ +..++-+|.......+-.+.... -.+-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566667788899999999999999998887655444 44555555544333332222111 1334445554443
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 281 QRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 281 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677788888999999999888775322 222334456666666666655555555444
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.79 E-value=3.4 Score=40.54 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVV-----EGIRPTNSTFLA 527 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 527 (742)
..++..++..+..+|+.+.+.+.++++. +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3456678888888898888888888876 34566899999999999999999988888765 477777766554
Q ss_pred HHHH
Q 044169 528 VLSA 531 (742)
Q Consensus 528 ll~a 531 (742)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.70 E-value=3.3 Score=36.65 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=33.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...++.+.++.++..+.-+.|+.+..-..-++.+...|+|.+|..+++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666666666666666666666666666666666655443
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.53 E-value=0.84 Score=28.20 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455556666667777777777777776666
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.33 E-value=3.1 Score=36.11 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
..++.++++.+++.+.-+.|+.+..-..-++++...|+|++|.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 477888888888888888888888888888888888888888888888776553
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.17 E-value=0.9 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.091 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777788888888888888885543
No 290
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.03 E-value=52 Score=37.21 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLPIK-PTAPIW-RPLFAACRCHSDLKMAEFISKQI 616 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 616 (742)
+..-.+.++++.+...|..|+.. .+..-| -=+..+....|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333555555555555555410 111111 11233334455555555555554
No 291
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.02 E-value=90 Score=39.94 Aligned_cols=280 Identities=14% Similarity=0.127 Sum_probs=148.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHh-cCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKE-MGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP 435 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 435 (742)
+-.+...|+..+++|....+... .. .|+ ...-|.-....|++..|..-|+++.+.+ ++...+++.++......+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a-~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFA-DPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhc-Ccc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 33444477777777766665552 22 222 2234445566788888888888887764 333667777777666667
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH--HHHHHHcC--CHHHHHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSS-LIEAYNKCGSWEDAERVFSQLTAADVVSWNSM--IKAYSQNG--RARKAIILF 510 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~ 510 (742)
.++...-..+..... ..+....++. =+.+--+.++++..+.... ..+..+|... +....+.. +.-.-.+..
T Consensus 1498 ~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 766665544433322 1222222222 2344456677777666655 4555566554 22222222 211111233
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH----------hHHhcCCCCcHH------HHHHHHHHHhhcCCH
Q 044169 511 EKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFES----------MVKEYGILPEEA------HYSCMVDLLGRAGKL 574 (742)
Q Consensus 511 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~----------m~~~~~~~p~~~------~~~~l~~~~~~~g~~ 574 (742)
+.+++.-+.| +.+|+..|.+..+.++.-. .....++.++.. .|..-+..-....+.
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 3333221111 1222222221111111111 111123333222 222222211111122
Q ss_pred HHHHHHHHhC----CCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044169 575 EIALIFISNL----PIK-----PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 575 ~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 645 (742)
.+-+--+++. ..+ .-..+|......++..|.++.|....-.+.+..+ +..+...+......|+...|..
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHH
Confidence 2222112211 112 2356788899999999999999999888888774 6789999999999999999999
Q ss_pred HHHHHHhCCC
Q 044169 646 QRKLMKMKEI 655 (742)
Q Consensus 646 ~~~~m~~~~~ 655 (742)
++++..+...
T Consensus 1724 ~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1724 VLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhc
Confidence 9998886554
No 292
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.93 E-value=1.8 Score=28.83 Aligned_cols=32 Identities=22% Similarity=0.524 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
+|..+..+|.+.|++++|.++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4566677777777777777777777763 5554
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.73 E-value=4 Score=39.92 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-AA--------DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
|.+.+..+...++..-....++++++..+-++. .+ ...+|-.++. .=++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 445555666666766666778888888877765 22 2233333332 3367789999888889999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 522 NSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 522 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
..+++.+++.+.+.+++.+|.++.-.|+.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999888777755
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.46 E-value=20 Score=31.81 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=50.9
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAH-YSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a 609 (742)
-...++.+++..++..+. -+.|.... -..-...+.+.|++.+|+.+|+++. ..|..+.-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345567777777777763 34444332 2223345667788888888887765 334555556666666655444444
Q ss_pred HHHHHHHHhcCC
Q 044169 610 EFISKQILELDP 621 (742)
Q Consensus 610 ~~~~~~~~~~~p 621 (742)
....+.+++..+
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 445555666655
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.42 E-value=14 Score=33.86 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCcH----HH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS--TFLAVLSACSHSGLVQDGQKVFESMVKEYGI--LPEE----AH 560 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~----~~ 560 (742)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+......- .++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44555666666666666666666666654444442 3555566666666666666665555321111 1111 12
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
|..| .+...|++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234667777777776554
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.37 E-value=1.3 Score=27.32 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999988753
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.26 E-value=29 Score=34.87 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 044169 301 EKPLRLVCLMREDGIDPNEYTFTVALASCAS--LR----NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAK 374 (742)
Q Consensus 301 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 374 (742)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+...-.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---------------------- 136 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---------------------- 136 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc----------------------
Confidence 3456788888888888888877664433322 11 2333455555555532110
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhCCC----cHHHHHHHHHHhHcCCCCCh--HHHHHHHHHhcCCCCH--HHHHHHHHH
Q 044169 375 KQLKEMGKSASSVSWNAQIAGFFRNQK----TEEAIEAFSQMVRNDAACDE--FTYSSILKACSLLPSL--ATCEQIHSR 446 (742)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~--~~a~~i~~~ 446 (742)
. .++...+..++.. ..++ .+.+...|+.+.+.|+..+. ...+.++..+...... ..+..+++.
T Consensus 137 ------T-s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 137 ------T-SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred ------c-CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 0 2233333333332 2222 23455667777776765532 3444444444333333 366777888
Q ss_pred HHHhCCCCchhHHHHHH
Q 044169 447 IVKSKFESNVHVGSSLI 463 (742)
Q Consensus 447 ~~~~~~~~~~~~~~~li 463 (742)
+.+.|+++....|..+.
T Consensus 208 l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHcCCccccccccHHH
Confidence 88888887777665544
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.67 E-value=29 Score=32.80 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=48.9
Q ss_pred HHHHHHHHhhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhcCCCCchh-----
Q 044169 561 YSCMVDLLGRA-GKLEIALIFISNLP-----IKPTAPIWRPLFA---ACRCHSDLKMAEFISKQILELDPDDAAV----- 626 (742)
Q Consensus 561 ~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~----- 626 (742)
+-.+.+.|... .+++.|+..++... .+.+...-..++. .-...+++.+|+.+|+++....-+++-.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 33455566544 56667776666543 1122222223333 2456788999999999988765444332
Q ss_pred -HHH-HHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 627 -YVT-LSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 627 -~~~-l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
|.. -+-.+.-.++.-.+...+++-.+.
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 222 222222235555555555555443
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.55 E-value=1.5 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999988754
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.53 E-value=12 Score=40.19 Aligned_cols=149 Identities=12% Similarity=0.042 Sum_probs=103.8
Q ss_pred hcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 044169 468 KCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 468 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
-.|+++.|..++..++++ ..+.++.-+.+.|-.++|+++ .+|. .-|... .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 457788887777666532 334455566667777776654 4444 233332 45788999988866
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
+. .+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+....|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 55 245568999999999999999999998754 366777888888888766666666666555333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
--.+|...|+++++.+++.+-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 334677899999999987553
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=31 Score=32.86 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--------CCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC-CHHHHHHH
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTA--------ADV-VSWNSMIKAYSQNGRARKAIILFEKMVVEG--IRP-TNSTFLAV 528 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~t~~~l 528 (742)
.+...|.+...+++|-..|.+-.. ++. ..|-+.|-.|....++..|.+.++.--+-+ ..| +..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 344455555666665555443320 111 124444445555556666666666533221 111 22455555
Q ss_pred HHHHhccCcHHHHHHH
Q 044169 529 LSACSHSGLVQDGQKV 544 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~ 544 (742)
+.+|-. |+.+++..+
T Consensus 235 L~ayd~-gD~E~~~kv 249 (308)
T KOG1585|consen 235 LTAYDE-GDIEEIKKV 249 (308)
T ss_pred HHHhcc-CCHHHHHHH
Confidence 555533 455554444
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.32 E-value=12 Score=38.92 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=63.3
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
..+...|+++.+...+.... ......+...++....+.|.+++|....+.++..+-+++.+...-+-.-...|-++++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 34455666666666665443 2233445566666666667777777777777666555555554444444556777777
Q ss_pred HHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeC
Q 044169 644 EEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQ 676 (742)
Q Consensus 644 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~ 676 (742)
...+++...-..+.+. .|+........|-.|
T Consensus 411 ~~~wk~~~~~~~~~~~--g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 411 YHYWKRVLLLNPETQS--GWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHHHhccCChhcc--cceeeeccceeccCc
Confidence 7777776654443333 455554444444433
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.04 E-value=4 Score=40.06 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+..++..+...|+.+.+...++++++.+|-+...|..++.+|...|+...|+..++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344445555556666666666666666666666666666666666666666666655543
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.80 E-value=5 Score=36.94 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=55.7
Q ss_pred HhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CchhHHHHHHHHHhcCCHH
Q 044169 568 LGRAGKLEIALIFISNLPIKP--TAPIWRPLFAACRCHSDLKMAEFISKQILELD-PD---DAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~---~~~~~~~l~~~y~~~g~~~ 641 (742)
..+.|+ ++|.+.|-.+...| +.+.....+..|....|.+++++++-+++++. |+ |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344455 56777776665333 34445555556666888999999999999974 22 7889999999999999999
Q ss_pred HHH
Q 044169 642 DAE 644 (742)
Q Consensus 642 ~A~ 644 (742)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 873
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.38 E-value=28 Score=31.36 Aligned_cols=134 Identities=10% Similarity=0.118 Sum_probs=72.6
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCC
Q 044169 138 RYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPN 217 (742)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 217 (742)
+....+.+.+++++..++..+++.+.+.|++.....+++--.-+|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk--------------------------------- 61 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSK--------------------------------- 61 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcH---------------------------------
Confidence 34445556677788888888888888888777666655443323322
Q ss_pred hhhHHHHHHHHccCCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHh
Q 044169 218 HYTYSTMLAICGSLSAIDEGKQLHAQTMKL-QYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQ 296 (742)
Q Consensus 218 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 296 (742)
.....+-.+. +....+.++=-+|.+. + ..+..+++.+...|++-+|.++.+....-+...-..++.+-.+
T Consensus 62 --~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 62 --PLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred --HHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 2221111111 1111222222222211 1 1234556667777888888887777655555555666777777
Q ss_pred CCCcchHHHHHHHHHHC
Q 044169 297 HGDYEKPLRLVCLMRED 313 (742)
Q Consensus 297 ~g~~~~A~~~~~~m~~~ 313 (742)
.+|...-..+|+-..+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77666555555555443
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.46 E-value=3 Score=41.12 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRP-TNSTFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
..-|.+.|.+++|+..|.+... +.| |.+++..-..+|.+...+..|..=....+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4579999999999999998886 577 88999988899999888877766555543
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.29 E-value=34 Score=31.46 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=58.7
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH-----HHHHHHhhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-----CMVDLLGRAGKLEIALIFISNLPIKPTAP--IWRPLFAACRC 602 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~ 602 (742)
..+...+++++|...++.... . |....+. .|.......|.+++|+..++... .++-. ....-..++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHH
Confidence 457778888888888876643 1 2222333 34567788899999999988765 22222 22333445788
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 044169 603 HSDLKMAEFISKQILELDP 621 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p 621 (742)
.|+.++|...|+++++..+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 172 KGDKQEARAAYEKALESDA 190 (207)
T ss_pred cCchHHHHHHHHHHHHccC
Confidence 8889999999998888875
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.09 E-value=2 Score=27.84 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688899999999999999999988764
No 309
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.86 E-value=11 Score=30.14 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchh
Q 044169 132 CLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDG 211 (742)
Q Consensus 132 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (742)
..++|..|-+.+...+- ....+.-.-+..+...|++++|..+.+.++.||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 46777777777766542 2444545556677889999999999999999999999887664 66777777777777777
Q ss_pred CCCCCChhhH
Q 044169 212 IDVQPNHYTY 221 (742)
Q Consensus 212 ~~~~p~~~t~ 221 (742)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 66 4444444
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.79 E-value=16 Score=33.49 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHH
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTAAD------VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR---PTNSTFLA 527 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ 527 (742)
..+..+.+.|.+.|+.++|.+.|.++.+.. ...+-.+|......+++..+.....+....--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678888999999999999999887432 235667788888889999988888776643222 22222112
Q ss_pred HHH--HHhccCcHHHHHHHHHHhHH
Q 044169 528 VLS--ACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 528 ll~--a~~~~g~~~~a~~~~~~m~~ 550 (742)
+.. ++...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 23456788888888866643
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.61 E-value=36 Score=31.27 Aligned_cols=90 Identities=12% Similarity=-0.025 Sum_probs=66.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 564 MVDLLGRAGKLEIALIFISNLPIKPTAPIWRP-----LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+...+..+|++++|...++.....|....+.. |.+...+.|.+++|...++...+-.= .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 44678899999999999987553444344433 34456788889998888776554322 3445678899999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
+-++|+..+++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988765
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.61 E-value=82 Score=35.41 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHcc
Q 044169 152 QFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGS 230 (742)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (742)
..++..+|+.+.-.|++++|-...-.|-..+..-|-.-+..+...++...... -++......+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 35778888888889999999999888888888888888888888777654433 34443333466778888777765
No 313
>PRK10941 hypothetical protein; Provisional
Probab=83.61 E-value=8.4 Score=37.88 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.+.+-.+|.+.++++.|.++.+.++.+.|+++.-+--.+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566677888899999999999999999988888888888899999999888877766543
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.45 E-value=1.8 Score=24.89 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
.....++.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988764
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.69 E-value=3.1 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
No 316
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.62 E-value=48 Score=31.97 Aligned_cols=240 Identities=18% Similarity=0.230 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHhc-CCCCC-----hhhHHHHHHHHHhCCCcHHHHHHHHHHhHc---CC--CCChHHHHHHHHHhcCCCC
Q 044169 368 GEIWEAKKQLKEM-GKSAS-----SVSWNAQIAGFFRNQKTEEAIEAFSQMVRN---DA--ACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 368 g~~~~A~~~~~~~-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~g~ 436 (742)
.+.++|..-|+++ ...+. -.+...+|..+.+.|++++.++.+.+|..- .+ .-+....++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4566666666665 11222 223345677888888888888888877541 11 1245567777777776666
Q ss_pred HHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-------chHHHHHHHH
Q 044169 437 LATCEQIHSRIVKS-----KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--------AD-------VVSWNSMIKA 496 (742)
Q Consensus 437 ~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 496 (742)
.+.-..+++.-.+. +-..--.+-.-|...|...|++....+++.++.+ .| ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666665533221 1111123345577778888888888888877641 11 2356667888
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHhHHhcCC--CCcH---HHHHHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEG-IRPTNSTFLAVLSACS-----HSGLVQDGQKVFESMVKEYGI--LPEE---AHYSCMV 565 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~~---~~~~~l~ 565 (742)
|...++-..-..+|++.+.-. --|.+. ...+++-|. +.|.+++|..=|-+..+.+.- .|.. .-|-.|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888765421 234443 344555553 567788876544444343321 2222 2366677
Q ss_pred HHHhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044169 566 DLLGRAGK----LEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFIS 613 (742)
Q Consensus 566 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 613 (742)
.++.+.|- -.+|.- ....|.......++.+|..+ +..+-++++
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 77777762 122211 01345566677888888653 444444333
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.36 E-value=23 Score=31.74 Aligned_cols=47 Identities=13% Similarity=0.062 Sum_probs=20.5
Q ss_pred hcCChhHHHHHHccCCCCCcccHHHHHH-----HHHhCCChHHHHHHHHHch
Q 044169 164 KCGDIKSMVAVVKQMPYLDIASCNCLLA-----GYAKNALFDQAFSFFLKLD 210 (742)
Q Consensus 164 ~~g~~~~A~~~f~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~ 210 (742)
+.|..++|+.-|..+...+--+|-.|.. ...+.|+...|...|++.-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 3344555555555444433333333221 2334444555555554443
No 318
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.24 E-value=89 Score=34.79 Aligned_cols=246 Identities=12% Similarity=0.061 Sum_probs=122.1
Q ss_pred hCCCcHHHHHHHHHHhH-------cCCCCChHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 398 RNQKTEEAIEAFSQMVR-------NDAACDEFTYSSILKACSLLP-----SLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 398 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...+.+.|+.+|+.+.. .| +......+...|.+.. +.+.|..++....+.| .|+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455556666555544 33 2223333344443322 4556667776666665 3333332222222
Q ss_pred HHh-cCCHHHHHHHHHhcCCC-CchHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044169 466 YNK-CGSWEDAERVFSQLTAA-DVVSWNSMIKAYS----QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 466 ~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 539 (742)
... ..+...|.++|...... .+.+.-.+...|. ...+.+.|..++++.-+.| .|-..--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 222 23556777777666522 2222222222222 2346778888888888776 3433222233333433 5555
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLL---GR----AGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKM 608 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 608 (742)
.+.-.+..+.. .|.+--...-..+.+.. .. ..+.+.+...+.+...+.+......+...|.. ..+++.
T Consensus 415 ~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 55555544432 23322111111111111 11 22455666666666545566665566555433 236777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAG---LQADAEEQRKLMKMK 653 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---~~~~A~~~~~~m~~~ 653 (742)
+...+.++-+.. +.....++.++-..- .+..|.++++...+.
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 888777777665 666667777765421 156777777666543
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.25 E-value=3.2 Score=25.14 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=10.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q 044169 599 ACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
++.+.|+.++|...++++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444
No 320
>PRK09687 putative lyase; Provisional
Probab=81.11 E-value=62 Score=32.25 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
++..+-...+.++++.|+.+-...+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 445555556666666666433333333333333 233456666777764 577777777653 456555544454443
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.84 E-value=60 Score=31.89 Aligned_cols=58 Identities=17% Similarity=0.040 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+.....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344568899999999999999999999999999999999999999888887777664
No 322
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.37 E-value=94 Score=33.86 Aligned_cols=128 Identities=6% Similarity=-0.101 Sum_probs=83.8
Q ss_pred CccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHH-HHhhccccchHHHH
Q 044169 59 AGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEV-LSYCSREECLELGR 137 (742)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~ 137 (742)
+-..|+ .+|.-- -+....+.+...+..++..- |..+-|-.- ..-=.+.|..+.+.
T Consensus 44 ~f~~wt-~li~~~--------~~~~~~~~~r~~y~~fL~ky---------------Pl~~gyW~kfA~~E~klg~~~~s~ 99 (577)
T KOG1258|consen 44 DFDAWT-TLIQEN--------DSIEDVDALREVYDIFLSKY---------------PLCYGYWKKFADYEYKLGNAENSV 99 (577)
T ss_pred cccchH-HHHhcc--------CchhHHHHHHHHHHHHHhhC---------------ccHHHHHHHHHHHHHHhhhHHHHH
Confidence 345677 666655 45555566666777776432 444433332 22234567777888
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHh-cCChhHHHHHHccCCC------CCcccHHHHHHHHHhCCChHHHHHHHHHch
Q 044169 138 RYHALITKTAVCGDQFVTASLVNMYAK-CGDIKSMVAVVKQMPY------LDIASCNCLLAGYAKNALFDQAFSFFLKLD 210 (742)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (742)
.+|+.-+.. ++-+...|...+..+.. .|+.+..++.|+.... ....-|...|.--..++++.....+|++.+
T Consensus 100 ~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 100 KVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 888877654 56677777776665554 4677777778876543 244568888888788888888888888887
Q ss_pred h
Q 044169 211 G 211 (742)
Q Consensus 211 ~ 211 (742)
+
T Consensus 179 e 179 (577)
T KOG1258|consen 179 E 179 (577)
T ss_pred h
Confidence 6
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=79.40 E-value=1.4e+02 Score=35.42 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=25.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
+.+|...|+|++|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4455555566666555554421 110111122345555555566555555555543
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.89 E-value=3.1 Score=25.22 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++..++.+|.+.|++++|.+.++.+.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46788999999999999999999987643
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.88 E-value=16 Score=25.50 Aligned_cols=29 Identities=14% Similarity=-0.080 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
....++-++.+.|++++|.+..+.+.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 35667888999999999999999887643
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.36 E-value=43 Score=30.87 Aligned_cols=28 Identities=29% Similarity=0.172 Sum_probs=18.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
+|.+...++.|+.-|.++++.+|....+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 4556666777777777777777754433
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.80 E-value=23 Score=30.26 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHh-cCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 606 LKMAEFISKQILE-LDPD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 606 ~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.++++.+++.+.+ -.|+ .......|+-.+++.|+|++++++.+...+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555554 2232 223334444455555555555555555443
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.78 E-value=7.3 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
.+.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355578899999999999999999999876543
No 329
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.68 E-value=1e+02 Score=32.81 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=34.4
Q ss_pred ChhhHHHHHHhhccccchHHHHHHHHHHHHh-ccCCChhHHHHHHHHHHhcCChhHHHHHHccCC
Q 044169 116 DKQFVIEVLSYCSREECLELGRRYHALITKT-AVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMP 179 (742)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 179 (742)
|...|...+.-|.+.+.+.+...++..|+.. +..||.-++.+.= -|-...+++.|+.+|.+-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGL 167 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHh
Confidence 6666666666666666666666666665544 2334444433322 2223334666776666544
No 330
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.60 E-value=1e+02 Score=35.86 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 044169 370 IWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVR 414 (742)
Q Consensus 370 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 414 (742)
+++...++.+.+ -|..|+..|...|+.++|+++|.+...
T Consensus 494 vee~e~~L~k~~------~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 494 VEEIETVLKKSK------KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred hHHHHHHHHhcc------cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 444555554443 477888888888888888888888765
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.58 E-value=1e+02 Score=32.83 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=93.8
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHH
Q 044169 418 ACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMI 494 (742)
Q Consensus 418 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 494 (742)
..|.....+++..+.......-+..+-.++...| -+...+-.++.+|... ..++-..+++++. -.|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4466667777777777777777777777776654 4556666777777776 4555666666544 23333334444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTN------STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 568 (742)
.-|-+ ++.+.+..+|.+.... +-|.. ..|..+...- ..+.+....+...+.++.|...-...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 6777777777776654 23311 1233322211 3455666666666655555555555555555666
Q ss_pred hhcCCHHHHHHHHHhCC
Q 044169 569 GRAGKLEIALIFISNLP 585 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~~ 585 (742)
....++++|++++..+.
T Consensus 216 s~~eN~~eai~Ilk~il 232 (711)
T COG1747 216 SENENWTEAIRILKHIL 232 (711)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 66777777777776554
No 332
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.17 E-value=3.5 Score=25.65 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHH
Q 044169 250 LSKTAVSNALLTMYIKCGMMEDAE 273 (742)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~ 273 (742)
+.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666677777777777776664
No 333
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.09 E-value=82 Score=31.36 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=13.4
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 044169 495 KAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~ 514 (742)
..+.+.+++++|.+.|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34456778888888877443
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.89 E-value=17 Score=39.11 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=66.3
Q ss_pred HhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHH
Q 044169 365 SGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIH 444 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 444 (742)
.+.|+++.|.++..+ ..+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+.+....+-
T Consensus 648 l~lgrl~iA~~la~e---~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE---ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhcCcHHHHHHHHHh---hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 355777777776665 34566788888888888888888888877554 345666677777766655555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044169 445 SRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482 (742)
Q Consensus 445 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 482 (742)
....+.|. . |...-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 55555552 2 22333566667777777776554
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.52 E-value=71 Score=30.34 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=40.2
Q ss_pred HHHhhcCCHHHHHHHHHhCC---CCCCHHHHHH---HHHH--HH-HcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP---IKPTAPIWRP---LFAA--CR-CHSDLKMAEFISKQILELDPD--DAAVYVTLSNMY 634 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---l~~~--~~-~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y 634 (742)
..-+..|++.+|+++|++.. ...+..-|.. ++.+ |. ...|.-.+...+++..+++|. |..-+..|-.+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 33456778888998888754 2222222322 2222 33 336777888888999999986 333344444433
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.92 E-value=40 Score=27.14 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE 516 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 516 (742)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|... +.|..+.+..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 44555555555443311 222222223446778999999999998888999998777543 667777777777777776
Q ss_pred CCCCCHHHHH
Q 044169 517 GIRPTNSTFL 526 (742)
Q Consensus 517 g~~p~~~t~~ 526 (742)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 55555554
No 337
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.67 E-value=2.5e+02 Score=36.32 Aligned_cols=105 Identities=15% Similarity=0.052 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--------HHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPT--------API 592 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--------~~~ 592 (742)
.+|....+.+..+|.++.|...+-...+ .+ .| ..+--.+..+...|+...|+.++++.. ..|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e-~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKE-SR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhh-cc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 4577777777888888888777666644 12 33 344556677888888888888776532 1111 222
Q ss_pred HHHHHHH--------H-HHcC--CHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 593 WRPLFAA--------C-RCHS--DLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 593 ~~~l~~~--------~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
-+.++.. | ...+ ..+...+.|..+.+..|+....|..++
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2332222 1 1222 334566777788888886555555555
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.37 E-value=1.6 Score=38.46 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcch
Q 044169 223 TMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEK 302 (742)
Q Consensus 223 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (742)
.++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666667777778888888888776666778888888888888877888777773322 333445555555555555
Q ss_pred HHHHHHHH
Q 044169 303 PLRLVCLM 310 (742)
Q Consensus 303 A~~~~~~m 310 (742)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 55555443
No 339
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.02 E-value=6.6 Score=22.84 Aligned_cols=29 Identities=31% Similarity=0.147 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
|..+...+...|+++.|...++..++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555544
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.02 E-value=21 Score=28.79 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
+..+-+..+....+.|++......+.||.+.+++..|.++|+.+..+.|-. ...|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455566666666788999999999999999999999999999886544433 336665553
No 341
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.88 E-value=9.5 Score=30.28 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...++..++.+|+|...-..++..+...|++++|.+.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456677788899999999999999999999999999887777554
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.62 E-value=7.1 Score=25.16 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVV 515 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 515 (742)
+++.|...|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 566667777777777777777766553
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.02 E-value=15 Score=36.15 Aligned_cols=103 Identities=8% Similarity=0.073 Sum_probs=70.7
Q ss_pred HhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC-CCc-----ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCCh
Q 044169 145 KTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY-LDI-----ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNH 218 (742)
Q Consensus 145 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 218 (742)
..|......+...++..-....++++++..+-.+.. ++. .+-.+.++.+.+ -++++++.++..=.+.|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 344455566667777776767788888877765542 211 122233443333 3566888888888888888899
Q ss_pred hhHHHHHHHHccCCChHHHHHHHHHHHHhC
Q 044169 219 YTYSTMLAICGSLSAIDEGKQLHAQTMKLQ 248 (742)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 248 (742)
++++.+++.+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 998888888888888888888887776654
No 344
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.02 E-value=24 Score=28.14 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
.-++.+-++.+....+.|++....+.++||.+.+++..|.++|+....+.| .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335566666777777899999999999999999999999999988754333 24445655543
No 345
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.01 E-value=18 Score=34.32 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=49.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+..++...|++-++++....++...|.+..+|..-+.+.+..=+..+|..-|....+..
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33345577899999999999999999999999999999988888889988887776533
No 346
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=12 Score=35.43 Aligned_cols=79 Identities=15% Similarity=0.049 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 572 GKLEIALIFISNL-PIKPTAPI-WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 572 g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
.+++.|+.-+.+. ...|...+ |..=+-.+.+..+++.+.+-..+++++.|+.......++........+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3444444444332 24555433 333444455566666666666666666666666666666666666666666666655
Q ss_pred H
Q 044169 650 M 650 (742)
Q Consensus 650 m 650 (742)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 5
No 347
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.47 E-value=35 Score=27.78 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHch
Q 044169 131 ECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLD 210 (742)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (742)
...++|..|.+.+...+- ....+.-..+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 467889999999888763 444555556677888999999966666677889999887765 47888888888888887
Q ss_pred hCC
Q 044169 211 GID 213 (742)
Q Consensus 211 ~~~ 213 (742)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 665
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.37 E-value=67 Score=28.16 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=18.0
Q ss_pred HHhCCChHHHHHHHhccCCCC-cchHHHHHHHHHh
Q 044169 263 YIKCGMMEDAESVFEGLVQRN-VISWTAIINGFKQ 296 (742)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 296 (742)
+...|++++|.++|+++.+.. ...|..-+.++|-
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 455666666666666665543 2244444444433
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.23 E-value=12 Score=28.61 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=29.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHH
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGRAGKLEIALIF 580 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 580 (742)
.....++|+..|....+...-.|+.. ++.+++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777765433333332 566777777777777776655
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.97 E-value=17 Score=33.87 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 561 YSCMVDLLGRAGKLEIALIFISN-LPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.+..+..+.+.+.+++|+...+. ...+| |...-..++..++-.|++++|..-++.+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677888889999888765 44555 566677788889999999999999999999988643
No 351
>PRK12798 chemotaxis protein; Reviewed
Probab=71.80 E-value=1.3e+02 Score=31.35 Aligned_cols=179 Identities=13% Similarity=0.206 Sum_probs=111.2
Q ss_pred cCCHHHHHHHHHhcC----CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCcHH
Q 044169 469 CGSWEDAERVFSQLT----AADVVSWNSMIKAYS-QNGRARKAIILFEKMVVEGIRPTNST----FLAVLSACSHSGLVQ 539 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~ 539 (742)
.|+-++|.+.+..+. .+....+-.|+.+-. ...++.+|+++|+..+- .-|.... ...-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 588888888888886 334556777776544 45688899999998776 3565432 333344567888888
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHH-HHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYS-CMVDLLGRAG---KLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQ 615 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 615 (742)
++..+-....+++...|=...|. .++..+.+.+ +.+.-..++..|.-.-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88877777666555555433332 2333333333 3444455566665222356777778888889999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHH-----hcCCHHHHHHHHHHH
Q 044169 616 ILELDPDDAAVYVTLSNMYA-----EAGLQADAEEQRKLM 650 (742)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~y~-----~~g~~~~A~~~~~~m 650 (742)
+..+... ...-...+..|. -..+++++.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9887532 222223333332 234466665555544
No 352
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.65 E-value=2.3e+02 Score=33.93 Aligned_cols=183 Identities=10% Similarity=-0.010 Sum_probs=79.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..+. -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 3444444444444433211 11233344445555555555555555443321 11222 2344444444444554
Q ss_pred ccCcHHH-HHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044169 534 HSGLVQD-GQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 534 ~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 612 (742)
..+..+. +...+..+.+ .+|...-...+.++.+.|..+.+...+......++..+-...+.++...+.. ++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHH
Confidence 4443221 2333333332 2455555566666666665544433333333345555555555555555432 33333
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 613 SKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+..+++ +| +..+-...+.++.+.+.-.++...+....
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 333332 23 44444444555544322234444444333
No 353
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.57 E-value=2.5 Score=41.92 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 044169 570 RAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
..|.+++|++.|.... ..| ....+..-.+.+.+.+....|++-+..+++++|+...-|-.-+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4566778887776543 333 34455555566777788888888899999999988888888888888899999999999
Q ss_pred HHHHhCCCCCCC
Q 044169 648 KLMKMKEISKEP 659 (742)
Q Consensus 648 ~~m~~~~~~~~~ 659 (742)
....+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888887775543
No 354
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.59 E-value=28 Score=27.77 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 302 KPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 302 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
++.+-++.+....+.|++......+++|.+.+++..|.++++-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556667777778889999999999999999999999999887763
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.88 E-value=39 Score=31.29 Aligned_cols=72 Identities=8% Similarity=-0.041 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY--GILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
.|.+.|-++...+.--+......+...|. ..+.++++.++-...+-. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555443333333333333333 345555555555554321 1134455555555555555555554
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.49 E-value=9.7 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 628 VTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 628 ~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
..|+.+|...|+.+.|+++++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999888544
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.42 E-value=2e+02 Score=32.48 Aligned_cols=47 Identities=15% Similarity=0.059 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccC
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL 231 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 231 (742)
...| .+|--+.+.|++++|.++....... .......|...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445 5677788999999999998666543 455667778888888764
No 358
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.56 E-value=62 Score=29.42 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISK 657 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 657 (742)
+++|...|+++.+.+|++.. |..-..+. .+|-++..++.+.++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL-YRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-HHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcHH-HHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 45788888888889995544 44333333 35677777776666533
No 359
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.54 E-value=33 Score=32.50 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCHH-------HHHHHHHHHHhcC--CC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 592 IWRPLFAACRCHSDLK-------MAEFISKQILELD--PD----DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+.-+.+.|+..|+.+ .|.+.|+++.+.. |. +......++.++.+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444555566666644 4555555555532 21 34577789999999999999999999988544
No 360
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.21 E-value=10 Score=39.72 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=64.5
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP-IKPTAPIW-RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
+-+...++++.|..++.+.. ..|+-..| ..-..++.+.+++..|..-+.++++++|.....|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 34455667777777777653 56654443 33336788888888999999999999998888888888888888999888
Q ss_pred HHHHHHHH
Q 044169 644 EEQRKLMK 651 (742)
Q Consensus 644 ~~~~~~m~ 651 (742)
...|+...
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 88886654
No 361
>PRK10941 hypothetical protein; Provisional
Probab=66.78 E-value=45 Score=32.88 Aligned_cols=67 Identities=16% Similarity=0.015 Sum_probs=53.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 562 SCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
+.+-.+|.+.++++.|+...+.+. ..| ++.-|.--.-.|.+.|.+..|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 456677888999999999888764 455 4666777777899999999999999999999998876543
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.11 E-value=12 Score=21.52 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.++..++..|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999987764
No 363
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.95 E-value=42 Score=27.15 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 584 LPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 584 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
+-.-|.+.+..+.+.+|++.+|+..|.++++-+...-.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 335688889999999999999999999999988776543333555543
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.89 E-value=1.1e+02 Score=30.55 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPTN---STFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
|..+-.+.|+..+|.+.|+.+.+. .|-. .....++.+|.....+.+...++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444566666777666665543 2211 12334555555555555555444433
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.41 E-value=1.5e+02 Score=29.36 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
++.....|..+|.+.+|.++.++.. ..| +...|..|+..+...||--.+.+.++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4555678999999999999999865 344 778888999999999997777777776543
No 366
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.33 E-value=1.6e+02 Score=33.07 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=63.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTNST---FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
.|...+..+.|.++|++.-+ +.|+..+ +..|+.+-.+ .++...++ +. .--.|-..++|.|
T Consensus 296 ~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El----q~---------IgmkLn~LlgrKG 358 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL----QQ---------IGMKLNSLLGRKG 358 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH----HH---------HHHHHHHHhhccc
Confidence 45556667788899988877 6887754 4444443322 12222211 11 1123445678899
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 573 KLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 573 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.++.-.++++-. ..+.+-.-.+|+.+|.++.+.|.+++|.
T Consensus 359 ~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 359 ALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 888888777532 3445556678899999999999999874
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.92 E-value=2.4e+02 Score=31.39 Aligned_cols=177 Identities=8% Similarity=0.013 Sum_probs=93.6
Q ss_pred hhHHHHHHccCCCC-CcccHHHHHH----H-HHhCCChHHHHHHHHHchh-------CCCCCChhhHHHHHHHHccCC--
Q 044169 168 IKSMVAVVKQMPYL-DIASCNCLLA----G-YAKNALFDQAFSFFLKLDG-------IDVQPNHYTYSTMLAICGSLS-- 232 (742)
Q Consensus 168 ~~~A~~~f~~~~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~-- 232 (742)
...|...++..... ++..-..+.. + +...+|.+.|+..|+.+.+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45667777665543 3333222222 2 4566788999999988866 44 3334445555555432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-CCChHHHHHHHhccCCC-CcchHHHHHHHHH----hCCCcchH
Q 044169 233 ---AIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIK-CGMMEDAESVFEGLVQR-NVISWTAIINGFK----QHGDYEKP 303 (742)
Q Consensus 233 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A 303 (742)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...... .+.++-.+...|. ...+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888887777 3443333222222222 23567788888776543 2333222222222 12355677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 044169 304 LRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGM 350 (742)
Q Consensus 304 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 350 (742)
..++.+.-+.| .|....-...+..+.. +..+.+...+..+...|.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 77777777766 3332222333334444 555555555555555443
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.43 E-value=76 Score=27.78 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCChHHHHHHHhccC---------CCCcchHHHHHHHHHhCCC-cchHHHHHHHHHHCCCCCCHHHHHHHH
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLV---------QRNVISWTAIINGFKQHGD-YEKPLRLVCLMREDGIDPNEYTFTVAL 326 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 326 (742)
|.++.-....+.+.-...+++.+. ..+-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455555455555555555544441 2456678888888865555 334677888888888899999999999
Q ss_pred HHHhccC
Q 044169 327 ASCASLR 333 (742)
Q Consensus 327 ~~~~~~~ 333 (742)
.+|.+..
T Consensus 123 ~~~l~g~ 129 (145)
T PF13762_consen 123 KAALRGY 129 (145)
T ss_pred HHHHcCC
Confidence 8887653
No 369
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.04 E-value=16 Score=21.64 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 604 SDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
|+.+.+..++++++...|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888899999998888888777766543
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.22 E-value=2.8e+02 Score=31.44 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHHhcC---CCC-chhH-----HHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELD---PDD-AAVY-----VTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~---p~~-~~~~-----~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.|+..+..........+- |+. ...| ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 577666555555554432 321 1222 345556788899999988876654
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.78 E-value=88 Score=25.61 Aligned_cols=86 Identities=9% Similarity=0.069 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHh
Q 044169 334 NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMV 413 (742)
Q Consensus 334 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 413 (742)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.... .||...|-++-. .+.|-.+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~-~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHC-YPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS---GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCC-CccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 34556666666655543 233333344556778888888843333334 788888876643 47788888888888777
Q ss_pred HcCCCCChHHH
Q 044169 414 RNDAACDEFTY 424 (742)
Q Consensus 414 ~~g~~p~~~t~ 424 (742)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3444444
No 372
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.97 E-value=49 Score=33.10 Aligned_cols=88 Identities=15% Similarity=0.003 Sum_probs=69.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 563 CMVDLLGRAGKLEIALIFISNLP----IKP--TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
-=.+-|.+..++..|...|.+-. ..| +.+.|+.-..+-.-.||+..++.-..+++..+|.+...|..=+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 33456777888888888887642 233 356677777777788999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHH
Q 044169 637 AGLQADAEEQRKLM 650 (742)
Q Consensus 637 ~g~~~~A~~~~~~m 650 (742)
..++++|....+..
T Consensus 166 Le~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 166 LERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHhhh
Confidence 99988887766544
No 373
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.58 E-value=2.3e+02 Score=30.03 Aligned_cols=180 Identities=13% Similarity=0.031 Sum_probs=85.7
Q ss_pred HHHhhccccchHHHHHHHHHHHHhccCCChh--HHHHHHHHHHhcCChhHHHHHHccCCCC----CcccHHHHHHHHHhC
Q 044169 123 VLSYCSREECLELGRRYHALITKTAVCGDQF--VTASLVNMYAKCGDIKSMVAVVKQMPYL----DIASCNCLLAGYAKN 196 (742)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~ 196 (742)
.+..++..|+.+ +.+.+.+.|..++.. .....+...++.|+.+....+++.-... +..-+ +.+...+..
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHh
Confidence 344444556654 455566677554432 1223455666778888887777654321 11122 233334455
Q ss_pred CChHHHHHHHHHchhCCCCCChhh--HHHHHHHHccCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHH
Q 044169 197 ALFDQAFSFFLKLDGIDVQPNHYT--YSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTA--VSNALLTMYIKCGMMEDA 272 (742)
Q Consensus 197 g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A 272 (742)
|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.|..++.. ...+-+...+..|+.+-+
T Consensus 113 ~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv 184 (413)
T PHA02875 113 KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLIIAMAKGDIAIC 184 (413)
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 6543 4444445555554322 123344444566665544433 444333221 112333344556776666
Q ss_pred HHHHhccCCCCcch---HHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCH
Q 044169 273 ESVFEGLVQRNVIS---WTAIINGFKQHGDYEKPLRLVCLMREDGIDPNE 319 (742)
Q Consensus 273 ~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 319 (742)
..+++.-..++... ..+.+...+..|+. ++.+.+.+.|..++.
T Consensus 185 ~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 185 KMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred HHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 66665544433221 12333333444443 344455556665553
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.64 E-value=75 Score=33.42 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=80.3
Q ss_pred HhcCCHHHHH-HHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044169 467 NKCGSWEDAE-RVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 467 ~~~g~~~~A~-~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
...|++..|- ++|.-+. +.+++........+...|+++.+...+...... +.....+...+++...+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3457766554 4444443 223333222333456778999998888776654 45566788888888888999999988
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAA 599 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 599 (742)
.-..|..+ .+ .+.+....-...--..|-++++...+++.. .+|....|..+++.
T Consensus 379 ~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 379 TAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 88877642 22 233333322333345577888888888754 34455556666665
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.47 E-value=1.6e+02 Score=30.84 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=30.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNS--TFLAVLSACS--HSGLVQDGQKVFESMVK 550 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 550 (742)
...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3567777777777777765 444443 3344444443 34556677777776644
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.34 E-value=1.8e+02 Score=28.51 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=55.4
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChh-HHHHHHHHHHHh---CC--CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCC
Q 044169 311 REDGIDPNEYTFTVALASCASLRNSH-MGYMFHAQVIKR---GM--ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSA 384 (742)
Q Consensus 311 ~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~i~~~~~~~---g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 384 (742)
.+.++++|......++..+...+.-+ .-..+.+.++++ |- ..++.....+...|.+.|++.+|+..|-.-. .+
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~ 119 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DP 119 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-Ch
Confidence 33455555555555554444332211 222333333332 21 2356677778888888888888887776543 33
Q ss_pred ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 044169 385 SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVK 449 (742)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 449 (742)
+...+..++..+...|...++ |...-..++ -|...++...|...+....+
T Consensus 120 ~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 120 SAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 333332233333333333332 111112222 34455677777766655443
No 377
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.17 E-value=1.2e+02 Score=31.44 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CC------------------CCcHHHHHHH---HHHHhhcCCH
Q 044169 522 NSTFLAVLSACSHSGLVQDGQKVFESMVKEY------GI------------------LPEEAHYSCM---VDLLGRAGKL 574 (742)
Q Consensus 522 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~------------------~p~~~~~~~l---~~~~~~~g~~ 574 (742)
..|+..+-..|...|+.+.|.+++++..=.. .+ .-|...|-++ +..+.+.|.+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 3567777778889999888888777663110 11 1133334433 4567778888
Q ss_pred HHHHHHHHhCC-CCC--CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHhcCCH
Q 044169 575 EIALIFISNLP-IKP--TAPIWRPLFAAC-RCHSDLKMAEFISKQILELDPDD-----AAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p--~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~y~~~g~~ 640 (742)
..|+++.+-+. ..| |+......|..| .+.++++--+++++........+ |..-.+.+-++...++-
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 88887766542 233 455555566654 35666766677766655532212 34556667777777777
No 378
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.60 E-value=1.3e+02 Score=26.42 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---------CCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLT---------AADVVSWNSMIKAYSQNGR-ARKAIILFEKMVVEGIRPTNSTFLAV 528 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 528 (742)
.++++.-...-+++.....+++.+. ..+-.+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4445544444455555444444442 2244456666666644443 22445566666665666666666666
Q ss_pred HHHHhc
Q 044169 529 LSACSH 534 (742)
Q Consensus 529 l~a~~~ 534 (742)
+.+|.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 666654
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.26 E-value=24 Score=23.55 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=15.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVE 516 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~ 516 (742)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456666666777777666666653
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.59 E-value=2e+02 Score=30.44 Aligned_cols=136 Identities=10% Similarity=0.005 Sum_probs=64.3
Q ss_pred HHHHHHHhccCCChhH--HHHHHHHHHhcCChhHHHHHHccCCCCCcc--cHHHHHHHHHhCCChHHHHHHHHHchhCCC
Q 044169 139 YHALITKTAVCGDQFV--TASLVNMYAKCGDIKSMVAVVKQMPYLDIA--SCNCLLAGYAKNALFDQAFSFFLKLDGIDV 214 (742)
Q Consensus 139 ~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 214 (742)
+.+.+++.|..++... ....+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..+++.-....-
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 96 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccc
Confidence 4455556776665432 344556666778877666666543322221 112334455667777665555543211100
Q ss_pred CCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHhcc
Q 044169 215 QPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAV--SNALLTMYIKCGMMEDAESVFEGL 279 (742)
Q Consensus 215 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 279 (742)
..+..- .+.+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 97 ~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 97 VFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred cccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 011111 12233334455554 3344445555444321 123344455667766666665543
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.11 E-value=3.4e+02 Score=30.88 Aligned_cols=243 Identities=10% Similarity=-0.026 Sum_probs=120.3
Q ss_pred CCCcHHHHHHHHHHhHcC-CCCCh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044169 399 NQKTEEAIEAFSQMVRND-AACDE--FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 475 (742)
..+.+.|..++....... ..+.. .....+.......+..+.+...+....... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 344577777777664432 22221 222333322233222444444444433221 2333344445555577888888
Q ss_pred HHHHHhcCC--CCchHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH---HH--HHHHHHH
Q 044169 476 ERVFSQLTA--ADVVSW-NSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLV---QD--GQKVFES 547 (742)
Q Consensus 476 ~~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~---~~--a~~~~~~ 547 (742)
...+..|.. .+..-| -=+..++...|+.++|...|+++.. .. +|..++.+-. .|.. .. .-..-..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa~~-Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAAQR-LGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHHHH-cCCCCCCCCCCCCchhhh
Confidence 888877762 111111 2245565667888888888887642 12 2333332211 1110 00 0000000
Q ss_pred hHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCc
Q 044169 548 MVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELD---PDDA 624 (742)
Q Consensus 548 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~ 624 (742)
+ .-.| -..-+..+...|+..+|...+..+....+......+.......|.++.++.........+ -.-|
T Consensus 405 ~----~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp 476 (644)
T PRK11619 405 L----TQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP 476 (644)
T ss_pred h----ccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC
Confidence 0 0001 112345666778888888888765534555566666666778888888887776543211 0123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKE 658 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 658 (742)
..|......+.+.-..+.+.-.--...+.++.+.
T Consensus 477 ~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 477 LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 3466666666665566655432222235555443
No 382
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.80 E-value=2.8e+02 Score=29.83 Aligned_cols=159 Identities=13% Similarity=0.175 Sum_probs=92.7
Q ss_pred ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044169 385 SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIE 464 (742)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 464 (742)
|....-+++..+.++-...-...+..+|..-| -+...|..++..|... ..+.-..+++++.+..+ .|...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33344555566666666666666666666543 3445566666666555 33445555665555532 23444445555
Q ss_pred HHHhcCCHHHHHHHHHhcCC------CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc
Q 044169 465 AYNKCGSWEDAERVFSQLTA------ADV---VSWNSMIKAYSQNGRARKAIILFEKMVVE-GIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~ 534 (742)
.|-+ ++.+.+...|.++.. .+. ..|.-|...- ..+.+..+.+..+.... |..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 666666666666541 111 1455544321 24566666666666542 444444566667778899
Q ss_pred cCcHHHHHHHHHHhHH
Q 044169 535 SGLVQDGQKVFESMVK 550 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~ 550 (742)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 9999999999998876
No 383
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.46 E-value=1.3e+02 Score=32.74 Aligned_cols=127 Identities=14% Similarity=0.198 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 460 SSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSM---IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 460 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
..++.-|.+.+++++|..++..|. ......|.+| ...+.+..--++....++.+...=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 356778999999999999999987 2223333333 33334443334444444444433222222111111111111
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
.-.+-|++ ...-+.|.+++++|..+--.+. +...+.-+-......|+.+.|.
T Consensus 492 -~V~~~aRR--------------------fFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARR--------------------FFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHH--------------------HHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 01112222 3334456677888877766655 3334444444445556555553
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.32 E-value=3.6e+02 Score=30.55 Aligned_cols=186 Identities=9% Similarity=0.036 Sum_probs=99.1
Q ss_pred ChhhHHHHHHhhccccchHHHHHHHHHHHH-hccCC--ChhHHHHHHHHHH-hcCChhHHHHHHccCC---CC-Ccc---
Q 044169 116 DKQFVIEVLSYCSREECLELGRRYHALITK-TAVCG--DQFVTASLVNMYA-KCGDIKSMVAVVKQMP---YL-DIA--- 184 (742)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~--~~~~~~~li~~~~-~~g~~~~A~~~f~~~~---~~-~~~--- 184 (742)
+...|..+|.. |.+.++.+.+ ..+.| +..++-.+.+.|. ...+++.|+..+++.. ++ +..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44455555543 3455555553 22333 2346667777777 5688999999888652 12 111
Q ss_pred --cHHHHHHHHHhCCChHHHHHHHHHchhCC----CCCChhhHHHH-HHHHccCCChHHHHHHHHHHHHhC---CCCChh
Q 044169 185 --SCNCLLAGYAKNALFDQAFSFFLKLDGID----VQPNHYTYSTM-LAICGSLSAIDEGKQLHAQTMKLQ---YLSKTA 254 (742)
Q Consensus 185 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 254 (742)
+-..++..+.+.+... |+...++..+.- ..+-...|..+ +..+...++...|.+.++.....- ..+-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234556666666655 888887765431 11222223333 222223378888888888776543 233444
Q ss_pred HHHHHHHHHH--hCCChHHHHHHHhcc----CC---------CCcchHHHHHHH--HHhCCCcchHHHHHHHHH
Q 044169 255 VSNALLTMYI--KCGMMEDAESVFEGL----VQ---------RNVISWTAIING--FKQHGDYEKPLRLVCLMR 311 (742)
Q Consensus 255 ~~~~li~~~~--~~g~~~~A~~~~~~~----~~---------~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 311 (742)
+.-.++.+.. +.+..+++.+..+++ .. |-..+|..+++. +...|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433 345455555555444 10 123456666544 445666666666655553
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.42 E-value=1.1e+02 Score=30.10 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=41.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-----
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYN----- 467 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~----- 467 (742)
|.+++..+++.+++...-+--+.--+......-.-|-.|++.+....+.++-..-....-.-+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566666666666665544332211111122222333345566666666655554444322222333555554443
Q ss_pred hcCCHHHHHHHH
Q 044169 468 KCGSWEDAERVF 479 (742)
Q Consensus 468 ~~g~~~~A~~~~ 479 (742)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.84 E-value=72 Score=27.85 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 044169 574 LEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 574 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 642 (742)
-+.|.++.+-|. ...............|++.-|.++.+.++..+|+|...-...+++|...|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 355666666665 334444555567789999999999999999999999999999988877765443
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.60 E-value=42 Score=25.70 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=33.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
...+.++|+..|+..++.-..|.. .++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888775333332 46777788888888888777653
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.86 E-value=1.6e+02 Score=29.01 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh--
Q 044169 494 IKAYSQNGRARKAIILFEKMVVE--GIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG-- 569 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-- 569 (742)
|++++..+++.+++...-+--+. .++|. ....-|-.|++.+....+.++-....++-+ .-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 66777788888777655443321 13333 344444557788888888887777765322 122233666666554
Q ss_pred ---hcCCHHHHHHHHHh
Q 044169 570 ---RAGKLEIALIFISN 583 (742)
Q Consensus 570 ---~~g~~~~A~~~~~~ 583 (742)
=.|.+++|.+++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 47899999988854
No 389
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=2.8e+02 Score=28.67 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=113.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH--HHHHHcCCCCCHHHHHHHHH
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILF--EKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll~ 530 (742)
..+..+...+++.|...++++.--+.. ....-++|+...|+... +-|.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 334455566666666666665433321 11223566666665432 22222223566666555554
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH------------HHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWR------------PLFA 598 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~------------~l~~ 598 (742)
.+...- +-++|-+.. -...-..|...+-.+|++++|.+++.+.+ +.||. --+.
T Consensus 115 tLr~Vt----egkIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~----VETygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 115 TLRTVT----EGKIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQ----VETYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHHHhh----cCceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcc----hhhhhhhHHHHHHHHHHHHHH
Confidence 332100 001111110 01122346678889999999999998876 22222 2345
Q ss_pred HHHHcCCHHHHHHHHHHHHhc---CCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEE
Q 044169 599 ACRCHSDLKMAEFISKQILEL---DPD----DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIY 671 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~---~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~ 671 (742)
.|...+|+-+|.-+..++... +|+ -...|..++.+..+.+.|-++.+.++.+-+.|-.+....-|+.+.-.+.
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 688889999998888877654 232 1236888999999999999999999998877765543345766654444
Q ss_pred EEEe
Q 044169 672 RFFS 675 (742)
Q Consensus 672 ~~~~ 675 (742)
.|+.
T Consensus 260 ~f~~ 263 (439)
T KOG1498|consen 260 SFCV 263 (439)
T ss_pred eEEe
Confidence 4443
No 390
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.87 E-value=42 Score=36.21 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=54.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
..|+...|...+...........+ .....|...+.+.|...+|-.++.+.. ....+.++..+..++....|.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 356666666666555322111111 123345555666666666666654432 12234455566666666667777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHH
Q 044169 612 ISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
.++.++++.|+++..-+.|..+-
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHH
Confidence 77777777776666665555443
No 391
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.73 E-value=2.1e+02 Score=27.40 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 044169 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS 523 (742)
Q Consensus 476 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 523 (742)
+.+|+-...|.+.....++..+. .+++++|.+++.++.+.|+.|...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 34444445666766666666654 467889999999988888888663
No 392
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=50.55 E-value=3.4e+02 Score=28.85 Aligned_cols=46 Identities=11% Similarity=-0.011 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHh
Q 044169 150 GDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAK 195 (742)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 195 (742)
++..+.....+++++.+..+....+.......+...-...+.++..
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 4444555666666665555555544444444444333334444443
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.32 E-value=58 Score=30.28 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 587 KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
.|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555555555
No 394
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.26 E-value=36 Score=32.11 Aligned_cols=53 Identities=25% Similarity=0.188 Sum_probs=33.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+|.+.+.+++.+++++-|+....|..++..-.++|+++.|.+.+++..+.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44556666666666666666666666666666666666666666666655443
No 395
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.15 E-value=58 Score=20.58 Aligned_cols=28 Identities=14% Similarity=-0.034 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHhcCC
Q 044169 594 RPLFAACRCHSDLKMAEFISK--QILELDP 621 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~--~~~~~~p 621 (742)
-.+...+...|++++|+.+++ -+..++|
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344444555555555555522 4444444
No 396
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.96 E-value=2.5e+02 Score=27.15 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=80.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH-SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
++..+-+.|+++++...++++...+...+..--+.+-.+|-. .|....+++++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 556667788888888888888877655555545544444422 34445555555555432221111 1222222222111
Q ss_pred ------CCHHHHHHHHHhCCC----CCCHHH-HHHHHHHH----HH-------cCCHHHHHHHHHHHHh-----cCCCCc
Q 044169 572 ------GKLEIALIFISNLPI----KPTAPI-WRPLFAAC----RC-------HSDLKMAEFISKQILE-----LDPDDA 624 (742)
Q Consensus 572 ------g~~~~A~~~~~~~~~----~p~~~~-~~~l~~~~----~~-------~g~~~~a~~~~~~~~~-----~~p~~~ 624 (742)
.--.+.+.+++.... .+...+ |.-+-+-| +. ..-.+.|.+.|+.+.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 112345555555331 111111 22211111 11 1124667777777765 467666
Q ss_pred hhHHHHH----HHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 625 AVYVTLS----NMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 625 ~~~~~l~----~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
.-+.... -.|--.|+.++|.++-+..-+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5433322 345668999999998887765443
No 397
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.96 E-value=2.9e+02 Score=27.97 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHHhHHhcCC---CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044169 536 GLVQDGQKVFESMVKEYGI---LPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 536 g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 612 (742)
+-.++|.+.|+.......- ..+...-..+.....+.|..++-..+++.....++...-..++.+.....+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467888888888763111 3455666677777888888776666666555556778888999999889999999999
Q ss_pred HHHHHhc
Q 044169 613 SKQILEL 619 (742)
Q Consensus 613 ~~~~~~~ 619 (742)
++.++.-
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9999884
No 398
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=49.96 E-value=2.3e+02 Score=26.76 Aligned_cols=176 Identities=12% Similarity=0.041 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch-HHHHHHH--HHHHcCCHHHHHHHH
Q 044169 435 PSLATCEQIHSRIVKSKFESN-VHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV-SWNSMIK--AYSQNGRARKAIILF 510 (742)
Q Consensus 435 g~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~ 510 (742)
|-...|+-=|..... +.|+ +.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.-.|+++-|.+-+
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 333444433443333 3555 578888888888899999999999988755543 2333322 233467888888777
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH-HHHHhhcCCHHHHHHHHHhCCCC
Q 044169 511 EKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM-VDLLGRAGKLEIALIFISNLPIK 587 (742)
Q Consensus 511 ~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 587 (742)
.+.-+.. +.|+ ..|..+. ...-++.+|..-+.+--+ + .|..-|... +..|.-.=..+.+.+-...-...
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~ 228 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATD 228 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence 7666542 2222 2233222 223355666544332212 2 343444332 23332222222233222222110
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 588 ------PTAPIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 588 ------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.-..+|--|..-+...|+.++|..+|+.++..+
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 113345556666778889999998888887754
No 399
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=49.51 E-value=2.8e+02 Score=27.57 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 519 RPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 519 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
.++..+...++..++..++|.+-.++++.-....+...|...|..+++.....|+..-..++++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3444444444444444455544444444433221223344444444444444444444444443
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.86 E-value=57 Score=26.02 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=36.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC----C-----chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 600 CRCHSDLKMAEFISKQILELDPD----D-----AAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..+.||+..|.+.+.+..+.... . ..+...++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567777776666666553211 1 23456678888999999999999888764
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.30 E-value=72 Score=33.44 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
.-.|++..+-.|++..|+++++.+...... .+. ..-+-...++..++-+|.-.++|
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~-l~~-----------------------~V~~~~is~~YyvGFaylMlrRY 180 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKG-LYT-----------------------KVPACHISTYYYVGFAYLMLRRY 180 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccch-hhc-----------------------cCcchheehHHHHHHHHHHHHHH
Confidence 345667777788888888887766532211 000 11122667788888888888888
Q ss_pred HHHHHHHHHHH
Q 044169 641 ADAEEQRKLMK 651 (742)
Q Consensus 641 ~~A~~~~~~m~ 651 (742)
.+|.+.|..+.
T Consensus 181 ~DAir~f~~iL 191 (404)
T PF10255_consen 181 ADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 402
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.18 E-value=2.1e+02 Score=25.91 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=67.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH--HHHHhhcCCH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM--VDLLGRAGKL 574 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l--~~~~~~~g~~ 574 (742)
.+.+..++|+.-|..+.+.|...=++ .-..........|+-..|...|+++-++..++.-..-...| .-++...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45667777777777777766443322 12223344566777778888887775543222111111111 1244566777
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 575 EIALIFISNLPIKPT---APIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 575 ~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
++...-.+-+....+ ...-..|.-+-.+.|++..|.+.|+.+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 776666665542222 22344555566677777777777777665
No 403
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.81 E-value=3.8e+02 Score=28.70 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=35.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+.++.+..+...+..-.+.+....-+.+.....-+..+.-.|++.+|.+++...
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s 266 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS 266 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 344445555555555444444444456777777888999999999998877543
No 404
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=47.72 E-value=3.5e+02 Score=28.18 Aligned_cols=53 Identities=15% Similarity=0.018 Sum_probs=23.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS-HSGLVQDGQKVFES 547 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~ 547 (742)
..+.+.|.+..|+++.+-+......-|+.....+|+.|+ +.++++--+++.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 344555555555555555554322223333333444332 33444444444443
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.27 E-value=2.9e+02 Score=27.21 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=74.3
Q ss_pred HHHHHhCCChHHHHHHHHHchhCCCCCChhh-------HHHHHHHHccCCChHHHHHHHHHHH----HhCCCCChhHHHH
Q 044169 190 LAGYAKNALFDQAFSFFLKLDGIDVQPNHYT-------YSTMLAICGSLSAIDEGKQLHAQTM----KLQYLSKTAVSNA 258 (742)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 258 (742)
.+-..+.+++++|...|.+....|+..|..+ ...+...|...|+...-.+...... ...-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445677888999999999988887776654 3445667777776655444433222 1121223334455
Q ss_pred HHHHHHhC-CChHHHHHHHhccCC----CC-----cchHHHHHHHHHhCCCcchHHHHHHH----HHHCCCCCCHHHHH
Q 044169 259 LLTMYIKC-GMMEDAESVFEGLVQ----RN-----VISWTAIINGFKQHGDYEKPLRLVCL----MREDGIDPNEYTFT 323 (742)
Q Consensus 259 li~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~ 323 (742)
|+..+... ..++.-..+.....+ .+ ...-..+|..+.+.|.+.+|+.+... +++.+-+|+..+..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 55554433 234444444433321 11 11234567788888888888865543 34445555554443
No 406
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.18 E-value=5.2e+02 Score=30.06 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=107.3
Q ss_pred hCCCHHHHHHHHHhc----CCCCCh-------hhHHHHHH-HHHhCCCcHHHHHHHHHHhHc----CCCCChHHHHHHHH
Q 044169 366 GLGEIWEAKKQLKEM----GKSASS-------VSWNAQIA-GFFRNQKTEEAIEAFSQMVRN----DAACDEFTYSSILK 429 (742)
Q Consensus 366 ~~g~~~~A~~~~~~~----~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 429 (742)
...++++|..++.+. + .|+. ..|+.+-. .....|++++|.++.+..... -..+..+.+..+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 455666766666655 2 2221 23444432 233467778888777765543 12334455666666
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCCchhHHHH---H--HHHHHhcCCHH--HHHHHHHhcC-----CC-----CchHHHH
Q 044169 430 ACSLLPSLATCEQIHSRIVKSKFESNVHVGSS---L--IEAYNKCGSWE--DAERVFSQLT-----AA-----DVVSWNS 492 (742)
Q Consensus 430 ~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~---l--i~~~~~~g~~~--~A~~~~~~~~-----~~-----~~~~~~~ 492 (742)
+..-.|+++.|..+.....+..-..+...+.. + ...+...|+.. +.+..|.... +. -...+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77777888888887776655432333333322 2 22244556332 2222332221 11 1224444
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----cHHHHHHHH
Q 044169 493 MIKAYSQN-GRARKAIILFEKMVVEGIRPTNST--FLAVLSACSHSGLVQDGQKVFESMVKEYGILP----EEAHYSCMV 565 (742)
Q Consensus 493 li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~ 565 (742)
+..++.+. +...++..-++-.......|-... +..++......|++++|...++++..- ...+ +-..-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHh
Confidence 45555441 222233333333333222222222 225666777889999998888887542 2222 222222222
Q ss_pred --HHHhhcCCHHHHHHHHHh
Q 044169 566 --DLLGRAGKLEIALIFISN 583 (742)
Q Consensus 566 --~~~~~~g~~~~A~~~~~~ 583 (742)
......|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 233567788877776655
No 407
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.02 E-value=43 Score=32.90 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=30.3
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 569 GRAGKLEIALIFISNL-PIKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
.+.|+.++|..+|+.. ...|+ +....-+....-.+++.-+|.+.|-+++...|.+..++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3556666666666542 23343 333333333334445555666666666666665554433
No 408
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.36 E-value=30 Score=32.62 Aligned_cols=57 Identities=26% Similarity=0.368 Sum_probs=38.0
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 567 LLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+....|+.+.|.+++.+.. ..| ....|--+....-+.|+++.|.+.+++.++++|+|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445666677777776653 233 45567667667777777778888888877777754
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=45.80 E-value=2.7e+02 Score=26.38 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCcHHHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKE-YGILPEEAHYSCMVDL 567 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~l~~~ 567 (742)
.+..++.+.+.+...+++...++-++. +|.. .+-..++..++-.|+|++|..-++-..+- ....+....|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566777778888888888777664 4544 45666777788888888887766655320 1222334455555543
Q ss_pred HhhcCCHHHHH-HHHHhC--C--CCCCHHHHHH-HHHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 044169 568 LGRAGKLEIAL-IFISNL--P--IKPTAPIWRP-LFAACR--CHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 568 ~~~~g~~~~A~-~~~~~~--~--~~p~~~~~~~-l~~~~~--~~g~~~~a~~~~~~~~~~~p~ 622 (742)
+.+. ++|..- + .-...+.|.. ++.+.. ..|.-+....+-+..++..|.
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 2222 233321 1 1113444544 444433 333455566667777777664
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.21 E-value=4.5e+02 Score=30.90 Aligned_cols=16 Identities=6% Similarity=-0.280 Sum_probs=8.5
Q ss_pred cCCCcchHHHHHHHhh
Q 044169 81 RNGYSTRNDSFPDGFI 96 (742)
Q Consensus 81 ~~g~~~~a~~~~~~m~ 96 (742)
.+|++++|+..|.++.
T Consensus 358 ~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 358 LQKQFEEAMSLFEKSE 373 (877)
T ss_pred HhhhHHHHHHHHHhhc
Confidence 4455555555555543
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.01 E-value=1.8e+02 Score=24.76 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 608 MAEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 608 ~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
.+..+|+.+... .-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777788877764 455778899999999999999999998864
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.95 E-value=1.5e+02 Score=24.49 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=31.0
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 044169 369 EIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVR 414 (742)
Q Consensus 369 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 414 (742)
+++++++.+.+-+ -|..++..|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4555555555443 588899999999999999999998876
No 413
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.84 E-value=2.5e+02 Score=26.93 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=61.3
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 489 SWNSMIKAYS--QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 489 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
.|...+.||. .++++++|++.+-.- .+.|+.. ..++.++...|+.+.|..+++.+. ....+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 3555666654 456777777766321 1223322 236666776788888888887652 22223333333344
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 044169 567 LLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHS 604 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (742)
+ ..+|.+.||..+.+.....-....|..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 566888888888877653222446666666665443
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.72 E-value=1.2e+02 Score=23.80 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHH
Q 044169 136 GRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAF 203 (742)
Q Consensus 136 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (742)
+.++++...+.|+- +......+-.+-...|+.+.|+.+++.++ +....|...+.++-..|+-.-|-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34566666666632 22222222222235588888888888888 77888888888888887765554
No 415
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.25 E-value=2.2e+02 Score=31.00 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH------------HHHHHHHHHhccCcHHHHHHHHHHhHHh--------------
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNS------------TFLAVLSACSHSGLVQDGQKVFESMVKE-------------- 551 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~------------t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------------- 551 (742)
.....+++|...|.-.+.. ..|+.+ +...+...|..+|+.+.|..+.++.+=.
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3455677787777776664 445432 3444455677788888777777664310
Q ss_pred -----cCCCCcHHHHHHH---HHHHhhcCCHHHHHHHHHhCC-CCC--CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 044169 552 -----YGILPEEAHYSCM---VDLLGRAGKLEIALIFISNLP-IKP--TAPIWRPLFAACR-CHSDLKMAEFISKQILEL 619 (742)
Q Consensus 552 -----~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 619 (742)
+...-+...|-+| +.-+.+.|.+..|.++.+-+. ..| |+.....+|..|+ +..+++--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 1111223334333 245567777777777665542 333 5666666777654 556666666666665443
Q ss_pred C----CCCchhHHHHHHHHHhcCC
Q 044169 620 D----PDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 620 ~----p~~~~~~~~l~~~y~~~g~ 639 (742)
+ -.+-..-..|+..|.+...
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCC
Confidence 3 2344444555555555544
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.21 E-value=85 Score=29.15 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 553 GILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
...|+..+|..++.++...|+.++|.+...++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444455555555555554444443
No 417
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.03 E-value=4.7e+02 Score=28.70 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhc--CCCCcHHHHHHHHHHHhh
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS-HSGLVQDGQKVFESMVKEY--GILPEEAHYSCMVDLLGR 570 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~l~~~~~~ 570 (742)
|..+.+.|.+..|+++.+-+.+....-|+.....+|+.|+ ++.+++-.+++++...... ..-|+...-.+|+..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4455677888888887777776433334556666666554 4556666666666653322 234555444456666655
Q ss_pred cCC
Q 044169 571 AGK 573 (742)
Q Consensus 571 ~g~ 573 (742)
...
T Consensus 429 ~~~ 431 (665)
T KOG2422|consen 429 KNE 431 (665)
T ss_pred cCC
Confidence 554
No 418
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.96 E-value=4e+02 Score=27.83 Aligned_cols=24 Identities=8% Similarity=-0.056 Sum_probs=11.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
.|+|++.|...+.++.|.++..+.
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcc
Confidence 344444444445555555554444
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.22 E-value=1.4e+02 Score=25.28 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
+..+-+.....-.+.|++.....-++||.+.+++..|.++|+-+.- ...+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 3445555666667899999999999999999999999999988854 3434444565554
No 420
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=42.59 E-value=3.9e+02 Score=27.31 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=42.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARK-AIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQD 540 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 540 (742)
+.+.++|.++.+.+..+-+.+..-......++..++-...-.+. +..+++++... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 44555555555555555444443333334444444433332222 23333333332 777777777777776655555
Q ss_pred HHHHHHHhHH
Q 044169 541 GQKVFESMVK 550 (742)
Q Consensus 541 a~~~~~~m~~ 550 (742)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 4444444444
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.35 E-value=1.4e+02 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.6
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHchh
Q 044169 185 SCNCLLAGYAKNALFDQAFSFFLKLDG 211 (742)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (742)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588888888888888888888888766
No 422
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=42.08 E-value=1.6e+02 Score=28.86 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
..+-+++.+.++++.|....++.+.++|+|+.-..--+-+|.+.|-+.-|.+-++...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 3444557777788888888888888888888777777888888888887877776643
No 423
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.25 E-value=7e+02 Score=29.88 Aligned_cols=254 Identities=9% Similarity=-0.008 Sum_probs=139.2
Q ss_pred HHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 044169 274 SVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALG 353 (742)
Q Consensus 274 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 353 (742)
.+.+.+.++|...-...+..+.+.+.. ++...+....+. +|...-...+.++...+........+....+ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 444555567777777777777776653 355555555432 3433333444444443221111122222222 245
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC
Q 044169 354 DFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433 (742)
Q Consensus 354 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 433 (742)
..+-...+..+...+.- ....+...+. .+|...-...+.++.+.+..+.. .... -.++...-.....++..
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~-D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALG-DPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhc-CCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHH
Confidence 56666666666554321 1223444445 66666666666666665544321 1222 13455555556666666
Q ss_pred CCCHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 044169 434 LPSLAT-CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAE-RVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFE 511 (742)
Q Consensus 434 ~g~~~~-a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 511 (742)
.+..+. +...+..+.+ .++..+-...+..+.+.|..+.+. .+...+..++...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 554332 2333334433 456777778888888888766553 34445556676666667777777765 45666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 512 KMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 512 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
.+.+ .|+...-...+.++.+...-..+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6664 56776666667777665334566667766655
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.18 E-value=44 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 044169 493 MIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~ 514 (742)
+|.+|.+.|++++|.++.+++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444455555444444443
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.13 E-value=30 Score=29.55 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=25.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC 532 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 532 (742)
...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667889999999999999986 56666544
No 426
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.67 E-value=1.6e+02 Score=23.08 Aligned_cols=64 Identities=9% Similarity=0.151 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchH
Q 044169 238 KQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKP 303 (742)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 303 (742)
.++++.+.+.|+- +......+-.+-...|+.+.|..+++.++ +....|..++.++-..|+-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555532 22222222222224577788888888888 7777788888887777765544
No 427
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.95 E-value=1.8e+02 Score=30.78 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=29.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 581 ISNLPIKPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 581 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
|.....+|. ..+++.-+..+.+++|+..|-.+.++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 434444443 445677777888999999999999999999984
No 428
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.75 E-value=3.3e+02 Score=25.40 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNST-FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
...+.++..+...|+++.|-++|.-+.... ..|... |..=+..+.+.+.-....++ +..|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~f----------------l~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEF----------------LEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHH----------------HHHHHH
Confidence 356778888899999999999999888753 444432 33223333333332222233 344444
Q ss_pred HHhhcCCHHHHHHH------HHhCC--CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC---CCchhHHHH
Q 044169 567 LLGRAGKLEIALIF------ISNLP--IKPT---APIWRPLFAACRCHSDLKMAEFISKQILEL--DP---DDAAVYVTL 630 (742)
Q Consensus 567 ~~~~~g~~~~A~~~------~~~~~--~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p---~~~~~~~~l 630 (742)
.|.......+.... |+.-. ..|. ...|..++..-.+....+.+.++.+++-++ .| +++..|...
T Consensus 105 ~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~ 184 (199)
T PF04090_consen 105 FYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIR 184 (199)
T ss_pred HHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 44433322222111 11111 1121 112334444333444556677777877775 33 466666666
Q ss_pred HHHH
Q 044169 631 SNMY 634 (742)
Q Consensus 631 ~~~y 634 (742)
+-++
T Consensus 185 ~m~~ 188 (199)
T PF04090_consen 185 GMCH 188 (199)
T ss_pred HHHH
Confidence 5554
No 429
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.37 E-value=1.2e+02 Score=34.78 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=64.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 607 (742)
+|..+.+.|..+-|+.+.+.=.. -.+....+|+++.|++.-+++. |...|..|......+|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 34444556666666555433211 1234456788888888877765 6778888888888888888
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
-|+..|++... +..|.-+|.-.|+.++-.++.+..
T Consensus 690 IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 690 IAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 88888887654 334555666677776665554444
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.01 E-value=1.3e+02 Score=27.52 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=15.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 598 AACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 598 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
..|.+.|.+++|.+++++..+ +|++.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 346666666666666666666 55433
No 431
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=37.53 E-value=5.2e+02 Score=27.35 Aligned_cols=324 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 044169 187 NCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (742)
|-++.-|...|+..+|.+..+++ ..+......+-+++...+.-..+..+.-.+.+.+...+....+.+..++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred C--------ChHHHHHHHhccCCCCcc---------------------------hHHHHHHHHHhCCCcchHHHHHHHHH
Q 044169 267 G--------MMEDAESVFEGLVQRNVI---------------------------SWTAIINGFKQHGDYEKPLRLVCLMR 311 (742)
Q Consensus 267 g--------~~~~A~~~~~~~~~~~~~---------------------------~~~~li~~~~~~g~~~~A~~~~~~m~ 311 (742)
+ ++..|...|+.+..+++. ....+|+-|..+|+..+..+.++.+-
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcC
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-------------HHHHHHHHH
Q 044169 312 EDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGE-------------IWEAKKQLK 378 (742)
Q Consensus 312 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~-------------~~~A~~~~~ 378 (742)
.-...|-..-+.+-+..=.+...-+.|-.++..+--. +-++..+-+.+...+-...+ .--|+.+.+
T Consensus 373 ~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViD 451 (645)
T KOG0403|consen 373 LPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVID 451 (645)
T ss_pred CccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhh
Q ss_pred hcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhH
Q 044169 379 EMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHV 458 (742)
Q Consensus 379 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~ 458 (742)
.+-.+.+...+..-+..-.+....-+.-..+-.|...|-+ +++.....|--..+...-+++..
T Consensus 452 dVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeR--------llr~WGgGG~g~sVed~kdkI~~--------- 514 (645)
T KOG0403|consen 452 DVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGER--------LLRVWGGGGGGWSVEDAKDKIDM--------- 514 (645)
T ss_pred cccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccc--------hhheecCCCCcchHHHHHHHHHH---------
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAA---DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI----------------- 518 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------- 518 (742)
|+.-|.-.|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-+..+.++++.-..|+
T Consensus 515 ---LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl 591 (645)
T KOG0403|consen 515 ---LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSL 591 (645)
T ss_pred ---HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccC
Q ss_pred ------CCCH-HHHHHHHHHHhccC
Q 044169 519 ------RPTN-STFLAVLSACSHSG 536 (742)
Q Consensus 519 ------~p~~-~t~~~ll~a~~~~g 536 (742)
.|+. ..|+....-|.+.|
T Consensus 592 ~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 592 PDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred cccccCCCcHHHHHHHHHHHHHHcC
No 432
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.37 E-value=5.3e+02 Score=27.40 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHH
Q 044169 418 ACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMI 494 (742)
Q Consensus 418 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 494 (742)
..+......++..+ .|+...+..+++.+...+-..+ .+...+++.... ..+......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555555443 6788777777776654311111 222222222211 22223344455
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044169 495 KAYSQ---NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG 536 (742)
Q Consensus 495 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 536 (742)
.++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 5789999999999999998887665555555544333
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.33 E-value=1.8e+02 Score=23.17 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHcCCHHHHHHHHHHHHH----cCCCCC--H--HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 498 SQNGRARKAIILFEKMVV----EGIRPT--N--STFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~----~g~~p~--~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
.+.|++.+|.+.+.+..+ .+..+. . .....+.......|.+++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355666666555444432 221111 1 1222233345556666666666666554
No 434
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.56 E-value=1.2e+02 Score=20.58 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=22.9
Q ss_pred HHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044169 294 FKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALA 327 (742)
Q Consensus 294 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 327 (742)
..+.|-..++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777777666665554
No 435
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.40 E-value=2.2e+02 Score=22.58 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD--DAAVYVTLSNMYAEAGLQ-ADAEEQRKLM 650 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~-~~A~~~~~~m 650 (742)
|....-.+...+...|+++.|.+.+-.+++.+|+ +...-..|+.++...|.- +-+.++.+++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455556666667777777777777777666543 455666666666666663 3444444443
No 436
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.38 E-value=1.4e+02 Score=32.45 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh-cCCHHHHHHHHHhCC-CCCC--HHH
Q 044169 519 RPTNSTFLAVLSACSHS--GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR-AGKLEIALIFISNLP-IKPT--API 592 (742)
Q Consensus 519 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~-~~p~--~~~ 592 (742)
-|+..+...++.-.... ...+-|-.++..|.+ .+.|--... .+...|.| .|+...|.+.+.... .+|- .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 45665555544433221 123334445554522 222221111 23344544 688888988877643 3342 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...|.....+.|-.-.|..++.+.+.+....|-++..++++|....+.+.|++.|+...+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 455666666777777899999999998877889999999999999999999999988876553
No 437
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.33 E-value=5.5e+02 Score=27.26 Aligned_cols=80 Identities=9% Similarity=-0.021 Sum_probs=39.2
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044169 251 SKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCA 330 (742)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 330 (742)
++..+....++++.+.+..+....+..-+..++.......+.++...+. .+...+....+ .+|...-...+.+++
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG 172 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALG 172 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 4444566666666666665555555555555555544444455544331 23333333332 244444444555555
Q ss_pred ccCCh
Q 044169 331 SLRNS 335 (742)
Q Consensus 331 ~~~~~ 335 (742)
..+..
T Consensus 173 ~l~~~ 177 (410)
T TIGR02270 173 ELPRR 177 (410)
T ss_pred hhccc
Confidence 44443
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.79 E-value=60 Score=32.17 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCChhh-HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH
Q 044169 383 SASSVS-WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI 427 (742)
Q Consensus 383 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 427 (742)
.+|..+ |+..|..-.+.|++++|+.++++..+.|+.--..||..-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 455544 578899999999999999999999999877666665443
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.71 E-value=1.3e+02 Score=31.99 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=48.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.....++++.|+..+.++++++|+.+..|..-+.++.+.+++..|..=..+..+..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 34566789999999999999999999999999999999999999988776666544
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.07 E-value=75 Score=31.53 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV 528 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 528 (742)
-|+.-|..-.+.||+++|+.++++..+.|+.--..+|..-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888889999999999999999998876655665443
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.98 E-value=1.5e+02 Score=20.20 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777666665554
No 442
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.95 E-value=4.6e+02 Score=25.62 Aligned_cols=202 Identities=10% Similarity=0.117 Sum_probs=121.9
Q ss_pred CCChhhHHHHHHH-HHhCCCcHHHHHHHHHHhHcCCCCCh---HHHHHHHHHhcCCCCHHHHHHHHHHHHH---hCC--C
Q 044169 383 SASSVSWNAQIAG-FFRNQKTEEAIEAFSQMVRNDAACDE---FTYSSILKACSLLPSLATCEQIHSRIVK---SKF--E 453 (742)
Q Consensus 383 ~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~i~~~~~~---~~~--~ 453 (742)
.||+..-|..-.+ -.+...+++|+.-|.+..+..-.-.. .....++...-+.+++++....+.++.. ..+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 5665543322111 13455889999999998774322233 3455667888899999998888877643 222 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCch----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CC
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVV----SWNSMIKAYSQNGRARKAIILFEKMVVEGI----RP 520 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p 520 (742)
.+....|++++......+.+--.++++.-. ..|.. +-+-|...|...+.+.+..++++++...-- .-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 345667788887777777666665555332 22332 334567777778888888888888765411 11
Q ss_pred CH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH----HHHhhcCCHHHHH-HHHHhC
Q 044169 521 TN-------STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV----DLLGRAGKLEIAL-IFISNL 584 (742)
Q Consensus 521 ~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~-~~~~~~ 584 (742)
|. ..|..=+..|..+.+-.+-..++++......--|.+.....+- .+..+.|++++|. ++|+..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 1355556667777777777777777654444456655444332 3455677777765 444443
No 443
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.43 E-value=2.8e+02 Score=23.59 Aligned_cols=56 Identities=16% Similarity=-0.021 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWR-PLFAACRCHSDLKMAEFISKQ 615 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~ 615 (742)
+..+++.++.-.|..++|.++++.....+.-...| .++..|++..+-++..++-++
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555555666666666666555333333222 355555555555555444443
No 444
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.78 E-value=6.3e+02 Score=28.31 Aligned_cols=115 Identities=12% Similarity=0.231 Sum_probs=65.6
Q ss_pred HHHHHHHhCCChHHHHHHHhccCCC------CcchHHHHHHHHHhCCCcc------hHHHHHHHHHHCCCCCCHHHHHHH
Q 044169 258 ALLTMYIKCGMMEDAESVFEGLVQR------NVISWTAIINGFKQHGDYE------KPLRLVCLMREDGIDPNEYTFTVA 325 (742)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 325 (742)
+|..+|...|++-.+..+++..... =...||..|+...+.|.++ .|.+.+++. -+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 5666666666666666666655331 1345777777777777654 233333333 356688888888
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHH--HhCCCHHHHHHHHHhcCC
Q 044169 326 LASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMY--SGLGEIWEAKKQLKEMGK 382 (742)
Q Consensus 326 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~ 382 (742)
+.+.........+.-++...+... .|.+++.+ ...-..++..-+.+++.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s-------~ngv~di~~~~~v~s~~ev~limd~l~i 161 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRS-------ANGVIDILMHESVFSPEEVKLIMDQLNI 161 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhh-------hhhHHHHHhhhccCCHHHHHHHHHhcCC
Confidence 887666555455555555544422 12233322 233346666667777643
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.34 E-value=97 Score=22.47 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 623 DAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|..-...++.+|...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44445566777777788888877776654
No 446
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.31 E-value=2.6e+02 Score=23.80 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 584 LPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 584 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+..-|++.+...-+.+|++-+|+..|.++++-+...-+.....|-.+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33568888888999999999999999999988876654333334433
No 447
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.08 E-value=1.1e+02 Score=18.86 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 605 DLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
.++.|..+|++.+...| ++..+...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788888888888877 566665543
No 448
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.82 E-value=79 Score=31.34 Aligned_cols=77 Identities=5% Similarity=0.041 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 556 PEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRP-LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
.|+..|...+.-..+.|.+.+...++.+.. ..| |+..|-. --.-+..+++++.+..++.+.+.++|++|..|.....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 344444444444444445555555555432 233 4555644 2223567888889999999999999988887665443
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.76 E-value=5e+02 Score=26.08 Aligned_cols=73 Identities=14% Similarity=0.270 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh----------hcCCHHH
Q 044169 507 IILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG----------RAGKLEI 576 (742)
Q Consensus 507 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~----------~~g~~~~ 576 (742)
.++|+.|.+.++.|.-..|.-+.-.+++.=.+.+.+.+|+.+..+ ..-+..|+..++ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 468888888899999988877777777877888999999988653 222444444333 2567777
Q ss_pred HHHHHHhCC
Q 044169 577 ALIFISNLP 585 (742)
Q Consensus 577 A~~~~~~~~ 585 (742)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776654
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.86 E-value=1.6e+02 Score=28.61 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=8.2
Q ss_pred HHhccCcHHHHHHHHHHh
Q 044169 531 ACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m 548 (742)
-|.+.|++++|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444444
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.34 E-value=3.4e+02 Score=23.07 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 044169 505 KAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFES 547 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 547 (742)
++.++|+.|...|+--.. ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666666666666654443 3455555556666666666666643
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.06 E-value=6.7e+02 Score=26.31 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTA------ADVVSWNSMIKAYSQNGRARKAIILFEKMVV 515 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 515 (742)
..+.-+.+-|..+|+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788888899999999998888651 1223566666666677788877777777665
No 453
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.15 E-value=7.2e+02 Score=26.41 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=32.7
Q ss_pred hHHHHHHHHHh---CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC
Q 044169 388 SWNAQIAGFFR---NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP 435 (742)
Q Consensus 388 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 435 (742)
.+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555554 5789999999999999998877665555555544433
No 454
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.12 E-value=2.7e+02 Score=23.72 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 044169 506 AIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
..++|..|...|+--.. ..|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455556555554443 234444444455555555555553
No 455
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.96 E-value=5.8e+02 Score=25.28 Aligned_cols=77 Identities=18% Similarity=-0.036 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-------------
Q 044169 576 IALIFISNLPIKPTAPIWRPLFAACR----CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG------------- 638 (742)
Q Consensus 576 ~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------------- 638 (742)
.|...+.++...-+......+...|. ...|.++|...|.++.+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 45555554432223333333333332 13366777777777777665 44444555 444444
Q ss_pred --CHHHHHHHHHHHHhCCC
Q 044169 639 --LQADAEEQRKLMKMKEI 655 (742)
Q Consensus 639 --~~~~A~~~~~~m~~~~~ 655 (742)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 56666666666555443
No 456
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.48 E-value=3.6e+02 Score=22.76 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA----VYVTLSNM 633 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 633 (742)
...+..|..++.+.|++++++.--+ .|...|++-=+++.+.-. +..+-+.+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~-------------------------~aL~YFNRRGEL~qdeGklWIaaVfsra~A 109 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSAD-------------------------RALRYFNRRGELHQDEGKLWIAAVFSRAVA 109 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH-------------------------HHHHHHHHH--TTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH-------------------------HHHHHHhhccccccccchhHHHHHHHHHHH
Confidence 3345566667777777766654322 222233333334433222 23344556
Q ss_pred HHhcCCHHHHHHHHHHH
Q 044169 634 YAEAGLQADAEEQRKLM 650 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m 650 (742)
+...|+.++|.+.|+..
T Consensus 110 l~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 110 LEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHH
Confidence 77788888888887654
No 457
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.20 E-value=5.4e+02 Score=24.64 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=60.3
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044169 460 SSLIEAYN--KCGSWEDAERVFSQLTA-ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG 536 (742)
Q Consensus 460 ~~li~~~~--~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 536 (742)
..+++++. -.+++++|.+.+-.-.. ++- -.-++.++...|+.+.|+.+++.+.-..- +......++.+ ...+
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcC
Confidence 34455543 34667777776643321 111 12367777778888888888776542211 11222333333 4457
Q ss_pred cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044169 537 LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKP 588 (742)
Q Consensus 537 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 588 (742)
.+.+|..+-+..... -....+..++..+.....-....+.+-.++..+
T Consensus 155 ~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~ 202 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDE 202 (226)
T ss_pred CHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCCh
Confidence 777777766554221 113355666655554332223333344444443
No 458
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.09 E-value=4.9e+02 Score=24.14 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 044169 635 AEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~ 652 (742)
.+.|++++|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456788888888888764
No 459
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.94 E-value=76 Score=27.22 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=27.0
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhc
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCS 128 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 128 (742)
-.-|.-..|-.+|++|+..|-. || .|+.++..+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~p-------------Pd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNP-------------PD--DWDALLKEAK 139 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCC-------------Cc--cHHHHHHHhc
Confidence 4457788999999999999977 66 5788887653
No 460
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.60 E-value=6.3e+02 Score=25.19 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=46.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVVSWNSMIKAYSQNGRARKAIILFE 511 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 511 (742)
+-.++..+...+++.+++.+++.+-.++++... ..|...|..+|......|+..-..++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 346777777888888888888888888887654 3477789999999999998865544443
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.33 E-value=1e+03 Score=28.55 Aligned_cols=183 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-------CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHH-----
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLT-------AADVVSWNSMIKAYS-QNGRARKAIILFEKMVVEGIRPTNSTFLA----- 527 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----- 527 (742)
..+.-+...+++.+|..+.++-. +.|+..|-.=+..+. +-++.+---.++..+.+..+.-+...-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhCC---------------
Q 044169 528 -----VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG--KLEIALIFISNLP--------------- 585 (742)
Q Consensus 528 -----ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~--------------- 585 (742)
-.......+++......+..... ...-.......++.+|.+.+ ++++|+..+.++.
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~--~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~ 856 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALE--KPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLC 856 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhe
Q ss_pred -CCCCHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 586 -IKPTAPIWRPLFAAC----------RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 586 -~~p~~~~~~~l~~~~----------~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
..+-...|+.-++.| ..+.|..+=.-+++++.++.| ...--.+=.+.|+|++|++-+.++
T Consensus 857 fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~-----~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 857 FLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPP-----LYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCCh-----hheeeeHhhhhCCHHHHHHHHHhh
No 462
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.90 E-value=5.9e+02 Score=24.64 Aligned_cols=77 Identities=10% Similarity=0.011 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhcC--CCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCcHHHHHHHH
Q 044169 470 GSWEDAERVFSQLT--AADV-VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTF-LAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 470 g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~ 545 (742)
..++.|...+.+.. .|++ .-|+.=+..+.+..+++.+..--.+.++ +.||.+-- ..+.........+++|+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 34445555444433 4444 3455566677777777777766666665 56776543 33334455566677777777
Q ss_pred HHh
Q 044169 546 ESM 548 (742)
Q Consensus 546 ~~m 548 (742)
.+.
T Consensus 102 qra 104 (284)
T KOG4642|consen 102 QRA 104 (284)
T ss_pred HHH
Confidence 665
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.85 E-value=2.2e+02 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
...|..-|.+.|++++|.++|+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345667788888888888888765
No 464
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.71 E-value=5.4e+02 Score=24.39 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=8.9
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 044169 566 DLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~ 584 (742)
.+..|.|+.++|.+.|.++
T Consensus 173 eL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 4444444444444444443
No 465
>PF15469 Sec5: Exocyst complex component Sec5
Probab=26.41 E-value=5e+02 Score=23.69 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=14.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
-+.-|.+.|+++.+...|..+..
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 34556666777777766666643
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.39 E-value=3.3e+02 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=16.5
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 044169 566 DLLGRAGKLEIALIFISNLPIKPTAPI 592 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~p~~~~ 592 (742)
-.|.+.|.+++|.+++++.-..|+...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~ 145 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQK 145 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchh
Confidence 456677777777777776544454443
No 467
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.36 E-value=9.5e+02 Score=26.87 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.|..-+.-+...++.. ....+.+...-.-.+......++..|.+.|-.+.+..+.+.+-
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3544444444433222 4444444443333345555666667777776666666666443
No 468
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=6.8e+02 Score=24.87 Aligned_cols=96 Identities=11% Similarity=0.147 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHH-H
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMV----VEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEA-H 560 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~ 560 (742)
...|..+..-|++.++.+.+.++.++.. ..|.+.|.. +-..+.-.|....-+++-++..+.|.++ |-..+.. -
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 3467777788888888887777665543 345666652 2333333455555567777777777764 4443332 1
Q ss_pred HHHHHHHH-hhcCCHHHHHHHHHh
Q 044169 561 YSCMVDLL-GRAGKLEIALIFISN 583 (742)
Q Consensus 561 ~~~l~~~~-~~~g~~~~A~~~~~~ 583 (742)
|...-..+ ....++.+|-.++..
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 22221111 123456666666554
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.27 E-value=3.6e+02 Score=29.42 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCC-hhhH---HHHHHHHHhCCCcHHHHHHHHHHhH
Q 044169 358 TAIVDMYSGLGEIWEAKKQLKEMGKSAS-SVSW---NAQIAGFFRNQKTEEAIEAFSQMVR 414 (742)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~li~~~~~~g~~~~A~~~~~~m~~ 414 (742)
..++.-|.+.+++++|..++..|+.... ...| +.+...+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3577789999999999999999953221 2222 3334444454444455555555444
No 470
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.15 E-value=7.2e+02 Score=25.05 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT-AADVVSWNSMIKAYSQNGRARKAIILFEKMVV 515 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 515 (742)
+..-..+.....+.|..+.-..+++... ..+......++.+++...+.+...++++....
T Consensus 169 ~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 169 PDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333444444445555444444443333 22333444455555555555555555555444
No 471
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.90 E-value=4.4e+02 Score=22.49 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=30.6
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 609 AEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 609 a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
...+|..+... .-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666654 34467788888999999999999998885
No 472
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.88 E-value=1.7e+02 Score=18.84 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.+|..|+.+-...++|++|.+=|++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 468889999999999999988777654
No 473
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=24.46 E-value=7.6e+02 Score=25.12 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh---cCCHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR---AGKLEIAL 578 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~ 578 (742)
.+.-+.+++++++. .|+. ......+..+.+..+.++..+-|+++... .+-+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 34556677777665 3443 45666667777777777777777777653 22345566666654433 12344444
Q ss_pred HHHHhC-------CCC--------C--CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 579 IFISNL-------PIK--------P--TAP---IWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 579 ~~~~~~-------~~~--------p--~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
++|.+. ... + +.. ++..+.....+.|..+.|..+++.+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444322 111 1 111 22223334578999999999999999975
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.30 E-value=5.5e+02 Score=28.74 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=39.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhCCCH------HHHHHHHHhcCCCCChhhHHHHHHH
Q 044169 324 VALASCASLRNSHMGYMFHAQVIKRG--MALGDFVGTAIVDMYSGLGEI------WEAKKQLKEMGKSASSVSWNAQIAG 395 (742)
Q Consensus 324 ~ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~li~~ 395 (742)
+++.+|...|++..+.++++...... -..-...+|..|+...+.|.+ +.|.+.++.....-|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67777777777777777777666532 222234455555555555543 3344444444444455555555444
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.21 E-value=4.4e+02 Score=23.10 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044169 287 WTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCAS 331 (742)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 331 (742)
-..++..+.+.++.-.|.++++++.+.+..-+..|.-..|..+..
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 444555555555556666666666665544444444433444333
No 476
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.16 E-value=9.3e+02 Score=26.01 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHHhcCCHHHHHHHHHhcC---CC---------CchHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCHH--
Q 044169 465 AYNKCGSWEDAERVFSQLT---AA---------DVVSWNSMIKAYSQNGRARKAIILFEKMVV-------EGIRPTNS-- 523 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~-- 523 (742)
.+.-.|++.+|.+++-..- .+ .-..||.|...+.+.|.+.-+..+|.+..+ .|++|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445577777777765442 11 112456666556666666666666655543 35554331
Q ss_pred ---------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh
Q 044169 524 ---------TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG 569 (742)
Q Consensus 524 ---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 569 (742)
+|+ ..-.+.+.|++-.|.+.|.+..+ -+..++..|-.|.+++.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 222 22246677777778777777765 34455566666666553
No 477
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=3.2e+02 Score=26.98 Aligned_cols=132 Identities=7% Similarity=-0.004 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHH
Q 044169 518 IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-----IKPTAPI 592 (742)
Q Consensus 518 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~ 592 (742)
++.|...++.++.-- ..+.++--+-.++..++.|-.-....+..+.+-|+.-++.+.+.+...+.. ..-...+
T Consensus 77 ikfD~~~~n~l~kkn--eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKKN--EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHhh--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 445555566555421 112222222333333333444445667788889999999988888776532 1122233
Q ss_pred HHHHHHH---HHHcCCHHHHHHHHHHHHhcCCC--CchhHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 044169 593 WRPLFAA---CRCHSDLKMAEFISKQILELDPD--DAAVYVTL-SNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 593 ~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l-~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+-+.+.. |....-.++-.+..+.+++...+ -..-|-.. +.-+....++.+|..++....
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3333332 32333345566666666776543 11112111 222344556777777665544
No 478
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.79 E-value=3.2e+02 Score=23.09 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=38.3
Q ss_pred HcCCHHHHHHHHHHHHhc---CCC---------CchhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCCcccEE
Q 044169 602 CHSDLKMAEFISKQILEL---DPD---------DAAVYVTLSNMYAEAGLQADAEEQRKLMK-----MKEISKEPGCSWI 664 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~---~p~---------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~~s~~ 664 (742)
+.|.+++|..-+.++.+. -|. |...+..|+.++...|+|++++.--+... .-.+..+.|.-||
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 456667777766666653 122 44567788889999999988765433332 3345567777787
Q ss_pred E
Q 044169 665 E 665 (742)
Q Consensus 665 ~ 665 (742)
.
T Consensus 101 a 101 (144)
T PF12968_consen 101 A 101 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 479
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.78 E-value=1.2e+03 Score=27.26 Aligned_cols=215 Identities=15% Similarity=0.024 Sum_probs=111.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCch-------hHHHHHH-HHHHhcCCHHHHHHHHHhcC--------CCCchHHHHHHH
Q 044169 432 SLLPSLATCEQIHSRIVKSKFESNV-------HVGSSLI-EAYNKCGSWEDAERVFSQLT--------AADVVSWNSMIK 495 (742)
Q Consensus 432 ~~~g~~~~a~~i~~~~~~~~~~~~~-------~~~~~li-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 495 (742)
....++.+|..+..++...--.|+. ..++.|- ......|++++|.++-+... ...++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4456777888777766554222211 1223221 12234578888877766543 235566777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHH--HHHhccCc--HHHHHHHHHHhHHhcCC-CC----cHHHHHH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTNST---FLAVL--SACSHSGL--VQDGQKVFESMVKEYGI-LP----EEAHYSC 563 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll--~a~~~~g~--~~~a~~~~~~m~~~~~~-~p----~~~~~~~ 563 (742)
+..-.|++++|..+.++..+.--.-+... |..+. ..+..+|. +.+....|......... +| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999988877665322223222 22222 23555663 33333344333221111 11 1233444
Q ss_pred HHHHHhhcCCHHHHHH----HHHhCC-CCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchh-----H
Q 044169 564 MVDLLGRAGKLEIALI----FISNLP-IKPT--API--WRPLFAACRCHSDLKMAEFISKQILELD--PDDAAV-----Y 627 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~----~~~~~~-~~p~--~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~-----~ 627 (742)
+..++.+ ++.+.. -++--. ..|. ... +..|.......|+.+.|....+++..+. +.-... +
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4445544 333322 222111 1222 111 1245666788999999999888887753 321111 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 044169 628 VTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 628 ~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
..-.......|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222334567888888777655
No 480
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.20 E-value=9.4e+02 Score=26.97 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=60.4
Q ss_pred hhcCCHHHHHHHHHh-CC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 569 GRAGKLEIALIFISN-LP-IKPT------APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~-~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
.+..++..+.++|.. |. ...| ......+.-.|....+.+.|.++++++-+.+|.++-.-.....+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 355667777777654 32 1111 223455555667777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCC
Q 044169 641 ADAEEQRKLMKMKEI 655 (742)
Q Consensus 641 ~~A~~~~~~m~~~~~ 655 (742)
++|..........-.
T Consensus 445 e~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 445 EEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHHHHhhhc
Confidence 888887776664433
No 481
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=1.4e+03 Score=27.78 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=11.5
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 044169 465 AYNKCGSWEDAERVFSQL 482 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~ 482 (742)
+|..+|...+|.+.|.+.
T Consensus 929 ~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eeecCCchHHHHHHHHHH
Confidence 355666777777766654
No 482
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.95 E-value=9e+02 Score=25.42 Aligned_cols=62 Identities=13% Similarity=0.026 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKSKF--ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT 483 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 483 (742)
..+.-+...|...|+++.|.+.+.++...-- ...+..+-.+|..-.-.|++.....+..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 4566778888899999999999988665421 1223344445555555677766665555443
No 483
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.74 E-value=7.3e+02 Score=24.33 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 35677788889999999999998877554433333332222222222222221 112222222 344
Q ss_pred ccCcHHHHHHHHHHhHH
Q 044169 534 HSGLVQDGQKVFESMVK 550 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~ 550 (742)
..++...|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 45778888887777655
No 484
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.01 E-value=4e+02 Score=23.37 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHh
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKAC 431 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 431 (742)
..++..+.+.++.-.|.++++++.+.+...+..|.-..+..+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 344555555555555666666666655444444444334333
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.00 E-value=8.2e+02 Score=24.62 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 044169 406 IEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVK 449 (742)
Q Consensus 406 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 449 (742)
.++++.|...++.|.-..|..+.-.+++.=.+..+..+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45666777777777777777666666666677777777777654
No 486
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.44 E-value=1e+03 Score=25.59 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=5.9
Q ss_pred hcCChhHHHHHHc
Q 044169 164 KCGDIKSMVAVVK 176 (742)
Q Consensus 164 ~~g~~~~A~~~f~ 176 (742)
+.|+.+-...+++
T Consensus 117 ~~~~~~iv~~Ll~ 129 (480)
T PHA03100 117 KSNSYSIVEYLLD 129 (480)
T ss_pred ccChHHHHHHHHH
Confidence 4444444444444
No 487
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.36 E-value=2.2e+02 Score=21.45 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 044169 235 DEGKQLHAQTMKLQYLSKTAVSNALLTMYIK 265 (742)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (742)
+.|++++..+.... ..++..||++...+.+
T Consensus 14 EmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 14 EMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 44444444443222 4455556655555444
No 488
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.35 E-value=4.4e+02 Score=21.59 Aligned_cols=84 Identities=7% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 044169 288 TAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGL 367 (742)
Q Consensus 288 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 367 (742)
..++..|...+++++|...+.++......++..........-.+...-+....++..+.+.+.........++-+.+...
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l 85 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDI 85 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhC
Q ss_pred CCHH
Q 044169 368 GEIW 371 (742)
Q Consensus 368 g~~~ 371 (742)
.++.
T Consensus 86 ~dl~ 89 (113)
T smart00544 86 EDLE 89 (113)
T ss_pred hhhh
No 489
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.34 E-value=2.7e+02 Score=21.73 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=27.1
Q ss_pred HhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcc
Q 044169 264 IKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYE 301 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 301 (742)
+...+.+.|.++++.++.++..+|..+..++-..|...
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34456777777777777777888888877777766543
No 490
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=21.29 E-value=4.8e+02 Score=21.67 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 646 (742)
.+.+.+.+...+.|..+..+..|++-+....-|+++.+-
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKK 100 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456777788888887766666666655445555555443
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.91 E-value=4.4e+02 Score=23.80 Aligned_cols=48 Identities=15% Similarity=0.026 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 044169 286 SWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLR 333 (742)
Q Consensus 286 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 333 (742)
.-..++..+...++.-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 27 qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 27 QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334444555555555566666666666655555555444444444433
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.30 E-value=3.7e+02 Score=24.29 Aligned_cols=45 Identities=7% Similarity=-0.101 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP 435 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 435 (742)
.++..+...++.-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333344444444555566666655555555544444444444333
No 493
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=20.20 E-value=1.1e+02 Score=32.26 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=77.7
Q ss_pred cccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHH--HHHHHHhcCChhHHHHHHccCCC--CC
Q 044169 107 TCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTAS--LVNMYAKCGDIKSMVAVVKQMPY--LD 182 (742)
Q Consensus 107 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~f~~~~~--~~ 182 (742)
+.|+-...||..+|-+=..+--+......|+..++.++ ||...... -=..-...|.-+.-+++|+.+.- ++
T Consensus 405 tpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedpr 479 (650)
T KOG4334|consen 405 TPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPR 479 (650)
T ss_pred CcccccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCch
Confidence 33444445666555443333333345556666665554 44333222 00111223455677889998763 22
Q ss_pred c----------ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHcc------CCChHHHHHHHHHHHH
Q 044169 183 I----------ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGS------LSAIDEGKQLHAQTMK 246 (742)
Q Consensus 183 ~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~------~~~~~~a~~~~~~~~~ 246 (742)
+ ..|+.|..++.++-.+.+ +.+=.+|...+-+-+.++ -+|++ ..+..++.++-.+.+-
T Consensus 480 v~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~i-----m~~Gkht~~~~cknkr~gkQlASQ~il 553 (650)
T KOG4334|consen 480 VVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVI-----MILGKHTEEAECKNKRQGKQLASQRIL 553 (650)
T ss_pred HHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeE-----eeeccceeeeeeechhHHHHHHHHHHH
Confidence 2 247788888777655541 222233433332223222 22222 2355666777666555
Q ss_pred hCCCCChhHHHHHHHHHHhC
Q 044169 247 LQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 247 ~~~~~~~~~~~~li~~~~~~ 266 (742)
.-+.|-..+|.+|+++|.+.
T Consensus 554 q~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 554 QKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHhCHHhhhHHHHHHHhhhh
Confidence 55678888888888888765
No 494
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=20.19 E-value=1.6e+02 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=35.0
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP 588 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 588 (742)
..+.|+.++|..+|+.... +.|+ +....-+........++-+|-.++-+.. ..|
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 3578999999999998864 3343 4444455555555566677777766543 444
No 495
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=20.19 E-value=5.8e+02 Score=22.19 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
-|.-+|.+.++++++.+..+.+++.+|+|..+...
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34456777777888888888888888776665443
Done!