Query 044169
Match_columns 742
No_of_seqs 763 out of 4722
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:08:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-40 7.3E-45 373.1 39.3 489 50-636 74-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.8E-40 9.5E-45 372.2 40.0 482 162-654 63-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.4E-25 1.2E-29 234.6 42.9 371 191-639 7-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 7.3E-27 2.5E-31 251.8 20.9 212 200-433 7-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.4E-24 1.9E-28 225.3 42.2 353 292-653 7-368 (388)
6 4g26_A Pentatricopeptide repea 99.9 2.9E-26 9.8E-31 247.2 22.4 184 387-571 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.4E-27 222.0 34.0 92 185-279 8-99 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.7E-22 2.3E-26 217.6 32.6 428 219-654 7-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.5E-20 5.1E-25 203.1 36.1 339 283-649 25-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.5E-20 5.2E-25 208.0 35.5 427 185-624 27-496 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 6.8E-20 2.3E-24 197.9 33.3 367 250-643 23-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 2E-19 6.7E-24 199.1 36.8 427 80-589 36-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.6E-17 8.9E-22 171.4 36.7 305 321-654 5-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.9E-17 1.3E-21 170.0 36.0 328 283-638 2-354 (359)
15 3hym_B Cell division cycle pro 99.8 3.5E-17 1.2E-21 168.3 30.9 287 351-640 19-321 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.6E-19 165.9 48.6 378 221-645 988-1376(1630)
17 1xi4_A Clathrin heavy chain; a 99.8 4.1E-14 1.4E-18 161.2 52.0 421 116-584 984-1442(1630)
18 3hym_B Cell division cycle pro 99.8 1.4E-16 4.8E-21 163.8 29.3 266 383-653 19-299 (330)
19 2xm6_A Protein corresponding t 99.8 3.2E-15 1.1E-19 163.0 40.9 366 252-636 38-452 (490)
20 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.3E-22 168.6 21.5 347 264-649 14-368 (449)
21 1fch_A Peroxisomal targeting s 99.8 7.7E-17 2.6E-21 168.7 25.3 280 364-649 35-355 (368)
22 1b89_A Protein (clathrin heavy 99.8 6.5E-17 2.2E-21 165.8 22.9 344 163-585 14-370 (449)
23 2ooe_A Cleavage stimulation fa 99.8 1.2E-14 3.9E-19 160.2 42.0 412 217-654 12-493 (530)
24 2ooe_A Cleavage stimulation fa 99.7 5.6E-15 1.9E-19 162.8 35.9 411 181-622 11-495 (530)
25 2xm6_A Protein corresponding t 99.7 4.1E-14 1.4E-18 154.1 42.3 354 281-655 36-434 (490)
26 4eqf_A PEX5-related protein; a 99.7 1.4E-16 4.7E-21 166.7 20.6 259 385-649 64-352 (365)
27 3mkr_A Coatomer subunit epsilo 99.7 5E-15 1.7E-19 148.8 29.7 272 362-647 7-288 (291)
28 3cv0_A Peroxisome targeting si 99.7 7.9E-16 2.7E-20 157.9 23.0 260 386-650 21-312 (327)
29 3mkr_A Coatomer subunit epsilo 99.7 2.2E-15 7.6E-20 151.4 24.8 247 393-654 6-265 (291)
30 4eqf_A PEX5-related protein; a 99.7 2E-15 6.8E-20 157.9 24.0 232 420-654 64-311 (365)
31 4g1t_A Interferon-induced prot 99.7 1.7E-14 5.8E-19 156.6 31.8 365 252-663 50-469 (472)
32 1fch_A Peroxisomal targeting s 99.7 2E-15 7E-20 157.8 23.3 255 396-653 35-314 (368)
33 4g1t_A Interferon-induced prot 99.6 1.2E-13 4E-18 149.9 28.9 384 183-631 51-471 (472)
34 3cv0_A Peroxisome targeting si 99.6 1.4E-13 4.6E-18 141.1 26.7 264 284-584 21-312 (327)
35 3uq3_A Heat shock protein STI1 99.6 8.9E-14 3.1E-18 137.0 23.9 215 426-653 10-236 (258)
36 3spa_A Mtrpol, DNA-directed RN 99.6 5.6E-16 1.9E-20 171.0 8.3 150 352-501 125-286 (1134)
37 3spa_A Mtrpol, DNA-directed RN 99.6 1.2E-15 4.1E-20 168.4 9.6 127 453-580 124-258 (1134)
38 2pl2_A Hypothetical conserved 99.6 5.1E-14 1.7E-18 135.0 20.0 195 453-651 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.6E-18 134.2 22.2 233 387-632 6-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.6E-13 8.7E-18 135.3 21.9 241 398-647 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 4.6E-13 1.6E-17 133.3 20.1 244 359-638 8-269 (272)
42 2vq2_A PILW, putative fimbrial 99.5 3.6E-12 1.2E-16 122.5 23.4 197 455-653 7-211 (225)
43 3e4b_A ALGK; tetratricopeptide 99.5 2.8E-12 9.5E-17 137.5 24.7 368 227-651 12-419 (452)
44 2ho1_A Type 4 fimbrial biogene 99.5 2.9E-12 9.8E-17 125.9 22.6 197 456-654 37-239 (252)
45 2q7f_A YRRB protein; TPR, prot 99.5 8.8E-13 3E-17 128.6 18.1 175 457-634 58-237 (243)
46 2ho1_A Type 4 fimbrial biogene 99.5 6E-12 2.1E-16 123.5 23.7 205 386-628 37-247 (252)
47 2pl2_A Hypothetical conserved 99.5 2.9E-12 1E-16 122.6 20.8 196 383-584 2-211 (217)
48 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.5E-16 121.7 27.2 224 385-654 5-252 (273)
49 3e4b_A ALGK; tetratricopeptide 99.5 7.4E-12 2.5E-16 134.2 25.8 345 123-517 9-388 (452)
50 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4E-17 127.7 17.9 198 454-654 21-223 (243)
51 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.5E-16 119.3 24.2 201 427-630 14-222 (225)
52 1ouv_A Conserved hypothetical 99.5 2.2E-11 7.4E-16 121.3 26.3 227 353-623 5-255 (273)
53 2h6f_A Protein farnesyltransfe 99.5 6.1E-12 2.1E-16 130.6 23.0 246 386-637 97-366 (382)
54 3vtx_A MAMA; tetratricopeptide 99.4 7.4E-12 2.5E-16 116.3 20.3 165 486-654 4-171 (184)
55 3u4t_A TPR repeat-containing p 99.4 3.5E-11 1.2E-15 119.5 25.9 239 320-597 4-262 (272)
56 2h6f_A Protein farnesyltransfe 99.4 5.8E-12 2E-16 130.8 19.4 227 421-653 97-348 (382)
57 3sf4_A G-protein-signaling mod 99.4 6.2E-12 2.1E-16 133.0 20.0 263 389-652 12-335 (406)
58 4abn_A Tetratricopeptide repea 99.4 3.5E-12 1.2E-16 137.6 17.8 207 438-649 85-317 (474)
59 4a1s_A PINS, partner of inscut 99.4 4.9E-12 1.7E-16 134.2 18.4 261 391-652 53-371 (411)
60 3ro2_A PINS homolog, G-protein 99.4 1.4E-11 4.8E-16 126.3 21.1 262 391-653 10-332 (338)
61 4e6h_A MRNA 3'-END-processing 99.4 2.3E-09 8E-14 118.7 38.6 417 181-625 64-576 (679)
62 3sf4_A G-protein-signaling mod 99.4 9.5E-12 3.3E-16 131.6 18.0 254 388-641 49-364 (406)
63 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.7E-11 5.9E-16 121.9 18.7 219 431-654 15-245 (275)
64 3vtx_A MAMA; tetratricopeptide 99.3 5.5E-11 1.9E-15 110.3 18.6 167 455-624 4-175 (184)
65 4a1s_A PINS, partner of inscut 99.3 4.4E-11 1.5E-15 126.9 17.8 262 360-621 54-374 (411)
66 3nf1_A KLC 1, kinesin light ch 99.3 9.8E-12 3.3E-16 126.1 11.5 236 386-652 27-306 (311)
67 2ond_A Cleavage stimulation fa 99.3 5.9E-10 2E-14 113.0 24.4 218 403-624 33-275 (308)
68 4gyw_A UDP-N-acetylglucosamine 99.3 6.1E-11 2.1E-15 133.1 18.4 162 487-652 9-173 (723)
69 4e6h_A MRNA 3'-END-processing 99.3 2.1E-08 7.3E-13 111.1 38.2 423 84-551 47-570 (679)
70 3ro2_A PINS homolog, G-protein 99.3 1.8E-10 6.1E-15 118.0 19.4 235 388-622 45-335 (338)
71 3as5_A MAMA; tetratricopeptide 99.3 2.2E-10 7.7E-15 105.9 18.2 158 493-653 14-173 (186)
72 2ond_A Cleavage stimulation fa 99.3 5.2E-10 1.8E-14 113.4 22.2 213 438-655 33-272 (308)
73 3ulq_A Response regulator aspa 99.2 6.5E-10 2.2E-14 116.6 23.4 226 393-651 110-366 (383)
74 3ulq_A Response regulator aspa 99.2 1.7E-10 5.7E-15 121.1 18.4 231 462-699 109-374 (383)
75 3nf1_A KLC 1, kinesin light ch 99.2 2E-11 6.9E-16 123.8 10.3 239 353-622 26-310 (311)
76 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.6E-14 105.6 20.7 204 419-634 5-224 (228)
77 3as5_A MAMA; tetratricopeptide 99.2 1.2E-09 4.2E-14 100.8 19.6 168 456-626 8-180 (186)
78 1hz4_A MALT regulatory protein 99.2 1.2E-08 4E-13 106.5 29.3 258 395-652 23-321 (373)
79 4i17_A Hypothetical protein; T 99.2 9.3E-10 3.2E-14 106.0 18.8 189 455-654 6-210 (228)
80 4abn_A Tetratricopeptide repea 99.2 5.1E-10 1.7E-14 120.7 17.7 179 471-654 83-288 (474)
81 3q15_A PSP28, response regulat 99.1 1.7E-09 6E-14 113.1 20.3 220 431-651 111-363 (378)
82 3q15_A PSP28, response regulat 99.1 3.8E-08 1.3E-12 102.8 26.7 228 392-619 107-365 (378)
83 3qky_A Outer membrane assembly 99.1 7.6E-09 2.6E-13 101.9 19.6 206 455-700 14-248 (261)
84 3edt_B KLC 2, kinesin light ch 99.1 1.2E-09 4E-14 108.8 13.5 196 457-652 44-280 (283)
85 1hz4_A MALT regulatory protein 99.0 2.3E-07 8E-12 96.5 29.1 155 359-513 98-279 (373)
86 4gyw_A UDP-N-acetylglucosamine 99.0 3.5E-09 1.2E-13 118.8 15.7 163 455-621 8-176 (723)
87 3qky_A Outer membrane assembly 98.9 2.5E-08 8.5E-13 98.2 18.2 202 419-642 13-250 (261)
88 2fo7_A Synthetic consensus TPR 98.9 2.1E-08 7.1E-13 86.8 15.5 123 529-653 8-132 (136)
89 3mv2_B Coatomer subunit epsilo 98.9 7.9E-08 2.7E-12 94.5 21.1 244 363-628 22-291 (310)
90 1qqe_A Vesicular transport pro 98.9 7E-09 2.4E-13 104.0 14.1 200 436-650 32-266 (292)
91 1qqe_A Vesicular transport pro 98.9 2.1E-08 7.1E-13 100.6 17.5 166 458-625 79-275 (292)
92 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.4E-08 2.2E-12 92.7 19.2 180 456-655 4-215 (225)
93 3mv2_B Coatomer subunit epsilo 98.9 2.1E-07 7E-12 91.5 22.3 240 394-655 21-284 (310)
94 4ga2_A E3 SUMO-protein ligase 98.9 2.1E-09 7.2E-14 95.7 7.4 139 497-639 7-149 (150)
95 3edt_B KLC 2, kinesin light ch 98.9 2.7E-08 9.3E-13 98.7 16.2 197 423-619 45-281 (283)
96 2fo7_A Synthetic consensus TPR 98.9 6.2E-08 2.1E-12 83.7 16.2 131 489-622 3-135 (136)
97 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.5E-12 88.0 20.4 172 475-655 5-199 (212)
98 2pzi_A Probable serine/threoni 98.9 1.3E-08 4.3E-13 114.9 13.6 190 432-627 402-610 (681)
99 3qou_A Protein YBBN; thioredox 98.8 9E-08 3.1E-12 95.5 17.5 174 473-651 103-282 (287)
100 2uy1_A Cleavage stimulation fa 98.8 9.8E-06 3.4E-10 87.0 32.3 366 199-618 11-412 (493)
101 3urz_A Uncharacterized protein 98.8 1.7E-07 5.8E-12 88.5 16.3 133 493-631 60-197 (208)
102 2vsy_A XCC0866; transferase, g 98.8 8.8E-08 3E-12 106.1 16.5 159 469-631 2-169 (568)
103 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-08 4E-13 90.8 7.7 122 528-652 3-128 (150)
104 3gyz_A Chaperone protein IPGC; 98.7 7.3E-08 2.5E-12 85.3 12.1 102 553-654 30-134 (151)
105 2vgx_A Chaperone SYCD; alterna 98.7 4E-08 1.4E-12 87.0 10.0 98 557-654 20-119 (148)
106 2pzi_A Probable serine/threoni 98.7 2.5E-07 8.5E-12 104.3 18.8 167 467-638 402-582 (681)
107 4gco_A Protein STI-1; structur 98.7 1.2E-07 4E-12 81.3 12.4 107 524-632 15-123 (126)
108 2ifu_A Gamma-SNAP; membrane fu 98.7 2.9E-07 9.9E-12 92.9 17.3 220 399-646 4-254 (307)
109 2r5s_A Uncharacterized protein 98.7 1.3E-07 4.5E-12 86.5 13.4 75 577-651 93-171 (176)
110 3urz_A Uncharacterized protein 98.7 1.9E-07 6.6E-12 88.1 14.3 158 492-654 9-187 (208)
111 2vsy_A XCC0866; transferase, g 98.7 2.3E-07 7.7E-12 102.7 16.8 146 434-584 2-154 (568)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.1E-07 2.1E-11 84.8 16.7 120 529-653 13-150 (213)
113 3u3w_A Transcriptional activat 98.7 2.4E-06 8.3E-11 85.4 21.8 159 493-651 81-264 (293)
114 2xcb_A PCRH, regulatory protei 98.7 3.1E-07 1.1E-11 80.6 13.3 97 558-654 18-116 (142)
115 4gco_A Protein STI-1; structur 98.6 2.8E-07 9.7E-12 78.8 12.4 101 554-654 8-111 (126)
116 3dra_A Protein farnesyltransfe 98.6 4.9E-06 1.7E-10 82.6 23.1 149 501-652 124-286 (306)
117 2ifu_A Gamma-SNAP; membrane fu 98.6 2.4E-07 8.1E-12 93.6 12.9 196 434-651 4-222 (307)
118 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.5E-06 5E-11 83.1 17.7 183 421-624 4-218 (225)
119 2qfc_A PLCR protein; TPR, HTH, 98.6 1.2E-06 4.2E-11 87.6 17.6 162 489-651 77-264 (293)
120 1a17_A Serine/threonine protei 98.6 8.3E-07 2.9E-11 79.9 14.8 125 525-651 16-144 (166)
121 3dra_A Protein farnesyltransfe 98.6 3.2E-05 1.1E-09 76.8 26.9 228 399-632 46-301 (306)
122 3qou_A Protein YBBN; thioredox 98.6 1.9E-06 6.5E-11 85.8 17.9 159 422-583 118-280 (287)
123 1na0_A Designed protein CTPR3; 98.6 1.1E-06 3.9E-11 74.4 14.2 114 523-638 10-125 (125)
124 2c2l_A CHIP, carboxy terminus 98.6 1.6E-07 5.5E-12 93.3 9.8 190 456-653 4-199 (281)
125 2r5s_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 82.9 12.1 156 459-618 9-172 (176)
126 2vyi_A SGTA protein; chaperone 98.5 9.5E-07 3.2E-11 75.6 13.0 116 523-640 13-130 (131)
127 2lni_A Stress-induced-phosphop 98.5 9.1E-07 3.1E-11 76.1 12.9 114 524-639 18-133 (133)
128 2e2e_A Formate-dependent nitri 98.5 7.6E-07 2.6E-11 81.4 12.9 120 533-654 21-145 (177)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.9E-06 6.7E-11 81.3 15.7 145 459-623 9-154 (213)
130 3upv_A Heat shock protein STI1 98.5 1E-06 3.4E-11 75.4 12.0 97 558-654 4-102 (126)
131 3rjv_A Putative SEL1 repeat pr 98.5 5.3E-06 1.8E-10 78.3 18.0 172 440-621 5-199 (212)
132 1p5q_A FKBP52, FK506-binding p 98.5 1.5E-06 5.2E-11 88.7 14.9 94 558-651 196-292 (336)
133 2uy1_A Cleavage stimulation fa 98.4 2.5E-05 8.4E-10 84.0 23.7 344 265-650 6-380 (493)
134 3sz7_A HSC70 cochaperone (SGT) 98.4 3.9E-06 1.3E-10 75.5 14.6 95 558-652 11-107 (164)
135 1hxi_A PEX5, peroxisome target 98.4 1.2E-06 4E-11 74.3 10.1 94 561-654 20-115 (121)
136 3gyz_A Chaperone protein IPGC; 98.4 2.8E-06 9.6E-11 75.0 12.6 105 518-624 31-138 (151)
137 3q49_B STIP1 homology and U bo 98.4 3.1E-06 1.1E-10 73.3 12.8 99 556-654 7-107 (137)
138 2vgx_A Chaperone SYCD; alterna 98.4 7.3E-07 2.5E-11 78.8 8.6 109 518-628 16-127 (148)
139 3u3w_A Transcriptional activat 98.4 3.6E-05 1.2E-09 76.7 21.9 158 462-619 81-266 (293)
140 4f3v_A ESX-1 secretion system 98.4 7.7E-06 2.6E-10 79.3 15.9 123 528-653 108-237 (282)
141 2kck_A TPR repeat; tetratricop 98.4 1.8E-06 6.1E-11 71.5 10.2 98 558-655 6-108 (112)
142 2qfc_A PLCR protein; TPR, HTH, 98.4 1.3E-05 4.4E-10 80.1 17.9 162 458-619 77-266 (293)
143 1elw_A TPR1-domain of HOP; HOP 98.4 5.2E-06 1.8E-10 69.3 12.6 95 559-653 5-101 (118)
144 2fbn_A 70 kDa peptidylprolyl i 98.3 4E-06 1.4E-10 78.2 12.7 167 466-653 14-186 (198)
145 1elw_A TPR1-domain of HOP; HOP 98.3 8.1E-06 2.8E-10 68.1 13.4 109 524-634 6-116 (118)
146 1na0_A Designed protein CTPR3; 98.3 5.3E-06 1.8E-10 70.1 12.2 97 558-654 9-107 (125)
147 4f3v_A ESX-1 secretion system 98.3 1.4E-06 4.8E-11 84.4 9.2 137 490-631 105-248 (282)
148 4gcn_A Protein STI-1; structur 98.3 2.8E-06 9.4E-11 72.7 10.2 94 559-652 9-111 (127)
149 2xcb_A PCRH, regulatory protei 98.3 3.7E-06 1.3E-10 73.6 11.0 108 524-633 20-129 (142)
150 2lni_A Stress-induced-phosphop 98.3 4.6E-06 1.6E-10 71.6 11.4 100 555-654 13-114 (133)
151 2e2e_A Formate-dependent nitri 98.3 4.4E-06 1.5E-10 76.2 11.8 127 498-627 21-152 (177)
152 3upv_A Heat shock protein STI1 98.3 8E-06 2.7E-10 69.6 12.2 110 524-635 6-123 (126)
153 3gw4_A Uncharacterized protein 98.3 1.1E-05 3.8E-10 75.2 14.1 116 468-583 4-132 (203)
154 3gw4_A Uncharacterized protein 98.3 2E-05 7E-10 73.4 16.0 154 498-652 3-175 (203)
155 1a17_A Serine/threonine protei 98.2 1.8E-05 6.3E-10 70.8 14.7 126 490-618 16-145 (166)
156 3sz7_A HSC70 cochaperone (SGT) 98.2 8.9E-06 3E-10 73.1 12.3 108 523-632 12-121 (164)
157 2dba_A Smooth muscle cell asso 98.2 2.1E-05 7.2E-10 68.9 14.2 109 523-634 29-143 (148)
158 2vyi_A SGTA protein; chaperone 98.2 1.1E-05 3.9E-10 68.6 12.2 98 557-654 11-110 (131)
159 2dba_A Smooth muscle cell asso 98.2 1.2E-05 4.2E-10 70.4 12.5 99 556-654 26-129 (148)
160 3q7a_A Farnesyltransferase alp 98.2 0.00013 4.4E-09 73.2 20.9 177 472-652 105-330 (349)
161 2hr2_A Hypothetical protein; a 98.2 7.4E-06 2.5E-10 71.6 10.0 62 591-652 58-130 (159)
162 2xev_A YBGF; tetratricopeptide 98.2 7.2E-06 2.5E-10 70.1 9.8 90 564-653 8-105 (129)
163 1wao_1 Serine/threonine protei 98.2 8.6E-06 2.9E-10 87.3 12.4 118 530-649 14-135 (477)
164 3q49_B STIP1 homology and U bo 98.2 1.4E-05 4.9E-10 69.0 11.7 112 521-634 8-126 (137)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.3E-05 7.9E-10 83.6 14.5 144 487-652 268-414 (457)
166 3rkv_A Putative peptidylprolyl 98.1 2.4E-05 8.3E-10 70.0 12.2 64 590-653 63-126 (162)
167 3q7a_A Farnesyltransferase alp 98.1 0.0014 5E-08 65.6 26.1 238 390-632 58-345 (349)
168 1elr_A TPR2A-domain of HOP; HO 98.1 1.3E-05 4.3E-10 68.4 9.6 95 559-653 5-108 (131)
169 3dss_A Geranylgeranyl transfer 98.1 0.00092 3.2E-08 66.7 23.5 178 473-653 91-304 (331)
170 2c2l_A CHIP, carboxy terminus 98.1 3E-05 1E-09 76.7 12.7 111 521-633 3-115 (281)
171 3k9i_A BH0479 protein; putativ 98.1 4.9E-06 1.7E-10 69.9 6.0 82 571-652 3-89 (117)
172 3dss_A Geranylgeranyl transfer 98.0 0.0009 3.1E-08 66.7 22.9 193 437-634 90-319 (331)
173 1p5q_A FKBP52, FK506-binding p 98.0 3.4E-05 1.2E-09 78.5 13.0 127 488-618 148-293 (336)
174 1elr_A TPR2A-domain of HOP; HO 98.0 5.2E-05 1.8E-09 64.5 12.3 106 528-636 10-124 (131)
175 4gcn_A Protein STI-1; structur 98.0 2.2E-05 7.5E-10 67.0 9.6 108 489-627 10-119 (127)
176 4b4t_Q 26S proteasome regulato 98.0 8.3E-05 2.8E-09 78.8 16.0 162 490-651 58-243 (434)
177 3ro3_A PINS homolog, G-protein 98.0 4.7E-05 1.6E-09 67.6 11.9 92 561-652 52-157 (164)
178 1hxi_A PEX5, peroxisome target 98.0 2.8E-05 9.5E-10 65.7 9.7 96 527-624 22-119 (121)
179 2xev_A YBGF; tetratricopeptide 98.0 0.00011 3.9E-09 62.4 13.4 105 529-633 9-119 (129)
180 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00011 3.8E-09 68.2 14.1 94 560-653 40-151 (198)
181 3rkv_A Putative peptidylprolyl 98.0 2.8E-05 9.6E-10 69.6 9.5 78 558-635 63-143 (162)
182 2kck_A TPR repeat; tetratricop 97.9 3.2E-05 1.1E-09 63.7 9.1 94 528-623 12-110 (112)
183 1ihg_A Cyclophilin 40; ppiase 97.9 5E-05 1.7E-09 78.3 11.9 138 487-646 223-363 (370)
184 2if4_A ATFKBP42; FKBP-like, al 97.9 2E-05 6.8E-10 80.4 8.0 148 487-654 179-329 (338)
185 1dce_A Protein (RAB geranylger 97.9 0.00044 1.5E-08 75.4 18.9 169 470-642 43-244 (567)
186 3k9i_A BH0479 protein; putativ 97.9 1.6E-05 5.3E-10 66.8 5.8 93 535-628 3-99 (117)
187 4b4t_Q 26S proteasome regulato 97.8 0.00025 8.4E-09 75.0 16.2 158 495-652 12-203 (434)
188 2l6j_A TPR repeat-containing p 97.8 3.6E-05 1.2E-09 63.5 7.6 92 557-648 3-102 (111)
189 1na3_A Designed protein CTPR2; 97.8 0.00011 3.9E-09 57.8 9.8 81 558-638 9-91 (91)
190 3n71_A Histone lysine methyltr 97.8 0.00014 4.7E-09 77.4 13.2 123 533-655 320-466 (490)
191 2hr2_A Hypothetical protein; a 97.8 7.1E-05 2.4E-09 65.3 9.0 72 560-631 59-143 (159)
192 3ro3_A PINS homolog, G-protein 97.8 7.4E-05 2.5E-09 66.2 9.6 131 490-620 12-159 (164)
193 3ma5_A Tetratricopeptide repea 97.8 0.00011 3.8E-09 59.4 9.5 65 588-652 5-69 (100)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 5.2E-05 1.8E-09 77.2 8.9 152 456-624 179-333 (338)
195 1ihg_A Cyclophilin 40; ppiase 97.7 0.00025 8.6E-09 73.0 12.7 113 523-654 224-337 (370)
196 2kat_A Uncharacterized protein 97.7 0.0001 3.5E-09 61.3 7.9 77 577-653 4-82 (115)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00042 1.4E-08 73.8 14.5 65 590-654 317-381 (457)
198 1wao_1 Serine/threonine protei 97.7 0.00014 4.7E-09 77.9 10.3 115 464-582 14-134 (477)
199 1zu2_A Mitochondrial import re 97.6 4.6E-05 1.6E-09 66.4 5.2 84 571-654 15-121 (158)
200 1klx_A Cysteine rich protein B 97.5 0.0012 4.1E-08 57.0 12.9 111 537-655 10-128 (138)
201 3bee_A Putative YFRE protein; 97.5 0.00059 2E-08 54.0 9.8 70 587-656 3-75 (93)
202 1dce_A Protein (RAB geranylger 97.4 0.002 6.9E-08 70.2 16.0 150 499-652 40-220 (567)
203 2l6j_A TPR repeat-containing p 97.4 0.00057 1.9E-08 56.0 9.0 66 589-654 3-68 (111)
204 3n71_A Histone lysine methyltr 97.3 0.00072 2.5E-08 71.9 9.9 117 566-700 317-451 (490)
205 1zu2_A Mitochondrial import re 97.3 0.00041 1.4E-08 60.4 6.5 73 575-654 63-148 (158)
206 2kat_A Uncharacterized protein 97.3 0.0013 4.5E-08 54.4 9.6 80 541-622 4-85 (115)
207 1klx_A Cysteine rich protein B 97.2 0.0044 1.5E-07 53.3 12.8 112 501-621 9-128 (138)
208 3qwp_A SET and MYND domain-con 97.2 0.0013 4.4E-08 68.8 11.1 91 590-698 329-427 (429)
209 1na3_A Designed protein CTPR2; 97.2 0.0013 4.5E-08 51.4 8.6 66 589-654 8-73 (91)
210 3ly7_A Transcriptional activat 97.0 0.022 7.5E-07 57.0 16.7 47 484-532 191-243 (372)
211 3qww_A SET and MYND domain-con 96.9 0.0013 4.5E-08 68.7 6.9 62 591-652 341-410 (433)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0055 1.9E-07 48.8 9.2 78 564-649 6-86 (99)
213 2kc7_A BFR218_protein; tetratr 96.8 0.0036 1.2E-07 49.9 7.9 59 596-654 6-65 (99)
214 3ma5_A Tetratricopeptide repea 96.8 0.0047 1.6E-07 49.5 8.5 63 486-550 6-69 (100)
215 3qww_A SET and MYND domain-con 96.7 0.0076 2.6E-07 62.9 11.3 69 560-628 342-425 (433)
216 3qwp_A SET and MYND domain-con 96.6 0.014 4.8E-07 61.0 12.2 71 560-630 331-416 (429)
217 1wy6_A Hypothetical protein ST 96.5 0.19 6.6E-06 41.3 15.2 141 497-656 17-157 (172)
218 1pc2_A Mitochondria fission pr 96.4 0.019 6.5E-07 49.3 10.0 63 589-651 31-98 (152)
219 3ly7_A Transcriptional activat 96.3 0.046 1.6E-06 54.7 13.5 134 518-655 190-341 (372)
220 3mkq_A Coatomer beta'-subunit; 96.2 0.14 4.8E-06 58.7 19.2 100 364-481 662-761 (814)
221 3lvg_A Clathrin heavy chain 1; 96.1 0.0023 8E-08 65.1 2.9 210 60-308 54-286 (624)
222 3u64_A Protein TP_0956; tetrat 95.9 0.025 8.6E-07 54.2 8.8 87 574-660 179-276 (301)
223 3mkq_A Coatomer beta'-subunit; 95.9 0.069 2.4E-06 61.3 14.4 150 468-649 611-761 (814)
224 2v5f_A Prolyl 4-hydroxylase su 95.8 0.053 1.8E-06 43.6 9.2 70 562-631 9-87 (104)
225 3bee_A Putative YFRE protein; 95.5 0.096 3.3E-06 41.0 9.5 69 555-623 3-76 (93)
226 3lvg_A Clathrin heavy chain 1; 95.4 0.02 6.7E-07 58.5 6.4 238 151-407 53-325 (624)
227 3mkq_B Coatomer subunit alpha; 95.2 1.1 3.8E-05 39.4 16.0 104 464-585 13-116 (177)
228 1pc2_A Mitochondria fission pr 95.1 0.1 3.6E-06 44.7 8.9 88 539-628 15-109 (152)
229 1qsa_A Protein (soluble lytic 94.6 6.3 0.00022 42.8 27.5 114 501-618 228-347 (618)
230 1nzn_A CGI-135 protein, fissio 94.4 0.28 9.6E-06 40.4 9.5 91 533-625 12-109 (126)
231 3mkq_B Coatomer subunit alpha; 94.1 1.7 5.7E-05 38.3 14.4 44 499-548 17-60 (177)
232 4gns_B Protein CSD3, chitin bi 93.9 0.27 9.1E-06 54.5 11.2 55 597-651 344-398 (754)
233 2v5f_A Prolyl 4-hydroxylase su 93.7 0.29 1E-05 39.1 8.5 65 589-653 4-75 (104)
234 1y8m_A FIS1; mitochondria, unk 92.5 4 0.00014 34.2 13.4 65 588-652 37-105 (144)
235 1nzn_A CGI-135 protein, fissio 92.3 2.8 9.4E-05 34.5 12.2 88 499-589 13-106 (126)
236 3u64_A Protein TP_0956; tetrat 91.3 0.25 8.6E-06 47.3 5.7 75 504-583 180-265 (301)
237 1wy6_A Hypothetical protein ST 91.2 5.6 0.00019 32.9 13.2 84 366-452 73-156 (172)
238 4h7y_A Dual specificity protei 91.2 0.9 3.1E-05 38.4 8.2 58 572-629 74-133 (161)
239 4ady_A RPN2, 26S proteasome re 90.1 30 0.001 39.3 32.8 164 430-599 499-670 (963)
240 3ffl_A Anaphase-promoting comp 89.8 1.7 5.8E-05 37.5 9.0 30 557-586 121-150 (167)
241 3o48_A Mitochondria fission 1 89.3 2.9 9.8E-05 34.6 9.5 65 588-652 38-106 (134)
242 4h7y_A Dual specificity protei 88.5 2.7 9.3E-05 35.6 9.0 54 602-655 72-125 (161)
243 2wpv_A GET4, UPF0363 protein Y 87.5 22 0.00075 34.5 19.7 165 257-448 37-215 (312)
244 4b4t_P 26S proteasome regulato 87.4 24 0.00082 36.5 17.9 257 197-485 30-324 (445)
245 2p58_C Putative type III secre 87.3 4.3 0.00015 31.3 8.5 87 130-221 20-106 (116)
246 3lpz_A GET4 (YOR164C homolog); 86.6 26 0.00087 34.4 19.7 135 154-299 37-182 (336)
247 2uwj_G Type III export protein 86.5 4.1 0.00014 31.4 8.0 86 131-221 20-105 (115)
248 3lpz_A GET4 (YOR164C homolog); 85.6 29 0.00098 34.0 22.2 167 357-550 38-215 (336)
249 4gns_B Protein CSD3, chitin bi 85.4 33 0.0011 38.0 18.2 54 226-280 345-398 (754)
250 4fhn_B Nucleoporin NUP120; pro 83.4 16 0.00054 43.3 15.8 163 359-540 817-989 (1139)
251 3txn_A 26S proteasome regulato 83.3 24 0.00082 35.7 14.8 159 489-647 21-204 (394)
252 2ff4_A Probable regulatory pro 83.0 3.3 0.00011 42.2 8.6 67 593-659 174-245 (388)
253 2uwj_G Type III export protein 82.8 15 0.0005 28.4 9.9 88 434-526 19-106 (115)
254 2wpv_A GET4, UPF0363 protein Y 82.6 37 0.0013 32.9 21.3 167 357-550 36-216 (312)
255 2p58_C Putative type III secre 82.4 15 0.00052 28.4 10.4 88 434-526 20-107 (116)
256 3ffl_A Anaphase-promoting comp 82.1 7.2 0.00025 33.6 8.8 26 625-650 123-148 (167)
257 4ady_A RPN2, 26S proteasome re 80.2 86 0.0029 35.6 32.3 156 364-524 500-663 (963)
258 1y8m_A FIS1; mitochondria, unk 79.3 20 0.00067 30.1 10.2 73 555-627 36-114 (144)
259 2ff4_A Probable regulatory pro 79.2 13 0.00045 37.7 11.5 68 492-560 176-247 (388)
260 2qx5_A Nucleoporin NIC96; mRNA 76.7 90 0.0031 33.9 19.1 81 392-483 300-383 (661)
261 3o48_A Mitochondria fission 1 76.0 18 0.00063 29.8 9.1 37 590-626 78-114 (134)
262 1v54_E Cytochrome C oxidase po 74.4 12 0.00039 29.2 6.9 62 503-566 26-87 (109)
263 4fhn_B Nucleoporin NUP120; pro 70.4 25 0.00084 41.7 12.3 64 592-655 901-969 (1139)
264 3ltj_A Alpharep-4; protein eng 69.9 59 0.002 28.8 18.0 80 150-233 26-105 (201)
265 1qsa_A Protein (soluble lytic 69.3 1.3E+02 0.0044 32.5 31.5 226 400-643 228-469 (618)
266 1zbp_A Hypothetical protein VP 68.9 49 0.0017 31.1 11.3 119 496-625 6-135 (273)
267 4b4t_P 26S proteasome regulato 68.8 1.1E+02 0.0038 31.5 20.4 95 490-584 140-244 (445)
268 1zbp_A Hypothetical protein VP 68.1 13 0.00043 35.1 7.2 58 566-623 5-64 (273)
269 1v54_E Cytochrome C oxidase po 64.4 48 0.0017 25.8 9.7 48 584-631 39-86 (109)
270 3esl_A Checkpoint serine/threo 63.4 79 0.0027 28.2 11.1 53 603-655 92-146 (202)
271 3ltm_A Alpha-REP4; protein eng 63.3 82 0.0028 28.0 17.8 81 149-233 30-110 (211)
272 2y69_E Cytochrome C oxidase su 63.0 24 0.00082 29.1 6.9 60 505-566 71-130 (152)
273 2qx5_A Nucleoporin NIC96; mRNA 58.8 2E+02 0.007 31.2 16.0 27 61-97 154-180 (661)
274 4b4t_R RPN7, 26S proteasome re 56.7 35 0.0012 35.0 9.1 98 457-554 132-240 (429)
275 3mv2_A Coatomer subunit alpha; 53.9 94 0.0032 30.1 10.6 60 581-654 196-257 (325)
276 4b4t_R RPN7, 26S proteasome re 53.8 21 0.00071 36.8 6.7 61 524-584 133-194 (429)
277 3ltm_A Alpha-REP4; protein eng 53.4 1.2E+02 0.0041 26.8 18.3 155 168-334 18-172 (211)
278 1wdy_A 2-5A-dependent ribonucl 52.3 1.5E+02 0.005 27.5 14.7 19 159-177 43-61 (285)
279 3eiq_C Programmed cell death p 51.7 1.9E+02 0.0065 28.6 14.0 67 459-525 220-291 (358)
280 2y69_E Cytochrome C oxidase su 50.7 1.1E+02 0.0036 25.4 9.7 48 584-631 82-129 (152)
281 1wdy_A 2-5A-dependent ribonucl 48.6 1.4E+02 0.0049 27.6 11.7 210 157-381 7-243 (285)
282 1n11_A Ankyrin; clathrin, BAND 46.3 2.1E+02 0.0073 28.8 13.3 16 263-278 120-135 (437)
283 3hra_A Ankyrin repeat family p 44.3 88 0.003 27.4 8.8 150 162-319 12-173 (201)
284 3esl_A Checkpoint serine/threo 43.9 1.8E+02 0.006 26.0 10.5 56 501-557 93-149 (202)
285 4a1g_A Mitotic checkpoint seri 42.7 1.5E+02 0.0053 25.0 9.9 47 609-655 84-132 (152)
286 1k1a_A B-cell lymphoma 3-encod 41.2 2E+02 0.0068 25.8 11.3 82 128-210 17-103 (241)
287 3eiq_C Programmed cell death p 41.1 2.7E+02 0.0094 27.4 12.2 62 358-420 221-287 (358)
288 3kea_A K1L; tropism, ANK repea 40.3 1.2E+02 0.0042 28.6 9.6 227 194-446 7-243 (285)
289 2nsz_A Programmed cell death p 39.5 1.4E+02 0.0048 24.3 8.3 64 257-320 11-79 (129)
290 3ltj_A Alpharep-4; protein eng 38.3 2E+02 0.0069 25.1 18.5 81 251-335 26-106 (201)
291 2nsz_A Programmed cell death p 37.5 1.5E+02 0.0051 24.2 8.2 64 459-522 10-78 (129)
292 2wvi_A Mitotic checkpoint seri 36.8 2E+02 0.0069 24.6 10.0 47 609-655 79-127 (164)
293 1k1a_A B-cell lymphoma 3-encod 36.6 1.1E+02 0.0037 27.7 8.4 17 263-279 86-102 (241)
294 4gq2_M Nucleoporin NUP120; bet 31.9 3.3E+02 0.011 31.2 12.8 34 592-625 899-933 (950)
295 2d2s_A Exocyst complex compone 30.9 1.6E+02 0.0054 27.1 8.1 29 555-583 88-116 (235)
296 3bqo_A Telomeric repeat-bindin 30.5 2E+02 0.007 25.4 8.0 52 574-625 94-152 (211)
297 3eu9_A Huntingtin-interacting 30.5 2.4E+02 0.0083 25.0 9.8 22 158-179 45-66 (240)
298 2ion_A PDCD4, programmed cell 30.2 1.4E+02 0.0047 25.3 6.9 63 257-319 13-80 (152)
299 2ion_A PDCD4, programmed cell 29.8 1.4E+02 0.0047 25.3 6.9 65 458-522 11-80 (152)
300 3mkr_B Coatomer subunit alpha; 29.2 2.7E+02 0.0091 26.9 9.4 60 581-654 187-248 (320)
301 3jxi_A Vanilloid receptor-rela 28.1 63 0.0021 30.0 5.1 52 193-244 12-72 (260)
302 3eu9_A Huntingtin-interacting 27.0 90 0.0031 28.1 6.0 202 162-380 16-233 (240)
303 2d2s_A Exocyst complex compone 26.4 2.1E+02 0.007 26.3 8.0 21 291-311 25-45 (235)
304 2zu6_B Programmed cell death p 25.6 4.5E+02 0.015 25.2 12.8 65 459-523 169-238 (307)
305 3re2_A Predicted protein; meni 25.1 2.2E+02 0.0075 27.9 7.8 75 623-729 374-448 (472)
306 3hra_A Ankyrin repeat family p 24.7 2.4E+02 0.0081 24.4 8.2 16 264-279 13-28 (201)
307 3i5p_A Nucleoporin NUP170; hel 24.6 6.2E+02 0.021 26.4 12.9 68 587-654 175-247 (525)
308 3t8k_A Uncharacterized protein 24.1 3.4E+02 0.012 23.4 9.0 49 405-453 132-183 (186)
309 4a1g_A Mitotic checkpoint seri 24.0 3.3E+02 0.011 23.0 9.2 52 505-557 83-135 (152)
310 1bpo_A Protein (clathrin); cla 23.9 3.2E+02 0.011 28.0 9.2 138 140-286 349-489 (494)
311 2zu6_B Programmed cell death p 23.3 2E+02 0.0068 27.7 7.5 69 389-458 169-239 (307)
312 1n11_A Ankyrin; clathrin, BAND 23.1 4.3E+02 0.015 26.4 10.9 142 127-281 21-171 (437)
313 4b4t_S RPN3, 26S proteasome re 22.7 1.5E+02 0.005 31.1 6.7 62 590-653 231-299 (523)
314 4aez_C MAD3, mitotic spindle c 22.7 2.8E+02 0.0097 25.1 7.8 47 608-654 132-180 (223)
315 1wgl_A TOLL-interacting protei 22.4 1.5E+02 0.005 20.4 4.5 48 611-659 11-58 (59)
316 4b4t_S RPN3, 26S proteasome re 22.0 2E+02 0.0067 30.1 7.5 60 523-584 232-296 (523)
317 3utm_A Tankyrase-1; tankyrase, 21.1 5.4E+02 0.018 24.4 11.0 83 190-279 28-114 (351)
318 1ya0_A SMG-7 transcript varian 20.5 2.9E+02 0.0098 28.8 8.6 42 603-644 165-206 (497)
319 2fe3_A Peroxide operon regulat 20.4 2.8E+02 0.0097 22.9 7.2 42 287-328 24-65 (145)
320 2fe3_A Peroxide operon regulat 20.1 2.4E+02 0.0083 23.3 6.7 41 391-431 26-66 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-40 Score=373.15 Aligned_cols=489 Identities=8% Similarity=-0.044 Sum_probs=353.5
Q ss_pred ccccCCCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhcc
Q 044169 50 QLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSR 129 (742)
Q Consensus 50 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 129 (742)
..|+.+|.+++..|+ .++.+| .+.|++++|+.+|++|... . |+..++..++.+|.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~--------~~~g~~~~A~~~~~~~~~~--~-------------p~~~~~~~l~~~~~~ 129 (597)
T 2xpi_A 74 NAQNTDSLSREDYLR-LWRHDA--------LMQQQYKCAAFVGEKVLDI--T-------------GNPNDAFWLAQVYCC 129 (597)
T ss_dssp --------CHHHHHH-HHHHHH--------HHTTCHHHHHHHHHHHHHH--H-------------CCHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHH-HHHHHH--------HHccCchHHHHHHHHHHhh--C-------------CCchHHHHHHHHHHH
Confidence 678888889999999 999999 9999999999999999854 3 677899999999999
Q ss_pred ccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC-------------------CcccHHHHH
Q 044169 130 EECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYL-------------------DIASCNCLL 190 (742)
Q Consensus 130 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li 190 (742)
.|+++.|..+++.+... ++++.+++.++.+|.++|++++|.++|+++... +..+|+.++
T Consensus 130 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 99999999999987654 688999999999999999999999999964433 367899999
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHH--HH-HHHHHHhCCCCChhHHHHHHHHHHhCC
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGK--QL-HAQTMKLQYLSKTAVSNALLTMYIKCG 267 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (742)
.+|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+......+++.++.+|.+.|
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999998753 223444555544443332222111 11 333443344444556677778888888
Q ss_pred ChHHHHHHHhccCC--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 044169 268 MMEDAESVFEGLVQ--RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQV 345 (742)
Q Consensus 268 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 345 (742)
++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 335 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------------------------------- 335 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-------------------------------
Confidence 88888888888876 677888888888888888888888888876543
Q ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH
Q 044169 346 IKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS 425 (742)
Q Consensus 346 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 425 (742)
+.+..+|+.++.+|.+.|+.++|..+|+++.+.. +.+..++.
T Consensus 336 -------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 336 -------------------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp -------------------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred -------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 1223334444444444444444444444443321 22333444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR 502 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 502 (742)
.++..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence 44444444444444444444444332 3345567777777777777777777777664 3467788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCc--HHHHHHHHHHHhhcCCHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY---GILPE--EAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A 577 (742)
+++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|
T Consensus 457 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 457 ILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888888752 3456788888888888888888888888886532 55677 67889999999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 578 LIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 578 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.+.++++. .+.+..+|..+..+|...|++++|.+.++++++++|+++.++..++++|..
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99988764 344788999999999999999999999999999999999999999888743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-40 Score=372.23 Aligned_cols=482 Identities=11% Similarity=-0.009 Sum_probs=401.5
Q ss_pred HHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHH
Q 044169 162 YAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLH 241 (742)
Q Consensus 162 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 241 (742)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 55678888888999999989999999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-------------------CcchHHHHHHHHHhCCCcch
Q 044169 242 AQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR-------------------NVISWTAIINGFKQHGDYEK 302 (742)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 302 (742)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678899999999999999999999999965433 37899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChhHH--HHH-HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Q 044169 303 PLRLVCLMREDGIDPN-EYTFTVALASCASLRNSHMG--YMF-HAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLK 378 (742)
Q Consensus 303 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a--~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 378 (742)
|+++|++|.+.+ |+ ...+..+...+...+..+.. ..+ +..+...+......+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998864 44 34444444333322222211 111 3444444545556677788999999999999999999
Q ss_pred hcC-CCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchh
Q 044169 379 EMG-KSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVH 457 (742)
Q Consensus 379 ~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~ 457 (742)
++. .+++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 984 24889999999999999999999999999999876 3477889999999999999999999999998764 66789
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 4567899999999999999999999999999853 4467899999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC--HHHHHHHHHHHHHcCC
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-------IKPT--APIWRPLFAACRCHSD 605 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~g~ 605 (742)
.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|+++|+++. ..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999863 34578899999999999999999999999873 3676 7899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.4e-25 Score=234.65 Aligned_cols=371 Identities=14% Similarity=0.173 Sum_probs=248.0
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMME 270 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (742)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 44556677777777776665542 2233344444555566666666666666665543 445556666666666666666
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 271 DAESVFEGLVQ--R-NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 271 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
+|...|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~---------------------------- 134 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDL---------------------------- 134 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTC----------------------------
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc----------------------------
Confidence 66666665532 2 2334555666666666666666666555442 1221
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS 425 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 425 (742)
...+..+...|...|++++|.+.|+++ ..+.+..+|+.+...+.+.|++++|+..|+++.
T Consensus 135 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------ 196 (388)
T 1w3b_A 135 ------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV------------ 196 (388)
T ss_dssp ------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------
T ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------
Confidence 122222333333344444444444333 002234445555555555555555555555444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR 502 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 502 (742)
+.+ +.+...+..+...+...|++++|...|++.. +.+..+|..+..+|.+.|+
T Consensus 197 -----------------------~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 197 -----------------------TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp -----------------------HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 432 2334556666777777777777777777654 3356788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
+++|+..|+++.+. .|+ ..++..+..++.+.|++++|.+.|+++.+. .+.+...+..++.++.+.|++++|.+.+
T Consensus 253 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 253 IDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999884 454 567888899999999999999999999763 4567788999999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 582 SNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 582 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
+++. ..| +..++..+...+.+.|++++|...++++++++|+++.+|..++.+|...|+
T Consensus 329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9865 344 578899999999999999999999999999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.3e-27 Score=251.77 Aligned_cols=212 Identities=12% Similarity=0.061 Sum_probs=164.7
Q ss_pred HHHHHHHHHchhCCCCCCh-hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhc
Q 044169 200 DQAFSFFLKLDGIDVQPNH-YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEG 278 (742)
Q Consensus 200 ~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (742)
..+..+.+.+.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3445566777777766554 357888999999999999999999999999999999999999988887765432
Q ss_pred cCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 279 LVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 279 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1234567889999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 433 (742)
++|.+|++.|++++|.++|++| ++.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888877 66788888888888888888888888888888888888888888888877765
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.4e-24 Score=225.35 Aligned_cols=353 Identities=14% Similarity=0.094 Sum_probs=289.6
Q ss_pred HHHHhCCCcchHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 044169 292 NGFKQHGDYEKPLRLVCLMREDGIDPN-EYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEI 370 (742)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 370 (742)
..+.+.|++++|++.++++.+. .|+ ...+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455566666666666666554 233 3344444455566667777776666666543 44667778888888888888
Q ss_pred HHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 371 WEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 371 ~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
++|.+.|+++ .. +.+..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888876 11 4456679999999999999999999999998864 2234566778888889999999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 044169 449 KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NST 524 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 524 (742)
+.. +.+..++..+..+|.+.|++++|...|+++. +.+...|..+...+...|++++|+..+++..+. .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 874 4567889999999999999999999999886 345668999999999999999999999999884 565 578
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRC 602 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 602 (742)
+..+..++...|++++|.+.|+++.+. .+.+...|..++.+|.+.|++++|++.++++. .+.+..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 899999999999999999999999762 33456789999999999999999999999874 45578899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998863
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.9e-26 Score=247.15 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhCCCCchh
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS---------LATCEQIHSRIVKSKFESNVH 457 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~i~~~~~~~~~~~~~~ 457 (742)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777888888889999999999999888999999999999988876654 678888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998886 67888999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
+.|++++|.+++++|.+ .+..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999965 68999999999988888764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-22 Score=222.03 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 044169 185 SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYI 264 (742)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (742)
.|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455566666777777777777766643 566666666677777777777777777766654 444556666666777
Q ss_pred hCCChHHHHHHHhcc
Q 044169 265 KCGMMEDAESVFEGL 279 (742)
Q Consensus 265 ~~g~~~~A~~~~~~~ 279 (742)
+.|++++|...|+++
T Consensus 85 ~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 85 GLGKFADAMFDLSVL 99 (514)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 777777777666665
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.7e-22 Score=217.58 Aligned_cols=428 Identities=8% Similarity=-0.031 Sum_probs=319.9
Q ss_pred hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHH
Q 044169 219 YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFK 295 (742)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 295 (742)
..+......+...|++++|...|..+++.. |+...+..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456667788889999999999999999986 6899999999999999999999999998754 35678999999999
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHH---HHHHHHhCCCHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTA---IVDMYSGLGEIWE 372 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~ 372 (742)
+.|++++|+..|+++...+ +++......++..+........+.+.+..+...+..++...... .............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998875 34444444444444333322222222222211111111110000 0011111112222
Q ss_pred HHHHHHhcCCC---------CChhhHHHHHHHHHh---CCCcHHHHHHHHHHhH-----cCCCC--------ChHHHHHH
Q 044169 373 AKKQLKEMGKS---------ASSVSWNAQIAGFFR---NQKTEEAIEAFSQMVR-----NDAAC--------DEFTYSSI 427 (742)
Q Consensus 373 A~~~~~~~~~~---------~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 427 (742)
+...+...... .+...+......+.. .|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 22222222111 123444444554554 8999999999999887 32122 34577788
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH
Q 044169 428 LKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR 504 (742)
Q Consensus 428 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 504 (742)
...+...|+++.|...++.+.+.... ...+..+..+|...|++++|...|+++. +.+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999887533 8888999999999999999999999876 346678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
+|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..++.+|.+.|++++|.+.++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999852 334578888999999999999999999999763 3345678889999999999999999999876
Q ss_pred C----CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 585 P----IKPT----APIWRPLFAACRC---HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 585 ~----~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
. ..++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4 2222 4488899999999 999999999999999999999999999999999999999999999998864
Q ss_pred C
Q 044169 654 E 654 (742)
Q Consensus 654 ~ 654 (742)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.5e-20 Score=203.09 Aligned_cols=339 Identities=12% Similarity=0.024 Sum_probs=245.3
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHH
Q 044169 283 NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362 (742)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 362 (742)
+...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4566888888888888888888888888764 23356666666666666677777776666666654 223444555555
Q ss_pred HHHhCCCHHHHHHHHHhc-CCCCC-h---hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 363 MYSGLGEIWEAKKQLKEM-GKSAS-S---VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
.|.+.|++++|.+.|+++ ...|+ . ..|..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 555555555555555554 11222 2 3333333321111 111223346667888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888887764 5567888889999999999999999998876 4567899999999999999999999999998
Q ss_pred HcCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHH
Q 044169 515 VEGIRPTNS-TFLAV------------LSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 515 ~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
+. .|+.. .+..+ ..+|.+.|++++|.+.|+++.+...-.|. ..++..++.++.+.|++++|++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 74 56553 34433 78899999999999999999764222121 4578899999999999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH------------HHhcC-----CH
Q 044169 580 FISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM------------YAEAG-----LQ 640 (742)
Q Consensus 580 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------y~~~g-----~~ 640 (742)
.++++. .+.+...|..+..+|...|++++|...++++++++|+++.++..++.+ |...| +.
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 999864 344689999999999999999999999999999999999999999944 55555 44
Q ss_pred HHHHHHHHH
Q 044169 641 ADAEEQRKL 649 (742)
Q Consensus 641 ~~A~~~~~~ 649 (742)
+++.+.+++
T Consensus 397 ~~~~~~y~~ 405 (450)
T 2y4t_A 397 QEIIKAYRK 405 (450)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666654
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.5e-20 Score=208.03 Aligned_cols=427 Identities=9% Similarity=0.025 Sum_probs=217.3
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 044169 185 SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYI 264 (742)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (742)
.|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|.+.++.+++.. +.+...+..+..+|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 45555666666666677777766666543 3355666666666677777777777777776664 445666677777777
Q ss_pred hCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHC------CCCCCHHHHHHHHHHHhccCChhHH
Q 044169 265 KCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMRED------GIDPNEYTFTVALASCASLRNSHMG 338 (742)
Q Consensus 265 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a 338 (742)
..|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+...+. ..+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcChHHH
Confidence 777777777777533 222222233334444445556677777776432 22344333332221 2222211
Q ss_pred HHHHHHHHHhCCCCc-hHHHHHHHHHHHhC--------CCHHHHHHHHHhc-CCCCC--------hhhHHHHHHHHHhCC
Q 044169 339 YMFHAQVIKRGMALG-DFVGTAIVDMYSGL--------GEIWEAKKQLKEM-GKSAS--------SVSWNAQIAGFFRNQ 400 (742)
Q Consensus 339 ~~i~~~~~~~g~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~~~--------~~~~~~li~~~~~~g 400 (742)
...+.... ...+. ......+...+... |++++|...|+++ ...|+ ..+|..+...+...|
T Consensus 180 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11110000 00111 11222333332222 3566677766665 22333 123555556666677
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
++++|...|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777777776664 3445666666666667777777777776666553 3345556666666666666666666666
Q ss_pred hcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-
Q 044169 481 QLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP- 556 (742)
Q Consensus 481 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p- 556 (742)
+.. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.|+++.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 554 2334556666666666666666666666665531 22234555555566666666666666665543211001
Q ss_pred ---cHHHHHHHHHHHhhc----------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 557 ---EEAHYSCMVDLLGRA----------GKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 557 ---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
....+..+..+|.+. |++++|+..+++.. .+.+...|..+...+...|++++|...+++++++.|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 111122333344444 45555554444432 122344444444444445555555555555555444
Q ss_pred CCc
Q 044169 622 DDA 624 (742)
Q Consensus 622 ~~~ 624 (742)
+++
T Consensus 494 ~~~ 496 (537)
T 3fp2_A 494 TMD 496 (537)
T ss_dssp -CH
T ss_pred CcH
Confidence 433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=6.8e-20 Score=197.93 Aligned_cols=367 Identities=10% Similarity=0.017 Sum_probs=233.2
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHH
Q 044169 250 LSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVAL 326 (742)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 326 (742)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 55677889999999999999999999998754 467889999999999999999999999998864 34577888899
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCch---HHHHHHHHH------------HHhCCCHHHHHHHHHhc--CCCCChhhH
Q 044169 327 ASCASLRNSHMGYMFHAQVIKRGMALGD---FVGTAIVDM------------YSGLGEIWEAKKQLKEM--GKSASSVSW 389 (742)
Q Consensus 327 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~~--~~~~~~~~~ 389 (742)
..+...|++++|...++.+.+.. +.+. ..+..+... |...|++++|...|+++ ..+.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999998754 2233 555555443 55666666666666654 113345556
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC 469 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 469 (742)
..++..|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~---- 254 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV---- 254 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH----
Confidence 666666666666666666666655432 2234455555555555555555555555554432 1122222221000
Q ss_pred CCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHH
Q 044169 470 GSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-----NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 470 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
. ....+..+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.
T Consensus 255 ---~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 255 ---K------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp ---H------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---H------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0 0001122256666777777777777777663 444 23456666677777777777777
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH------------HHHcC-----C
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAA------------CRCHS-----D 605 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~------------~~~~g-----~ 605 (742)
++.+.+. .+.+...|..++.+|...|++++|.+.++++. ..| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 7776542 23345667777777777777777777776642 344 34445444422 22233 5
Q ss_pred HHHHHHHHHH-HHhcCCCCch----------hHHHHHHHHHhcCCHHHH
Q 044169 606 LKMAEFISKQ-ILELDPDDAA----------VYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 606 ~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~y~~~g~~~~A 643 (742)
.+++.+.+++ +++..|++.. .+..+..+|...|+.+++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5677888886 6777775321 455566666666655443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2e-19 Score=199.08 Aligned_cols=427 Identities=10% Similarity=-0.010 Sum_probs=274.8
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
.+.|++++|+..|+++....+. +..++..+..++...|+++.|...++.+++.. +.+..++..+.
T Consensus 36 ~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELDPN--------------EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCCC--------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 5556666666666665555433 45555555555555566666666665555543 33445555555
Q ss_pred HHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQ 239 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 239 (742)
.+|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++.+.... |+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~---------------------- 155 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG---------------------- 155 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc----------------------
Confidence 55555555555555554221 111112222233333333444444444443321 00
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcc---hHHHHHHHHHhC--------CCcchHHHHHH
Q 044169 240 LHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVI---SWTAIINGFKQH--------GDYEKPLRLVC 308 (742)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~ 308 (742)
......|+ ...+..|....+.+.+...+......+.. .+..+...+... |++++|+.+|+
T Consensus 156 -----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 156 -----RGSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp --------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 00011122 22333445556666666666555544333 233333222222 35667777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCCh
Q 044169 309 LMREDGIDPN-EYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASS 386 (742)
Q Consensus 309 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~ 386 (742)
++.+.. |+ ...+..+ ..++..+...+...|++++|...|++. ...|+.
T Consensus 227 ~~l~~~--p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~ 276 (537)
T 3fp2_A 227 SLLSAN--TVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276 (537)
T ss_dssp HHHC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHC--CCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc
Confidence 776542 22 1111111 123445666788899999999999987 335668
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 466 (742)
..|..+...|...|++++|+..|++..... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..+|
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 889999999999999999999999998864 3467789999999999999999999999998875 44568889999999
Q ss_pred HhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhcc---
Q 044169 467 NKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-----RPTNSTFLAVLSACSHS--- 535 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~--- 535 (742)
.+.|++++|...|+++. +.+...|..+...|...|++++|...|+++.+... ......+......+...
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999876 45667999999999999999999999999876421 11112344555677777
Q ss_pred -------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 044169 536 -------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT 589 (742)
Q Consensus 536 -------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 589 (742)
|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.|++.. ..|+
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999763 34456789999999999999999999999864 3444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=2.6e-17 Score=171.37 Aligned_cols=305 Identities=11% Similarity=0.060 Sum_probs=192.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHh
Q 044169 321 TFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFR 398 (742)
Q Consensus 321 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~ 398 (742)
.+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++. ..+.+...|..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34444445555555555555555555442 223444444445555555555555555443 102233444444455555
Q ss_pred CCCcHHHHHHHHHHhHcCCCC----ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044169 399 NQKTEEAIEAFSQMVRNDAAC----DEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 474 (742)
.|++++|...|++..+.. | +...+..+.... ....+..+...+...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHHH
Confidence 555555555555444331 2 111111110000 00011223567778888888
Q ss_pred HHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 475 AERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 475 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
|.+.|+++. +.+...|..+...+...|++++|+..++++.+. .+.+..++..+...+...|++++|.+.++...+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888765 445667778888888888888888888888874 2334567777888888888888888888888653
Q ss_pred cCCCCcHHHHH------------HHHHHHhhcCCHHHHHHHHHhCC-CCCC-HH----HHHHHHHHHHHcCCHHHHHHHH
Q 044169 552 YGILPEEAHYS------------CMVDLLGRAGKLEIALIFISNLP-IKPT-AP----IWRPLFAACRCHSDLKMAEFIS 613 (742)
Q Consensus 552 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~----~~~~l~~~~~~~g~~~~a~~~~ 613 (742)
. +.+...+. .++..+.+.|++++|.+.++++. ..|+ .. .+..+...+...|++++|...+
T Consensus 218 ~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 218 D--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp C--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 2 22222222 33677889999999999988754 2343 32 3445677888999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 614 KQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 614 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887643
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=3.9e-17 Score=170.04 Aligned_cols=328 Identities=11% Similarity=0.018 Sum_probs=246.7
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHH
Q 044169 283 NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362 (742)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 362 (742)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35578888999999999999999999998763 3457788888899999999999999999999875 446788899999
Q ss_pred HHHhCCCHHHHHHHHHhc-CCCC----ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 363 MYSGLGEIWEAKKQLKEM-GKSA----SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
.|...|++++|...|++. ...| +...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999988 3344 3334443321110 01122334445556666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
++|...++.+.+.. +.+...+..+..+|...|++++|...+++.. +.+...|..+...|...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 4456667777777888888888888887765 3456678888888888888888888888887
Q ss_pred HcCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHHHHHhhcCCHHHHHH
Q 044169 515 VEGIRPTN-STFL------------AVLSACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 515 ~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 579 (742)
+. .|+. ..+. .+...+...|++++|.+.++++.+...-.+.. ..+..+..+|...|++++|++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 74 4443 3222 23556888999999999999987643221111 235568889999999999999
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 580 FISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 580 ~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.+++.. ..| +...|..+...+...|++++|...++++++++|+++.....+..++...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 998764 334 78899999999999999999999999999999999999888888765543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.5e-17 Score=168.30 Aligned_cols=287 Identities=10% Similarity=-0.009 Sum_probs=218.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 351 ALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 351 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+.+..++..+...+...|++++|.++|+++ ..+.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555666677777778888888877776 214455667777788888888888888888887753 33566777777
Q ss_pred HHhcCCC-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH
Q 044169 429 KACSLLP-SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR 504 (742)
Q Consensus 429 ~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 504 (742)
..+...| ++++|...++.+.+.. +.+...+..+..+|...|++++|...|++.. +.+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8888888888887654 4456778888888888888888888888775 344567777888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG-------ILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999998888742 33456788888888888999999988888876321 133456788888888899999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCH
Q 044169 578 LIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY-AEAGLQ 640 (742)
Q Consensus 578 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~ 640 (742)
++.+++.. .+.+...|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888754 2345777888888888899999999999999999998888888888887 455554
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1e-14 Score=165.91 Aligned_cols=378 Identities=12% Similarity=0.086 Sum_probs=269.2
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 044169 221 YSTMLAICGSLSAIDEGKQLHAQTMKLQ--YLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHG 298 (742)
Q Consensus 221 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 298 (742)
....+++|...|.+.+|.++++...-.+ +..+....+.|+.+..+. +..+..++.++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3455667777788888888887776332 112345556666666665 4455555554443222 444667778888
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Q 044169 299 DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLK 378 (742)
Q Consensus 299 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 378 (742)
.+++|..+|++.. -.....+.++. ..+++++|.++.+.+ .++.+|..+..++...|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888888852 11122233322 567788887777654 347788888888999999999998887
Q ss_pred hcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhH
Q 044169 379 EMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHV 458 (742)
Q Consensus 379 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~ 458 (742)
+. .|...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++...
T Consensus 1130 KA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1130 KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred hc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 74 567778888888999999999999888776654 33333335788888888877544332 1 345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLV 538 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 538 (742)
+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 667888888899999999999885 48888999999999999999988876 3457888888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH--SDLKMAEFISK 614 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~ 614 (742)
..|...... +..+...+..++..|.+.|.+++|+.+++... .++ ....|.-|...+.+. ++..++.+.|.
T Consensus 1267 ~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888876543 33466677889999999999999999998753 333 355565565665554 45666777777
Q ss_pred HHHhcCC-----CCchhHHHHHHHHHhcCCHHHHHH
Q 044169 615 QILELDP-----DDAAVYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 615 ~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~ 645 (742)
.-+...| ++...|..+..+|.+.|+|+.|..
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666655 678889999999999999999984
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=4.1e-14 Score=161.16 Aligned_cols=421 Identities=13% Similarity=0.119 Sum_probs=262.6
Q ss_pred ChhhHHHHHHhhccccchHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHH
Q 044169 116 DKQFVIEVLSYCSREECLELGRRYHALITKTA--VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGY 193 (742)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 193 (742)
++.-.....+++...|.+.++..+++.++-.+ +..+....+.|+....+. +.........+....+ ..-+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 44445566666667777777777777766332 113445566666666555 3344444444433222 34456667
Q ss_pred HhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 044169 194 AKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAE 273 (742)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (742)
...|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 777888888888877521 1111222222 456777777777653 34667778888888888888888
Q ss_pred HHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 044169 274 SVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALG 353 (742)
Q Consensus 274 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 353 (742)
+.|.+. .|...|..++.++.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 888654 666777778888888888888888887766653 33333334777777777776533332 1 334
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC
Q 044169 354 DFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433 (742)
Q Consensus 354 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 433 (742)
...+..+...|...|++++|..+|...+ .|..+...|++.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 4555667778888888888888888753 7888888888888888888888764 355777777778888
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHc--CCHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA---DVVSWNSMIKAYSQN--GRARKAII 508 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~--g~~~~A~~ 508 (742)
.|++..|...... +..+...+..++..|.+.|.+++|..+++..... ....|+-|...|++. ++..++++
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7777777765443 2334555667788888888888888888766532 333566666666654 23444444
Q ss_pred HHHHHHHcCCCC------CHHHHHHHHHHHhccCcHHHHHHHH--------HHh--HHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 509 LFEKMVVEGIRP------TNSTFLAVLSACSHSGLVQDGQKVF--------ESM--VKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 509 ~~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~~--------~~m--~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
+|..-.. ++| +...|.-+.-.|.+.|+++.|.... +.- .....-..+.+.|...+..|...+
T Consensus 1338 ~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1338 LFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4443221 222 2345777777777778887776321 110 000112345666666666666555
Q ss_pred ---------------CHHHHHHHHHhC
Q 044169 573 ---------------KLEIALIFISNL 584 (742)
Q Consensus 573 ---------------~~~~A~~~~~~~ 584 (742)
+.+.+.++|.+.
T Consensus 1416 P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1416 PLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred hHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 666666666643
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.4e-16 Score=163.81 Aligned_cols=266 Identities=12% Similarity=0.033 Sum_probs=229.4
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSL 462 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l 462 (742)
+.+...+..++..+...|++++|+++|+++.... +.+...+..++..+...|+.++|...+..+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566778888899999999999999999998864 3345566677788889999999999999998874 5567888999
Q ss_pred HHHHHhcC-CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044169 463 IEAYNKCG-SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLV 538 (742)
Q Consensus 463 i~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 538 (742)
...|...| ++++|.+.|++.. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999876 3456789999999999999999999999999852 33356777788999999999
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHcCCHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I----------KPTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~g~~~ 607 (742)
++|.+.++++.+ ..+.+...+..++.+|.+.|++++|...+++.. . +.+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999975 334567789999999999999999999998753 0 334678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999876643
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=3.2e-15 Score=162.97 Aligned_cols=366 Identities=11% Similarity=0.014 Sum_probs=264.2
Q ss_pred ChhHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcchHHHHHHHHHh----CCCcchHHHHHHHHHHCCCCCCHHHH
Q 044169 252 KTAVSNALLTMYIK----CGMMEDAESVFEGLVQ-RNVISWTAIINGFKQ----HGDYEKPLRLVCLMREDGIDPNEYTF 322 (742)
Q Consensus 252 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 322 (742)
+......|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555555555 5666666666655433 344555556666665 566666666666665543 33444
Q ss_pred HHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHhcCCCCChhhHHHHHH
Q 044169 323 TVALASCAS----LRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSG----LGEIWEAKKQLKEMGKSASSVSWNAQIA 394 (742)
Q Consensus 323 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~ 394 (742)
..+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++.-...+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444 556666666666666654 34555566666665 6788888888887632456777888888
Q ss_pred HHHh----CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044169 395 GFFR----NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL----LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466 (742)
Q Consensus 395 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 466 (742)
.|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8877 788888988888887765 45566666666654 788899999988887754 445666777778
Q ss_pred Hh----cCCHHHHHHHHHhcC-CCCchHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044169 467 NK----CGSWEDAERVFSQLT-AADVVSWNSMIKAYSQN-----GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG 536 (742)
Q Consensus 467 ~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 536 (742)
.. .++.++|.+.|++.. ..+...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 889999999998876 34566788888888887 89999999999998864 3456666666776655
Q ss_pred ---cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 044169 537 ---LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSD 605 (742)
Q Consensus 537 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 605 (742)
++++|.+.|++..+. .+...+..|..+|.. .+++++|++.|++.....++..+..+...|.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999998763 467788888999988 89999999999987645578888888888888 899
Q ss_pred HHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 044169 606 LKMAEFISKQILELDPD---DAAVYVTLSNMYAE 636 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 636 (742)
.++|...++++.+.+|+ ++.....|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 77777777776654
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.7e-17 Score=168.55 Aligned_cols=347 Identities=11% Similarity=0.077 Sum_probs=163.1
Q ss_pred HhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 044169 264 IKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHA 343 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 343 (742)
-+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 4899999999999999999999965 3677899999999999999999999888
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHH
Q 044169 344 QVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFT 423 (742)
Q Consensus 344 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 423 (742)
...+. .+++.+.+.++.+|.++|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 77764 4557889999999999999999988885 577789999999999999999999999987 47
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Q 044169 424 YSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRA 503 (742)
Q Consensus 424 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (742)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 899999999999999999999987 378899999999999999999988777655 4444455688999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCC------cHHHHHHHHHHHhhcCCHH
Q 044169 504 RKAIILFEKMVVEGIRPTNSTFLAVLSACSH--SGLVQDGQKVFESMVKEYGILP------EEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~~~g~~~ 575 (742)
++|+.+++...... +-....|+.+.-++++ .+++.+.++.|. +.-.++| +...|..++..|...++++
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999999988542 2333456666555554 445555555543 2234444 3557899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 576 IALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 576 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
.|...+-+-+ |+.---..+.....+-.+.+.--++..-.++..| ...+.|..++...=+...+.+++++
T Consensus 300 ~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 300 NAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 9988765543 2222222333444455554444444444444433 3345555555444455555555444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=7.7e-17 Score=168.72 Aligned_cols=280 Identities=10% Similarity=-0.024 Sum_probs=223.5
Q ss_pred HHhCCCHHHHHH-HHHhc-CC---CC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC
Q 044169 364 YSGLGEIWEAKK-QLKEM-GK---SA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 364 ~~~~g~~~~A~~-~~~~~-~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 436 (742)
+...|++++|.+ .|++. .. .| +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888887 77754 11 12 35678888999999999999999999998864 4467788888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CchHHHH---------------HHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVVSWNS---------------MIKAYS 498 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~---------------li~~~~ 498 (742)
+++|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++. .| +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998875 5577888999999999999999999999876 22 2222221 133344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPT---NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
..|++++|+..++++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999985 454 678899999999999999999999999763 3445778999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCCHHH
Q 044169 576 IALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD-----------AAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 576 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~ 642 (742)
+|++.++++. .+.+...+..+...+...|++++|...+++++++.|++ ..++..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999864 34468889999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHH
Q 044169 643 AEEQRKL 649 (742)
Q Consensus 643 A~~~~~~ 649 (742)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988753
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=6.5e-17 Score=165.76 Aligned_cols=344 Identities=12% Similarity=0.093 Sum_probs=120.1
Q ss_pred HhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHH
Q 044169 163 AKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHA 242 (742)
Q Consensus 163 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 242 (742)
-+.|++++|.+.+++++.++ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999653 577899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHH
Q 044169 243 QTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTF 322 (742)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 322 (742)
...+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45678889999999999999999988864 67779999999999999999999999876 245
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCc
Q 044169 323 TVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKT 402 (742)
Q Consensus 323 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 402 (742)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+ ....++..|.+.|++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad--~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH--HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh--hHHHHHHHHHHCCCH
Confidence 55555555555555555555444 1344455555555555555555443333221111 122344444444444
Q ss_pred HHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHHH
Q 044169 403 EEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK--CGSWEDAERVFS 480 (742)
Q Consensus 403 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~ 480 (742)
++|+.+++. ..... +-....|+-|.-+|++ -+++.+..+.|.
T Consensus 224 eEai~lLe~-----------------------------------aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 224 EELITMLEA-----------------------------------ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHH-----------------------------------HTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHH-----------------------------------HhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444444444 43322 2223444444444443 234455555554
Q ss_pred hcC---C-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 481 QLT---A-----ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT---NSTFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 481 ~~~---~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
.-. + .+...|.-+...|.+.++++.|... |.+. .|+ ...|.-++.--....-+-+|+.++-
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--- 339 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL--- 339 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---
Confidence 332 1 2556788888888888888877763 4442 233 2334433332222223334444432
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 550 KEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
. ..|. ..+-|+.++...=+...+..+|++..
T Consensus 340 ~---~~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 340 E---FKPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp H---HCGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred h---cCHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 1 1232 24555555555556666666665543
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.2e-14 Score=160.25 Aligned_cols=412 Identities=7% Similarity=0.023 Sum_probs=259.1
Q ss_pred ChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHHH-
Q 044169 217 NHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--RNVISWTAIING- 293 (742)
Q Consensus 217 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~- 293 (742)
|...|..++.. .+.|++++|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55667777763 56777888888888777653 55566777777777777888888888877754 555566666542
Q ss_pred HHhCCCcchHHH----HHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 294 FKQHGDYEKPLR----LVCLMRE-DGIDPN-EYTFTVALASCAS---------LRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 294 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
....|+.++|.+ +|++... .|..|+ ...|...+....+ .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 234566666655 5555433 244332 3334433333322 355555555555555421111112222
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHh------HcC---CCCCh--------
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMV------RND---AACDE-------- 421 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~~-------- 421 (742)
.........|. ..+..++. .+.+++.+|..++.++. +.. ++|+.
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 21111100000 00000000 02234555655555421 111 23331
Q ss_pred HHHHHHHHHhcC----CCCH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 044169 422 FTYSSILKACSL----LPSL----ATCEQIHSRIVKSKFESNVHVGSSLIEAYNK-------CGSWE-------DAERVF 479 (742)
Q Consensus 422 ~t~~~ll~~~~~----~g~~----~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~ 479 (742)
..|...+..... .++. ..+..+|+.+.... +.+...|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 233333322211 1232 36677888877753 5567788888887775 68876 899999
Q ss_pred HhcCC---C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 480 SQLTA---A-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 480 ~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
++... | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|.++|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 87763 3 466899999999999999999999999998 46653 46888888888899999999999998753
Q ss_pred CCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----h
Q 044169 554 ILPEEAHYSCMVDL-LGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA----V 626 (742)
Q Consensus 554 ~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~ 626 (742)
.+.+...|...+.. +...|+.++|..+|++.. ..| +...|..++....+.|+.++|..+++++++..|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 12223333332222 346899999999998753 334 5888999999999999999999999999998776655 7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...+......|+.+.+.++.+++.+.-
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7778888888999999999988887533
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=5.6e-15 Score=162.78 Aligned_cols=411 Identities=12% Similarity=0.103 Sum_probs=291.0
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044169 181 LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALL 260 (742)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 260 (742)
.|...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778999998 588999999999999998762 4466789999999999999999999999998774 5777777777
Q ss_pred HH-HHhCCChHHHHH----HHhccC-----C-CCcchHHHHHHHHHh---------CCCcchHHHHHHHHHHCCCCCCHH
Q 044169 261 TM-YIKCGMMEDAES----VFEGLV-----Q-RNVISWTAIINGFKQ---------HGDYEKPLRLVCLMREDGIDPNEY 320 (742)
Q Consensus 261 ~~-~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 320 (742)
.. ....|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 53 345688877765 666542 1 356678888877665 688999999999998731111122
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHh-------cC-----CCCC---
Q 044169 321 TFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKE-------MG-----KSAS--- 385 (742)
Q Consensus 321 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~-----~~~~--- 385 (742)
.|..........+. .+...++. .+.+++..|..++.. +. .+|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 33222111100110 01111111 122344555544443 11 1232
Q ss_pred -----hhhHHHHHHHHHhC----CCc----HHHHHHHHHHhHcCCCCChHHHHHHHHHhcC-------CCCHH-------
Q 044169 386 -----SVSWNAQIAGFFRN----QKT----EEAIEAFSQMVRNDAACDEFTYSSILKACSL-------LPSLA------- 438 (742)
Q Consensus 386 -----~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~------- 438 (742)
...|...+...... ++. .++..+|++..... +-+...|......+.. .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 24566555433332 232 37788898887752 3456677777766664 78876
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-Cc-hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 439 TCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DV-VSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 439 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|..+|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 889999988863335568899999999999999999999999876 34 33 489999999999999999999999999
Q ss_pred HcCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CC
Q 044169 515 VEGIRPT-NSTFLAVLSA-CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I---KP 588 (742)
Q Consensus 515 ~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p 588 (742)
+. .|+ ...|...... +...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.. . .|
T Consensus 384 ~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 384 ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 75 343 3333332222 335899999999999998743 3457889999999999999999999999864 2 23
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 589 --TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 589 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
....|...+.....+|+.+.+..+.+++.+..|+
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2458999999999999999999999999999884
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=4.1e-14 Score=154.15 Aligned_cols=354 Identities=12% Similarity=0.042 Sum_probs=297.6
Q ss_pred CCCcchHHHHHHHHHh----CCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCC
Q 044169 281 QRNVISWTAIINGFKQ----HGDYEKPLRLVCLMREDGIDPNEYTFTVALASCAS----LRNSHMGYMFHAQVIKRGMAL 352 (742)
Q Consensus 281 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~ 352 (742)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998874 55667777777777 899999999999998876
Q ss_pred chHHHHHHHHHHHh----CCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCCcHHHHHHHHHHhHcCCCCChHHH
Q 044169 353 GDFVGTAIVDMYSG----LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFR----NQKTEEAIEAFSQMVRNDAACDEFTY 424 (742)
Q Consensus 353 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 424 (742)
+...+..|...|.. .++.++|...|++.-...+...+..+...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888888 88999999999998435577888888888887 889999999999998875 66777
Q ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCchHHHHHHH
Q 044169 425 SSILKACSL----LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK----CGSWEDAERVFSQLT-AADVVSWNSMIK 495 (742)
Q Consensus 425 ~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~ 495 (742)
..+...+.. .++.++|...++...+.+ +...+..+..+|.. .+++++|.+.|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 899999999999998865 55677788888886 899999999999876 456677888888
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 496 AYSQ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS-----GLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 496 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
.|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998754 445666677777776 8999999999998763 24567788888
Q ss_pred HHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---
Q 044169 567 LLGRAG---KLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE--- 636 (742)
Q Consensus 567 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 636 (742)
+|.+.| ++++|++.|++.....++..+..+...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888767 889999999987645688899999999988 899999999999999875 68899999999999
Q ss_pred -cCCHHHHHHHHHHHHhCCC
Q 044169 637 -AGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 637 -~g~~~~A~~~~~~m~~~~~ 655 (742)
.+++++|.+.+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988774
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.4e-16 Score=166.72 Aligned_cols=259 Identities=10% Similarity=-0.014 Sum_probs=213.9
Q ss_pred ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044169 385 SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIE 464 (742)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 464 (742)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668889999999999999999999998864 4467888999999999999999999999998875 456788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC-----------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 044169 465 AYNKCGSWEDAERVFSQLTA--AD-----------VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP---TNSTFLAV 528 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 528 (742)
+|.+.|++++|...|+++.. |+ ...+..+...+...|++++|+..++++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 99999999999999998762 21 223344578899999999999999999985 44 46789999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|.+.|+++.+. .+.+...|..++.+|.+.|++++|++.|+++. ..| +..+|..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999763 34567789999999999999999999998864 344 588899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 607 KMAEFISKQILELDPD------------DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
++|...+++++++.|+ +..++..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998876 367899999999999999999887654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=5e-15 Score=148.76 Aligned_cols=272 Identities=10% Similarity=-0.015 Sum_probs=217.7
Q ss_pred HHHHhCCCHHHHHHHHHhcC-CCCCh--hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHH
Q 044169 362 DMYSGLGEIWEAKKQLKEMG-KSASS--VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLA 438 (742)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 438 (742)
.-....|+++.|+..+++.. ..|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456789999999988763 23332 3445678899999999999987654 23567778888999999999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 044169 439 TCEQIHSRIVKSKFES-NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG 517 (742)
Q Consensus 439 ~a~~i~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 517 (742)
.|.+.++.+...+..| +...+..+..+|...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999998876444 567777888999999999999999998 567789999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHH
Q 044169 518 IRPTNSTF---LAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPI 592 (742)
Q Consensus 518 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 592 (742)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++.. ..| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5665322 22334445669999999999999874 45678889999999999999999999999864 344 6888
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 044169 593 WRPLFAACRCHSDLKM-AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
|..++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999998865 6789999999999888654 4566667777665544
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=7.9e-16 Score=157.91 Aligned_cols=260 Identities=7% Similarity=-0.068 Sum_probs=198.3
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666777777777777777766653 2355566666667777777777777777776653 4456667777777
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCchHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLT---AADVVSWNSM--------------IK-AYSQNGRARKAIILFEKMVVEGIRPTNSTFLA 527 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 527 (742)
|...|++++|.+.|+++. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 777778777777777665 1222233322 22 3677889999999999998853 335678888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSD 605 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 605 (742)
+...+...|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. .+.+...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998763 34457788999999999999999999998864 33468889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 606 LKMAEFISKQILELDPD------------DAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+++|...++++++..|+ ++.++..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6889999999999999999999988644
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=2.2e-15 Score=151.38 Aligned_cols=247 Identities=9% Similarity=0.049 Sum_probs=203.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCCh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDE--FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
|+-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999999876543 3443 3556678899999999999876644 23667788899999999999
Q ss_pred CHHHHHHHHHhcC----CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044169 471 SWEDAERVFSQLT----AA-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 471 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455777788999999999999999987 456678888999999999999999999
Q ss_pred HHhHHhcCCCCcHHH---HHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 546 ESMVKEYGILPEEAH---YSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 546 ~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
+.+.+. .|+... ...++..+...|++++|..+|+++. .+.+...|+.+..++.+.|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999764 355331 2334455666799999999999875 45578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 044169 621 PDDAAVYVTLSNMYAEAGLQAD-AEEQRKLMKMKE 654 (742)
Q Consensus 621 p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~~~ 654 (742)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 568888887644
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=2e-15 Score=157.86 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=196.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHH
Q 044169 420 DEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKA 496 (742)
Q Consensus 420 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 496 (742)
+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888889999999999999999999875 5678899999999999999999999999886 4467799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTNS-----------TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
|...|++++|+..++++.+. .|+.. .+..+...+...|++++|.++++++.+...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 44432 233457789999999999999999987533323688999999
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++++|++.++++. .+.+..+|..+..++...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999864 3446889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 044169 644 EEQRKLMKMKE 654 (742)
Q Consensus 644 ~~~~~~m~~~~ 654 (742)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999987643
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.7e-14 Score=156.55 Aligned_cols=365 Identities=11% Similarity=0.017 Sum_probs=198.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhccCC------------CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC-----
Q 044169 252 KTAVSNALLTMYIKCGMMEDAESVFEGLVQ------------RNVISWTAIINGFKQHGDYEKPLRLVCLMREDG----- 314 (742)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----- 314 (742)
....||.|...|...|+.++|++.|++..+ ...++|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 356678888888888888888888765421 134567777777777888888877777664320
Q ss_pred -CCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHH
Q 044169 315 -IDP-NEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWN 390 (742)
Q Consensus 315 -~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~ 390 (742)
..+ ...++.....++... ..+++++|.+.|++. .. +.+...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~---------------------------------~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKC---------------------------------GGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHH---------------------------------CTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHH---------------------------------ccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 011 112222222222211 123345555555543 11 22233333
Q ss_pred HHHHH---HHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044169 391 AQIAG---FFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKAC----SLLPSLATCEQIHSRIVKSKFESNVHVGSSLI 463 (742)
Q Consensus 391 ~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 463 (742)
.+... +...++.++|++.+++..+.. +.+..++..+...+ ...++.++|.+.++...+.. +.+..++..+.
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 33222 233455556666666555432 12233333333222 22345556666666555543 33455556666
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHcCCCCC
Q 044169 464 EAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQ-------------------NGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
..|.+.|++++|...|++.. +.+..+|..+...|.. .+.+++|...+++..+. .|+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCc
Confidence 66666666666666666554 2233444444444322 23466788888888774 444
Q ss_pred H-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHHH-HHhhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 044169 522 N-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMVD-LLGRAGKLEIALIFISNLP-IKPTAPIWRPL 596 (742)
Q Consensus 522 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 596 (742)
. .++..+...+...|++++|++.|++..+. ...+.. ..+..+.. .+...|+.++|+..+++.. ..|+...+...
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3 56778888999999999999999988752 222221 12333333 3457789999999998753 56664433322
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccE
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSW 663 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 663 (742)
...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+.......+|
T Consensus 412 ---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 412 ---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 3456677888899999999999999999999999999999999988766443333344
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=2e-15 Score=157.83 Aligned_cols=255 Identities=11% Similarity=0.017 Sum_probs=205.0
Q ss_pred HHhCCCcHHHHH-HHHHHhHcCC---CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 396 FFRNQKTEEAIE-AFSQMVRNDA---ACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 396 ~~~~g~~~~A~~-~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
+...|++++|++ .|++...... ..+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444588899998 8886654321 1134567788889999999999999999999874 5567889999999999999
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHH---------------HHHHH
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLA---------------VLSAC 532 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~a~ 532 (742)
+++|.+.|+++. +.+..+|..+...|...|++++|+..++++.+. .|+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999876 456779999999999999999999999999985 44432 2211 23334
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
...|++++|...++++.+...-.++..++..++.+|.+.|++++|++.++++. .+.+..+|..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48899999999999998753332357889999999999999999999998864 3446889999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 611 FISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
..+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.2e-13 Score=149.92 Aligned_cols=384 Identities=10% Similarity=0.012 Sum_probs=196.7
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhC--------CCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhC------
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGI--------DVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQ------ 248 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 248 (742)
...||.|...+...|++++|++.|++..+. .-+....+|..+..++...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777778888888877765431 011223456666666666666666666666554421
Q ss_pred C-CCChhHHHHHHHHHHhC--CChHHHHHHHhccCC--C-CcchHHHHHHH---HHhCCCcchHHHHHHHHHHCCCCCCH
Q 044169 249 Y-LSKTAVSNALLTMYIKC--GMMEDAESVFEGLVQ--R-NVISWTAIING---FKQHGDYEKPLRLVCLMREDGIDPNE 319 (742)
Q Consensus 249 ~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 319 (742)
. .....++..+..++.+. +++++|...|++..+ | +...+..+... +...++.++|++.+++..+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~------- 203 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR------- 203 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-------
Confidence 0 01122333333333322 235555555554422 2 22233332222 2233444455555444433
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHH----hCCCHHHHHHHHHhc--CCCCChhhHHHHH
Q 044169 320 YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYS----GLGEIWEAKKQLKEM--GKSASSVSWNAQI 393 (742)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~--~~~~~~~~~~~li 393 (742)
.. +.+..++..+...+. ..|+.++|.+.+++. ..+.+...+..+.
T Consensus 204 ----------------------------l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 204 ----------------------------LN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp ----------------------------HC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred ----------------------------cC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 22 112223333322222 235566677777654 1155677788889
Q ss_pred HHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044169 394 AGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWE 473 (742)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 473 (742)
..|...|++++|+..|++..+.. +-+..++..+...+...+. . ..... ...........+..+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~-----~----~~~~~-------~~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVF-----Q----VMNLR-------ENGMYGKRKLLELIG 317 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH-----H----HHHC-------------CHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH-----H----hhhHH-------HHHHHHHHHHHhhHH
Confidence 99999999999999999887753 2234455554443321100 0 00000 000111111223456
Q ss_pred HHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHH
Q 044169 474 DAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS--TFLAVLS-ACSHSGLVQDGQKVFES 547 (742)
Q Consensus 474 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~ 547 (742)
+|...|++.. +.+..+|..+...|...|++++|+..|++..+....|... .+..+.. .....|++++|++.|++
T Consensus 318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777654 4566788999999999999999999999999853333221 2233322 34577999999999998
Q ss_pred hHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 548 MVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 548 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
..+ +.|+........ +.+.+++++.. .+.+..+|..+...+...|++++|++.++++++++|.+|.
T Consensus 398 al~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 398 GVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 865 445543322222 23333443321 2346788999999999999999999999999999998887
Q ss_pred hHHHHH
Q 044169 626 VYVTLS 631 (742)
Q Consensus 626 ~~~~l~ 631 (742)
+...+|
T Consensus 466 a~~~~G 471 (472)
T 4g1t_A 466 ASSWNG 471 (472)
T ss_dssp ------
T ss_pred HhhcCC
Confidence 766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=1.4e-13 Score=141.10 Aligned_cols=264 Identities=8% Similarity=0.021 Sum_probs=147.6
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 044169 284 VISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDM 363 (742)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 363 (742)
...|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3445566666677777777777777766542 1233334434444444444444444444433321
Q ss_pred HHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH--------------HH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI--------------LK 429 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~ 429 (742)
+.+...|..+...|...|++++|+..++++...... +...+..+ ..
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHh
Confidence 334455556666666666666666666666554211 11111111 11
Q ss_pred -HhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHH
Q 044169 430 -ACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARK 505 (742)
Q Consensus 430 -~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 505 (742)
.+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.++++. +.+...|..+...|...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 2556667777777777766654 3355666667777777777777777776654 3345566666777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----------CcHHHHHHHHHHHhhcCCHH
Q 044169 506 AIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL----------PEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----------p~~~~~~~l~~~~~~~g~~~ 575 (742)
|...++++.+.. +.+...+..+...+...|++++|.+.++++.+...-. .+...+..+..++.+.|+++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 777777766641 2234556666666677777777777776665421110 02445566666666666666
Q ss_pred HHHHHHHhC
Q 044169 576 IALIFISNL 584 (742)
Q Consensus 576 ~A~~~~~~~ 584 (742)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 666666543
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.9e-14 Score=137.04 Aligned_cols=215 Identities=13% Similarity=0.026 Sum_probs=156.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----chHHHHHHH
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--A----D----VVSWNSMIK 495 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~ 495 (742)
.+...+...|++++|...+..+.+.. .+...+..+..+|...|++++|.+.|++... | + ...|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33334444444444444444444443 3444555555555555555555555555431 1 1 456777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
.|...|++++|+..|+++.+. .|+. ..+...|++++|.+.++.+.+ ..+.+...+..++..+...|+++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHH
Confidence 888888888888888888873 5553 345566788899999888865 22334557888889999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 576 IALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 576 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+|++.+++.. .+.+...|..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999998764 34468889999999999999999999999999999999999999999999999999999999888753
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.6e-16 Score=171.00 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=121.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHhc------CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH
Q 044169 352 LGDFVGTAIVDMYSGLGEIWEAKKQLKEM------GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS 425 (742)
Q Consensus 352 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 425 (742)
.-..+|++||++|++.|++++|.++|++| ++.||+++||+||.+||+.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34567888888999999999999888665 458999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CchHHHHHHHHHHH
Q 044169 426 SILKACSLLPS-LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA-----DVVSWNSMIKAYSQ 499 (742)
Q Consensus 426 ~ll~~~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 499 (742)
++|.++++.|+ .+.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999987 4789999999999999999999999998887776666555554444321 12334445555555
Q ss_pred cC
Q 044169 500 NG 501 (742)
Q Consensus 500 ~g 501 (742)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=168.41 Aligned_cols=127 Identities=10% Similarity=0.126 Sum_probs=104.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-------AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTF 525 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 525 (742)
..-..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445688888888888888888888887653 678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 044169 526 LAVLSACSHSGL-VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIF 580 (742)
Q Consensus 526 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 580 (742)
+++|.++++.|+ .++|.++|++|.+ .|+.||..+|++++....+.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999998888887 4788899999966 58999999998888777666555544444
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=5.1e-14 Score=134.95 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=155.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAV 528 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 528 (742)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..+++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566778888888999999999999998875 346678888999999999999999999999884 5654 678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 044169 529 LSACSHS-----------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPL 596 (742)
Q Consensus 529 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 596 (742)
..++... |++++|+..+++..+. -+.+...+..+..+|...|++++|++.|++.. ...++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8889888 9999999999999763 23356788899999999999999999998864 12778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.2e-13 Score=134.16 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CCc----hhHHH
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ESN----VHVGS 460 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~----~~~~~ 460 (742)
..|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...+..+.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777778888888888888877766 6677777777788888888888888877765421 111 57778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCc
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGL 537 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 537 (742)
.+...|.+.|++++|...|++.. .++ ...+...|++++|...++++... .|+. ..+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 88888889999999999888876 333 24566778899999999998874 5554 568888888999999
Q ss_pred HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044169 538 VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQ 615 (742)
Q Consensus 538 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 615 (742)
+++|.+.++++.+. .+.+...+..++.+|.+.|++++|++.+++.. .+.+...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998763 34467788899999999999999999998764 334588899999999999999999999999
Q ss_pred HHhcC------CCCchhHHHHHH
Q 044169 616 ILELD------PDDAAVYVTLSN 632 (742)
Q Consensus 616 ~~~~~------p~~~~~~~~l~~ 632 (742)
++++. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99998 877766666554
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.6e-13 Score=135.29 Aligned_cols=241 Identities=11% Similarity=-0.024 Sum_probs=188.3
Q ss_pred hCCCcHHHHHHHHHHhHcCCC---CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044169 398 RNQKTEEAIEAFSQMVRNDAA---CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474 (742)
Q Consensus 398 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 474 (742)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456778888888888775321 135567777888888888888888888888764 4567888889999999999999
Q ss_pred HHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 475 AERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 475 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
|.+.|++.. +.+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998876 346778999999999999999999999999984 566655555556667789999999999888763
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 552 YGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.+++...+ .++..+...++.++|++.+++.. ..|+ ...|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 47778888899999999998765 2222 567888999999999999999999999999997755
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66888899999998765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=4.6e-13 Score=133.27 Aligned_cols=244 Identities=14% Similarity=0.049 Sum_probs=123.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC--hHHHHHHHHHhcCC
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD--EFTYSSILKACSLL 434 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~ 434 (742)
.....+...|++++|...|++. .. +.+...|..+...|...|++++|+..|++....+..|+ ...|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3445555666666666666554 11 22334555556666666666666666666555221111 11244444445555
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 435 PSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 435 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
|++++|...++.+.+.. +.+.. .|..+...|...|++++|+..|++..
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLD-------------------------------MYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTH-------------------------------HHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred ccHHHHHHHHHHHHhcC-cccHH-------------------------------HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 55555555555444432 22333 44444444455555555555554444
Q ss_pred HcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCC----C
Q 044169 515 VEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK---LEIALIFISNLP----I 586 (742)
Q Consensus 515 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~ 586 (742)
+. .|+. ..+..+...+...+++++|.+.|+++.+. .+.+...+..+..++...|+ +++|...+++.. .
T Consensus 136 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 136 RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 32 2222 23333331222233555555555555432 11223344444444544444 444444443321 1
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 587 KPT------APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 587 ~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 122 2466777888889999999999999999999999988888777665544
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=3.6e-12 Score=122.48 Aligned_cols=197 Identities=11% Similarity=0.032 Sum_probs=149.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA 531 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 531 (742)
+...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566677777778888888888877665 3455677778888888888888888888887742 3345677777788
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 044169 532 CSHS-GLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 532 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 607 (742)
+... |++++|.+.++.+.+ .+..|+ ...+..++.++...|++++|++.++++. .+.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888765 223333 5567778888888888888888887653 2335777888888888888888
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 608 MAEFISKQILELDP-DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 608 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 88888888888888888888888888887643
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=2.8e-12 Score=137.54 Aligned_cols=368 Identities=12% Similarity=0.048 Sum_probs=179.1
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---HHHHHHHhccCCCCcchHHHHHHHHHhCC-----
Q 044169 227 ICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMM---EDAESVFEGLVQRNVISWTAIINGFKQHG----- 298 (742)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 298 (742)
.+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344455556666665555544 222233344445555555 66666666665555555665655444444
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC----CHH
Q 044169 299 DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSH---MGYMFHAQVIKRGMALGDFVGTAIVDMYSGLG----EIW 371 (742)
Q Consensus 299 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~ 371 (742)
++++|+..|++..+.|... .+..+-..+...+..+ .+.+.+......|. ......|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 4556666666666654322 3333333333332222 22222222222221 223333344444443 233
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhCC---CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 372 EAKKQLKEMGKSASSVSWNAQIAGFFRNQ---KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 372 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.+..+++... ..+...+..+...|...| +.++|+..|++..+.|
T Consensus 163 ~a~~~~~~a~-~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------------------------------- 209 (452)
T 3e4b_A 163 DVERICKAAL-NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------------------------------- 209 (452)
T ss_dssp HHHHHHHHHT-TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------------------------------
Confidence 3333333332 333335555555555555 5555555555554443
Q ss_pred HhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCchHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCC
Q 044169 449 KSKFESNVHVGSSLIEAYNKC----GSWEDAERVFSQLTAADVVSWNSMIKA-Y--SQNGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
+++...+..|..+|... +++++|.+.|++....++..+..|... | ...+++++|+..|++..+.| +
T Consensus 210 ----~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 210 ----TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp ----CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 23333333344444333 456666666665553344455555555 3 34677888888888777765 4
Q ss_pred HHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHH
Q 044169 522 NSTFLAVLSACSHSG-----LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPTAPI 592 (742)
Q Consensus 522 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~ 592 (742)
...+..+...|. .| ++++|.+.|++.. .-+...+..|..+|.. ..++++|.+.|++.....+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 455555555555 44 7888888877663 3455666667776665 3478888888877653445555
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 044169 593 WRPLFAACRC----HSDLKMAEFISKQILELDPDDAAVYVTLSNMY--AEAGLQADAEEQRKLMK 651 (742)
Q Consensus 593 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~A~~~~~~m~ 651 (742)
...|...|.. ..|.++|...++++.+.++.+ ....+..+. ...++..+|.++.+.-.
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5566665553 457888888888888876533 333333332 23345566666655544
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=2.9e-12 Score=125.86 Aligned_cols=197 Identities=7% Similarity=-0.064 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC 532 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 532 (742)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556666677777777777777777664 3355677777777888888888888888777642 23456677777777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a 609 (742)
...|++++|.++++++.+ .+..| +...+..++.+|...|++++|.+.+++.. .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888877754 22334 45567777788888888888888887653 233577777788888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...++++++..|++...+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888876543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=8.8e-13 Score=128.61 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
..+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 333444444444444444444444433 2233445555555555566666666665555531 223344555555555
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
..|++++|.+.++++.+. .+.+...+..++.++.+.|++++|++.++++. .+.+..+|..+...+...|++++|..
T Consensus 137 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 666666666666655442 12334455555556666666666666555432 22245556666666666666666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHH
Q 044169 612 ISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
.++++++.+|+++.++..+..+.
T Consensus 215 ~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 215 MLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHccCcchHHHHHHHHHHH
Confidence 66666666666665555554443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=6e-12 Score=123.52 Aligned_cols=205 Identities=13% Similarity=0.052 Sum_probs=142.2
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...|..+...+...|++++|++.|+++.... +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 4556666667777777777777777665542 2233344445555
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHH
Q 044169 466 YNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDG 541 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 541 (742)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.++++.+.+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555543 234456666777777777777777777777663345543 5667777778888888888
Q ss_pred HHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 542 QKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 542 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
.+.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. .+.+...+..+...+...|+.++|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888887653 23346677888888888888888888887753 2345777888888889999999999999999999
Q ss_pred CCCCchhHH
Q 044169 620 DPDDAAVYV 628 (742)
Q Consensus 620 ~p~~~~~~~ 628 (742)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 998776544
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=2.9e-12 Score=122.60 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=116.8
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSL 462 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l 462 (742)
+++...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4455666666667777777777777777766543 2345556666666666666666666666666653 3345566666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044169 463 IEAYNKC-----------GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV 528 (742)
Q Consensus 463 i~~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 528 (742)
..+|.+. |++++|...|++.. +.+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 77777777776654 2345566667777777777777777777777654 555666667
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
..++...|++++|+..|+...+. .+.+...+..+..++.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777776552 2334556666677777777777777766654
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.9e-11 Score=121.65 Aligned_cols=224 Identities=10% Similarity=-0.019 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHH
Q 044169 385 SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL----LPSLATCEQIHSRIVKSKFESNVHVGS 460 (742)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~ 460 (742)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44555666666666666666666666665522 23344444444444 455555555555444432
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH-- 534 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 534 (742)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444455555555 555666666666555543 44455555555555
Q ss_pred --cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 044169 535 --SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HS 604 (742)
Q Consensus 535 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 604 (742)
.+++++|.+.|++..+. + +...+..+..+|.. .+++++|++.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665442 2 34445555555555 66666666666654323345556666666666 66
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 044169 605 DLKMAEFISKQILELDPDDAAVYVTLSNMYAE----AGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 654 (742)
++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777766654 5666677777777 777777777777666554
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=7.4e-12 Score=134.21 Aligned_cols=345 Identities=11% Similarity=0.019 Sum_probs=172.5
Q ss_pred HHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCCCcccHHHHHHHHHhCC--
Q 044169 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDI---KSMVAVVKQMPYLDIASCNCLLAGYAKNA-- 197 (742)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 197 (742)
+...+.+.|++++|.+++....+.| ++..+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4445566789999999999998876 334455666777778888 89999998877667777888877666655
Q ss_pred ---ChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---
Q 044169 198 ---LFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAI---DEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM--- 268 (742)
Q Consensus 198 ---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 268 (742)
++++|++.|++..+.|. ...+..+...+...+.. ..+.+.+......| +......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67899999998887653 22555555555544433 33444444444444 34566667777777764
Q ss_pred -hHHHHHHHhccCCCCcchHHHHHHHHHhCC---CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 044169 269 -MEDAESVFEGLVQRNVISWTAIINGFKQHG---DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQ 344 (742)
Q Consensus 269 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 344 (742)
.+++..+++.....++..+..+...|...| +.++|++.|++..+.|. ++...+..+-..+...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g------------ 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA------------ 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC------------
Confidence 444555566666666667778888887777 77778887777776652 2222222222222221
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHH-H--HhCCCcHHHHHHHHHHhHcCCCCCh
Q 044169 345 VIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAG-F--FRNQKTEEAIEAFSQMVRNDAACDE 421 (742)
Q Consensus 345 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~ 421 (742)
....++.++|.+.|++.- +.+...+..+... | ...++.++|+..|++..+.| +.
T Consensus 227 -------------------~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 227 -------------------TLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp -------------------GGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred -------------------CCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 000134455555555444 3344444444444 2 23455555555555555444 23
Q ss_pred HHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCchHHH
Q 044169 422 FTYSSILKACSLLP-----SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK----CGSWEDAERVFSQLT-AADVVSWN 491 (742)
Q Consensus 422 ~t~~~ll~~~~~~g-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~ 491 (742)
..+..+...|. .| +.++|...|+... +.+......|..+|.. ..+.++|...|++.. ..+.....
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 33333333332 22 4444444444443 1233333444444443 225555555555443 22333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 044169 492 SMIKAYSQ----NGRARKAIILFEKMVVEG 517 (742)
Q Consensus 492 ~li~~~~~----~g~~~~A~~~~~~m~~~g 517 (742)
.|...|.. ..+.++|..+|+...+.|
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44444432 235556666666555544
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.2e-12 Score=127.72 Aligned_cols=198 Identities=12% Similarity=0.146 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
.....+..+...+...|++++|...|+++. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 345667777888889999999999998875 3466788999999999999999999999999852 335678888999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 608 (742)
.+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|++.++++. .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999763 34567788899999999999999999998864 34468889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|...++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987644
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=1e-11 Score=119.28 Aligned_cols=201 Identities=12% Similarity=0.025 Sum_probs=137.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHc-CC
Q 044169 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQN-GR 502 (742)
Q Consensus 427 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~ 502 (742)
+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++.. +.+...|..+...|... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333333444444444444333332 2234455556666666666666666666554 33455677777778888 88
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
+++|+..++++.+.+..|+. ..+..+..++...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888774334543 56777778888888888888888888653 2334667888888888889999988888
Q ss_pred HhCC--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 582 SNLP--IK-PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 582 ~~~~--~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+++. .+ .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8753 23 4667777777778899999999999999999999887766544
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=2.2e-11 Score=121.26 Aligned_cols=227 Identities=11% Similarity=-0.055 Sum_probs=158.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFR----NQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+...+..+...|...|++++|...|++.-...+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667788889999999999999999988435567788889999999 999999999999998876 666777777
Q ss_pred HHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHH----c
Q 044169 429 KACSL----LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQ----N 500 (742)
Q Consensus 429 ~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 500 (742)
..+.. .++.++|...++...+.+ +...+..+. ..|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg-------------------------------~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLG-------------------------------GIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH-------------------------------HHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHH-------------------------------HHHHcCCCcc
Confidence 77766 777777777777766543 334444444 44444 5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cC
Q 044169 501 GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH----SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AG 572 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g 572 (742)
+++++|+..|++..+.+ +...+..+...+.. .+++++|.+.|++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 55666666666655543 33444455555555 66666666666666542 234555666666766 77
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 044169 573 KLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 573 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 623 (742)
++++|++.+++.....+...+..+...+.. .+++++|...++++++++|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777777665422336666777777777 788888888888888888743
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=6.1e-12 Score=130.62 Aligned_cols=246 Identities=13% Similarity=0.069 Sum_probs=197.4
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS-LATCEQIHSRIVKSKFESNVHVGSSLIE 464 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~li~ 464 (742)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+...+...|+ +++|...++.+.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3567778888888999999999999988764 3356677888888888886 999999999888875 556788889999
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc-cCcHH
Q 044169 465 AYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSH-SGLVQ 539 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 539 (742)
+|.+.|++++|...|+++. ..+...|..+..++.+.|++++|+..|+++++. .|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999876 456778999999999999999999999999985 555 4678888888888 56656
Q ss_pred HH-----HHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-------
Q 044169 540 DG-----QKVFESMVKEYGILPEEAHYSCMVDLLGRAG--KLEIALIFISNLPIKP-TAPIWRPLFAACRCHS------- 604 (742)
Q Consensus 540 ~a-----~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 604 (742)
+| ++.+++.++. -+-+...|..+..+|...| ++++|++.+.++...| +...+..+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 4778877652 2335667888888898888 6899999888775444 4677888888887764
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 044169 605 -D-LKMAEFISKQI-LELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 605 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 637 (742)
+ .++|+++++++ ++++|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899998888888888776543
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=7.4e-12 Score=116.31 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=136.4
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
+...|..+...|.+.|++++|++.|++.++. .|+. ..+..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888888888888888888888888874 5544 67788888888888888888888888652 33455667777
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 642 (742)
...+...+++++|.+.+.+.. .+.+...+..+...+...|++++|++.++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888899999988887754 334678888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 044169 643 AEEQRKLMKMKE 654 (742)
Q Consensus 643 A~~~~~~m~~~~ 654 (742)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999887644
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=3.5e-11 Score=119.52 Aligned_cols=239 Identities=13% Similarity=0.021 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCCh----hhHHHHHH
Q 044169 320 YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASS----VSWNAQIA 394 (742)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~li~ 394 (742)
..+......+...|+++.|...++.+++.. +.+...+..+...|...|++++|...|++. ...++. ..|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677889999999999999999865 334557888889999999999999999987 212232 23889999
Q ss_pred HHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044169 395 GFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474 (742)
Q Consensus 395 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 474 (742)
.|...|++++|+..|++..+.. +.+..++..+...+. ..|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~-----------------------------------~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFY-----------------------------------NKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH-----------------------------------HTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH-----------------------------------HccCHHH
Confidence 9999999999999999998864 223445555544444 4455555
Q ss_pred HHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc---HHHHHHHHHH
Q 044169 475 AERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGL---VQDGQKVFES 547 (742)
Q Consensus 475 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 547 (742)
|...|++.. +.+...|..+...+...+++++|+..|+++.+. .|+ ...+..+..++...|+ +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 555555444 223344555552333344777777777777663 344 3455556666666666 6666666666
Q ss_pred hHHhcCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044169 548 MVKEYGILPE------EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLF 597 (742)
Q Consensus 548 m~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 597 (742)
+.+...-.|+ ...|..+...|.+.|++++|.+.+++.. ..| +...+..+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 6553322333 1456667777777788888877777653 334 344444433
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=5.8e-12 Score=130.82 Aligned_cols=227 Identities=8% Similarity=0.056 Sum_probs=193.0
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCCchHHHHHHHH
Q 044169 421 EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS-WEDAERVFSQLT---AADVVSWNSMIKA 496 (742)
Q Consensus 421 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~ 496 (742)
...|..+...+...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|...|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777778888999999999999999875 5567899999999999997 999999999887 4467799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh-cCCH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR-AGKL 574 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-~g~~ 574 (742)
+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++++. -+-+...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999985 565 478999999999999999999999999873 23467789999999999 6665
Q ss_pred HHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-------
Q 044169 575 EIA-----LIFISNLP-IKP-TAPIWRPLFAACRCHS--DLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG------- 638 (742)
Q Consensus 575 ~~A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------- 638 (742)
++| ++.+++.. ..| +...|..+...+...| ++++|...++++ +.+|+++.++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 47776653 345 6788999999998888 689999999998 899999999999999999985
Q ss_pred --CHHHHHHHHHHH-HhC
Q 044169 639 --LQADAEEQRKLM-KMK 653 (742)
Q Consensus 639 --~~~~A~~~~~~m-~~~ 653 (742)
.+++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999998 543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=6.2e-12 Score=133.02 Aligned_cols=263 Identities=14% Similarity=0.099 Sum_probs=150.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chhHH
Q 044169 389 WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVHVG 459 (742)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~~~ 459 (742)
+......+...|++++|+..|++....+. .+ ...+..+...+...|+++.|...+..+.+. +..| ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444445555555555555555444321 11 123444444555555555555555443321 1111 13445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 044169 460 SSLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGR--------------------ARKAIILF 510 (742)
Q Consensus 460 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 510 (742)
..+...|...|++++|...+++... .+ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5556666666666666666655431 11 2356666666666677 77777766
Q ss_pred HHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 511 EKMVVE----GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 511 ~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
++..+. +-.|.. .++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 665432 111211 34666666777777777777777776542211122 225667777777777777777777
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCHHHHHHHH
Q 044169 582 SNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDD------AAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 582 ~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
++.. ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6542 1112 4456667777777888888888888777763322 556777888888888888888877
Q ss_pred HHHHh
Q 044169 648 KLMKM 652 (742)
Q Consensus 648 ~~m~~ 652 (742)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=3.5e-12 Score=137.61 Aligned_cols=207 Identities=12% Similarity=0.027 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSW-EDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
+.+...+....+.. +.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444433322 34566777777777788888 88888887765 335668888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc--------CCHHH
Q 044169 514 VVEGIRPTNSTFLAVLSACSHS---------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA--------GKLEI 576 (742)
Q Consensus 514 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~ 576 (742)
.+ +.|+...+..+..++... |++++|++.+++..+. .+.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 87 468877888888899998 9999999999998763 234577888899999988 99999
Q ss_pred HHHHHHhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 577 ALIFISNLP-IKP----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 577 A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998864 344 7889999999999999999999999999999999999999999999999999999875543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=4.9e-12 Score=134.25 Aligned_cols=261 Identities=12% Similarity=0.058 Sum_probs=167.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CC-CCchhHHHH
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACDE----FTYSSILKACSLLPSLATCEQIHSRIVKS----KF-ESNVHVGSS 461 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~-~~~~~~~~~ 461 (742)
.+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...++.+.+. +. +.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555566666666666655554211 11 24455555555566666666665554432 11 122355666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---------CCchHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTA---------ADVVSWNSMIKAYSQNGR-----------------ARKAIILFEKMVV 515 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 515 (742)
+...|...|++++|...|++... ....+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 66677777777777777665541 122366667777777777 7777777776544
Q ss_pred c----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 044169 516 E----GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP- 585 (742)
Q Consensus 516 ~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (742)
. +-.|.. .++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|.+.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 111222 35677777888888888888888877653211112 2267778888888888888888887653
Q ss_pred ---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 586 ---IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPD------DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 586 ---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
...+ ..++..+...+...|++++|...++++++..++ ...++..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 456777888888999999999999988886432 245788899999999999999999888764
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=1.4e-11 Score=126.29 Aligned_cols=262 Identities=15% Similarity=0.108 Sum_probs=175.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chhHHHH
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVHVGSS 461 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~~~~~ 461 (742)
.....+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+..+.+. +..+ ...++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 334455556666666666666555421 11 234455555566666666666665554322 2111 2455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCC----chHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLT-----AAD----VVSWNSMIKAYSQNGR--------------------ARKAIILFEK 512 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 512 (742)
+...|...|++++|...+++.. ..+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 7777777788877777777654 122 2366777777888888 8888888877
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 513 MVVE----GIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 513 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
.... +..|. ...+..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6532 11222 235777778888899999999988887643211112 23677888899999999999988876
Q ss_pred CC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 584 LP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPD------DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 584 ~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
.. ..++ ..++..+...+...|++++|...++++++..|. ...++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 53 1122 456777888899999999999999999887442 245788999999999999999999998
Q ss_pred HHhC
Q 044169 650 MKMK 653 (742)
Q Consensus 650 m~~~ 653 (742)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8754
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=2.3e-09 Score=118.74 Aligned_cols=417 Identities=11% Similarity=0.025 Sum_probs=271.8
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCC---hHHHHHHHHHHHHhC-CCCChhHH
Q 044169 181 LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSA---IDEGKQLHAQTMKLQ-YLSKTAVS 256 (742)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 256 (742)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+..+|+..+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999998889999999999999875 35566677777877777788 999999999888764 23777788
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHhccC------CC-CcchHHHHHHHHHh---------CCCcchHHHHHHHHHH
Q 044169 257 NALLTMYIKCGMM--------EDAESVFEGLV------QR-NVISWTAIINGFKQ---------HGDYEKPLRLVCLMRE 312 (742)
Q Consensus 257 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 312 (742)
...+....+.++. +...++|+... ++ +...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8777766665543 23346666532 22 34567777765443 2345567777777764
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC--C
Q 044169 313 DGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-------GK--S 383 (742)
Q Consensus 313 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~ 383 (742)
.....-..+|.......... +...+..++.+. ..+++.|...+.++ .. +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 21111122332211111110 111122221111 01222233333221 00 0
Q ss_pred -----------C--C------hhhHHHHHHHHHhCCC-------cHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 384 -----------A--S------SVSWNAQIAGFFRNQK-------TEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 384 -----------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
| + ...|...+.---..+. .+.+..+|++.... ++-+...|...+.-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 0 1335555543333221 23455677777665 244666777777777777888
Q ss_pred HHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------chHHH
Q 044169 438 ATCE-QIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-------------AD------------VVSWN 491 (742)
Q Consensus 438 ~~a~-~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~ 491 (742)
+.|. .+++..... ++.+...+-..+....+.|+++.|.++|+++.. |+ ...|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 999988875 456677788888889999999999999988752 31 23688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVE-GIRPTNSTFLAVLSACSH-SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG 569 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 569 (742)
..+....+.|..+.|..+|.++++. + .+....|...+..-.+ .++.+.|.++|+..++.+ +.+...+...++...
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 8888888899999999999999875 2 1122334332222223 355899999999998854 345667788899999
Q ss_pred hcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 570 RAGKLEIALIFISNLP-IKP----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
..|+.+.|..+|++.. ..| ....|...+..-.++|+.+.+..+.+++.+..|+++.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999865 223 3567999999999999999999999999999997653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=9.5e-12 Score=131.57 Aligned_cols=254 Identities=11% Similarity=0.067 Sum_probs=163.6
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHc----CCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chh
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRN----DAAC-DEFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVH 457 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~ 457 (742)
.|..+...|...|++++|...+++.... +-.| ...++..+...+...|++++|...+....+. +..+ ...
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444455555555555555555543321 1111 1234444555555556666665555544332 1011 134
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHhcC-----CC----CchHHHHHHHHHHHcCCHHHHHH
Q 044169 458 VGSSLIEAYNKCGS--------------------WEDAERVFSQLT-----AA----DVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 458 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
++..+...|...|+ +++|.+.+.+.. .. ...+|..+...|...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 56666777777777 777777766543 11 12367778888888899999998
Q ss_pred HHHHHHHcC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHH
Q 044169 509 LFEKMVVEG-IRPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 509 ~~~~m~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
.+++..+.. -.++. .++..+...+...|++++|...+++..+...-.++ ..++..+..+|...|++++|.+
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 888876531 01221 36777888888999999999999887643211112 4567788899999999999999
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHH
Q 044169 580 FISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELD------PDDAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 580 ~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 641 (742)
.+++.. ..++ ..++..+...+...|++++|...+++++++. +....++..++.+|...|+..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 887653 1122 5567788888999999999999999998863 223567888899998888764
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=1.7e-11 Score=121.88 Aligned_cols=219 Identities=14% Similarity=-0.014 Sum_probs=179.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSKF---ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR 504 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 504 (742)
....|++++|...++.+.+... +.+..++..+...|...|++++|...|++.. +.+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999988632 1246788899999999999999999999876 446789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
+|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999852 334678999999999999999999999999763 355444445555667889999999999764
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 585 P--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD----DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 585 ~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
. .+++...| .++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 3 23343444 4677788888999999999999887663 37889999999999999999999999998654
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=5.5e-11 Score=110.32 Aligned_cols=167 Identities=16% Similarity=0.094 Sum_probs=141.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA 531 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 531 (742)
+..+|..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678889999999999999999999876 4466789999999999999999999999998752 3344667777788
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IK-PTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a 609 (742)
+...++++.+.+.+....+. .+.+...+..+..+|.+.|++++|++.|++.. .. .+..+|..+...+.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998763 34456788899999999999999999998864 34 4688899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 044169 610 EFISKQILELDPDDA 624 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~ 624 (742)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999653
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=4.4e-11 Score=126.87 Aligned_cols=262 Identities=10% Similarity=0.001 Sum_probs=172.2
Q ss_pred HHHHHHhCCCHHHHHHHHHhc-CCCC-Ch----hhHHHHHHHHHhCCCcHHHHHHHHHHhHc----CC-CCChHHHHHHH
Q 044169 360 IVDMYSGLGEIWEAKKQLKEM-GKSA-SS----VSWNAQIAGFFRNQKTEEAIEAFSQMVRN----DA-ACDEFTYSSIL 428 (742)
Q Consensus 360 li~~~~~~g~~~~A~~~~~~~-~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll 428 (742)
+...+...|++++|...|++. ...| +. ..|..+...|...|++++|+..|++.... +- .....++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 334455555555555555554 1112 21 24555556666666666666666655432 11 11234555566
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC--
Q 044169 429 KACSLLPSLATCEQIHSRIVKS----KF-ESNVHVGSSLIEAYNKCGS-----------------WEDAERVFSQLTA-- 484 (742)
Q Consensus 429 ~~~~~~g~~~~a~~i~~~~~~~----~~-~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-- 484 (742)
..+...|++++|...+..+.+. +- +....++..+...|...|+ +++|.+.+++...
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666667777766666655442 11 1224566777778888888 8888777776531
Q ss_pred ---C----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 044169 485 ---A----DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-RPT----NSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552 (742)
Q Consensus 485 ---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 552 (742)
. ....|..+...|...|++++|+..+++..+... .++ ...+..+...+...|++++|.+.+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 223777888889999999999999988775311 112 1267788888999999999999998876532
Q ss_pred CCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 553 GILP----EEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 553 ~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.-.. ....+..+..+|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 14567888999999999999999988753 1112 4467778888999999999999999999987
Q ss_pred C
Q 044169 621 P 621 (742)
Q Consensus 621 p 621 (742)
+
T Consensus 374 ~ 374 (411)
T 4a1s_A 374 X 374 (411)
T ss_dssp C
T ss_pred h
Confidence 6
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=9.8e-12 Score=126.11 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=119.6
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHc-------CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------CC
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRN-------DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS------KF 452 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~ 452 (742)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777778888888888888888877652 11223344555556666666666666666655442 11
Q ss_pred CC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCH-HH
Q 044169 453 ES-NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE------GIRPTN-ST 524 (742)
Q Consensus 453 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t 524 (742)
.+ ...++..+...|...|++++|.+ .++++.+. +-.|+. ..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~-------------------------------~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEP-------------------------------LCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHH-------------------------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHH-------------------------------HHHHHHHHHHHhcCCCChHHHHH
Confidence 11 23344444444445555555444 44444432 111221 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEY-----GILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP----------IKP 588 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 588 (742)
+..+...+...|++++|.++++++.+.. +..| ....+..+..+|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444555555555555555555554320 1011 12344555555555666665555554432 001
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 589 T-------APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 589 ~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
. ...+..+...+...+.+.++...++.+....|.++.++..++.+|...|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 111122222233444555666677777777777788888888888888888888888887654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=5.9e-10 Score=112.97 Aligned_cols=218 Identities=12% Similarity=0.126 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhHcCCCCChHHHHHHHHHhc-------CCCCH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 403 EEAIEAFSQMVRNDAACDEFTYSSILKACS-------LLPSL-------ATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 403 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
++|...|++..... +-+...|..+...+. ..|+. ++|..+++...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666655532 223444444444432 23554 6677777766663113345567777777777
Q ss_pred cCCHHHHHHHHHhcC--CC-Cch-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCcHHHHHH
Q 044169 469 CGSWEDAERVFSQLT--AA-DVV-SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS-HSGLVQDGQK 543 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 543 (742)
.|++++|.++|++.. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777665 22 233 67777777777788888888888877642 223334433333222 2578888888
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI----KP--TAPIWRPLFAACRCHSDLKMAEFISKQIL 617 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 617 (742)
+|+...+.. +.+...|..++..+.+.|++++|..+|++... .| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888776632 23556777777777788888888888776531 33 35677777777777888888888888888
Q ss_pred hcCCCCc
Q 044169 618 ELDPDDA 624 (742)
Q Consensus 618 ~~~p~~~ 624 (742)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777644
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=6.1e-11 Score=133.08 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=137.0
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
..+|+.|...|.+.|++++|++.|++.++. .|+. ..+..+..++.+.|++++|++.|++.++. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 457788888888888888888888888874 5664 67888888888888888888888888753 123466788888
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999888754 344 5888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044169 644 EEQRKLMKM 652 (742)
Q Consensus 644 ~~~~~~m~~ 652 (742)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887753
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=2.1e-08 Score=111.10 Aligned_cols=423 Identities=9% Similarity=-0.011 Sum_probs=231.8
Q ss_pred CcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 044169 84 YSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYA 163 (742)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (742)
...+.+..|++.+..++. |..+|..++..+.+.+.+..++.+++.++.. ++.....|...+..-.
T Consensus 47 ~~~d~i~~lE~~l~~np~--------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~ 111 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT--------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEF 111 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC--------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 455666677777777765 8999999999998888999999999999887 5677788999999888
Q ss_pred hcCC---hhHHHHHHccCCC-----CCcccHHHHHHHHHhCCCh--------HHHHHHHHHchh-CCC-CCC-hhhHHHH
Q 044169 164 KCGD---IKSMVAVVKQMPY-----LDIASCNCLLAGYAKNALF--------DQAFSFFLKLDG-IDV-QPN-HYTYSTM 224 (742)
Q Consensus 164 ~~g~---~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~t~~~l 224 (742)
+.|+ ++.+..+|++... +++..|..-+.-..+.++. +...++|+.... .|. .|+ ...|...
T Consensus 112 ~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 112 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp TC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred hhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 8888 9999999987542 6667788777655554443 334467776543 355 454 3456666
Q ss_pred HHHHcc---------CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-------------ChHHHHHHHhcc---
Q 044169 225 LAICGS---------LSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCG-------------MMEDAESVFEGL--- 279 (742)
Q Consensus 225 l~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------------~~~~A~~~~~~~--- 279 (742)
+..... .++++.++.+|..++......-..+|......--..+ +++.|...+.++
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 654332 2346678888888774321111223322211110001 112222222211
Q ss_pred ----CC--CC--------------------cchHHHHHHHHHhCCC-cchHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044169 280 ----VQ--RN--------------------VISWTAIINGFKQHGD-YEKPLRLVCLMREDGIDPNEYTFTVALASCASL 332 (742)
Q Consensus 280 ----~~--~~--------------------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 332 (742)
.. |. ...|...+..--..+. .+..
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~----------------------------- 322 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDD----------------------------- 322 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH-----------------------------
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccch-----------------------------
Confidence 00 00 0112222221111110 0000
Q ss_pred CChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH-HHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHH
Q 044169 333 RNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAK-KQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAF 409 (742)
Q Consensus 333 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 409 (742)
...+.+..+|+..+.. ++....+|...+..+...|+.++|. ++|++. .++.+...|-..+...-+.|++++|.++|
T Consensus 323 ~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 323 LHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 0011233444444443 2334555555555555555555554 555554 21334444555555556666666666666
Q ss_pred HHHhHcC---------CCCC------------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 410 SQMVRND---------AACD------------EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 410 ~~m~~~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
+++.... -.|+ ...|...+....+.|..+.|+.+|..+.+........+|...+.+-.+
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 6655421 0121 224555555556666777777777776654101122333333333333
Q ss_pred cC-CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHH
Q 044169 469 CG-SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT--NSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 469 ~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~ 542 (742)
.+ +.+.|.++|+... ..+...|...+.-....|+.+.|..+|++.+.....+. ...|...+..-...|+.+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33 4677777777655 33455566666666666777777777777766422111 134666666666667777777
Q ss_pred HHHHHhHHh
Q 044169 543 KVFESMVKE 551 (742)
Q Consensus 543 ~~~~~m~~~ 551 (742)
++.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777653
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=1.8e-10 Score=117.95 Aligned_cols=235 Identities=10% Similarity=0.056 Sum_probs=145.9
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHc----CCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chh
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRN----DAAC-DEFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVH 457 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~ 457 (742)
.|..+...|...|++++|.+.+++.... +..| ...++..+...+...|++++|...+....+. +..+ ...
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555543321 1111 1234445555555566666666555554332 1000 123
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHhcCC-----C----CchHHHHHHHHHHHcCCHHHHHH
Q 044169 458 VGSSLIEAYNKCGS--------------------WEDAERVFSQLTA-----A----DVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 458 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
++..+...|...|+ +++|.+.+++... . ....+..+...|...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55666667777777 7777777665431 1 12367777788888888888888
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHH
Q 044169 509 LFEKMVVEGI-RPT----NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 509 ~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
.+++..+... .++ ..++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|.+
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888764310 111 136777778888899999999988887643211112 4467788889999999999998
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 580 FISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 580 ~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.+++.. ..++ ..++..+...+...|++++|...+++++++.++
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 887653 1112 446777888899999999999999999988663
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2.2e-10 Score=105.88 Aligned_cols=158 Identities=16% Similarity=0.093 Sum_probs=93.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..++..+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 333344444444444444443332 1112233444444444444444444444444331 1223344455555555555
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 573 KLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 573 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|+++.++..++.+|...|++++|.+.++.+
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555432 23356667777777888888888888888888888888888888888888888888888888877
Q ss_pred HhC
Q 044169 651 KMK 653 (742)
Q Consensus 651 ~~~ 653 (742)
.+.
T Consensus 171 ~~~ 173 (186)
T 3as5_A 171 NEL 173 (186)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=5.2e-10 Score=113.38 Aligned_cols=213 Identities=6% Similarity=0.064 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-CchHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYN-------KCGSW-------EDAERVFSQLTA---A-DVVSWNSMIKAYSQ 499 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 499 (742)
++|..+|+.+.+.. +.+...|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888763 566778888877775 35885 899999997653 3 45589999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh-hcCCHHH
Q 044169 500 NGRARKAIILFEKMVVEGIRPTN-S-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG-RAGKLEI 576 (742)
Q Consensus 500 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 576 (742)
.|++++|..+|+++++ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 46654 3 7888999999999999999999999752 2344555554444422 3799999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 577 ALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL---DPD-DAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 577 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
|.++|++.. .+.+...|..++..+...|+.++|..+++++++. .|+ +...+..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998864 2346889999999999999999999999999996 553 6778999999999999999999999998
Q ss_pred HhCCC
Q 044169 651 KMKEI 655 (742)
Q Consensus 651 ~~~~~ 655 (742)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 86553
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=6.5e-10 Score=116.62 Aligned_cols=226 Identities=9% Similarity=0.043 Sum_probs=110.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCC-CCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--CC----CCchhHHHH
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDA-ACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS--KF----ESNVHVGSS 461 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~----~~~~~~~~~ 461 (742)
...+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+....+. .. +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3444555666666666655543200 011 234444444555555555555555444332 00 001234555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLT-----AADV----VSWNSMIKAYSQNGRARKAIILFEKMVVE----GIRPTN-STFLA 527 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ 527 (742)
+..+|...|++++|.+.|++.. ..+. .++..+...|...|++++|+..+++..+. +..|+. .++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 5556666666666666555443 1111 24555666666666666666666665541 221322 44555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcC---CCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYG---ILPEEAHYSCMVDLLGRAGK---LEIALIFISNLPIKPTAPIWRPLFAACR 601 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 601 (742)
+...+...|++++|.+.+++..+... -+.....+..+...|...|+ +++|+.++++....
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~-------------- 335 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY-------------- 335 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--------------
Confidence 55666666666666666655543211 11111123344455555555 44555555444311
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|.....+..++.+|...|++++|.+.+++..
T Consensus 336 -------------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 336 -------------------ADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2233455566666666666666666666554
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=1.7e-10 Score=121.14 Aligned_cols=231 Identities=8% Similarity=-0.042 Sum_probs=151.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CCC-HHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEG--I---RPT-NSTFL 526 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p~-~~t~~ 526 (742)
....+...|++++|...|++... ++ ..+|..+...|...|++++|+..+++..+.- . .|. ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556667777777777766542 22 2366777777777888888887777766421 1 111 24577
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CC-C-CHHHHH
Q 044169 527 AVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP------IK-P-TAPIWR 594 (742)
Q Consensus 527 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-p-~~~~~~ 594 (742)
.+...|...|++++|.+.+++..+...-.++ ..++..+..+|...|++++|++.+++.. .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888777643211122 2367778888888888888888877643 12 3 355677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCcccEEEE
Q 044169 595 PLFAACRCHSDLKMAEFISKQILEL-----DPDDAAVYVTLSNMYAEAGL---QADAEEQRKLMKMKEISKEPGCSWIEV 666 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~l~~~y~~~g~---~~~A~~~~~~m~~~~~~~~~~~s~~~~ 666 (742)
.+...+...|++++|...+++++++ +|.....+..++.+|...|+ +++|..++++. +..+.....+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~--- 342 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA--- 342 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH---
Confidence 8888888999999999999988886 33333446778999999999 77777777655 2221111111
Q ss_pred cCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 044169 667 YNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIED 699 (742)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 699 (742)
..+...+...+.+.++.+.+.+..++.+++..
T Consensus 343 -~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 343 -IDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 11223345566778888889888888876654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=2e-11 Score=123.76 Aligned_cols=239 Identities=11% Similarity=0.043 Sum_probs=146.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhcCC----------CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc------C
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMGK----------SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN------D 416 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 416 (742)
...++..+...|...|++++|...|++.-. ......+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467788899999999999999999988721 112456888999999999999999999998764 2
Q ss_pred C-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch
Q 044169 417 A-ACDEFTYSSILKACSLLPSLATCEQIHSRIVKS------KFES-NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV 488 (742)
Q Consensus 417 ~-~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 488 (742)
- .....++..+...+...|++++|...+..+.+. +..| ....+..+...|...|++++|.+.|+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-------- 177 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ-------- 177 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--------
Confidence 2 223567888899999999999999999987764 1112 23344455555555555555555554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCC
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVE------GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEY------GIL 555 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~ 555 (742)
++.+. +..|+. .++..+...+...|++++|.+.++++.+.. ...
T Consensus 178 -----------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 178 -----------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -----------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 43332 112221 234444555555555555555555554310 001
Q ss_pred C-------cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 556 P-------EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 556 p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
+ ....+..+...+...+.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11122333344455556666666666654 233 4667888888999999999999999999988774
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=1.1e-09 Score=105.60 Aligned_cols=204 Identities=9% Similarity=0.043 Sum_probs=139.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIK 495 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 495 (742)
.|...+......+...|++++|...+....+..-+++...+..+..+|.+.|++++|.+.|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566777777788888888888888888776533566666667888888888888888888765 234457777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc---HHHHHHH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPT-N-------STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE---EAHYSCM 564 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 564 (742)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888774 444 3 2366666677778888888888887753 3454 4566677
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 565 VDLLGRAGKL--EIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 565 ~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..+|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 2222211 22333333332 33445678999999999999998888777776654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=1.2e-09 Score=100.84 Aligned_cols=168 Identities=13% Similarity=-0.010 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC 532 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 532 (742)
...+..+...+...|++++|...|+++. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3556778888999999999999999887 3456788899999999999999999999998852 34567788888999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
...|++++|.+.++++.+. .+.+...+..++.++...|++++|.+.+++.. .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999763 34567788899999999999999999998864 3446788999999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 044169 611 FISKQILELDPDDAAV 626 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~ 626 (742)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1.2e-08 Score=106.54 Aligned_cols=258 Identities=11% Similarity=0.004 Sum_probs=164.3
Q ss_pred HHHhCCCcHHHHHHHHHHhHcCCCCChH----HHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chhHHHHHHHH
Q 044169 395 GFFRNQKTEEAIEAFSQMVRNDAACDEF----TYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVHVGSSLIEA 465 (742)
Q Consensus 395 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~~~~~li~~ 465 (742)
.+...|++++|...+++........+.. ++..+...+...|+++.|...+....+. +... ....+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445566666666666555432111111 2334444555566666666666555432 1000 12234556677
Q ss_pred HHhcCCHHHHHHHHHhcC-------C---C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLT-------A---A-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR--P--TNSTFLAVLS 530 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 530 (742)
|...|++++|...+++.. . + ....+..+...+...|++++|...+++.....-. + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 777888888877777654 1 1 1235566777888889999999888887764221 1 1245777777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-----CMVDLLGRAGKLEIALIFISNLP-IKPT-----APIWRPLFAA 599 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~ 599 (742)
.+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88889999999999988765322111111111 23455778999999999998865 1221 2346677778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 600 CRCHSDLKMAEFISKQILELDPD-----D-AAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+...|++++|...++++++..+. + ...+..++.+|...|++++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999998875332 1 23677889999999999999999888764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=9.3e-10 Score=105.99 Aligned_cols=189 Identities=10% Similarity=-0.038 Sum_probs=115.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---A-ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVL 529 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 529 (742)
++..+......|.+.|++++|...|++.. + ++...|..+..++...|++++|+..+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44566666677777777777777777654 2 5555666666777777777777777777766 34544 4566666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEE-------AHYSCMVDLLGRAGKLEIALIFISNLP-IKPT---APIWRPLFA 598 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~ 598 (742)
.++...|++++|.+.+++..+.. +.+. ..|..+...+...|++++|++.|++.. ..|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 67777777777777777766532 1222 345666666666777777777766643 3444 344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 5533 33444556666655454444332 2344556699999998887643
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=5.1e-10 Score=120.66 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=156.5
Q ss_pred CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 044169 471 SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRA-RKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 471 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
.++++...+++.. ..+...|..+...|...|++ ++|+..|++..+. .|+ ...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666554 34667899999999999999 9999999999985 555 578999999999999999999999
Q ss_pred HHhHHhcCCCCcHHHHHHHHHHHhhc---------CCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHc--------CCH
Q 044169 546 ESMVKEYGILPEEAHYSCMVDLLGRA---------GKLEIALIFISNLP-I-KPTAPIWRPLFAACRCH--------SDL 606 (742)
Q Consensus 546 ~~m~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~--------g~~ 606 (742)
++..+ ..|+...+..+..+|... |++++|++.+++.. . +.+...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99964 458888899999999999 99999999999864 3 34688999999999988 999
Q ss_pred HHHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 607 KMAEFISKQILELDP---DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++|+..++++++++| +++.++..++.+|...|++++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987644
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=1.7e-09 Score=113.08 Aligned_cols=220 Identities=13% Similarity=-0.030 Sum_probs=132.6
Q ss_pred hcCCCCHHHHHHHHHHHHHhC--CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC-----chHHHHHHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSK--FES---NVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AAD-----VVSWNSMIK 495 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~--~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~ 495 (742)
+...|++++|...+..+.+.. ... ...++..+...|...|++++|...+.+.. .++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345566666666666554321 011 13455566666777777766666665543 111 235666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCcHHHHHHHHHH
Q 044169 496 AYSQNGRARKAIILFEKMVVE----GIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEY---GILPEEAHYSCMVDL 567 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~l~~~ 567 (742)
.|...|++++|+..|++..+. |-.+. ..++..+...+...|++++|.+.+++..+.. +.+....++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777777777777777776542 11111 1356667777777888888888777765411 222234566777778
Q ss_pred HhhcCCHHHHHHHHHhCC------CCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 044169 568 LGRAGKLEIALIFISNLP------IKPT-APIWRPLFAACRCHSD---LKMAEFISKQILELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 637 (742)
|.+.|++++|.+.+++.. ..|. ...+..+...+...++ .++|...+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 888888888887776542 1222 2334444445666666 55566555551 12233455677888888889
Q ss_pred CCHHHHHHHHHHHH
Q 044169 638 GLQADAEEQRKLMK 651 (742)
Q Consensus 638 g~~~~A~~~~~~m~ 651 (742)
|++++|.+.+++..
T Consensus 350 g~~~~A~~~~~~al 363 (378)
T 3q15_A 350 CHFEQAAAFYRKVL 363 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99888888887765
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=3.8e-08 Score=102.78 Aligned_cols=228 Identities=10% Similarity=0.068 Sum_probs=167.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCC-CCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--CC---CC-chhHHH
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDA-ACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS--KF---ES-NVHVGS 460 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~---~~-~~~~~~ 460 (742)
....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+. .. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456678888888888887765311 122 346667777788888888888888776543 11 11 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHH
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVE----GIRPTNSTFLA 527 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 527 (742)
.+..+|...|++++|.+.|++... .+ ..+++.+...|...|++++|+..+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 888889999999999988877651 22 236778888999999999999999988761 22222467888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCC---CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGI---LPEEAHYSCMVDLLGRAGK---LEIALIFISNLPIKPT-APIWRPLFAAC 600 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 600 (742)
+...+.+.|++++|...+++..+...- +.....+..+...|...|+ +++|+..+++....|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 889999999999999999998764322 2223456777788888888 9999999998654343 34566778889
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 044169 601 RCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~ 619 (742)
...|++++|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998775
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=7.6e-09 Score=101.88 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=134.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-D---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-RPT-NSTFL 526 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 526 (742)
+...+..+...+.+.|++++|...|+++. .| + ...+..+..+|.+.|++++|+..|++..+..- .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45556666677777777777777777765 22 2 34666677777777777777777777776411 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044169 527 AVLSACSH--------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFA 598 (742)
Q Consensus 527 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 598 (742)
.+..++.. .|++++|+..|+++.+...-.+ .....+.......+++ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55666666 7777777777777765322111 1111111111000000 112456777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCCcccEEE
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYAEA----------GLQADAEEQRKLMKMKEISKEPGCSWIE 665 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 665 (742)
.+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8999999999999999999999974 45889999999977 999999999999886442
Q ss_pred EcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 044169 666 VYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700 (742)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 700 (742)
.++.+.+....+.++...+.+.
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHh
Confidence 3555666666677776666543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.2e-09 Score=108.75 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTA-------A----DVVSWNSMIKAYSQNGRARKAIILFEKMVVE------GIR 519 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 519 (742)
.++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..+++..+. .-.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444444445555555555544444320 1 1224555555566666666666666555542 111
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-------
Q 044169 520 PT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEY-----GILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP------- 585 (742)
Q Consensus 520 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 585 (742)
|+ ..++..+...+...|++++|.++++++.+.. +..| ....+..+..+|.+.|++++|.+.+++..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 22 2445566666666667776666666665420 1122 23456666667777777777766665432
Q ss_pred ---CCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 586 ---IKP-TAPIWRPLFAACRCHSD------LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 586 ---~~p-~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..+ ....|..+.......+. +..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 12223333322222221 23333333333333455667888899999999999999999887764
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=2.3e-07 Score=96.54 Aligned_cols=155 Identities=10% Similarity=0.047 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc-------CCC--C-ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCC----ChHHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM-------GKS--A-SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAAC----DEFTY 424 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~-------~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~ 424 (742)
.+...+...|++++|...+++. +.. | ....+..+...+...|++++|...+++........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 3444555555555555555443 100 1 12234445555566666666666666554422111 11234
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHHhcCCCCc-------hHHH
Q 044169 425 SSILKACSLLPSLATCEQIHSRIVKSKFESN--VHVGS----SLIEAYNKCGSWEDAERVFSQLTAADV-------VSWN 491 (742)
Q Consensus 425 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~ 491 (742)
..+...+...|++++|...++......-.++ ..... ..+..+...|++++|...+++...++. ..+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 4444445555555555555554443211110 00000 122234455555555555555442211 1233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 044169 492 SMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m 513 (742)
.+...+...|++++|...+++.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445555555555555444
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=3.5e-09 Score=118.81 Aligned_cols=163 Identities=12% Similarity=0.149 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLS 530 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 530 (742)
+...++.|..+|.+.|++++|++.|++.. ..+..+|+.+..+|.+.|++++|+..|++.++. .|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 46778888888888999999998888775 345678888999999999999999999998874 6664 67888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~ 608 (742)
++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++.. ..| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999988763 22346688889999999999999999998754 445 57788899999999999999
Q ss_pred HHHHHHHHHhcCC
Q 044169 609 AEFISKQILELDP 621 (742)
Q Consensus 609 a~~~~~~~~~~~p 621 (742)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999998887644
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=2.5e-08 Score=98.15 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=145.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---chH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN---VHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-D---VVS 489 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~ 489 (742)
.+...+......+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++.. .| + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345677777888899999999999999998864 223 6778889999999999999999999886 23 2 346
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH
Q 044169 490 WNSMIKAYSQ--------NGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH 560 (742)
Q Consensus 490 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 560 (742)
+..+..++.. .|++++|+..|++.++. .|+. .....+ ..+...... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999985 4553 222111 111111110 0122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCch
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCH----------SDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
+..+..+|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 5567788889999999998888753 2233 44666777777755 8899999999999999998764
Q ss_pred ---hHHHHHHHHHhcCCHHH
Q 044169 626 ---VYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 626 ---~~~~l~~~y~~~g~~~~ 642 (742)
+...+..++...|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555443
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=2.1e-08 Score=86.77 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=71.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33333444444444444444321 11223334444444444455555544444432 123455666666677777777
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 607 KMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777888888888888888888888777643
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=7.9e-08 Score=94.47 Aligned_cols=244 Identities=9% Similarity=0.012 Sum_probs=159.0
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 363 MYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
-..-.|.+..++.-..++........-.-+.++|...|++... ..-.|....+..+..-+ ..+ +..
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHH
Confidence 3445678877777555553122222333345777777777632 11234433444443333 222 556
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG 517 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 517 (742)
.++...+.+ +++......+..+|...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 666665554 44555556788888899999999999988742 2445777788899999999999999999987
Q ss_pred CCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--
Q 044169 518 IRP-----TNSTFLAVLSA--CSHSG--LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI-- 586 (742)
Q Consensus 518 ~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 586 (742)
..| +..+...+..+ ....| ++++|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467 35555666655 33334 899999999998543 35433333444488899999999988875431
Q ss_pred ---------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 587 ---------KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 587 ---------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
.| |+.+...++......|+ .|.+.++++.+..|+++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 14 45566566666666676 888999999999998876443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.94 E-value=7e-09 Score=104.01 Aligned_cols=200 Identities=11% Similarity=0.011 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCCHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGRARKA 506 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 506 (742)
++++|...+... ...|...|++++|...|.+... .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3467788898888888876641 11 35788899999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHH
Q 044169 507 IILFEKMVVEGI---RPT--NSTFLAVLSACSHS-GLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEI 576 (742)
Q Consensus 507 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 576 (742)
+..+++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+..+|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988875311 111 24688888899986 9999999999998753211111 3468889999999999999
Q ss_pred HHHHHHhCC-CCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHH--hcCCH
Q 044169 577 ALIFISNLP-IKPT---A-----PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA-----VYVTLSNMYA--EAGLQ 640 (742)
Q Consensus 577 A~~~~~~~~-~~p~---~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~--~~g~~ 640 (742)
|++.|++.. ..|+ . ..|..+..++...|++++|...++++++++|+... .+..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998753 2222 1 15677777889999999999999999999997544 2445666665 45778
Q ss_pred HHHHHHHHHH
Q 044169 641 ADAEEQRKLM 650 (742)
Q Consensus 641 ~~A~~~~~~m 650 (742)
++|.+.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888888554
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.94 E-value=2.1e-08 Score=100.56 Aligned_cols=166 Identities=11% Similarity=-0.016 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC------
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQN-GRARKAIILFEKMVVEGIRPT------ 521 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 521 (742)
+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 444444555555555555554444331 11 23566777778875 8888888888877653 221
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-----HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH---
Q 044169 522 -NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-----AHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAP--- 591 (742)
Q Consensus 522 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~--- 591 (742)
..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|+..+++.. ..|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2457777788888888888888888886532211221 256677788888888888888888754 344321
Q ss_pred ---HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCch
Q 044169 592 ---IWRPLFAACR--CHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 592 ---~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.+..++.++. ..+++++|...++++++++|....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 2344455554 345688888888888777774433
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=6.4e-08 Score=92.74 Aligned_cols=180 Identities=15% Similarity=0.100 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT--AAD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS----TF 525 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 525 (742)
...+..+...+.+.|++++|...|+++. .|+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 3445556667778888888888888776 232 236677778888888888888888888764 34431 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044169 526 LAVLSACSH------------------SGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLPI 586 (742)
Q Consensus 526 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (742)
..+..++.. .|++++|...|+++++.+ |+. ..+..... .+......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHH----HHHHHHHH--------
Confidence 334444433 345566666666554421 221 11111100 00000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 587 KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
......+...+.+.|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455668899999999999999999999876 5799999999999999999999999887664
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=2.1e-07 Score=91.53 Aligned_cols=240 Identities=9% Similarity=0.033 Sum_probs=165.9
Q ss_pred HHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044169 394 AGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWE 473 (742)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 473 (742)
+-..-.|.+..++.-...+.. ........-+.+++...|+.... ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 445557888888774333211 11223333344666666654421 111233334433333 33333
Q ss_pred HHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 474 DAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 474 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.++. ..+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677787765 345566678888999999999999999998775432344 568888899999999999999999996
Q ss_pred HhcCCCC-----cHHHHHHHHHH--HhhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 550 KEYGILP-----EEAHYSCMVDL--LGRAG--KLEIALIFISNLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 550 ~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
+ ..| +..+...|+.+ ....| ++++|..+|+++. ..|+..+-..++.++.+.|++++|++.++.+.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 346 34555666655 33334 9999999999975 3455334445555899999999999999988876
Q ss_pred ----------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 620 ----------DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 620 ----------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+|+|+.++..++.++...|+ +|.++++++.+...
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 58899999899888888997 89999999987553
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=2.1e-09 Score=95.67 Aligned_cols=139 Identities=8% Similarity=-0.050 Sum_probs=89.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
+...|++++|+..+++... ..|+. ..+..+...|.+.|++++|++.|++.++. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666665543 23332 23445556666666666666666666542 1234556666667777777777
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 576 IALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEF-ISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 576 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
+|+..|++.. ..| +..+|..+...+.+.|+++++.+ .++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777766543 344 46777777778888887766554 4588888888888888888888877774
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.89 E-value=2.7e-08 Score=98.74 Aligned_cols=197 Identities=12% Similarity=0.085 Sum_probs=109.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---
Q 044169 423 TYSSILKACSLLPSLATCEQIHSRIVKS------KFE-SNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-------A--- 485 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--- 485 (742)
++..+...+...|++++|...+..+.+. +-. ....++..+..+|...|++++|.+.|++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444455555555444444332 111 1234555566666666666666666655431 1
Q ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----
Q 044169 486 -DVVSWNSMIKAYSQNGRARKAIILFEKMVVE------GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEY----- 552 (742)
Q Consensus 486 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 552 (742)
...+|..+...|...|++++|+..++++.+. +-.|+. .++..+...+...|++++|.++++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 1335666777777777777777777777653 113332 457777778888888888888888776521
Q ss_pred -CCCCc-HHHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 553 -GILPE-EAHYSCMVDLLGRA------GKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 553 -~~~p~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
...+. ...+..+...+... ..+.++...++... ..| ...++..+...+...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11121 22333333333332 23455555555554 223 3556778888899999999999999998875
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=6.2e-08 Score=83.69 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 568 (742)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677777888888888888888887652 334566777777788888888888888887653 234556777788888
Q ss_pred hhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 569 GRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888887753 2345777888888888999999999999999888874
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=2.2e-07 Score=88.00 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=135.4
Q ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 044169 475 AERVFSQLT-AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG----LVQDGQKVFESMV 549 (742)
Q Consensus 475 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 549 (742)
|.+.|++.. ..++.++..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444433 3466677778888888889999999999888764 45666677777777 6 8999999999886
Q ss_pred HhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 044169 550 KEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPT----APIWRPLFAACRC----HSDLKMAEFISKQIL 617 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 617 (742)
+. -+...+..|..+|.. .+++++|++.|++.....+ +..+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 356677788888877 8899999999998653333 7888888888888 889999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 044169 618 ELDPDDAAVYVTLSNMYAEA-G-----LQADAEEQRKLMKMKEI 655 (742)
Q Consensus 618 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~A~~~~~~m~~~~~ 655 (742)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 55788999999999875 3 89999999999887663
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1.3e-08 Score=114.95 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=119.0
Q ss_pred cCCCCHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHc
Q 044169 432 SLLPSLATCEQIHSRIV--------KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQN 500 (742)
Q Consensus 432 ~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 500 (742)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66777778877777776 321 3445666677777777777777777777665 34556777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 044169 501 GRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
|++++|+..|++..+. .|+. ..+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777763 4543 566667777777777777 7777776552 22345566777777777777777777
Q ss_pred HHHhCC-CCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCchhH
Q 044169 580 FISNLP-IKPT-APIWRPLFAACRCHSD-----LKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 580 ~~~~~~-~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 777654 4454 4455555555544443 3444444444555555555433
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=9e-08 Score=95.52 Aligned_cols=174 Identities=10% Similarity=-0.051 Sum_probs=133.5
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 473 EDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 473 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
+...+.+....+.+...+..+...+.+.|++++|...|++..+. .|+. ..+..+...+...|++++|...++++..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 33444444444445556677778888889999999999888874 5544 6777788888889999999999888754
Q ss_pred cCCCCcHHHHHH-HHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chh
Q 044169 552 YGILPEEAHYSC-MVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD--AAV 626 (742)
Q Consensus 552 ~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 626 (742)
..|+...... ....+.+.|+.++|++.+++.. . +.+...+..+...+...|++++|...++++++.+|++ ...
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 2355443332 2334667778888888887653 3 3468889999999999999999999999999999987 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=9.8e-06 Score=87.05 Aligned_cols=366 Identities=9% Similarity=-0.038 Sum_probs=198.8
Q ss_pred hHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-hHHHHHHHh
Q 044169 199 FDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM-MEDAESVFE 277 (742)
Q Consensus 199 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 277 (742)
++.|..+|+.+... -|. ++.+.+.++|+..+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666666666542 222 7788888888887764 4677777777776666553 344455555
Q ss_pred ccCC------CCcchHHHHHHHHH----hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 278 GLVQ------RNVISWTAIINGFK----QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 278 ~~~~------~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
.... .+...|...+..+. .+++.+.+..+|++........-...|.... .+....+...+..+...
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~-~fE~~~~~~~~~~~~~~--- 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFE-NFELELNKITGKKIVGD--- 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHH-HHHHHHCHHHHHHHHHH---
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHH-HHHHHhccccHHHHHHH---
Confidence 4321 24456666665543 2345666777777776531110111111111 11111111112211111
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc----CCCCChhhHHHHHHHHHhCC--C-----cHHHHHHHHHHhHcC
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM----GKSASSVSWNAQIAGFFRNQ--K-----TEEAIEAFSQMVRND 416 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g 416 (742)
+. +.+..|..+++.. + ..+...|...+.--...+ - .+.+..+|+++....
T Consensus 149 ----------------~~--~~y~~ar~~y~~~~~~~~-~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 149 ----------------TL--PIFQSSFQRYQQIQPLIR-GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp ----------------HH--HHHHHHHHHHHHHHHHHH-TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------Hh--HHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 10 1222233333222 1 123345655444322221 1 234567777777643
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------
Q 044169 417 AACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA-ERVFSQLT------------ 483 (742)
Q Consensus 417 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~------------ 483 (742)
+-+...|...+.-+...|+.+.|..+++...+. +.+...+.. |+...+.++. ..+.+...
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 344666766677777788888888888888877 334333322 2222111111 11111110
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCcHHHHH
Q 044169 484 AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH-SGLVQDGQKVFESMVKEYGILPEEAHYS 562 (742)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 562 (742)
......|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.++ .+...+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHH
Confidence 001235666666666777888899999888 32 12233444322222112 2368889999988877543 2344566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 563 CMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
..++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888888888888998888874 3567788888877788888888888887765
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=1.7e-07 Score=88.51 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=98.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
+..+|.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|++.|++..+. -+.+...+..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 888899999999999999999884 554 467888889999999999999999998763 234566788888888766
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 572 GK--LEIALIFISNLPIKPTAP--IWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 572 g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
|+ .+.+...++... .|++. .+..+..++...|++++|+..++++++++|+ ......+.
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 54 445666676654 44443 3444555677789999999999999999994 43333333
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=8.8e-08 Score=106.05 Aligned_cols=159 Identities=11% Similarity=0.029 Sum_probs=124.0
Q ss_pred cCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044169 469 CGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999876 335678999999999999999999999999984 555 57788899999999999999999
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhc
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IK-PTAPIWRPLFAACRCH---SDLKMAEFISKQILEL 619 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 619 (742)
+++..+. .+.+...+..+..+|.+.|++++|++.+++.. .. .+...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999763 23456788999999999999999999998864 33 4678888999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 044169 620 DPDDAAVYVTLS 631 (742)
Q Consensus 620 ~p~~~~~~~~l~ 631 (742)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=1.2e-08 Score=90.77 Aligned_cols=122 Identities=10% Similarity=0.047 Sum_probs=100.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHS 604 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 604 (742)
|...+...|++++|++.++... ...|+. ..+..+..+|.+.|++++|++.|++.. ..| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999998774 334443 346678999999999999999999864 444 6889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHHHh
Q 044169 605 DLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQ-RKLMKM 652 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~ 652 (742)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 576665
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=7.3e-08 Score=85.26 Aligned_cols=102 Identities=14% Similarity=0.040 Sum_probs=88.9
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 553 GILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 553 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
.+.|+ ...+..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 4467788888999999999999998864 344 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++.+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988644
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=4e-08 Score=87.03 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34567778888999999999999998764 3447888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 044169 635 AEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887543
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=2.5e-07 Score=104.32 Aligned_cols=167 Identities=11% Similarity=-0.060 Sum_probs=93.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 044169 467 NKCGSWEDAERVFSQLT-----------AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSH 534 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 534 (742)
...|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..|+++.+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44566666666665543 233445555666666666666666666666553 333 3455555556666
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 612 (742)
.|++++|++.|++..+. -+.+...+..+..+|.+.|++++ ++.|++.. ..| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665542 12234455566666666666666 65555542 222 455566666666666666666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 613 SKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
++++++++|++..++..++.+|...|
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 66666666666666666666654433
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1.2e-07 Score=81.30 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~ 601 (742)
.+......+.+.|++++|++.|++.++. -+.+...|..+..+|.+.|++++|++.+++.. . +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444455555555555555555555442 12234455555555555555555555555432 2 224555666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
..|++++|...++++++++|+++.++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6666666666666666666666655555544
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=2.9e-07 Score=92.90 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=145.1
Q ss_pred CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 399 NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 3556677777766554311 10 0 11145666666666543 3456677777777777
Q ss_pred HHhcCC-----CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHHHHHH
Q 044169 479 FSQLTA-----AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGI---RPT--NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 479 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 765541 11 23677788888889999999999888765310 122 2467778888888 999999999
Q ss_pred HHHhHHhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 044169 545 FESMVKEYGILP----EEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 545 ~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 612 (742)
|++..+...-.. ...++..+..+|.+.|++++|++.|++.. ..++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998865321111 13567888999999999999999988754 1122 22556666677788999999999
Q ss_pred HHHHHhcCCCCch-----hHHHHHHHHHhcCCHHHHHHH
Q 044169 613 SKQILELDPDDAA-----VYVTLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 613 ~~~~~~~~p~~~~-----~~~~l~~~y~~~g~~~~A~~~ 646 (742)
+++++ +.|.... ....++.+| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 8886433 244555555 56777666553
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.3e-07 Score=86.53 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=60.9
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 577 ALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD--AAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 577 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|++.+++.. ..| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555432 234 57888888889999999999999999999999864 5689999999999999999999888765
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=1.9e-07 Score=88.09 Aligned_cols=158 Identities=8% Similarity=-0.015 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHhHHhcCC
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLA----------------VLSACSHSGLVQDGQKVFESMVKEYGI 554 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~~~ 554 (742)
.....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|+..|++..+. -
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 3445566778888888888877763 5554 34555 788899999999999999999763 2
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 555 LPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSD--LKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+.+...+..+..+|...|++++|++.|++.. ..| +..+|..+...+...|+ .+.+...++++....| ....+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHH
Confidence 3467789999999999999999999999864 345 67888888888765553 4455666666654433 23356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.++...|++++|...+++..+..
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888999999999999999987644
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=2.3e-07 Score=102.73 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILF 510 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 510 (742)
.|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777766543 3446677777777777888888888777665 234557777777777888888888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 044169 511 EKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA---GKLEIALIFISNL 584 (742)
Q Consensus 511 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 584 (742)
++..+. .|+ ...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 877764 343 456777777777788888888888777653 223456677777777777 7788887777764
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=6.1e-07 Score=84.83 Aligned_cols=120 Identities=14% Similarity=-0.047 Sum_probs=64.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|.+.|++. +.|+...+..+..+|.+.|++++|++.+++.. .+.+...|..+...+...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 33444445555555554433 12344445555555555555555555554432 122445555555556666666
Q ss_pred HHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 607 KMAEFISKQILELDPDDA----------------AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++|...++++++..|++. .++..++.+|...|++++|.+.+++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666555544 56666666666666666666666665543
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=2.4e-06 Score=85.42 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=116.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHH
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEG-IRPTNS----TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSC 563 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 563 (742)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..++++.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888887632 122211 2334566677778889999888888763222233 236888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-----I---KPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD------AAVYV 628 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 628 (742)
+..+|...|++++|+..++++. . .+. ..++..+...|...|++++|...+++++++.++. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888999999988888887653 1 111 3367888889999999999999999999864322 67899
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 044169 629 TLSNMYAEAGL-QADAEEQRKLMK 651 (742)
Q Consensus 629 ~l~~~y~~~g~-~~~A~~~~~~m~ 651 (742)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888775
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=3.1e-07 Score=80.58 Aligned_cols=97 Identities=13% Similarity=-0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IK-PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|+..|++.. .. .+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3456667788889999999999988754 33 468889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 044169 636 EAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~~ 654 (742)
..|++++|.+.++...+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887543
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=2.8e-07 Score=78.84 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=89.8
Q ss_pred CCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 554 ILPEE-AHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 554 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+.|+. ..+......|.+.|++++|++.|++.. . +.+...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44543 467788999999999999999999864 3 44688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+|...|++++|.+.|++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987643
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=4.9e-06 Score=82.59 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC-----
Q 044169 501 GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ--DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK----- 573 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~----- 573 (742)
+++++++.+++++.+.. +-+...|..-...+.+.|.++ ++++.++.+.+. -+-|...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555431 222334444444444444444 555555555432 12233344444444444443
Q ss_pred -HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCHHHHHHH
Q 044169 574 -LEIALIFISNLP--IKPTAPIWRPLFAACRCHSD-LKMAEFISKQILELD---PDDAAVYVTLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 574 -~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~A~~~ 646 (742)
++++++.++++. .+.|...|+.+...+.+.|. .+....+++++++++ |.++.++..++++|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555554432 22345556555555555554 233444555555544 55666666666666666666666666
Q ss_pred HHHHHh
Q 044169 647 RKLMKM 652 (742)
Q Consensus 647 ~~~m~~ 652 (742)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=2.4e-07 Score=93.55 Aligned_cols=196 Identities=7% Similarity=-0.050 Sum_probs=148.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
.|++++|.++++...+..- .. .+...+++++|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888888776421 11 01115788888888765 366788999999999999987
Q ss_pred HHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--C--cHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 514 VVE----GIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL--P--EEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 514 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
.+. |-.+. ..+|..+...|...|++++|+..|++..+...-. + ...++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 21111 2468888889999999999999999876532111 1 13567889999999 9999999999875
Q ss_pred C----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 585 P----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA------AVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 585 ~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
. ...+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 1111 45678888899999999999999999999865432 36778888999999999999999988
Q ss_pred H
Q 044169 651 K 651 (742)
Q Consensus 651 ~ 651 (742)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=1.5e-06 Score=83.13 Aligned_cols=183 Identities=13% Similarity=-0.029 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-ch---HHHH
Q 044169 421 EFTYSSILKACSLLPSLATCEQIHSRIVKSKFE-S-NVHVGSSLIEAYNKCGSWEDAERVFSQLT--AAD-VV---SWNS 492 (742)
Q Consensus 421 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~ 492 (742)
...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|...|++.. .|+ .. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788899999999999999886422 1 23577888999999999999999999876 333 22 4555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 493 MIKAYSQ------------------NGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 493 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5556554 57899999999999984 56653 2221111 001111110
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.....+...|.+.|++++|+..|+++. ..|+ ...+..+..++.+.|+.++|.+.++.+....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 122356788999999999999998764 3343 24678888899999999999999999999888654
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=1.2e-06 Score=87.58 Aligned_cols=162 Identities=6% Similarity=-0.037 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCc--H
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN------STFLAVLSACSHSGLVQDGQKVFESMVKEYGI--LPE--E 558 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~ 558 (742)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|.+.+++..+...- .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566777888888888888877764221 22 12334455667778888888888887642111 111 3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------C
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP----IKPT-----APIWRPLFAACRCHSDLKMAEFISKQILELDPD------D 623 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 623 (742)
..++.+...|...|++++|+..+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888888999999998888887643 1222 257888888899999999999999999886431 1
Q ss_pred chhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 044169 624 AAVYVTLSNMYAEAGLQADA-EEQRKLMK 651 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A-~~~~~~m~ 651 (742)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66889999999999999999 77777665
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=8.3e-07 Score=79.89 Aligned_cols=125 Identities=9% Similarity=-0.044 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRC 602 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 602 (742)
+..+...+...|++++|...|+...+. .+.+...+..++.++...|++++|++.+++.. .+.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444555566666666666666666542 22345566667777777777777777776543 23357778888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNM--YAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~m~ 651 (742)
.|++++|...++++++..|++...+..+..+ +...|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999988887554444 888999999999988765
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=3.2e-05 Score=76.77 Aligned_cols=228 Identities=7% Similarity=-0.004 Sum_probs=167.4
Q ss_pred CCCcHHHHHHHHHHhHcCCCCC-hHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 044169 399 NQKTEEAIEAFSQMVRNDAACD-EFTYSSILKACSLLP--SLATCEQIHSRIVKSKFESNVHVGSSLIEAY----NKC-- 469 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~-- 469 (742)
....++|++++.+++..+ |+ ...|+.--..+...+ .++++..+++.+...+ +-+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 344467888888877753 43 344555555556666 8888888888887764 34445555444444 444
Q ss_pred -CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------
Q 044169 470 -GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR--KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGL------ 537 (742)
Q Consensus 470 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 537 (742)
++++++.++++++. +.|..+|+.-...+.+.|+++ ++++.++++.+.. .-|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 78899999998886 556678888888888888888 9999999999863 3345667666666666665
Q ss_pred HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 044169 538 VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI-ALIFISNLPI-----KPTAPIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 538 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
++++++.++.++. -.+-|...|+.+..++.+.|+..+ +.++.++... ..++..+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8999999998876 334567788888888888888544 5567666541 3467889999999999999999999
Q ss_pred HHHHHHh-cCCCCchhHHHHHH
Q 044169 612 ISKQILE-LDPDDAAVYVTLSN 632 (742)
Q Consensus 612 ~~~~~~~-~~p~~~~~~~~l~~ 632 (742)
+++.+.+ .+|-....+...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999997 79987777766554
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.57 E-value=1.9e-06 Score=85.84 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHH-HHHHHH
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNS-MIKAYS 498 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-li~~~~ 498 (742)
..+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...++++. .|+...... ....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344455555556666666666666665543 3345566666667777777777777777665 233322222 122344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
+.++.++|+..+++.... .|+ ...+..+..++...|++++|...|.++.+...-..+...+..++.+|...|+.++|
T Consensus 197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 555666666666666653 343 35566666666666777777766666655321112244566666666666666666
Q ss_pred HHHHHh
Q 044169 578 LIFISN 583 (742)
Q Consensus 578 ~~~~~~ 583 (742)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=1.1e-06 Score=74.38 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAAC 600 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 600 (742)
..+..+...+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|...++++. .+.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555666666666666666666542 12344556666667777777777777766543 234567788888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888877654
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.6e-07 Score=93.34 Aligned_cols=190 Identities=9% Similarity=-0.014 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSA 531 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 531 (742)
...+..+...|.+.|++++|...|++.. +.+...|..+..+|.+.|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455666777777788888888777665 335667777888888888888888888887763 454 3567777778
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
+...|++++|...|+...+.. |+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 888888888888887775421 211 011111111111111111111 2222323344443333 222 268889999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 044169 611 FISKQILELDPDDAAVYVTLSNMYAEA-GLQADAEEQRKLMKMK 653 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 653 (742)
+.++++++++|++......+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998888888888888777 7799999999888653
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=4.6e-07 Score=82.90 Aligned_cols=156 Identities=11% Similarity=-0.010 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA-CSH 534 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 534 (742)
...+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..+++.... .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3455666778888888888888776 345667888888888888888888888887653 3443322222111 112
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT---APIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~a~ 610 (742)
.+...+|...+++..+. .+.+...+..+..+|...|++++|+..|+++. ..|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223467777777652 22346777888888888888888888887753 3443 557888888888888888888
Q ss_pred HHHHHHHh
Q 044169 611 FISKQILE 618 (742)
Q Consensus 611 ~~~~~~~~ 618 (742)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=9.5e-07 Score=75.61 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAAC 600 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 600 (742)
..+..+...+...|++++|.+.+++..+. .+.+...+..+..++...|++++|++.+++.. .+.+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555556666667777777777666542 22345566667777777777777777776643 233577788888889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
...|++++|...++++++..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888875
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=9.1e-07 Score=76.12 Aligned_cols=114 Identities=13% Similarity=0.016 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 601 (742)
.+..+...+...|++++|.+.|++..+ ..+.+...+..+..+|...|++++|++.+++.. .+.+...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344455555555555555555555543 112234455555566666666666666665532 2335667777888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
..|++++|...++++++.+|++...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888877664
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=7.6e-07 Score=81.41 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=85.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHH-HHHcCCH--H
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAA-CRCHSDL--K 607 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~-~~~~g~~--~ 607 (742)
...|++++|...++...+. .+.+...+..+..+|...|++++|+..|++.. . +.+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456667777777766552 23355667777777777777777777777653 2 2356677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+|...++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888999999999988888887654
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.52 E-value=1.9e-06 Score=81.31 Aligned_cols=145 Identities=10% Similarity=-0.032 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLV 538 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 538 (742)
+..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455666677777777777777666666667777777777777777777777666542 22335566666666666666
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQIL 617 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 617 (742)
++|.+.|+...+...-.+... +...| +...| ....+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666666654211111000 00000 01122 24677888888999999999999999999
Q ss_pred hcCCCC
Q 044169 618 ELDPDD 623 (742)
Q Consensus 618 ~~~p~~ 623 (742)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999865
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1e-06 Score=75.36 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456677778888888888888887753 33467888888889999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 044169 636 EAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~~ 654 (742)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999998877543
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=5.3e-06 Score=78.32 Aligned_cols=172 Identities=9% Similarity=-0.055 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-AADVVSWNSMIKAYSQNG----RARKAIILFEKMV 514 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 514 (742)
|.+.|....+.| +...+..|..+|...+++++|.+.|++.. ..++..+..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 55566667777777788888888887765 3456677777777776 6 8888999998887
Q ss_pred HcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCc---HHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 044169 515 VEGIRPTNSTFLAVLSACSH----SGLVQDGQKVFESMVKEYGILPE---EAHYSCMVDLLGR----AGKLEIALIFISN 583 (742)
Q Consensus 515 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 583 (742)
+.| +...+..+...|.. .+++++|.+.|++..+ ..|+ ...+..|..+|.. .+++++|++.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45666777777776 7889999999988754 2332 6677888888888 7889999999987
Q ss_pred CC-CCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 044169 584 LP-IKPTAPIWRPLFAACRCH-S-----DLKMAEFISKQILELDP 621 (742)
Q Consensus 584 ~~-~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 621 (742)
.. ..++...+..|...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 64 225666777777777643 3 89999999999988864
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=1.5e-06 Score=88.70 Aligned_cols=94 Identities=13% Similarity=-0.044 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...|..+..+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|...++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567888888999999999998888764 33468889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHH-HHHHHHHH
Q 044169 636 EAGLQADA-EEQRKLMK 651 (742)
Q Consensus 636 ~~g~~~~A-~~~~~~m~ 651 (742)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44555553
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=2.5e-05 Score=83.95 Aligned_cols=344 Identities=10% Similarity=-0.006 Sum_probs=178.5
Q ss_pred hCC-ChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hhHHHHHH
Q 044169 265 KCG-MMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRN-SHMGYMFH 342 (742)
Q Consensus 265 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~ 342 (742)
+.| +++.|+.+|+.+.. .+-. |+++.+..+|++.... .|+...|..-+.-..+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 36667666665432 2211 7888888898888764 4788887777776665553 35566777
Q ss_pred HHHHHh-CCC-CchHHHHHHHHHHHh----CCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcC
Q 044169 343 AQVIKR-GMA-LGDFVGTAIVDMYSG----LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRND 416 (742)
Q Consensus 343 ~~~~~~-g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 416 (742)
+..+.. |.. .+..+|...+..+.. .|+++.+.++|++.-..|.. .+..+-..| ..+...
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y-------------~~fE~~- 136 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDF-------------ENFELE- 136 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHH-------------HHHHHH-
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHH-------------HHHHHH-
Confidence 776664 433 356777777765542 35677788888776212211 111111111 111110
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CC-----HHHHHHHHHhcC---CCC
Q 044169 417 AACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC--GS-----WEDAERVFSQLT---AAD 486 (742)
Q Consensus 417 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~--g~-----~~~A~~~~~~~~---~~~ 486 (742)
.+..+...++.... +.+..|..++..+...--..+...|...++.-... |- .+.+..+|+++. ...
T Consensus 137 --~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~ 212 (493)
T 2uy1_A 137 --LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA 212 (493)
T ss_dssp --HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred --hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC
Confidence 01111111111110 12233344443333210001223444444332211 00 234555666654 344
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--------CCC--
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG--------ILP-- 556 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p-- 556 (742)
...|...+.-+.+.|+.++|..++++.... |....+......+...+. +++.+.+..- ..+
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHHHHTC----------CHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHHHHHHhhccchhhhhccc
Confidence 567777777777888888888888888875 544322211111111111 1222221110 001
Q ss_pred -cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 557 -EEAHYSCMVDLLGRAGKLEIALIFISNLPIK-PTAPIWRPLFAAC-RCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 557 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
....|...++.+.+.|..+.|.++|++...+ .+...|......- ...++.+.|..+++.+++..|+++..+...++.
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1235666677777777888888888776311 1334443322222 223368888888888888778777777777777
Q ss_pred HHhcCCHHHHHHHHHHH
Q 044169 634 YAEAGLQADAEEQRKLM 650 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m 650 (742)
..+.|+.+.|..+|+.+
T Consensus 364 e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 77888888888888775
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=3.9e-06 Score=75.53 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3345555556666666666666665542 222 45566666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 044169 636 EAGLQADAEEQRKLMKM 652 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~ 652 (742)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666654
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=1.2e-06 Score=74.33 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=82.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778889999999999998764 344 68889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
++++|...+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999887644
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=2.8e-06 Score=74.98 Aligned_cols=105 Identities=6% Similarity=-0.084 Sum_probs=86.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 518 IRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 518 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
+.|+. ..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++.. ..| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45554 45777778888999999999999998763 23457788889999999999999999998764 344 578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.+..++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999543
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=3.1e-06 Score=73.30 Aligned_cols=99 Identities=13% Similarity=-0.068 Sum_probs=84.1
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 556 PEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
.+...+..+...+...|++++|+..|++.. .+.+...|..+...+...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456677778888888888888888887653 234577888888899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 044169 634 YAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887543
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=7.3e-07 Score=78.77 Aligned_cols=109 Identities=13% Similarity=0.024 Sum_probs=81.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 518 IRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 518 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
+.|+. ..+..+...+...|++++|...|+...+. -+.+...|..+..+|...|++++|++.|++.. ..| ++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34543 45666667777888888888888877652 23456677778888888888888888887753 333 577888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
.+..++...|++++|...+++++++.|+++....
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 8888899999999999999999999997776543
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=3.6e-05 Score=76.73 Aligned_cols=158 Identities=9% Similarity=-0.034 Sum_probs=116.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Cch------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAA---DVV------SWNSMIKAYSQNGRARKAIILFEKMVVEGIR-PT----NSTFLA 527 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 527 (742)
.+..+...|++++|..++++.... +.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788889999999999876521 111 2334666677778999999999999874222 22 125888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhc----CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEY----GILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-------IKPT-APIWR 594 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 594 (742)
+..+|...|++++|..+|+++.+.. +..+. ..++..+..+|.+.|++++|++.+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887421 22222 2367889999999999999999887653 1222 66788
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhc
Q 044169 595 PLFAACRCHS-DLKMAEFISKQILEL 619 (742)
Q Consensus 595 ~l~~~~~~~g-~~~~a~~~~~~~~~~ 619 (742)
.+..++...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 569999999998774
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=7.7e-06 Score=79.27 Aligned_cols=123 Identities=11% Similarity=-0.042 Sum_probs=70.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTA----PIWRPLFAACRCH 603 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 603 (742)
...++...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34455566666666666665532 2243334444555666666666666666654422322 2455555566666
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 604 SDLKMAEFISKQILELD--PD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666432 33 3345566666666666666666666666543
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=1.8e-06 Score=71.53 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD--DAAVYVTLSNM 633 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 633 (742)
...+..+...+.+.|++++|+..+++.. .+.+...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3455667777788888888888877653 2346778888888899999999999999999999998 89999999999
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCC
Q 044169 634 YAEA-GLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 634 y~~~-g~~~~A~~~~~~m~~~~~ 655 (742)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876554
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=1.3e-05 Score=80.08 Aligned_cols=162 Identities=10% Similarity=-0.039 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Cc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTA--A-DV------VSWNSMIKAYSQNGRARKAIILFEKMVVEGI---RPT--NS 523 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 523 (742)
.+...+..+...|++++|.+.+.+... + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566777888888888888875431 1 11 1233455566778899999999988875321 122 24
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-CH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKE---YGILPE--EAHYSCMVDLLGRAGKLEIALIFISNLP-------IKP-TA 590 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 590 (742)
+++.+...|...|++++|...++++.+. .+..+. ..++..++.+|.+.|++++|++.+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6788888888999999999999888632 221221 2477888889999999999998887643 111 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 044169 591 PIWRPLFAACRCHSDLKMA-EFISKQILEL 619 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 619 (742)
.++..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7778887764
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=5.2e-06 Score=69.34 Aligned_cols=95 Identities=14% Similarity=-0.020 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
..+..++..+...|++++|.+.+++.. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555556666666666666665542 223455666666666666666667666666666666666666667777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 044169 637 AGLQADAEEQRKLMKMK 653 (742)
Q Consensus 637 ~g~~~~A~~~~~~m~~~ 653 (742)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777666666543
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=4e-06 Score=78.18 Aligned_cols=167 Identities=9% Similarity=-0.024 Sum_probs=102.4
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLTA---ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 542 (742)
....|+++++.+.|+.-.. .....|..+...+...|++++|+..|++..+. .|+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH
Confidence 3444556666555543321 13345666677777777777777777777763 2322100000 000000
Q ss_pred HHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 543 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.. .....+..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|...++++++++
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 013566777888888888888888887753 33467888889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHH-HHHHHHHhC
Q 044169 621 PDDAAVYVTLSNMYAEAGLQADAE-EQRKLMKMK 653 (742)
Q Consensus 621 p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~~~ 653 (742)
|+++.++..++.++...|+.+++. ..++.|-..
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888877 455555443
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=8.1e-06 Score=68.14 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=73.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 601 (742)
.+..+...+...|++++|...++...+. .+.+...+..+..++.+.|++++|...+++.. .+.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555555566666666666665442 12344556666666666677777766666542 2235677788888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999998888777776654
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=5.3e-06 Score=70.09 Aligned_cols=97 Identities=21% Similarity=0.210 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..++..+.+.|++++|.+.++++. .+.+..++..+...+...|++++|...++++++..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4678888999999999999999998864 34468889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 044169 636 EAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~~ 654 (742)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987643
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.32 E-value=1.4e-06 Score=84.43 Aligned_cols=137 Identities=12% Similarity=-0.047 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDL 567 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~ 567 (742)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344567778889999999999888764 46555555555678889999999999986532 11 121 2357778889
Q ss_pred HhhcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 568 LGRAGKLEIALIFISNLPIK---PT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
+.+.|++++|+..|++.... |. ...+.....++.+.|+.++|...++++...+|+ +.....|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999886422 42 346777888899999999999999999999996 66555553
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=2.8e-06 Score=72.73 Aligned_cols=94 Identities=7% Similarity=-0.010 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-------hhHHH
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA-------AVYVT 629 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 629 (742)
..+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 346678888888999999998888754 344 678899999999999999999999999999987654 36788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
++.+|...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999988765
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=3.7e-06 Score=73.56 Aligned_cols=108 Identities=16% Similarity=-0.032 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~ 601 (742)
.+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|+..|++.. . +.++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455556667777777777777777652 23355667777777777888888877777653 2 335677788888889
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
..|++++|...+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999988877765554433
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=4.6e-06 Score=71.56 Aligned_cols=100 Identities=10% Similarity=-0.016 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 555 LPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
+.+...+..+...+.+.|++++|++.+++.. ..| +...|..+...+...|++++|...++++++..|+++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456678889999999999999999998853 344 68889999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 044169 633 MYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 633 ~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+|...|++++|.+.+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999887643
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=4.4e-06 Score=76.21 Aligned_cols=127 Identities=5% Similarity=0.033 Sum_probs=96.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH-HhhcCCH--
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL-LGRAGKL-- 574 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 574 (742)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888888888887752 3345678888888888999999999998887632 3356677778888 7788988
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
++|+..+++.. ..| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999888764 334 577888888899999999999999999999999876544
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=8e-06 Score=69.60 Aligned_cols=110 Identities=10% Similarity=-0.052 Sum_probs=72.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 601 (742)
.+......+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555566666666666666666542 22345566666666777777777776666543 233 5677778888888
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELD------PDDAAVYVTLSNMYA 635 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~ 635 (742)
..|++++|...++++++++ |++......+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 8888888888888888888 777776666665543
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=1.1e-05 Score=75.23 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=54.5
Q ss_pred hcCCHHHHHH---HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHH
Q 044169 468 KCGSWEDAER---VFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE----GIRPTN-STFLAVLSACSHSGLVQ 539 (742)
Q Consensus 468 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~ 539 (742)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++..+. |..|.. ..+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345555666666666666666666655441 111111 33555555566666666
Q ss_pred HHHHHHHHhHHhcCCCC-c----HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 540 DGQKVFESMVKEYGILP-E----EAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
+|.+.+++..+...-.+ + ...+..+..++...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666655543211111 1 12344444555555555555554443
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=2e-05 Score=73.37 Aligned_cols=154 Identities=10% Similarity=0.021 Sum_probs=114.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-cHHHHHHHHHHHhhcCC
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY---GILP-EEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g~ 573 (742)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555431 11234678888889999999999999999886522 2222 24467888999999999
Q ss_pred HHHHHHHHHhCC----CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc----hhHHHHHHHHHhcC
Q 044169 574 LEIALIFISNLP----IKP-T----APIWRPLFAACRCHSDLKMAEFISKQILELD--PDDA----AVYVTLSNMYAEAG 638 (742)
Q Consensus 574 ~~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~y~~~g 638 (742)
+++|.+.+++.. ..+ + ...+..+...+...|++++|...++++++.. ..++ .++..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 999999987653 122 2 3457778888999999999999999998753 2222 34688999999999
Q ss_pred CHHHHHHHHHHHHh
Q 044169 639 LQADAEEQRKLMKM 652 (742)
Q Consensus 639 ~~~~A~~~~~~m~~ 652 (742)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887764
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=1.8e-05 Score=70.84 Aligned_cols=126 Identities=10% Similarity=-0.068 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG 569 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 569 (742)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 4444455555555555555555555431 223344555555555555555555555555442 1223445555555555
Q ss_pred hcCCHHHHHHHHHhCC-CCC-CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHh
Q 044169 570 RAGKLEIALIFISNLP-IKP-TAPIWRPLFA--ACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 618 (742)
+.|++++|.+.+++.. ..| +...+..+.. .+...|++++|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 5566666555555432 122 3333322222 24455666666666655544
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=8.9e-06 Score=73.13 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAAC 600 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 600 (742)
..+..+...+...|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..|++.. ..| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44566666677777777777777777652 22355667777778888888888888777653 233 578888999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
...|++++|...++++++++|+++..+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999998886655443
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=2.1e-05 Score=68.87 Aligned_cols=109 Identities=9% Similarity=-0.054 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPL 596 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l 596 (742)
..+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|++++|++.+++.. . +.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444455555555555555555432 2233 3445555556666666666666655432 2 2345666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..++...|++++|...++++++++|++..++..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777778888888888888888887776666665554
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.23 E-value=1.1e-05 Score=68.63 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+...+..++..+...|++++|.+.+++.. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45567888899999999999999998864 3346888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 044169 635 AEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.2e-05 Score=70.37 Aligned_cols=99 Identities=18% Similarity=0.047 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 556 PEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
.+...+..+...+...|++++|++.|++.. ..|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 356678889999999999999999999853 5676 67788888899999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00013 Score=73.17 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHH------
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQN-G-RARKAIILFEKMVVEGIRP-TNSTFLAVLSACSHSGLVQ------ 539 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~------ 539 (742)
++++.+.++.+. ..+..+|+.-...+.+. + ++++++++++++.+. .| |...|+.-...+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhh
Confidence 444444444443 22333444444443333 3 445555555555542 22 2233333333333333332
Q ss_pred --HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC-------HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH--
Q 044169 540 --DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK-------LEIALIFISNLP--IKPTAPIWRPLFAACRCHSDL-- 606 (742)
Q Consensus 540 --~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-- 606 (742)
++++.++++.+. -+-|...|+....++.+.|+ ++++++.+++.. .+.|...|+-+-..+.+.|..
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 555555555542 22344455555555555554 456666665432 233566666655555554432
Q ss_pred ------------------HHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 607 ------------------KMAEFISKQILELD------PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 607 ------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.........+.... +.++.+...|+++|.+.|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22233333332222 45777889999999999999999999999864
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=7.4e-06 Score=71.55 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILEL-------DPDDAAVY----VTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888889999999999999999988 99999999 9999999999999999999998875
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=7.2e-06 Score=70.08 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-IKPT-A---PIWRPLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYA 635 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 635 (742)
+...+.+.|++++|.+.|++.. ..|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4455666666666666666543 1232 2 356666667777777777777777777777776 666777777788
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 044169 636 EAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~ 653 (742)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888887777777653
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=8.6e-06 Score=87.35 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=91.7
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 607 (742)
..+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456677888888888877653 23346677888888888888888888887753 344 5778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHHH
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNM--YAEAGLQADAEEQRKL 649 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 649 (742)
+|++.++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8999999999999874
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.4e-05 Score=69.04 Aligned_cols=112 Identities=7% Similarity=-0.138 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044169 521 TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFA 598 (742)
Q Consensus 521 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 598 (742)
+...+..+...+...|++++|...|+...+. .+.+...+..+..+|...|++++|+..+++.. .+.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666666666666666666666542 22345566666777777777777777766543 2335677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 044169 599 ACRCHSDLKMAEFISKQILELDPD-----DAAVYVTLSNMY 634 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~y 634 (742)
++...|++++|...+++++++.|+ +......+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888776 444444444443
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=2.3e-05 Score=83.62 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446777777788888888888888877763 2322100 0 011100 000 11356778888
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 044169 567 LLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 644 (742)
+|.+.|++++|+..+++.. .+.+...|..+..+|...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764 33468889999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHHh
Q 044169 645 E-QRKLMKM 652 (742)
Q Consensus 645 ~-~~~~m~~ 652 (742)
+ .++.|-.
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4555543
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.11 E-value=2.4e-05 Score=70.04 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577888888899999999999999999999999999999999999999999999999887754
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=0.0014 Score=65.57 Aligned_cols=238 Identities=13% Similarity=0.029 Sum_probs=162.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP-SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
+.+-....+.+..++|++++++++..+ +-+...|+.--..+...| .++++..+++.+...+ +-+..+|+.-..++.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334445566678999998888764 223444555555555566 5889999998888765 5566777776666666
Q ss_pred c-C-CHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044169 469 C-G-SWEDAERVFSQLTA---ADVVSWNSMIKAYSQNGRAR--------KAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535 (742)
Q Consensus 469 ~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 535 (742)
. + +++++.++++++.. .|..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6 6 88899999998874 35557776665655555555 8999999999863 33556777777777777
Q ss_pred Cc-------HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH--------------------HHHHHHHHhCCC--
Q 044169 536 GL-------VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL--------------------EIALIFISNLPI-- 586 (742)
Q Consensus 536 g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~-- 586 (742)
+. ++++++.+++++. -.+-|...|+.+-..+.+.|+. .+..++..++..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 65 7888888888876 2344566777777777766653 344444444431
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCchhHHHHHH
Q 044169 587 ------KPTAPIWRPLFAACRCHSDLKMAEFISKQIL-ELDPDDAAVYVTLSN 632 (742)
Q Consensus 587 ------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 632 (742)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2567788889999999999999999999997 568865555554443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=1.3e-05 Score=68.45 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHH
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD-------AAVYVT 629 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 629 (742)
..+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667778888888888888887653 33467778888888999999999999999999987765 788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++.+|...|++++|.+.++.+.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988763
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.00092 Score=66.65 Aligned_cols=178 Identities=10% Similarity=0.041 Sum_probs=96.4
Q ss_pred HHHHHHHHhcC---CCCchHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHH
Q 044169 473 EDAERVFSQLT---AADVVSWNSMIKAYSQNG--RARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGL-VQDGQKVFE 546 (742)
Q Consensus 473 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~ 546 (742)
+++..+++.+. +.+..+|+.-...+...| ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 44444444443 334445555555555555 3566666666666532 2233444444444444454 456666666
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhc--------------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc-------
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRA--------------GKLEIALIFISNLP--IKPTAPIWRPLFAACRCH------- 603 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~------- 603 (742)
.+.+. -+-|...|+....++.+. +.++++++.+.+.. .+.|..+|+-+-..+.+.
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 66542 223444444444444333 34666666666543 233566666555554443
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH---hcCCHHHHHHHHHHHHhC
Q 044169 604 ----SDLKMAEFISKQILELDPDDAAVYVTLSNMYA---EAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 604 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~~A~~~~~~m~~~ 653 (742)
+.++++++.++++++++|++...+..++.... ..|..+++...+.++.+-
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34677888888888888877665555543322 356667777777776653
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=3e-05 Score=76.74 Aligned_cols=111 Identities=6% Similarity=-0.139 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 044169 521 TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFA 598 (742)
Q Consensus 521 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 598 (742)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456677777788888888888888887653 22356677778888888888888888887743 344 4667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
++...|++++|...++++++++|+++..+...++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 88888888888888888888877665444433333
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=4.9e-06 Score=69.93 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044169 571 AGKLEIALIFISNLP-I---KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 645 (742)
.|++++|+..|++.. . .| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666655543 2 13 244566666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 044169 646 QRKLMKM 652 (742)
Q Consensus 646 ~~~~m~~ 652 (742)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.0009 Score=66.75 Aligned_cols=193 Identities=10% Similarity=0.070 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC-HHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG--SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR-ARKAIILF 510 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 510 (742)
++++..+++.+.... +-+..+|+.-.-++.+.| .++++..+++++. ..|..+|+--...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666777666654 456667776666666666 4788888888776 4566678777777777777 58888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc-----
Q 044169 511 EKMVVEGIRPTNSTFLAVLSACSHS--------------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA----- 571 (742)
Q Consensus 511 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----- 571 (742)
+++.+.. +-|...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 8888752 33445555554444333 4578888888887652 334555666555555544
Q ss_pred ------CCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 572 ------GKLEIALIFISNLP-IKPTAPIWRPLFAAC-----RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 572 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+.++++++.++++. ..||. .|..+..+. ...+..++....+.++++++|.....|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 45788888888764 55654 454332222 2357788999999999999997777776665443
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.03 E-value=3.4e-05 Score=78.55 Aligned_cols=127 Identities=10% Similarity=0.027 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT----------------NSTFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
..|..+...|.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35556666666677777777777766663 333 256777777777777777777777777652
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 044169 552 YGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMA-EFISKQILE 618 (742)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 618 (742)
.+.+...|..+..+|...|++++|+..|++.. ..| +...+..+...+...|+.+++ ...+++++.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355667777777888888888887777653 333 566777777777777777777 345555544
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=5.2e-05 Score=64.47 Aligned_cols=106 Identities=7% Similarity=-0.081 Sum_probs=56.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC----HHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-----IKPT----APIWRPLFA 598 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~ 598 (742)
+...+...|++++|...|+...+. .+.+...+..+..+|...|++++|...+++.. ..++ ..++..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333344444444444444444331 12233334444444444444444444444332 0112 456667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.+...|++++|...++++++..| ++.....+..++..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77788888888888888888877 56666666655443
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=2.2e-05 Score=67.01 Aligned_cols=108 Identities=14% Similarity=0.059 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCcHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYG-ILPEEAHYSCMVD 566 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~l~~ 566 (742)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.+++.++... ..++ +..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD---YKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh---hHHH--
Confidence 4555566666666666666666666653 343 34455555566666666666666655543110 0000 0000
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 044169 567 LLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
..+|..+..++...|++++|++.++++++..| ++...
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~ 119 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELV 119 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHH
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHH
Confidence 12445555666677777777777777777666 44433
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=8.3e-05 Score=78.76 Aligned_cols=162 Identities=10% Similarity=-0.118 Sum_probs=107.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCc-HHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNS----TFLAVLSACSHSGLVQDGQKVFESMVKE---YGILPE-EAH 560 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~ 560 (742)
+..|...|...|++++|.+.+.++...- -.++.. ..+.+-..+...|+++++.++++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667778888888888888887765421 112221 2233333445667888888887776432 122222 446
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----ch
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELD---PDD----AA 625 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 625 (742)
+..++..|...|++++|..++++.. .++. ..++..++..|...|++++|...+++++... +++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7778888888888888888876542 1222 4567777788888899999988888887652 222 24
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56677788888888888887776654
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=4.7e-05 Score=67.58 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCchh
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDP------DDAAV 626 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~ 626 (742)
+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|...++++++..+ .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3444444555555555554444321 0111 33455566667777777777777777766421 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+..++.+|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88899999999999999998887654
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.00 E-value=2.8e-05 Score=65.70 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=56.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC
Q 044169 527 AVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHS 604 (742)
Q Consensus 527 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 604 (742)
.+...+.+.|++++|+..|+...+. -+.+...|..+..++.+.|++++|+..+++.. ..| +...|..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444555566666666666665542 22344555566666666666666666666543 233 4666777777777778
Q ss_pred CHHHHHHHHHHHHhcCCCCc
Q 044169 605 DLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~ 624 (742)
++++|...++++++.+|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888777543
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=0.00011 Score=62.38 Aligned_cols=105 Identities=15% Similarity=0.042 Sum_probs=62.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRC 602 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~ 602 (742)
...+...|++++|...|+.+.+...-.+. ...+..+..++.+.|++++|++.+++.. ..|+ ...+..+..++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 33444555566666655555442111110 1345555666666666666666665542 2222 4556677777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
.|++++|...++++++..|+++........+
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8888888888888888888776655544433
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=0.00011 Score=68.18 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-IKP-T----------------APIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
.+..+...+.+.|++++|++.|++.. ..| + ...|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 45556666667777777777666542 111 1 26788888899999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 622 DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 622 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+++.++..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=2.8e-05 Score=69.61 Aligned_cols=78 Identities=19% Similarity=0.005 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA-AVYVTLSNMY 634 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y 634 (742)
...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567888889999999999998888754 334 688899999999999999999999999999999887 5555555444
Q ss_pred H
Q 044169 635 A 635 (742)
Q Consensus 635 ~ 635 (742)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.95 E-value=3.2e-05 Score=63.68 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=44.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHc
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP---TAPIWRPLFAACRCH 603 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~ 603 (742)
+...+...|++++|...+++..+. .+.+...+..+..++...|++++|++.+++.. ..| +...|..+...+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 333444444444444444444331 11223344444444455555555554444432 112 345555555556666
Q ss_pred -CCHHHHHHHHHHHHhcCCCC
Q 044169 604 -SDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 604 -g~~~~a~~~~~~~~~~~p~~ 623 (742)
|++++|.+.++++++..|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCCC
T ss_pred hCCHHHHHHHHHHHhhcccCC
Confidence 66666666666666666543
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=5e-05 Score=78.30 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CcHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL-PEEAHYSCMV 565 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~l~ 565 (742)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++. ... .+...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 345777778888888888888888887752 11100 000111111 111 2345788889
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|++..++..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 445 5788899999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 044169 644 EEQ 646 (742)
Q Consensus 644 ~~~ 646 (742)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=2e-05 Score=80.38 Aligned_cols=148 Identities=12% Similarity=-0.009 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
...|..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666777777888888888888887763 555432 233444444433221 136777888
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCHHHH
Q 044169 567 LLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY-AEAGLQADA 643 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~A 643 (742)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899988888887753 333 6778888888888899999999999999888888888888888774 445667777
Q ss_pred HHHHHHHHhCC
Q 044169 644 EEQRKLMKMKE 654 (742)
Q Consensus 644 ~~~~~~m~~~~ 654 (742)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77777765443
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.00044 Score=75.42 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=134.6
Q ss_pred CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 044169 470 GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR----------ARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHS 535 (742)
Q Consensus 470 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 535 (742)
..-++|.+.++++. +.+..+|+.--.++...|+ ++++++.++++.+. .|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34467788887776 3344577776666666666 89999999999985 454 46787777788888
Q ss_pred C--cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc-------
Q 044169 536 G--LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG-KLEIALIFISNLP-IKP-TAPIWRPLFAACRCH------- 603 (742)
Q Consensus 536 g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~------- 603 (742)
+ +++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++. ..| |..+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999873 3456777888888888889 8999999998875 444 688898888887663
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 044169 604 -------SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 604 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 642 (742)
+.++++.+.++++++.+|+|..+|..+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998655
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=1.6e-05 Score=66.77 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=64.3
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYG--ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
.|++++|+..|++..+. + -+.+...+..+..+|.+.|++++|++.|++.. ..| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46667777777776541 1 12234466777778888888888888877653 233 5777888888888999999999
Q ss_pred HHHHHHHhcCCCCchhHH
Q 044169 611 FISKQILELDPDDAAVYV 628 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~ 628 (742)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999888776543
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00025 Score=75.05 Aligned_cols=158 Identities=8% Similarity=0.009 Sum_probs=117.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPT----------------NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE 558 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 558 (742)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888876421111 0236778899999999999999999887644433333
Q ss_pred H----HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C
Q 044169 559 A----HYSCMVDLLGRAGKLEIALIFISNLP-------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILEL------D 620 (742)
Q Consensus 559 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 620 (742)
. +.+.+...+...|++++|.+++++.. ..+. ..++..+...+...|++++|...++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 34455566778899999998887542 2222 556788888999999999999999998764 2
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 621 PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 621 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456899999999999999999999988764
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=3.6e-05 Score=63.50 Aligned_cols=92 Identities=11% Similarity=-0.068 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD------AAVYV 628 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 628 (742)
+...+..+...+.+.|++++|++.+++.. .+.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567778888888899999988888753 33467888899999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 044169 629 TLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 629 ~l~~~y~~~g~~~~A~~~~~ 648 (742)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777655443
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.81 E-value=0.00011 Score=57.80 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|++.+++.. .+.+...|..+...+...|++++|...++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456677777888888888888887653 23357778888888999999999999999999999999999999988887
Q ss_pred hcC
Q 044169 636 EAG 638 (742)
Q Consensus 636 ~~g 638 (742)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.00014 Score=77.45 Aligned_cols=123 Identities=9% Similarity=-0.027 Sum_probs=81.9
Q ss_pred hccCcHHHHHHHHHHhHHhcC--C---CCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYG--I---LPE-EAHYSCMVDLLGRAGKLEIALIFISNLP---------IKPT-APIWRPL 596 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l 596 (742)
...|++++|+.++++..+... + .|+ ..+++.|+.+|...|++++|..++++.. ..|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555555555555443211 1 122 2346666666666666666666655432 2333 4457778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-----cCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 597 FAACRCHSDLKMAEFISKQILE-----LDPDDAAV---YVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.++++...
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888876 46776654 46788889999999999999999987543
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=7.1e-05 Score=65.34 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-C-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-I-------KPT-APIW----RPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|+++++++|+|...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56666666666666666666655432 3 675 5678 899999999999999999999999999988775
Q ss_pred HHHHH
Q 044169 627 YVTLS 631 (742)
Q Consensus 627 ~~~l~ 631 (742)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54443
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.80 E-value=7.4e-05 Score=66.23 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGI-RPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAH 560 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 560 (742)
+..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|.+.+++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555544433200 0111 23444555555556666666555554432111111 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
+..+..++...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5556666666666666666655432 0111 3345566667778888888888888777653
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.79 E-value=0.00011 Score=59.42 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778899999999999999999999999999999999999999999999999999999988765
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=5.2e-05 Score=77.25 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 535 (742)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34577788889999999999999998652222111 1222333444333221 13677788888899
Q ss_pred CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHH-HHHcCCHHHHHHH
Q 044169 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAA-CRCHSDLKMAEFI 612 (742)
Q Consensus 536 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~-~~~~g~~~~a~~~ 612 (742)
|++++|+..++..++. .+.+...|..+..+|...|++++|+..|++.. ..|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988763 23456788889999999999999999998875 4554 4455555554 3445677888899
Q ss_pred HHHHHhcCCCCc
Q 044169 613 SKQILELDPDDA 624 (742)
Q Consensus 613 ~~~~~~~~p~~~ 624 (742)
+.++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999988654
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00025 Score=73.00 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKP-TAPIWRPLFAACR 601 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 601 (742)
..+..+...+.+.|++++|++.|++..+.. ++. ......+++.+ ..| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 346666667777777777777777765411 000 00011111111 122 4677888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987643
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=0.0001 Score=61.33 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=63.0
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 577 ALIFISNL-PIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 577 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
|++.|++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555543 2233 57788888888999999999999999999999999999999999999999999999999887653
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.68 E-value=0.00042 Score=73.81 Aligned_cols=65 Identities=9% Similarity=-0.080 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57788899999999999999999999999999999999999999999999999999999988654
No 198
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.65 E-value=0.00014 Score=77.93 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHH
Q 044169 464 EAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 539 (742)
..|.+.|++++|.+.|++.. +.+...|..+..+|.+.|++++|+..+++..+. .|+ ...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777776654 334556666677777777777777777776663 343 355666666666777777
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHH--HhhcCCHHHHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDL--LGRAGKLEIALIFIS 582 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 582 (742)
+|.+.|++..+...- +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777666553211 22233333333 666666666666665
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=4.6e-05 Score=66.38 Aligned_cols=84 Identities=14% Similarity=-0.047 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 571 AGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSD----------LKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.+.+++|++.+++.. ..| +...|..+..++...++ +++|+..++++++++|++..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344555555555432 222 45555555555554443 569999999999999999999999999999885
Q ss_pred -----------CHHHHHHHHHHHHhCC
Q 044169 639 -----------LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 -----------~~~~A~~~~~~m~~~~ 654 (742)
++++|.+.|++..+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999988754
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.54 E-value=0.0012 Score=56.95 Aligned_cols=111 Identities=9% Similarity=-0.077 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 044169 537 LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFI 612 (742)
Q Consensus 537 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 612 (742)
++++|.+.|++..+ .+ .|+.. |..+|...+.+++|++.|++.....++..+..|...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 44555555555543 22 12221 555555555555566666554333455666666666665 5677777777
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 044169 613 SKQILELDPDDAAVYVTLSNMYAE----AGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 655 (742)
++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766 367777778888877 7788888888877776653
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.52 E-value=0.00059 Score=53.96 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 587 KPTAPIWRPLFAACRCHSD---LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
++|+..+..+..++...++ .++|..+++++++++|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3467778888888655544 799999999999999999999999999999999999999999999987653
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=0.002 Score=70.19 Aligned_cols=150 Identities=10% Similarity=0.015 Sum_probs=123.0
Q ss_pred HcC-CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 499 QNG-RARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGL----------VQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 499 ~~g-~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
+.| ..++|++.++++.+ +.|+.. .|+.--.++...|+ ++++++.++.+.+ .-+.+...|..-.-
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344 45788999999998 477764 46665566666666 9999999999987 33456778888888
Q ss_pred HHhhcC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc----
Q 044169 567 LLGRAG--KLEIALIFISNLP--IKPTAPIWRPLFAACRCHS-DLKMAEFISKQILELDPDDAAVYVTLSNMYAEA---- 637 (742)
Q Consensus 567 ~~~~~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---- 637 (742)
++.+.| ++++|+++++++. ...+..+|+.-.....+.| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888999 7799999999875 4457889999999999999 899999999999999999999999999998885
Q ss_pred ----------CCHHHHHHHHHHHHh
Q 044169 638 ----------GLQADAEEQRKLMKM 652 (742)
Q Consensus 638 ----------g~~~~A~~~~~~m~~ 652 (742)
++++++.+.++....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHh
Confidence 567888888877754
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00057 Score=56.00 Aligned_cols=66 Identities=9% Similarity=-0.059 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...|..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988654
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.29 E-value=0.00072 Score=71.92 Aligned_cols=117 Identities=8% Similarity=-0.061 Sum_probs=87.0
Q ss_pred HHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCc---hhH
Q 044169 566 DLLGRAGKLEIALIFISNLP---------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILEL-----DPDDA---AVY 627 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 627 (742)
..+...|++++|+.++++.. ..|+ ..+++.|...|...|++++|+.+++++++. .|++| .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999998886542 2333 456888999999999999999999999873 56554 468
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 044169 628 VTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700 (742)
Q Consensus 628 ~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 700 (742)
+.|+.+|..+|++++|..++++..+--.. .- -..||...++.+.+.+...+++..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999887642110 00 126888888777776666665543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00041 Score=60.37 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCH-----------SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 641 (742)
++|+..|++.. ..| +..+|..+..+|... |++++|++.|+++++++|++......+- ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHH
Confidence 35555555432 333 355566666666554 5899999999999999997754333221 234
Q ss_pred HHHHHHHHHHhCC
Q 044169 642 DAEEQRKLMKMKE 654 (742)
Q Consensus 642 ~A~~~~~~m~~~~ 654 (742)
+|-++.-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 4555554444443
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.27 E-value=0.0013 Score=54.40 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=52.3
Q ss_pred HHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 541 GQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 541 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
|++.|++..+ ..+.+...+..+..+|.+.|++++|++.+++.. . +.+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555543 222345566667777777777777777776643 2 33466777777778888888888888888887
Q ss_pred cCCC
Q 044169 619 LDPD 622 (742)
Q Consensus 619 ~~p~ 622 (742)
+.|+
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7663
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.24 E-value=0.0044 Score=53.31 Aligned_cols=112 Identities=12% Similarity=-0.090 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHH
Q 044169 501 GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEI 576 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 576 (742)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 47889999999999887 44444 667777778889999999998763 466777888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 044169 577 ALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDP 621 (742)
Q Consensus 577 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 621 (742)
|++.|++.....++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987655688888889888888 8999999999999999853
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.24 E-value=0.0013 Score=68.83 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILEL-----DPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGC 661 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~ 661 (742)
..+++.+...|...|++++|+.+++++++. .|++| ..++.|+.+|...|++++|..++++..+--. ..-
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-- 405 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-- 405 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT--
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc--
Confidence 345666777777777777777777777652 44444 4688899999999999999998888764110 000
Q ss_pred cEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 044169 662 SWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE 698 (742)
Q Consensus 662 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 698 (742)
-..||...+++..+.+...+|+
T Consensus 406 ---------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 406 ---------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ---------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCChHHHHHHHHHHHHHHHHh
Confidence 1268888888888877777765
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.22 E-value=0.0013 Score=51.42 Aligned_cols=66 Identities=27% Similarity=0.288 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...|..+...+...|++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356778888889999999999999999999999999999999999999999999999999887643
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.022 Score=57.00 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=29.7
Q ss_pred CCCchHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 044169 484 AADVVSWNSMIKAYS--QNG---RARKAIILFEKMVVEGIRPTN-STFLAVLSAC 532 (742)
Q Consensus 484 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 532 (742)
..+...|...+.+.. ..+ +..+|+.+|++.++ ..|+. ..+..+..++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 446677777776543 333 34789999999988 47875 4454444444
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0013 Score=68.68 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILE-----LDPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+++.|..+|...|++++|+.+++++++ +.|++| .+++.|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4566677777777777777777777765 244444 4688899999999999999998888764
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.84 E-value=0.0055 Score=48.81 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=57.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-IKP-TAP-IWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
.+..+.+.|++++|++.+++.. ..| +.. .|..+..++...|++++|...++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556777888888888887753 334 566 78888888899999999999999999999988876632 445
Q ss_pred HHHHHHHHH
Q 044169 641 ADAEEQRKL 649 (742)
Q Consensus 641 ~~A~~~~~~ 649 (742)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.82 E-value=0.0036 Score=49.90 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=54.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAA-VYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445678899999999999999999999999 99999999999999999999999988654
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.81 E-value=0.0047 Score=49.53 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
+...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555666666666666666666666653 333 34555566666666666666666665543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.72 E-value=0.0076 Score=62.90 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP---------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILE-----LDPDDA 624 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 624 (742)
+++.|..+|...|++++|+.++++.. ..|+ ..+++.|...|...|++++|+.+++++++ ++|++|
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 45566666666666666666555432 2333 34577777788888888888888888776 467777
Q ss_pred hhHH
Q 044169 625 AVYV 628 (742)
Q Consensus 625 ~~~~ 628 (742)
.+-.
T Consensus 422 ~~~~ 425 (433)
T 3qww_A 422 YISE 425 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.58 E-value=0.014 Score=60.97 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP---------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILE-----LDPDDA 624 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 624 (742)
+++.|+.+|...|++++|+.++++.. ..|+ ..+++.|...|...|++++|+.+++++++ ++|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 45555555555555555555554331 2333 34567777778888888888888887776 477777
Q ss_pred hhHHHH
Q 044169 625 AVYVTL 630 (742)
Q Consensus 625 ~~~~~l 630 (742)
.+-..+
T Consensus 411 ~~~~~~ 416 (429)
T 3qwp_A 411 LIEDLI 416 (429)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.47 E-value=0.19 Score=41.32 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=100.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI 576 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (742)
+.-.|..++..++..+... ..+..-++.++--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 3456788888888888776 334455666665555556666667777766432221 24555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 577 ALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 577 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
....+-.+. .+.......+.....+|..++-.+++..++..+|-++.....++.+|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555543 244556667778888999999999999976666558999999999999999999999999999999974
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.44 E-value=0.019 Score=49.29 Aligned_cols=63 Identities=6% Similarity=-0.092 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 589 TAPIWRPLFAACRCHS---DLKMAEFISKQILELD-P-DDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+..+.-.+..++.+.+ +.++++.+++.+++.+ | ++...+..|+-+|.+.|++++|.++++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333444444433 3334444444444444 3 233444444444444444444444444444
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.34 E-value=0.046 Score=54.70 Aligned_cols=134 Identities=12% Similarity=0.077 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHh---hcC-----C---HHHHHHH
Q 044169 518 IRPTNSTFLAVLSACS--H---SGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLG---RAG-----K---LEIALIF 580 (742)
Q Consensus 518 ~~p~~~t~~~ll~a~~--~---~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~---~~g-----~---~~~A~~~ 580 (742)
.+.+...|...+++.. . .....+|+.+|++.++ ..|+. ..|..+.-+|. ..+ . +..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3455566777776543 2 2346889999999975 34653 34443333332 111 1 1223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 581 ISNLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 581 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...+. .+.++.++..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++......
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22333 345688888887778888999999999999999998 678889999999999999999999988876543
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.22 E-value=0.14 Score=58.67 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=60.2
Q ss_pred HHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQI 443 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i 443 (742)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 662 ~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 34567777777776654 3556788888888888888888888877643 22334444445666655555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044169 444 HSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQ 481 (742)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 481 (742)
-+.....| -++....+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433 123334445666777777665543
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.12 E-value=0.0023 Score=65.13 Aligned_cols=210 Identities=11% Similarity=0.087 Sum_probs=145.3
Q ss_pred ccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHH
Q 044169 60 GLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRY 139 (742)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 139 (742)
...|+ .+..+. ...+...+|++.|-+. -|+..|..++.++.+.|.++.-...
T Consensus 54 p~VWs-~LgkAq--------L~~~~v~eAIdsyIkA-------------------~Dps~y~eVi~~A~~~~~~edLv~y 105 (624)
T 3lvg_A 54 PAVWS-QLAKAQ--------LQKGMVKEAIDSYIKA-------------------DDPSSYMEVVQAANTSGNWEELVKY 105 (624)
T ss_dssp CCCSS-SHHHHT--------TTSSSCTTTTTSSCCC-------------------SCCCSSSHHHHHTTTSSCCTTHHHH
T ss_pred ccHHH-HHHHHH--------HccCchHHHHHHHHhC-------------------CChHHHHHHHHHHHhCCCHHHHHHH
Confidence 34799 999999 8889999998876553 3667789999999999999988888
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCC------
Q 044169 140 HALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGID------ 213 (742)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------ 213 (742)
+....+. ..++.+-+.|+-+|++.|++.+-++.+ ..+|+.--..+.+-|...|.++.|.-+|..+....
T Consensus 106 L~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstL 180 (624)
T 3lvg_A 106 LQMARKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 180 (624)
T ss_dssp HHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSS
T ss_pred HHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHH
Confidence 8777665 466677889999999999988765543 34677667777777888888887777776653211
Q ss_pred --------------CCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcc
Q 044169 214 --------------VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGL 279 (742)
Q Consensus 214 --------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (742)
-.-+..||..+-.+|...+.+..|...--.++-. +| -...|+..|-+.|.+++-+.+++.-
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1235677888888888777776664443333211 11 1234566677778877777777654
Q ss_pred C---CCCcchHHHHHHHHHhCCCcchHHHHHH
Q 044169 280 V---QRNVISWTAIINGFKQHGDYEKPLRLVC 308 (742)
Q Consensus 280 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 308 (742)
. +.....|+-|.-.|++- ++++..+.++
T Consensus 256 lglErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 256 LGLERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred hCCCchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 3 24556677777777665 4555444443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.92 E-value=0.025 Score=54.15 Aligned_cols=87 Identities=10% Similarity=0.136 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CCHHH
Q 044169 574 LEIALIFISNLP-IKPT---APIWRPLFAACRC-----HSDLKMAEFISKQILELDPDD-AAVYVTLSNMYAEA-GLQAD 642 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 642 (742)
..+|...+++.. ..|+ ...|..+...|.+ .|+.++|++.|+++++++|+. ..++..+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 456666666543 5665 5578888888888 599999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 044169 643 AEEQRKLMKMKEISKEPG 660 (742)
Q Consensus 643 A~~~~~~m~~~~~~~~~~ 660 (742)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887765454
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.87 E-value=0.069 Score=61.28 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=77.4
Q ss_pred hcCCHHHHHH-HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044169 468 KCGSWEDAER-VFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 468 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
..+++++|.+ ++..++ +......++..+.+.|..++|+++.+.-. .- .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCCHHHHHHHHH
Confidence 4567777766 443332 01122555666666777777766543111 11 122344677777777643
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.+ .+...|..+.+.+.+.|+++.|.+.|.++. | |..+...+...|+.+...++.+.+...+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~---d---~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----- 738 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH---D---LESLFLLHSSFNNKEGLVTLAKDAETTGK----- 738 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---C---HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc---C---hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----
Confidence 33 355677777777777777777777777665 1 22333334445555544444443333221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
+.....+|.+.|++++|.+++..
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 12222334445555555555443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.053 Score=43.63 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 562 SCMVDLLGRAGKLEIALIFISNLP---------IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
..|...+.+.|+++.|...|+... ..+...++..|..++.+.|+++.|...++++++++|+++.+...+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344455555555555555544321 1234667888889999999999999999999999999887765554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.51 E-value=0.096 Score=41.00 Aligned_cols=69 Identities=7% Similarity=-0.010 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 555 LPEEAHYSCMVDLLGRAGK---LEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+.+...+..+..++...++ .++|..++++.. ..| ++..+..+...+.+.|++++|+..++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566777777777765544 688888888764 344 57777778888999999999999999999999873
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.45 E-value=0.02 Score=58.54 Aligned_cols=238 Identities=8% Similarity=0.072 Sum_probs=151.5
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHcc
Q 044169 151 DQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGS 230 (742)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (742)
.+.+|+.|..++.+.|++.+|.+-| +...|...|..+|.+..+.|.+++-+..+.-.++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4456777777777777777776655 3345666777777777777877777777766655422 33333467777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC------------------------CCCcch
Q 044169 231 LSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV------------------------QRNVIS 286 (742)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 286 (742)
.+++.+-++++ -.|+..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77665543333 13454445566666677777777777766552 147889
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Q 044169 287 WTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMA-LGDFVGTAIVDMYS 365 (742)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~ 365 (742)
|-.+-.+|...+.+.-|.-.--.+.-. || -+..++.-|-..|.+++-..+++.-. |++ ....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 999999999999988876554444321 22 12234556777888888777776654 332 35677888888888
Q ss_pred hCCCHHHHHHHHHh----cCCC------CChhhHHHHHHHHHhCCCcHHHHH
Q 044169 366 GLGEIWEAKKQLKE----MGKS------ASSVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 366 ~~g~~~~A~~~~~~----~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 407 (742)
+- +.++..+.++. +.++ .....|.-++-.|++-.+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 86 33333333332 2311 134568888888888888887653
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.17 E-value=1.1 Score=39.36 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=64.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044169 464 EAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
+....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777765 3566788888888888888888888776543 2333334444566555444
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
+-+.... .| -++.-...+.-.|+++++++++.+..
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4333322 11 13334455666778888877777654
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.07 E-value=0.1 Score=44.69 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=55.0
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCCHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG---KLEIALIFISNLP-IK-P--TAPIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
..+.+-|.+..+. + .++..+...+.-++.+.+ +.++++.++++.. .. | +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444331 2 245555555556666655 4446666665543 12 3 24456667777899999999999
Q ss_pred HHHHHHhcCCCCchhHH
Q 044169 612 ISKQILELDPDDAAVYV 628 (742)
Q Consensus 612 ~~~~~~~~~p~~~~~~~ 628 (742)
.++.+++.+|++..+..
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999998765444
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.58 E-value=6.3 Score=42.75 Aligned_cols=114 Identities=10% Similarity=-0.003 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 044169 501 GRARKAIILFEKMVVEGIRPTNST----FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI 576 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (742)
.+.+.|...+....+.+ ..+... ...+.......+...++...+..... . .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--R-SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--T-CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--c-CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888776543 223322 22333334444534455555555432 1 2333333334444457788888
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 577 ALIFISNLPIKP-T-APIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 577 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
|...|+.|...+ + ....-=+..+....|+.++|...++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888886332 2 22222233456677888888888888765
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.37 E-value=0.28 Score=40.38 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=47.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHHcCC
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI---ALIFISNLPIK--P--TAPIWRPLFAACRCHSD 605 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~ 605 (742)
.....+..+.+-+...... +. ++..+--.+.-++.+.....+ ++.++++.... | .....-.|.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 3334445555555554332 22 555555556666666665544 66666654311 2 12223334445666666
Q ss_pred HHHHHHHHHHHHhcCCCCch
Q 044169 606 LKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~ 625 (742)
+++|.+.++.+++.+|+|..
T Consensus 90 Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHH
Confidence 66666666666666665544
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.06 E-value=1.7 Score=38.26 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=20.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444332 23344444444444444444444444443
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.27 Score=54.50 Aligned_cols=55 Identities=16% Similarity=0.004 Sum_probs=50.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
...|...|+++.|.++.++++..-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3447788999999999999999999999999999999999999999999999884
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.74 E-value=0.29 Score=39.11 Aligned_cols=65 Identities=22% Similarity=-0.003 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELD-------PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+....-.+...+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445677888999999999999999998852 235678999999999999999999999988763
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.50 E-value=4 Score=34.22 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 588 PTAPIWRPLFAACRCHSD---LKMAEFISKQILELDPD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|+..+--.+..++.+..+ ..+++.+++.+....|. .......|+-++.+.|+|++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333333334444443332 33455555555555552 333445555556666666666666555554
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.27 E-value=2.8 Score=34.47 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=56.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--cHHHHHHHHHHHhhcCC
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQD---GQKVFESMVKEYGILP--EEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~ 573 (742)
.......+.+-|.+....|. |+..+-..+..++.+...... ++.+++.+.+. -.| .....-.|.-++.+.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445556666666655553 666666666777777766554 77888777552 223 33445566778888888
Q ss_pred HHHHHHHHHhCC-CCCC
Q 044169 574 LEIALIFISNLP-IKPT 589 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p~ 589 (742)
+++|.+.++.+. ..|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 888888887754 4554
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.32 E-value=0.25 Score=47.30 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCC--cHHHHHHHHHHHhhc-C
Q 044169 504 RKAIILFEKMVVEGIRPT---NSTFLAVLSACSHS-----GLVQDGQKVFESMVKEYGILP--EEAHYSCMVDLLGRA-G 572 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~-g 572 (742)
..|...+++.++ +.|+ ...|..+...|.+. |+.++|.+.|++.++- .| +..++..+.+.|++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 345555555554 3454 23455555545442 5555555555555431 22 133333444444442 4
Q ss_pred CHHHHHHHHHh
Q 044169 573 KLEIALIFISN 583 (742)
Q Consensus 573 ~~~~A~~~~~~ 583 (742)
+.++|.+.+++
T Consensus 255 d~~~a~~~L~k 265 (301)
T 3u64_A 255 NRAGFDEALDR 265 (301)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.23 E-value=5.6 Score=32.90 Aligned_cols=84 Identities=7% Similarity=-0.062 Sum_probs=59.6
Q ss_pred hCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Q 044169 366 GLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHS 445 (742)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 445 (742)
.||++......+-.++ .+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.
T Consensus 73 ~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4566666666665553 4455566777778888888888888877544 346777778888888888888888888888
Q ss_pred HHHHhCC
Q 044169 446 RIVKSKF 452 (742)
Q Consensus 446 ~~~~~~~ 452 (742)
++-+.|+
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 8777764
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.19 E-value=0.9 Score=38.40 Aligned_cols=58 Identities=9% Similarity=-0.035 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 572 GKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 572 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
++.++|.++|+.+. .+.=...|......-.++|++..|.+++.+++.+.|.+...+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 56666666666552 11126677777777788999999999999999998866554443
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.07 E-value=30 Score=39.29 Aligned_cols=164 Identities=10% Similarity=0.071 Sum_probs=77.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHhcCCHHHHHHHHHhcC-CCCch-HHH---HHHHHHHHcCC
Q 044169 430 ACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA--YNKCGSWEDAERVFSQLT-AADVV-SWN---SMIKAYSQNGR 502 (742)
Q Consensus 430 ~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~ 502 (742)
.+...|+.+....++..+.+.. +..+...++.+ +.-.|+.+.+..+.+.+. ..+.. -|. ++.-+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666666666655421 22222223333 334566666666655554 22322 222 23345556667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH-HHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL-EIALIFI 581 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 581 (742)
.....++++.+.+. ...+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .+|++.+
T Consensus 576 ~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 66655677766653 111222222222234344554445555554433 2234444444444444444433 5667777
Q ss_pred HhCCCCCCHHHHHHHHHH
Q 044169 582 SNLPIKPTAPIWRPLFAA 599 (742)
Q Consensus 582 ~~~~~~p~~~~~~~l~~~ 599 (742)
..+...+|..+-..-+.+
T Consensus 653 ~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHHHTCSSHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHH
Confidence 766655565544433333
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.82 E-value=1.7 Score=37.54 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLPI 586 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (742)
+.+.--.+..+|.+.|+.++|+.+++.++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 444444577788888888888888888763
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.27 E-value=2.9 Score=34.57 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 588 PTAPIWRPLFAACRCHSD---LKMAEFISKQILELDPD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|...+--.+..++.+..+ ..+++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444332 34566666666666553 345566666677777777777777666654
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.51 E-value=2.7 Score=35.55 Aligned_cols=54 Identities=7% Similarity=-0.097 Sum_probs=45.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
..+|.++|.++|+.++.+...-+..+...+.--.+.|+...|.+++......+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 347889999999999888655677888888888999999999999999887654
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.48 E-value=22 Score=34.55 Aligned_cols=165 Identities=8% Similarity=0.039 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHH----HHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRL----VCLMREDGIDPNEYTFTVALASCASL 332 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~ 332 (742)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.++++|..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3445557778888888877542 23445666776655553 55556678888888888888777664
Q ss_pred CChh-HHHHHHHHHHH----hCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhC---CCc
Q 044169 333 RNSH-MGYMFHAQVIK----RGM--ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRN---QKT 402 (742)
Q Consensus 333 ~~~~-~a~~i~~~~~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 402 (742)
..-+ .-..+...+++ .|- ..++.....+...|.+.|++.+|+..|-.-. ..|...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCCc
Confidence 3222 22344444443 322 2467778888888889999999888776221 22445555555444433 333
Q ss_pred HHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 403 EEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 403 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.++-- ..-..++ -|...++...|..+++...
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33211 1111222 2345677777777776544
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.41 E-value=24 Score=36.52 Aligned_cols=257 Identities=11% Similarity=0.126 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHchh-----CCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhH---HHHHHHHHHhCCC
Q 044169 197 ALFDQAFSFFLKLDG-----IDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAV---SNALLTMYIKCGM 268 (742)
Q Consensus 197 g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 268 (742)
|++.+|++.+..+.+ .+..........++..|...++++...+.+..+.+........+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888888766653 22344455677788888888988888777666554322221111 1222232222232
Q ss_pred hH--HHHHHHhccCC---CCc-------chHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 044169 269 ME--DAESVFEGLVQ---RNV-------ISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSH 336 (742)
Q Consensus 269 ~~--~A~~~~~~~~~---~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 336 (742)
.+ .-..+.+.... .-. .....|...|-..|++.+|.+++..+...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------
Confidence 22 22223332211 111 11244566667777777777777776532111111100
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-------CCCCC--hhhHHHHHHHHHhCCCcHHHHH
Q 044169 337 MGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-------GKSAS--SVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 337 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~li~~~~~~g~~~~A~~ 407 (742)
-..++..-+..|...+++..|..++.+. ...|+ ..-+..++..+...+++.+|..
T Consensus 176 ----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 176 ----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0112223344555555555555555443 10111 1234455556666667776666
Q ss_pred HHHHHhHcC-CCCChHHHHH-----HHHHh-cCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHH
Q 044169 408 AFSQMVRND-AACDEFTYSS-----ILKAC-SLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC--GSWEDAERV 478 (742)
Q Consensus 408 ~~~~m~~~g-~~p~~~t~~~-----ll~~~-~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~ 478 (742)
.|.+....- ...|...+.. ++... +..+. .-..+.....+...-++...+..++.+|... .+++.+.+.
T Consensus 240 ~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~--~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 240 YLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN--LQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS--TTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 666554311 1112211111 11111 11111 1112222222222235667778888888764 457777777
Q ss_pred HHhcCCC
Q 044169 479 FSQLTAA 485 (742)
Q Consensus 479 ~~~~~~~ 485 (742)
|.....+
T Consensus 318 ~~~~L~~ 324 (445)
T 4b4t_P 318 YEPVLNE 324 (445)
T ss_dssp TCSSTTT
T ss_pred HHHHhcc
Confidence 7765533
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.33 E-value=4.3 Score=31.28 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=65.6
Q ss_pred ccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHc
Q 044169 130 EECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKL 209 (742)
Q Consensus 130 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 209 (742)
....++|..|-+.+...|. ...+--.-+..+...|++++|..+.+....||..+|-+|-.. +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3467888888888877763 444555556677889999999999999999999999887664 667778887777788
Q ss_pred hhCCCCCChhhH
Q 044169 210 DGIDVQPNHYTY 221 (742)
Q Consensus 210 ~~~~~~p~~~t~ 221 (742)
...| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7766 4444433
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.57 E-value=26 Score=34.37 Aligned_cols=135 Identities=10% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHH----HHchhCCCCCChhhHHHHHHHHc
Q 044169 154 VTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFF----LKLDGIDVQPNHYTYSTMLAICG 229 (742)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 229 (742)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566668889999999987643 134456667766655544 55566788899888888888877
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 044169 230 SLSAID-EGKQLHAQTM----KLQ--YLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGD 299 (742)
Q Consensus 230 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 299 (742)
....-+ .-..+.+.++ +.| ...|+.....+...|.+.+++.+|+.-|=--.+++...+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 655321 1233333333 334 345778888899999999999999888742222223566666655555444
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.52 E-value=4.1 Score=31.39 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHch
Q 044169 131 ECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLD 210 (742)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (742)
...++|..|-+.+...|. ...+--.-+..+...|++++|..+.+....||..+|-+|-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 467888888888877763 444555556677889999999999999999999999887664 7788888888887887
Q ss_pred hCCCCCChhhH
Q 044169 211 GIDVQPNHYTY 221 (742)
Q Consensus 211 ~~~~~p~~~t~ 221 (742)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 766 4444443
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.62 E-value=29 Score=34.03 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=98.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHH----HHHhHcCCCCChHHHHHHHHHhc
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAF----SQMVRNDAACDEFTYSSILKACS 432 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 432 (742)
+.++..-|.+.+++++|.+++..- ...+.+.|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566688889999998876553 23455666666555444 45556788888888888888777
Q ss_pred CCCCHH-HHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Q 044169 433 LLPSLA-TCEQIHSRI----VKSK--FESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARK 505 (742)
Q Consensus 433 ~~g~~~-~a~~i~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (742)
....-+ .=..+.+.+ .+.| -.-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 665321 112222222 3333 23456777888999999999999999884322223345544444443333211
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 506 AIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
.+|...-..++. |...++...|..+++...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222233333 4445788888887766654
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.45 E-value=33 Score=38.01 Aligned_cols=54 Identities=13% Similarity=-0.004 Sum_probs=45.2
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC
Q 044169 226 AICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV 280 (742)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (742)
..|...|+++.|+.+-++.+..- +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566789999999988888774 5567789999999999999999999998886
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.42 E-value=16 Score=43.32 Aligned_cols=163 Identities=9% Similarity=0.085 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLA 438 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 438 (742)
.++..+.+.+..+-+.++..-. +.+...--.+..+|...|++++|.+.|.+... |+..+.... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~--~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc--cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 4555566666666666655544 33444444566778888888888888876422 222211100 0000
Q ss_pred HHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCc----hHHHHHHHHHHHcCCHHHHHH
Q 044169 439 TCEQIHSRIVKS-K-FESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADV----VSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 439 ~a~~i~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~ 508 (742)
. +..+... . ...-..-|..++..+.+.|.++.+.++-.... ..+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0111111 0 11123456677777878888777766554322 2221 258888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 044169 509 LFEKMVVEGIRPTNSTFLAVLSACSHSGLVQD 540 (742)
Q Consensus 509 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 540 (742)
.+-.+.....+ ...+..++..++..|..++
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88888765333 3456666666666665544
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.25 E-value=24 Score=35.66 Aligned_cols=159 Identities=13% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHhccCc-----HHHHHHHHHHhHHhcCCCCcHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVE-GIRPTNST---FLAVLSACSHSGL-----VQDGQKVFESMVKEYGILPEEA 559 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t---~~~ll~a~~~~g~-----~~~a~~~~~~m~~~~~~~p~~~ 559 (742)
+...|...|.+.|+.++..+++...+.. +.-|-..| ...+++.+....+ ++-..+.++....+...-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC---Cc
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP---IKPT-----APIWRPLFAACRCHSDLKMAEFISKQILELD----PD---DA 624 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~---~~ 624 (742)
.-..++..|...|++.+|.+++.++. .+.| ..++..-+..|...+|..++...+..+.... |+ -.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Q ss_pred hhHHHHHHHHH-hcCCHHHHHHHH
Q 044169 625 AVYVTLSNMYA-EAGLQADAEEQR 647 (742)
Q Consensus 625 ~~~~~l~~~y~-~~g~~~~A~~~~ 647 (742)
.....-|.++. ..++|.+|...|
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHH
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.02 E-value=3.3 Score=42.24 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCC
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK-----MKEISKEP 659 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~ 659 (742)
...++.++...|+++++...+..++..+|-+...+..|+.+|.+.|+..+|.+.|+... +.|+.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34556677788899999999999999999888899999999999999999999888765 34665543
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.79 E-value=15 Score=28.41 Aligned_cols=88 Identities=9% Similarity=0.019 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|.. .+.|-.+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777666543 22222223445678899999999999999999999987754 4778888888888788
Q ss_pred HHcCCCCCHHHHH
Q 044169 514 VVEGIRPTNSTFL 526 (742)
Q Consensus 514 ~~~g~~p~~~t~~ 526 (742)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7765 55555554
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.58 E-value=37 Score=32.94 Aligned_cols=167 Identities=8% Similarity=0.025 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHH----HHHHhHcCCCCChHHHHHHHHHhc
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEA----FSQMVRNDAACDEFTYSSILKACS 432 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 432 (742)
+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ ++...+.+++++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666688889999998886653 2345566776665554 444556788888888888887766
Q ss_pred CCCC--H---HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc---CC
Q 044169 433 LLPS--L---ATCEQIHSRIVKSKF--ESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQN---GR 502 (742)
Q Consensus 433 ~~g~--~---~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 502 (742)
.... . +-..+......+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 5331 1 112222233333332 246778888999999999999999887633222344444444433332 33
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
..++-- ..-..++ -|.-.|+...|..+++...+
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 322211 1112222 23456788888888887754
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.42 E-value=15 Score=28.36 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|... +.|-.+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456677777777666543 222222224456788999999999999999999999877553 677788888777777
Q ss_pred HHcCCCCCHHHHH
Q 044169 514 VVEGIRPTNSTFL 526 (742)
Q Consensus 514 ~~~g~~p~~~t~~ 526 (742)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 55544444
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.10 E-value=7.2 Score=33.64 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
..-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 34445666666666666666665544
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.21 E-value=86 Score=35.61 Aligned_cols=156 Identities=11% Similarity=0.077 Sum_probs=72.9
Q ss_pred HHhCCCHHHHHHHHHhcCCCCChhh--HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChH--HHHHHHHHhcCCCCHHH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSASSVS--WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF--TYSSILKACSLLPSLAT 439 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~ 439 (742)
|.-.|+-+....++..+....+... .-.+.-++...|+.+.+-.+++.+.... .|... ....+.-+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3445555555555554310112112 2223334446677777776666665431 11111 11233445677777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCchHHHH--HHHHHHHcCCH-HHHHHHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-AADVVSWNS--MIKAYSQNGRA-RKAIILFEKMVV 515 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~--li~~~~~~g~~-~~A~~~~~~m~~ 515 (742)
..+++..+.... ..++.-...+.-+....|+.+.+.++++.+. ..|...-.. +.-+....|.. .+++.++..+..
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666777666532 2222222222223333555555666665443 233333222 23333334433 566777777764
Q ss_pred cCCCCCHHH
Q 044169 516 EGIRPTNST 524 (742)
Q Consensus 516 ~g~~p~~~t 524 (742)
.+|..+
T Consensus 658 ---D~d~~V 663 (963)
T 4ady_A 658 ---DPVDFV 663 (963)
T ss_dssp ---CSSHHH
T ss_pred ---CCCHHH
Confidence 455543
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.30 E-value=20 Score=30.06 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHHHhhcCCHH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 044169 555 LPEEAHYSCMVDLLGRAGKLE---IALIFISNLP-IKP--TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
.|+..+--.+.-++.+..+.+ +++.+++++. ..| .....-.|.-++.+.|++++|.+..+.+++.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 344444444455555555432 3444444432 123 233344566678999999999999999999999876543
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.17 E-value=13 Score=37.74 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCcHHH
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVK----EYGILPEEAH 560 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 560 (742)
.++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3566667778888888777777664 244556788888888888888888887777543 4578887765
No 260
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=76.69 E-value=90 Score=33.92 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=43.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK--- 468 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~--- 468 (742)
....+.-.|+++.|++.+-+. ...+.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455666788999999887754 35566676666655544332 11111110 00 11 2235567777764
Q ss_pred cCCHHHHHHHHHhcC
Q 044169 469 CGSWEDAERVFSQLT 483 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~ 483 (742)
..+..+|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 477888888776664
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.03 E-value=18 Score=29.80 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
...+--|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3344556667788888888888888888888876543
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.38 E-value=12 Score=29.17 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
.-+..+-++.+....+.|++......+.||.+.+++..|.++|+.+..+.| +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 335666666777777889999999999999999999999999988865433 33445666553
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.37 E-value=25 Score=41.67 Aligned_cols=64 Identities=14% Similarity=-0.052 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCch----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELD-PDDAA----VYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
-|..++..+.+++.++.+.++...+++.. +++.. .|..+...+...|+|++|...+-.+.+...
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 35556666777777777777777777654 33321 456667777777888888777766655443
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.91 E-value=59 Score=28.76 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=35.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHc
Q 044169 150 GDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICG 229 (742)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 229 (742)
+|..+....+..+++.|..+....+.+.+..+|...-...+.++.+.|+.+ +...+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444444445555555555444444444444444444344444455444432 2233333322 234444444444444
Q ss_pred cCCC
Q 044169 230 SLSA 233 (742)
Q Consensus 230 ~~~~ 233 (742)
..++
T Consensus 102 ~~~~ 105 (201)
T 3ltj_A 102 QIGD 105 (201)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4444
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.25 E-value=1.3e+02 Score=32.48 Aligned_cols=226 Identities=10% Similarity=-0.041 Sum_probs=121.3
Q ss_pred CCcHHHHHHHHHHhHcCCCCChH----HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044169 400 QKTEEAIEAFSQMVRNDAACDEF----TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475 (742)
Q Consensus 400 g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 475 (742)
.+.+.|...|....... ..+.. ....+.......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998876543 22322 22333434455553445555555544432 3333344455555678999999
Q ss_pred HHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 044169 476 ERVFSQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552 (742)
Q Consensus 476 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 552 (742)
...|..|.... ....-=+..++...|+.++|..+|+++... . +|..++.+ .+.|..-. . ...
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~-~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------L-KID 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------C-CCC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------C-CCC
Confidence 99999998432 111222455777889999999999998742 2 33333322 11221000 0 000
Q ss_pred CCCC---cH-H--HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC
Q 044169 553 GILP---EE-A--HYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDP---DD 623 (742)
Q Consensus 553 ~~~p---~~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~ 623 (742)
...+ .. . ....-+..+...|...+|...+.......+......+.......|..+.++....+....+. .-
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 0001 00 0 11223456778899999887776654334444444555555677888877766554322210 01
Q ss_pred chhHHHHHHHHHhcCCHHHH
Q 044169 624 AAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A 643 (742)
|..|..++.-+++.-.++.+
T Consensus 450 P~~y~~~i~~~a~~~gv~~~ 469 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQS 469 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHH
T ss_pred CcchHHHHHHHHHHcCCCHH
Confidence 23455555555555444444
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.90 E-value=49 Score=31.15 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=63.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHH----HHHHHHHHHhhc
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEA----HYSCMVDLLGRA 571 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l~~~~~~~ 571 (742)
...+.|+.++|+.....-++. -+-|...-..++..++-.|+|+.|.+-++...+ ..|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 345567777777777766664 133344455566677777777777777766643 234433 23333322
Q ss_pred CCHHHHH-HHHHh--CC--CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 572 GKLEIAL-IFISN--LP--IKPTAPIWRPLFAA--CRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 572 g~~~~A~-~~~~~--~~--~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
+... ++|.. .+ ......-...++.+ ....|+.++|..+-+.+.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 22221 11 11122233344444 34567888888888888877765443
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.80 E-value=1.1e+02 Score=31.47 Aligned_cols=95 Identities=11% Similarity=0.161 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCC--CCc--HH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVE--GIRPTN---STFLAVLSACSHSGLVQDGQKVFESMVKE-YGI--LPE--EA 559 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~--~p~--~~ 559 (742)
...|...|...|++.+|..++.++... |..+.. ..+...++.|...+++.+|..++..+... ... .|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355778888899999999999988643 222221 24666677899999999999988886421 112 222 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
.+.+++..+...+++.+|-..|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5678888889999999988777654
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.09 E-value=13 Score=35.07 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=42.8
Q ss_pred HHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 566 DLLGRAGKLEIALIFISN-LPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
..+.+.|++++|++.... +..+| |...-..|+..++-.|++++|.+-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345678888888877654 33445 56666777778888888888888888888888853
No 269
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=64.41 E-value=48 Score=25.77 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 584 LPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 584 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
+-.-|++.+..+.+.+|++.+|+..|.++++-+...-.+...+|..++
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 336789999999999999999999999999988776543445565554
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.37 E-value=79 Score=28.20 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 603 HSDLKMAEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
.++......+|..+... +-.-+..|...+..+...|++.+|.++++.=.+.+-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44466777888877664 455677888888888888888888888877665554
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.27 E-value=82 Score=28.02 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHH
Q 044169 149 CGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAIC 228 (742)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 228 (742)
.++..+....+..+++.|..+....+.+.+..+|...-...+.++.+.++.+ +...+..+.. .+|...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3555555566666666666544444555555555444444455555555432 2333333322 23444444444444
Q ss_pred ccCCC
Q 044169 229 GSLSA 233 (742)
Q Consensus 229 ~~~~~ 233 (742)
...++
T Consensus 106 ~~~~~ 110 (211)
T 3ltm_A 106 GQIGD 110 (211)
T ss_dssp HHHCC
T ss_pred HHhCc
Confidence 44444
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.98 E-value=24 Score=29.08 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+.+..+. .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 455566666667789999999999999999999999999999886543 344556666654
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.85 E-value=2e+02 Score=31.16 Aligned_cols=27 Identities=7% Similarity=-0.243 Sum_probs=21.3
Q ss_pred cccHHHHHcccccccccccccCCCcchHHHHHHHhhh
Q 044169 61 LSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFID 97 (742)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~ 97 (742)
..| .+|--+ .|+|.+++|.++.++...
T Consensus 154 p~W--a~IyY~--------LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 154 PIW--ALIFYL--------LRAGLIKEALQVLVENKA 180 (661)
T ss_dssp EHH--HHHHHH--------HTTTCHHHHHHHHHHTGG
T ss_pred ccH--HHHHHH--------HhcCCHHHHHHHHHHhhh
Confidence 467 577777 899999999998877643
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.66 E-value=35 Score=35.04 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHH--H
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTA------ADVVSWNSMIKAYSQNGRARKAIILFEKMVV---EGIRPTNST--F 525 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t--~ 525 (742)
.+...+.+.|.++|++++|.+.|.++.. .-+..+-.++..+...+++..+...+.+... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788999999999999999988861 2234677788888889999999999888754 233333322 1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 044169 526 LAVLSACSHSGLVQDGQKVFESMVKEYGI 554 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 554 (742)
..-...+...+++.+|-+.|-+....+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 11122345678899999998888775443
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.87 E-value=94 Score=30.06 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=43.6
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 581 ISNLPIKPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 581 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|.....+|. ..++..-+..+.+++|+..|..+.++++++.|.. ...++|.+++....+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCC
Confidence 444444553 4567778888999999999999999999999842 23456777777766443
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.75 E-value=21 Score=36.81 Aligned_cols=61 Identities=5% Similarity=-0.079 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEY-GILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
+...+..-+.+.|+++.|.+.+.++.... +...-...+-..+.++...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555666666666666666654321 11122334445555555555555555555443
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.36 E-value=1.2e+02 Score=26.85 Aligned_cols=155 Identities=10% Similarity=0.021 Sum_probs=76.5
Q ss_pred hhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHh
Q 044169 168 IKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKL 247 (742)
Q Consensus 168 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 247 (742)
.+....+++.+..+|...-...+..+.+.|..+ +...+..+.. .+|...-...+.++...++.+....+.. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l-- 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-AL-- 90 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HT--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HH--
Confidence 333344444444455544445555556555533 3333333333 2355554555555555554333222222 22
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044169 248 QYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALA 327 (742)
Q Consensus 248 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 327 (742)
-.++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|.. ++...+..+.+ .+|...-...+.
T Consensus 91 -~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 91 -KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp -TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 2455666666666666666655444444545555655555556666665543 34444444443 244444455555
Q ss_pred HHhccCC
Q 044169 328 SCASLRN 334 (742)
Q Consensus 328 ~~~~~~~ 334 (742)
++.+.+.
T Consensus 166 aL~~~~~ 172 (211)
T 3ltm_A 166 ALGEIGG 172 (211)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 5555554
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.33 E-value=1.5e+02 Score=27.52 Aligned_cols=19 Identities=0% Similarity=0.027 Sum_probs=9.2
Q ss_pred HHHHHhcCChhHHHHHHcc
Q 044169 159 VNMYAKCGDIKSMVAVVKQ 177 (742)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~ 177 (742)
+...+..|+.+-...+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444445555555544443
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.68 E-value=1.9e+02 Score=28.59 Aligned_cols=67 Identities=12% Similarity=0.233 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAADV---VSWNSMIKAYSQNGR--ARKAIILFEKMVVEGIRPTNSTF 525 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~ 525 (742)
...++.-|...|+.++|.+.++++..|.. ....++..++-+.++ .+...+++..+...|+-+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46678888889999999999999986642 234444555544333 35577788888877765544433
No 280
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=50.67 E-value=1.1e+02 Score=25.37 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 584 LPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 584 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
+-.-|++.+..+.+.+|++.+|+..|.++++-+...-.+...+|..++
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 346799999999999999999999999999998876543455566554
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.61 E-value=1.4e+02 Score=27.63 Aligned_cols=210 Identities=9% Similarity=0.010 Sum_probs=104.0
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCCc----ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhh--HHHHHHHHcc
Q 044169 157 SLVNMYAKCGDIKSMVAVVKQMPYLDI----ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYT--YSTMLAICGS 230 (742)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~ 230 (742)
..+...++.|+++....+++.-...+. .-+ +.+...+..|+.+-+ +.+.+.|..++... -.+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 445555666777777766665433221 122 334444566665433 33344454443221 1123333444
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHhccCCCCcc-------------hHHHHHHHHH
Q 044169 231 LSAIDEGKQLHAQTMKLQYLSKTAV--SNALLTMYIKCGMMEDAESVFEGLVQRNVI-------------SWTAIINGFK 295 (742)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~ 295 (742)
.|+.+-+ +.+.+.|..++... ..+.+...+..|+.+-...+++.-...+.. .++.+ ...+
T Consensus 82 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L-~~A~ 156 (285)
T 1wdy_A 82 AGSVKLL----KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL-MDAA 156 (285)
T ss_dssp HTCHHHH----HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH-HHHH
T ss_pred cCCHHHH----HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH-HHHH
Confidence 5665443 44445555443221 123344456677877777777654332211 12233 3333
Q ss_pred hCCCcchHHHHHHHHHHC-CCCCCH---HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCC
Q 044169 296 QHGDYEKPLRLVCLMRED-GIDPNE---YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF--VGTAIVDMYSGLGE 369 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 369 (742)
..|+. ++++.+.+. |..++. .-.+. +...+..++......+.+.+.+.|..++.. ...+.+...++.|.
T Consensus 157 ~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 157 EKGHV----EVLKILLDEMGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHTCH----HHHHHHHHTSCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HcCCH----HHHHHHHHhcCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 44554 344444443 544432 12222 333344556555667777778877655432 22334555667788
Q ss_pred HHHHHHHHHhcC
Q 044169 370 IWEAKKQLKEMG 381 (742)
Q Consensus 370 ~~~A~~~~~~~~ 381 (742)
.+-+..+++..+
T Consensus 232 ~~~v~~Ll~~~g 243 (285)
T 1wdy_A 232 LGLVQRLLEQEH 243 (285)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHhccC
Confidence 888888887543
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=46.32 E-value=2.1e+02 Score=28.83 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=8.2
Q ss_pred HHhCCChHHHHHHHhc
Q 044169 263 YIKCGMMEDAESVFEG 278 (742)
Q Consensus 263 ~~~~g~~~~A~~~~~~ 278 (742)
.++.|+.+-...+++.
T Consensus 120 A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 120 AAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3445555555555544
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.28 E-value=88 Score=27.37 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred HHhcCChhHHHHHHccCC-C---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhh--HHHHHHHHccCCChH
Q 044169 162 YAKCGDIKSMVAVVKQMP-Y---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYT--YSTMLAICGSLSAID 235 (742)
Q Consensus 162 ~~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~ 235 (742)
.+..|+.+....++..-. . .|..-++.|..+ ++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345567777766666543 1 233333333333 3445543 3333334444443221 112233334455655
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHhcc-CC---CCcchHHHHHHHHHhCCCcchHHHHHHH
Q 044169 236 EGKQLHAQTMKLQYLSKTA--VSNALLTMYIKCGMMEDAESVFEGL-VQ---RNVISWTAIINGFKQHGDYEKPLRLVCL 309 (742)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 309 (742)
-++.+++. .+..++.. ...+.+...++.|+.+-+..+++.- .. +|..-++.+..+.........-.++++.
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 44444422 12111110 0112233445566776666666554 22 2333344444433322223333566666
Q ss_pred HHHCCCCCCH
Q 044169 310 MREDGIDPNE 319 (742)
Q Consensus 310 m~~~g~~p~~ 319 (742)
+.+.|..++.
T Consensus 164 Ll~~ga~~~~ 173 (201)
T 3hra_A 164 LMENGADQSI 173 (201)
T ss_dssp HHHTTCCTTC
T ss_pred HHHCCCCCCc
Confidence 6666665543
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.93 E-value=1.8e+02 Score=25.99 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc
Q 044169 501 GRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE 557 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 557 (742)
+...++..+|..|...|+--.. ..|......+...|++++|.++|+.-++ .+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 3456777777777777765554 4466666667777777777777777665 344553
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.70 E-value=1.5e+02 Score=24.98 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=33.5
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 609 AEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 609 a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...+|..+... .-..+..|...+..+...|++.+|.++++.=.+.+-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 66677776664 344667788888888888888888888876665543
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.23 E-value=2e+02 Score=25.82 Aligned_cols=82 Identities=7% Similarity=-0.107 Sum_probs=44.2
Q ss_pred ccccchHHHHHHHHHHHHhccCCChh--HHHHHHHHHHhcCChhHHHHHHccCCCC---CcccHHHHHHHHHhCCChHHH
Q 044169 128 SREECLELGRRYHALITKTAVCGDQF--VTASLVNMYAKCGDIKSMVAVVKQMPYL---DIASCNCLLAGYAKNALFDQA 202 (742)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A 202 (742)
+..|+.+..+.+.+.+.+.|..++.. .....+...+..|+.+-+..+++.-..+ |..-++. +...+..|+.+-+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~ 95 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSPTCL 95 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCHHHH
Confidence 34577777777777666666544322 1223445556677777776666643332 2222333 3334456666655
Q ss_pred HHHHHHch
Q 044169 203 FSFFLKLD 210 (742)
Q Consensus 203 ~~~~~~m~ 210 (742)
..+++...
T Consensus 96 ~~Ll~~~~ 103 (241)
T 1k1a_A 96 RALLDSAA 103 (241)
T ss_dssp HHHHHHSC
T ss_pred HHHHHcCC
Confidence 55555543
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.06 E-value=2.7e+02 Score=27.42 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhCCC--cHHHHHHHHHHhHcCCCCC
Q 044169 358 TAIVDMYSGLGEIWEAKKQLKEMGKSAS---SVSWNAQIAGFFRNQK--TEEAIEAFSQMVRNDAACD 420 (742)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 420 (742)
..++.-|...|+.++|.+.+++++ .|. ......+..++-+.++ .+....++..+...|+-+.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~-~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC-CTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc-CCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 467777888888888888888887 443 1223333344433322 2345666666666654443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.27 E-value=1.2e+02 Score=28.60 Aligned_cols=227 Identities=11% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 044169 194 AKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAE 273 (742)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (742)
.+..+..+..+++..- ++......-.+.+...+..|+.+.++.+++. |..++.....+.+...+..|+.+-+.
T Consensus 7 i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred HHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Q ss_pred HHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCChhHHHHHHHHHHH
Q 044169 274 SVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTF---TVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 274 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
.+++.-.. +|..-++.+..+..... .++++.+.+.|..++.... .+.+...+..|+.+ +.+.+.+
T Consensus 80 ~Ll~~ga~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~ 150 (285)
T 3kea_A 80 ILLFSGLDDSQFDDKGNTALYYAVDSGN-----MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLS 150 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHT
T ss_pred HHHHCCCCCCCcCCCCCcHHHHHHHcCC-----HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHh
Q ss_pred hCCCCchH-HHHHHHHHHHhCCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHH
Q 044169 348 RGMALGDF-VGTAIVDMYSGLGEIWEAKKQLKEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFT 423 (742)
Q Consensus 348 ~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 423 (742)
.|..+... ...+.+...+..|..+-+.-+++.- . ..+..-++..+...+..|+ .++.+.+.+.|..++...
T Consensus 151 ~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 151 EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSAN 225 (285)
T ss_dssp TSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTT
T ss_pred CCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 044169 424 YSSILKACSLLPSLATCEQIHSR 446 (742)
Q Consensus 424 ~~~ll~~~~~~g~~~~a~~i~~~ 446 (742)
..-+..|+.+-+..+++.
T Consensus 226 -----~~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 226 -----LENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp -----GGGGTTTCHHHHHHHHHH
T ss_pred -----hhhhhcCCHHHHHHHHHc
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.48 E-value=1.4e+02 Score=24.34 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCC---cchHHHHHHHHHhCCC--cchHHHHHHHHHHCCCCCCHH
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLVQRN---VISWTAIINGFKQHGD--YEKPLRLVCLMREDGIDPNEY 320 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 320 (742)
+.++.=|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 556777777888888888888886652 2234444445544432 345667777777666544433
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=38.30 E-value=2e+02 Score=25.05 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=35.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044169 251 SKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCA 330 (742)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 330 (742)
+|..+....+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 33444444444444444433334444444444544444445555555543 23333333332 244444444455555
Q ss_pred ccCCh
Q 044169 331 SLRNS 335 (742)
Q Consensus 331 ~~~~~ 335 (742)
..++.
T Consensus 102 ~~~~~ 106 (201)
T 3ltj_A 102 QIGDE 106 (201)
T ss_dssp HHCCG
T ss_pred HhCcH
Confidence 44443
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.51 E-value=1.5e+02 Score=24.16 Aligned_cols=64 Identities=13% Similarity=0.263 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAADV---VSWNSMIKAYSQNGR--ARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 522 (742)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45677888888999999999999875532 233444445544432 35677778888777654444
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.83 E-value=2e+02 Score=24.64 Aligned_cols=47 Identities=9% Similarity=-0.028 Sum_probs=33.5
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 609 AEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 609 a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...+|..+... .-.-+..|...+..+...|++.+|.++++.-.+.+-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 55566666654 345677788888888888888888888877666554
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.61 E-value=1.1e+02 Score=27.68 Aligned_cols=17 Identities=0% Similarity=-0.105 Sum_probs=8.6
Q ss_pred HHhCCChHHHHHHHhcc
Q 044169 263 YIKCGMMEDAESVFEGL 279 (742)
Q Consensus 263 ~~~~g~~~~A~~~~~~~ 279 (742)
.+..|+.+-...+++..
T Consensus 86 A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34455555555555443
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.94 E-value=3.3e+02 Score=31.17 Aligned_cols=34 Identities=18% Similarity=-0.093 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCch
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILEL-DPDDAA 625 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~ 625 (742)
-|..++..+-+++.++.+.++.+.+++. .++|+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 4566677777888888888888888864 454544
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.88 E-value=1.6e+02 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.098 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 555 LPEEAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
.++.......+..+.+.|+.++|.++|-+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 44555566677888888888888887743
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.55 E-value=2e+02 Score=25.38 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 574 LEIALIFISNLPIKPTAP--IW-----RPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 574 ~~~A~~~~~~~~~~p~~~--~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
++.|+.+++.+...-+.. .. ...+..|.+.|.+++|.+++++.....+.+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 466777777765332311 11 12334588888888888888888777654443
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.54 E-value=2.4e+02 Score=25.04 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=11.8
Q ss_pred HHHHHHhcCChhHHHHHHccCC
Q 044169 158 LVNMYAKCGDIKSMVAVVKQMP 179 (742)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~~~ 179 (742)
.+...++.|+.+-+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3444555566665555555433
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.22 E-value=1.4e+02 Score=25.32 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCC---cchHHHHHHHHHhCCC--cchHHHHHHHHHHCCCCCCH
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLVQRN---VISWTAIINGFKQHGD--YEKPLRLVCLMREDGIDPNE 319 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 319 (742)
+.++.=|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 556777777788888888888876552 2234444445544322 34466677777666654443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.77 E-value=1.4e+02 Score=25.30 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCH
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTAADV---VSWNSMIKAYSQNGR--ARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 522 (742)
....++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 345677888888999999999998875532 233444445544322 44567777777776654443
No 300
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.18 E-value=2.7e+02 Score=26.91 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=43.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 581 ISNLPIKPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 581 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|.....+|. ..++..-+..+.+++|+..|-.+.++++++.|. +. ..++|.+++....+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PE-------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HH-------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHHHhcCC
Confidence 444444543 456777788899999999999999999999883 22 3355777777766543
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.08 E-value=63 Score=29.97 Aligned_cols=52 Identities=10% Similarity=-0.169 Sum_probs=25.6
Q ss_pred HHhCCChHHHHHHHHHchhCCCCCChhh-------HHHHHHHHc--cCCChHHHHHHHHHH
Q 044169 193 YAKNALFDQAFSFFLKLDGIDVQPNHYT-------YSTMLAICG--SLSAIDEGKQLHAQT 244 (742)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 244 (742)
.++.|+.+....+++.+.+.|..++... .+.+..++. +.|+.+-++.+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455666665556665555444444222 223333321 456666666655543
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.00 E-value=90 Score=28.14 Aligned_cols=202 Identities=13% Similarity=0.038 Sum_probs=96.5
Q ss_pred HHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhh---HHHHHHHHccCCChH
Q 044169 162 YAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYT---YSTMLAICGSLSAID 235 (742)
Q Consensus 162 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~~~~ 235 (742)
.++.|+++....+++.-.. ++..-+ +.+...++.|+.+-+..+++ .|..++... -.+.+...+..|+.+
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHHHHcCCHH
Confidence 4455666666666654322 222222 23445566777654444443 333332111 123344445556665
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHH
Q 044169 236 EGKQLHAQTMKLQYLSKTA--VSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLM 310 (742)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 310 (742)
-.+ .+.+.|..++.. ...+.+...+..|+.+-+..+++.-.. .+....+.+..+..+ +......+++
T Consensus 91 ~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L--- 162 (240)
T 3eu9_A 91 MVV----QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLL--- 162 (240)
T ss_dssp HHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHH---
T ss_pred HHH----HHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHHH---
Confidence 444 444555544322 112344555677888877777765433 233334445444434 3333344333
Q ss_pred HHCCCCCCHHH---HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHHhc
Q 044169 311 REDGIDPNEYT---FTVALASCASLRNSHMGYMFHAQVIKRGMALGDF--VGTAIVDMYSGLGEIWEAKKQLKEM 380 (742)
Q Consensus 311 ~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 380 (742)
.+.|..++... -.+.+...+..|+.+.+ +.+.+.|..++.. ...+-+....+.|+.+-+.-+++..
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVI----SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHH----HHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 33444433221 12344555566776544 4445556554421 1123445556677777766666553
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.44 E-value=2.1e+02 Score=26.33 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=12.7
Q ss_pred HHHHHhCCCcchHHHHHHHHH
Q 044169 291 INGFKQHGDYEKPLRLVCLMR 311 (742)
Q Consensus 291 i~~~~~~g~~~~A~~~~~~m~ 311 (742)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455566666666666666554
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.64 E-value=4.5e+02 Score=25.19 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAADV---VSWNSMIKAYSQNGR--ARKAIILFEKMVVEGIRPTNS 523 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 523 (742)
...++.-|...|+.++|.+.++++..|.. ....++..++-+.++ .+...+++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34677788888999999999999886632 233444444444333 355667777777766554443
No 305
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.06 E-value=2.2e+02 Score=27.90 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=43.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 044169 623 DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGH 702 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 702 (742)
||..+..|...|-..-+|+|. -..|.....| +..+..-+.....+.+..+
T Consensus 374 DpecfA~LLrFYDgIC~WEEG----------S~tPVLHvGW-------------------a~~Lv~si~kF~~~vR~~~- 423 (472)
T 3re2_A 374 DPKFFALVLQFYDGICLWEEG----------SPTPVLHADW-------------------AKKLVQSIGKFAPECRSAF- 423 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT----------CSSCSCCHHH-------------------HHHHHHHHHTSCHHHHHHH-
T ss_pred ChHHHHHHHHHhhcceecccC----------CCCceeehhh-------------------HHHHHHHHhhcCHHHHhhh-
Confidence 788888998888776666543 1122222223 2333333333333333322
Q ss_pred CchhhhhhhhhhhHHHHHHHhhccCCC
Q 044169 703 TDNEKEDRVLYHSERLAVGFGLISLPA 729 (742)
Q Consensus 703 ~p~~~~~~l~~~~~~l~~~~~~~~~~~ 729 (742)
...++.+..||+||----++|.+..
T Consensus 424 --~~n~d~~~~~s~km~~mk~l~~~~~ 448 (472)
T 3re2_A 424 --NANTDTLSLRSAKMREMKNLITTSG 448 (472)
T ss_dssp --HHSGGGGGCCSHHHHHHHTSCC---
T ss_pred --cCCcchHHhhHHHHHHHHHHHHHhh
Confidence 4678889999999998888886543
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.73 E-value=2.4e+02 Score=24.37 Aligned_cols=16 Identities=0% Similarity=0.040 Sum_probs=9.1
Q ss_pred HhCCChHHHHHHHhcc
Q 044169 264 IKCGMMEDAESVFEGL 279 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~ 279 (742)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4456666666666543
No 307
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=24.57 E-value=6.2e+02 Score=26.44 Aligned_cols=68 Identities=7% Similarity=-0.059 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHH----HHH-HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 587 KPTAPIWRPLFAACRCHSDLKMAEFI----SKQ-ILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~a~~~----~~~-~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+|......+-.-+..+|-.++-.++ ++. +.+..|++......|-.-|.+.|++-+|.+++-.+-..+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 44555555555555555543332221 111 112345566667777778888888888888887776654
No 308
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.09 E-value=3.4e+02 Score=23.38 Aligned_cols=49 Identities=8% Similarity=-0.019 Sum_probs=23.6
Q ss_pred HHHHHHHHhH-cCCCCChHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhCCC
Q 044169 405 AIEAFSQMVR-NDAACDEFTY--SSILKACSLLPSLATCEQIHSRIVKSKFE 453 (742)
Q Consensus 405 A~~~~~~m~~-~g~~p~~~t~--~~ll~~~~~~g~~~~a~~i~~~~~~~~~~ 453 (742)
-..+++.+.+ .|..++.... .+-+......|..+.+.-+.+...+.+++
T Consensus 132 ~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 3455566666 6655543211 12233344556665555555555554443
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.99 E-value=3.3e+02 Score=22.97 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc
Q 044169 505 KAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE 557 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 557 (742)
++..+|..|...|+--.. ..|......+...|++++|.++|+.-++ .+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 367778888777765554 4466666677777888888888877665 355553
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.87 E-value=3.2e+02 Score=27.95 Aligned_cols=138 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCC
Q 044169 140 HALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQP 216 (742)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 216 (742)
.....+.|++.-...|..-.+.+...|++++|-++--..+. ++..+.+.+-..=...|+..--+..|..+.+.| +.
T Consensus 349 ~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~L 427 (494)
T 1bpo_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QL 427 (494)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-cc
Q ss_pred ChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcch
Q 044169 217 NHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVIS 286 (742)
Q Consensus 217 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 286 (742)
+..-=.-+.+.....|+.+..+..+.+ ..+..+......+ +..+..-|..+|.+...++-+.
T Consensus 428 n~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~~~~Kvi 489 (494)
T 1bpo_A 428 NKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRANVPNKVI 489 (494)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHCCCCC--
T ss_pred chHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHcCCcHHHH
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.29 E-value=2e+02 Score=27.71 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCCCchhH
Q 044169 389 WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS--LATCEQIHSRIVKSKFESNVHV 458 (742)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~i~~~~~~~~~~~~~~~ 458 (742)
.+.++.-|...|+.++|...++++...... .......+..+.-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 356677777778888888888776421111 12333344444444322 3445566666666555444333
No 312
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.06 E-value=4.3e+02 Score=26.43 Aligned_cols=142 Identities=14% Similarity=0.027 Sum_probs=72.6
Q ss_pred hccccchHHHHHHHHHHHHhccCCChh--HHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHH
Q 044169 127 CSREECLELGRRYHALITKTAVCGDQF--VTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQ 201 (742)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 201 (742)
.+..|+.+ +.+.+++.|..++.. .....+...++.|+.+-+..+++.-.. .+..-++.| ...+..|+.+-
T Consensus 21 Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~ 95 (437)
T 1n11_A 21 ASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARIGHTNM 95 (437)
T ss_dssp HHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHHTCHHH
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHH
Confidence 33456654 455556667655432 123345566778998888888875433 233333333 34456676654
Q ss_pred HHHHHHHchhCCCCCChhh--HHHHHHHHccCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHh
Q 044169 202 AFSFFLKLDGIDVQPNHYT--YSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTA--VSNALLTMYIKCGMMEDAESVFE 277 (742)
Q Consensus 202 A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 277 (742)
+.-++ +.|..|+... -.+.+...+..|+.+....+++ .+...+.. ...+.+...++.|+.+-+..+++
T Consensus 96 v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 96 VKLLL----ENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp HHHHH----HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH----hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 44443 3344443221 1123444455677766655553 33322211 11223445567788877777776
Q ss_pred ccCC
Q 044169 278 GLVQ 281 (742)
Q Consensus 278 ~~~~ 281 (742)
.-..
T Consensus 168 ~g~~ 171 (437)
T 1n11_A 168 RDAH 171 (437)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 5433
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.66 E-value=1.5e+02 Score=31.07 Aligned_cols=62 Identities=16% Similarity=0.046 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDD-------AAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
...++.++..|...+.++.|..+..+.. .|.+ ...+..+|.++.-.++|.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4456666777777777777777776663 2321 335667888999999999998888776543
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.65 E-value=2.8e+02 Score=25.10 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 608 MAEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 608 ~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
....+|..+... +-.-+..|...+..+...|++.+|.++|+.=.+.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344555555443 33355566666666666666666666665544433
No 315
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.35 E-value=1.5e+02 Score=20.37 Aligned_cols=48 Identities=19% Similarity=0.039 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 044169 611 FISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEP 659 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 659 (742)
+..+.+.++.|+ ......-.-+-...|+.+.|...+-.|...+..++.
T Consensus 11 e~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344445555663 222222222334567788888877777766655543
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.01 E-value=2e+02 Score=30.11 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCcHH--H-HHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGI--LPEEA--H-YSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~--~-~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
..++.+++.|...+.++.|..+..... +.. .++.. . +-.++..+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 458888888999999999999888762 111 11211 2 234567778888999998887764
No 317
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.08 E-value=5.4e+02 Score=24.41 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=39.6
Q ss_pred HHHHHhCCChHHHHHHHHHchhCCCCCChhh--HHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHh
Q 044169 190 LAGYAKNALFDQAFSFFLKLDGIDVQPNHYT--YSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAV--SNALLTMYIK 265 (742)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~ 265 (742)
+...++.|+.+....++.. .+..++... -.+.+...+..|+.+-++.+ ++.|..++... ..+.+...+.
T Consensus 28 L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLL----LQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHH----HHcCCCCCccCCCCCcHHHHHHH
Confidence 3344567777776666543 233322211 12344444555666544433 34454433221 1223344456
Q ss_pred CCChHHHHHHHhcc
Q 044169 266 CGMMEDAESVFEGL 279 (742)
Q Consensus 266 ~g~~~~A~~~~~~~ 279 (742)
.|+.+-+..+++.-
T Consensus 101 ~g~~~iv~~Ll~~g 114 (351)
T 3utm_A 101 YGHYEVTELLLKHG 114 (351)
T ss_dssp TTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHCC
Confidence 67766666666543
No 318
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.50 E-value=2.9e+02 Score=28.79 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 644 (742)
....+.|...|.++..+.|++...|+.|+-+....|+.-+|.
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 334445555555555555555555555555555555544443
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.44 E-value=2.8e+02 Score=22.91 Aligned_cols=42 Identities=10% Similarity=-0.119 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044169 287 WTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALAS 328 (742)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 328 (742)
-..++..+...+..-.|.++++.+.+.+...+..|.--.|..
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 65 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRV 65 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 334444444444444555555555544444444443333333
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.08 E-value=2.4e+02 Score=23.34 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHh
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKAC 431 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 431 (742)
.++..+...+..-.|.++++.+.+.+...+..|....|..+
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 33444444444455555555555554444444444444333
Done!