Query 044170
Match_columns 372
No_of_seqs 229 out of 961
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 6.1E-58 1.3E-62 436.4 25.8 279 44-363 32-341 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 4.3E-53 9.4E-58 390.8 13.4 190 89-288 2-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 2.9E-49 6.4E-54 362.7 21.3 171 104-291 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.0 1.8E-07 3.8E-12 92.6 23.6 237 80-334 1-286 (314)
5 PF14592 Chondroitinas_B: Chon 98.5 2.6E-06 5.7E-11 86.9 14.3 183 79-267 6-234 (425)
6 PLN02218 polygalacturonase ADP 98.3 2E-05 4.3E-10 81.3 16.6 122 128-270 217-342 (431)
7 PF13229 Beta_helix: Right han 98.2 1.5E-05 3.3E-10 68.2 10.7 133 128-292 2-138 (158)
8 PLN02188 polygalacturonase/gly 98.2 6.2E-05 1.3E-09 77.1 16.9 106 128-254 180-286 (404)
9 PLN02155 polygalacturonase 98.2 5.5E-05 1.2E-09 77.2 16.1 121 128-269 170-295 (394)
10 PLN03003 Probable polygalactur 98.1 0.00012 2.5E-09 76.0 16.5 99 167-269 185-287 (456)
11 PLN02793 Probable polygalactur 98.1 0.0001 2.2E-09 76.4 15.7 106 128-254 202-308 (443)
12 PF00295 Glyco_hydro_28: Glyco 98.0 0.0001 2.2E-09 73.3 13.2 133 87-254 90-223 (326)
13 PLN03010 polygalacturonase 97.9 0.00073 1.6E-08 69.4 18.2 98 168-269 205-306 (409)
14 PF13229 Beta_helix: Right han 97.8 0.00032 7E-09 59.9 11.7 131 126-288 23-158 (158)
15 TIGR03805 beta_helix_1 paralle 97.8 0.00096 2.1E-08 66.1 15.9 163 106-273 58-247 (314)
16 PF05048 NosD: Periplasmic cop 97.7 0.0026 5.7E-08 59.6 17.7 128 127-288 36-165 (236)
17 PLN02218 polygalacturonase ADP 97.7 0.0039 8.4E-08 64.5 19.0 135 128-293 194-347 (431)
18 TIGR03808 RR_plus_rpt_1 twin-a 97.6 0.0028 6.2E-08 65.4 17.1 100 79-195 56-161 (455)
19 PF12708 Pectate_lyase_3: Pect 97.5 0.0074 1.6E-07 54.9 16.8 176 80-292 21-221 (225)
20 TIGR03808 RR_plus_rpt_1 twin-a 97.5 0.0037 7.9E-08 64.6 15.4 162 111-290 121-332 (455)
21 PF05048 NosD: Periplasmic cop 97.4 0.003 6.5E-08 59.2 12.8 130 127-291 14-144 (236)
22 PLN03003 Probable polygalactur 97.3 0.019 4.2E-07 59.7 18.6 141 90-267 105-261 (456)
23 PLN02155 polygalacturonase 97.3 0.011 2.4E-07 60.5 16.7 133 105-268 116-269 (394)
24 PLN03010 polygalacturonase 97.2 0.024 5.3E-07 58.3 17.6 112 129-268 160-281 (409)
25 PF01696 Adeno_E1B_55K: Adenov 97.2 0.028 6.1E-07 57.1 17.7 175 80-293 57-242 (386)
26 PF00295 Glyco_hydro_28: Glyco 97.1 0.0036 7.8E-08 62.2 11.0 108 106-243 62-184 (326)
27 PLN02793 Probable polygalactur 97.1 0.027 5.9E-07 58.6 17.2 86 128-243 179-269 (443)
28 PLN02480 Probable pectinestera 97.0 0.02 4.3E-07 57.7 14.5 119 79-215 62-198 (343)
29 PLN02188 polygalacturonase/gly 96.9 0.061 1.3E-06 55.4 17.4 158 105-293 123-312 (404)
30 PLN02197 pectinesterase 96.9 0.021 4.5E-07 61.3 14.5 151 32-214 244-424 (588)
31 PF07602 DUF1565: Protein of u 96.7 0.052 1.1E-06 52.3 14.7 188 79-291 17-242 (246)
32 COG5434 PGU1 Endopygalactoruna 96.6 0.022 4.8E-07 60.4 12.0 104 128-254 263-376 (542)
33 smart00656 Amb_all Amb_all dom 96.5 0.091 2E-06 48.5 14.2 136 110-267 45-188 (190)
34 PLN02176 putative pectinestera 96.1 0.17 3.8E-06 50.9 14.9 120 79-215 53-189 (340)
35 PF12708 Pectate_lyase_3: Pect 95.8 0.03 6.5E-07 51.0 7.1 122 110-247 97-221 (225)
36 PLN02170 probable pectinestera 95.7 0.16 3.4E-06 54.0 13.1 114 79-214 239-373 (529)
37 COG3420 NosD Nitrous oxidase a 95.7 0.35 7.6E-06 48.6 14.3 93 106-214 100-192 (408)
38 PLN02416 probable pectinestera 95.5 0.16 3.5E-06 54.1 12.5 114 79-214 244-377 (541)
39 PLN02682 pectinesterase family 95.5 0.31 6.7E-06 49.6 13.8 127 79-224 84-237 (369)
40 PLN02432 putative pectinestera 95.5 0.25 5.4E-06 48.8 12.8 121 79-224 25-162 (293)
41 PLN02304 probable pectinestera 95.4 0.38 8.3E-06 49.1 13.8 128 79-224 89-236 (379)
42 PLN02301 pectinesterase/pectin 95.2 0.29 6.3E-06 52.3 12.8 114 79-214 250-383 (548)
43 PLN02773 pectinesterase 95.1 0.42 9.1E-06 47.7 13.1 114 79-215 19-163 (317)
44 PLN02506 putative pectinestera 95.0 0.31 6.7E-06 52.0 12.5 115 79-214 246-379 (537)
45 PLN02634 probable pectinestera 95.0 0.57 1.2E-05 47.6 13.8 119 79-215 70-215 (359)
46 PLN02665 pectinesterase family 95.0 4.1 8.9E-05 41.6 19.9 120 79-214 82-219 (366)
47 PLN02314 pectinesterase 94.9 0.36 7.9E-06 52.0 12.9 113 79-214 292-425 (586)
48 PF00544 Pec_lyase_C: Pectate 94.7 0.38 8.3E-06 44.6 11.1 118 125-265 74-200 (200)
49 PLN02708 Probable pectinestera 94.7 0.43 9.4E-06 51.1 12.8 113 79-214 255-390 (553)
50 PLN02484 probable pectinestera 94.7 0.4 8.8E-06 51.6 12.4 115 79-214 286-420 (587)
51 PLN02933 Probable pectinestera 94.5 0.69 1.5E-05 49.3 13.5 114 79-214 232-365 (530)
52 PLN02488 probable pectinestera 94.3 0.45 9.8E-06 50.3 11.5 114 79-214 211-344 (509)
53 PLN02713 Probable pectinestera 94.2 0.88 1.9E-05 48.9 13.7 99 79-197 264-386 (566)
54 PLN03043 Probable pectinestera 94.1 0.8 1.7E-05 48.9 13.1 113 79-214 237-373 (538)
55 PLN02201 probable pectinestera 94.1 0.82 1.8E-05 48.6 13.0 114 79-214 220-353 (520)
56 PLN02745 Putative pectinestera 93.9 0.82 1.8E-05 49.4 12.7 123 79-224 299-441 (596)
57 PLN02468 putative pectinestera 93.8 0.82 1.8E-05 49.1 12.6 113 79-214 272-405 (565)
58 PLN02995 Probable pectinestera 93.8 0.62 1.3E-05 49.8 11.6 114 79-214 237-372 (539)
59 PLN02313 Pectinesterase/pectin 93.8 0.62 1.3E-05 50.3 11.7 99 79-196 289-407 (587)
60 PLN02217 probable pectinestera 93.7 0.77 1.7E-05 50.2 12.2 165 79-267 264-485 (670)
61 PF01095 Pectinesterase: Pecti 93.6 0.92 2E-05 44.9 11.7 123 79-224 14-156 (298)
62 PLN02497 probable pectinestera 93.6 1.6 3.4E-05 44.0 13.4 122 79-215 46-183 (331)
63 PLN02990 Probable pectinestera 93.5 1.3 2.9E-05 47.6 13.5 114 79-214 273-407 (572)
64 PLN02916 pectinesterase family 93.4 1.2 2.6E-05 47.2 12.7 114 79-214 201-337 (502)
65 PLN02671 pectinesterase 93.3 1.8 3.8E-05 44.1 13.3 119 79-215 73-219 (359)
66 PRK10531 acyl-CoA thioesterase 91.5 5.4 0.00012 41.4 14.4 121 79-214 96-282 (422)
67 COG5434 PGU1 Endopygalactoruna 91.1 1 2.2E-05 48.1 9.0 134 87-243 236-396 (542)
68 PF08480 Disaggr_assoc: Disagg 91.0 1.5 3.2E-05 40.6 8.7 88 203-292 2-110 (198)
69 COG3866 PelB Pectate lyase [Ca 90.8 1.9 4.2E-05 42.8 9.8 120 170-292 116-252 (345)
70 PF14592 Chondroitinas_B: Chon 87.8 4.1 8.9E-05 42.3 10.1 114 168-292 182-323 (425)
71 COG3420 NosD Nitrous oxidase a 76.3 44 0.00095 34.1 11.9 42 104-147 45-89 (408)
72 PF12541 DUF3737: Protein of u 64.7 1E+02 0.0022 30.4 11.3 81 171-267 130-224 (277)
73 PF03211 Pectate_lyase: Pectat 62.5 17 0.00036 34.6 5.5 44 169-213 95-139 (215)
74 PF08480 Disaggr_assoc: Disagg 57.9 1.6E+02 0.0036 27.5 12.1 72 177-249 32-112 (198)
75 TIGR03804 para_beta_helix para 49.7 40 0.00087 23.0 4.4 41 128-190 1-41 (44)
76 PF07602 DUF1565: Protein of u 49.3 88 0.0019 30.3 8.1 93 106-220 93-193 (246)
77 PRK10123 wcaM putative colanic 49.0 31 0.00068 34.4 5.1 48 132-190 265-312 (464)
78 TIGR03804 para_beta_helix para 47.0 28 0.0006 23.8 3.3 39 173-213 2-40 (44)
79 PF07822 Toxin_13: Neurotoxin 42.6 4.4 9.5E-05 29.3 -1.4 20 25-44 20-39 (55)
80 PF01696 Adeno_E1B_55K: Adenov 39.9 1.8E+02 0.004 30.0 9.1 98 128-243 138-238 (386)
81 PRK10123 wcaM putative colanic 38.3 2.2E+02 0.0047 28.7 9.0 63 48-119 24-87 (464)
82 PF03211 Pectate_lyase: Pectat 35.4 1.9E+02 0.0041 27.5 7.9 50 169-220 74-124 (215)
83 PF03718 Glyco_hydro_49: Glyco 32.7 2.4E+02 0.0053 30.5 8.9 80 167-252 370-452 (582)
84 PLN02698 Probable pectinestera 30.9 1.7E+02 0.0036 31.3 7.4 66 129-214 265-330 (497)
85 KOG1777 Putative Zn-finger pro 27.9 58 0.0013 34.3 3.3 55 93-150 458-516 (625)
86 PF06355 Aegerolysin: Aegeroly 25.9 2.8E+02 0.006 24.2 6.8 70 134-209 14-87 (131)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-58 Score=436.41 Aligned_cols=279 Identities=32% Similarity=0.450 Sum_probs=222.2
Q ss_pred cCcccccC-------CCcCCCCCeEEEEcCCCCCCCCCCCCcchHHHhhcCCCeEEEEeeceEEEeC------ceEEecc
Q 044170 44 GCALGFGI-------KATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQ------QELIVQG 110 (372)
Q Consensus 44 ~~a~GfG~-------~ttGG~gG~v~~VT~~~d~~~~~~~pGsLr~av~~~~P~~IvF~~sg~I~l~------~~l~I~s 110 (372)
...+|||. +||||.||++++|++.+| |...++..+|.+++.-+.|+|.+. ..|.+.|
T Consensus 32 ~~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~s 101 (345)
T COG3866 32 NSFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGS 101 (345)
T ss_pred ccccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeecc
Confidence 34778884 789999999999999988 677899999995555666999887 4577889
Q ss_pred CceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEe-eCCCcEEEEeeeee
Q 044170 111 KKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSI-FGSSNIWLDHLTLS 189 (372)
Q Consensus 111 nkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i-~~s~nVwIDHcs~s 189 (372)
||||.|.+++++|. |.||.|+.+.|||||||+|++...+ ....|+|+| .+++|||||||+|+
T Consensus 102 NkTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~ 164 (345)
T COG3866 102 NKTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFS 164 (345)
T ss_pred ccEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEec
Confidence 99999999999999 9999999999999999999976311 123699999 68999999999999
Q ss_pred c--------CccCccccccCCccEEEeCcEeccCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcceeeeEEEE
Q 044170 190 Q--------AHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHV 260 (372)
Q Consensus 190 ~--------~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~PrvR~G~~hv 260 (372)
. ..||++|+++++++||||||+|++|+|.+|+|.+|+. ..|+..+||+|||||. |+.||+||+|||.+||
T Consensus 165 ~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFk-n~~qR~PriRfG~vHv 243 (345)
T COG3866 165 GGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFK-NLYQRGPRIRFGMVHV 243 (345)
T ss_pred cccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccc-cccccCCceEeeEEEE
Confidence 8 7899999999999999999999999999999999985 4568899999999997 8999999999999999
Q ss_pred eceeeecccceEeecCCC--ceEEEeccEEecCCCCCccceeeeccCCCCCcccceEecCCceEeecceEecCCCCCCC-
Q 044170 261 VNNDYNQWEMYAIGGLKG--PTILSQGNRFFASDNQNTKEVTKRMNCSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQ- 337 (372)
Q Consensus 261 ~NN~~~~~~~yaig~~~~--~~i~~egNyF~~~~~~~~~~vt~r~~~~~~~~~~~~~~s~gd~~~nG~~~~~sG~~~~~- 337 (372)
+||||.....|++...++ ++|++|+|||+....+..---+++. +++|..+ .|++|..++....+
T Consensus 244 yNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~d-----~gsy~~~s~~~~~~~ 310 (345)
T COG3866 244 YNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQD-----SGSYLNSSKSMSVRA 310 (345)
T ss_pred eccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc--------cceEEec-----cCceecccCCccccc
Confidence 999999765454444445 9999999999997554211111111 1444432 34555544443222
Q ss_pred --CCCC--CCCccccCCcchHH-HHhccccc
Q 044170 338 --IEYQ--MDDVIKPKPGTEVE-RITKFAGA 363 (372)
Q Consensus 338 --~~y~--~~~~~~~~p~~~v~-~~t~~aG~ 363 (372)
+.++ ...++++.|.+.|+ .+|++||+
T Consensus 311 ~G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGa 341 (345)
T COG3866 311 GGVTWNPSSYYSYTVDPPEDVKSFVTNYAGA 341 (345)
T ss_pred CCccCCCCCCcccccCChHHhhhhhhccccc
Confidence 2233 33446889999996 67799995
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=4.3e-53 Score=390.85 Aligned_cols=190 Identities=41% Similarity=0.654 Sum_probs=161.4
Q ss_pred CeEEEEeeceEEEeCceEEeccCceEeecCCccEEecCCcEEEe-ccccEEEEceEEeeecCCCCCceecCCCCcCCCCC
Q 044170 89 PLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQ-FVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQ 167 (372)
Q Consensus 89 P~~IvF~~sg~I~l~~~l~I~snkTI~G~ga~~~I~~G~gi~i~-~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~ 167 (372)
|++ |+++|+|+++.+|.|+|||||+|+|++++|. +.|+.|. +++|||||||+|++.. +...++..+....
T Consensus 2 ~~i--i~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~ 72 (200)
T PF00544_consen 2 PLI--IKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDS 72 (200)
T ss_dssp -EE--EEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEE
T ss_pred cEE--EEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccc
Confidence 554 5677999999999999999999999999999 8899997 8999999999999740 1112222233446
Q ss_pred CCCCeEEeeCCCcEEEEeeeeecC--------ccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEe
Q 044170 168 SDGDAVSIFGSSNIWLDHLTLSQA--------HDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAF 239 (372)
Q Consensus 168 ~~~DaI~i~~s~nVwIDHcs~s~~--------~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~ 239 (372)
.+.|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|.+|+|+||+|++|....+..++|||||
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hh 152 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHH 152 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEe
Confidence 789999999999999999999999 999999999999999999999999999999999887666669999999
Q ss_pred eEEcCCCCCcCcceeeeEEEEeceeeecccceEeecCCCceEEEeccEE
Q 044170 240 NRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRF 288 (372)
Q Consensus 240 N~f~~~~~~R~PrvR~G~~hv~NN~~~~~~~yaig~~~~~~i~~egNyF 288 (372)
|||. ++.+|+||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 153 N~f~-~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 153 NYFA-NTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp -EEE-EEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred EEEC-chhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9998 89999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=2.9e-49 Score=362.68 Aligned_cols=171 Identities=54% Similarity=0.824 Sum_probs=159.5
Q ss_pred ceEEeccCceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEE
Q 044170 104 QELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWL 183 (372)
Q Consensus 104 ~~l~I~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwI 183 (372)
.+|.|+|||||+|+|++++|+ |++|.|+.++|||||||+|++..+. ..+++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~---------------~~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV---------------YGSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC---------------CCCCCCEEEEeCCCeEEE
Confidence 579999999999999999998 9999999899999999999976432 136889999999999999
Q ss_pred EeeeeecC---------ccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccee
Q 044170 184 DHLTLSQA---------HDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR 254 (372)
Q Consensus 184 DHcs~s~~---------~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR 254 (372)
|||+|+|+ .|+++|++.++++||||||+|.+|.|++|+|++|++..+..++||+|||||+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998876666889999999998 7999999999
Q ss_pred eeEEEEeceeeecccceEeecCCCceEEEeccEEecC
Q 044170 255 FGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFAS 291 (372)
Q Consensus 255 ~G~~hv~NN~~~~~~~yaig~~~~~~i~~egNyF~~~ 291 (372)
+|.+|++||||++|..|+++.+.++++++|+|||++.
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.98 E-value=1.8e-07 Score=92.57 Aligned_cols=237 Identities=15% Similarity=0.149 Sum_probs=131.4
Q ss_pred hHHHhhcCCCe-EEEEeeceEEEeCceEEec-cCceEeecCCc-cEEec------CCcEEEeccccEEEEceEEeeecCC
Q 044170 80 LRHAVIQKEPL-WIIFAKDMNIKLQQELIVQ-GKKTIDGRGAN-VHIAN------GAGFMLQFVQNVIIHGIHIHNISPR 150 (372)
Q Consensus 80 Lr~av~~~~P~-~IvF~~sg~I~l~~~l~I~-snkTI~G~ga~-~~I~~------G~gi~i~~a~NVIIRnl~i~~~~~~ 150 (372)
|.+|+.+-.|- +|++. .|+-++...|.|. +++||.|.+.. ..|.. +.+|.+ .++||.|++|+|++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 34566665554 34444 4777777778886 78888888764 33321 334555 47777777777765421
Q ss_pred CCCceecCCCCcCC-----------CCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCcee
Q 044170 151 SGGMIRDSVDHVGK-----------RGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAI 219 (372)
Q Consensus 151 ~~g~i~~~~~~~~~-----------~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~ 219 (372)
.|.....-+.+-. ......++|.+..++++-|.+|.++...|--|-+ ..|++++|++|.+.+-..++
T Consensus 78 -~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 78 -DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred -CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 1111100000000 0113457788888888888888887776643344 35778888888887655555
Q ss_pred EecCCCCccCCCceeEEEEeeEEcCCCCCc--------CcceeeeEEEEeceeeeccc----------------ceEeec
Q 044170 220 LLGASDTFTEDKKMQVTVAFNRFDKGLVQR--------MPCVRFGFAHVVNNDYNQWE----------------MYAIGG 275 (372)
Q Consensus 220 LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R--------~PrvR~G~~hv~NN~~~~~~----------------~yaig~ 275 (372)
.+-.+. ++.+.+|.+. ++..= .|.+-...+.|.||.+.+.. ..+|-.
T Consensus 156 ~i~~S~--------~~~v~~N~~~-~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i 226 (314)
T TIGR03805 156 EIENSQ--------NADVYNNIAT-NNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVV 226 (314)
T ss_pred EEEecC--------CcEEECCEEe-ccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEE
Confidence 444332 4667777765 22210 11121235777777776431 112222
Q ss_pred CCCceEEEeccEEecCCCCCccceeeec-c----CCCCCcccceEecCCceEeecceEecCCCC
Q 044170 276 LKGPTILSQGNRFFASDNQNTKEVTKRM-N----CSPEEGKSWIWRSEGDVFLNGAYFNSSGDP 334 (372)
Q Consensus 276 ~~~~~i~~egNyF~~~~~~~~~~vt~r~-~----~~~~~~~~~~~~s~gd~~~nG~~~~~sG~~ 334 (372)
....++.+++|.|..-.....--+.... + +.+..|.. -..++.+-.+.|...|..
T Consensus 227 ~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 227 MANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDP----YPRNISIHDNTFSDGGTN 286 (314)
T ss_pred EcccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccC----CCcceEEEccEeecCCCC
Confidence 3335788999999887654221111110 0 11112221 237888888998888874
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.47 E-value=2.6e-06 Score=86.91 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=81.5
Q ss_pred chHHHhhcCCCeEEEEeeceEEEeCceEEec------cCceEeecCC-ccEEecCCcEEEeccccEEEEceEEeeecCCC
Q 044170 79 TLRHAVIQKEPLWIIFAKDMNIKLQQELIVQ------GKKTIDGRGA-NVHIANGAGFMLQFVQNVIIHGIHIHNISPRS 151 (372)
Q Consensus 79 sLr~av~~~~P~~IvF~~sg~I~l~~~l~I~------snkTI~G~ga-~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~ 151 (372)
+|..||.+-.|--.++=.+|+-+ ..+|.+. ..+||..+.+ .+.|.+...|.|. .+.++|.+|.|+++.+..
T Consensus 6 ~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~~ 83 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTPT 83 (425)
T ss_dssp HHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---T
T ss_pred HHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCCC
Confidence 48888876544322223347665 3355553 3589998855 4788744577774 799999999999875432
Q ss_pred CCceec---------CC--------CCcCCCCCCCCCeEEe----eCCCcEEEEeeeeecCc-cC-ccccc-------cC
Q 044170 152 GGMIRD---------SV--------DHVGKRGQSDGDAVSI----FGSSNIWLDHLTLSQAH-DG-LIDAI-------QA 201 (372)
Q Consensus 152 ~g~i~~---------~~--------~~~~~~~~~~~DaI~i----~~s~nVwIDHcs~s~~~-Dg-~idv~-------~~ 201 (372)
...+.- +. +.|... ..+.+...+ -.++|--||||+|..-. .| +|-+. ..
T Consensus 84 ~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~-~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 84 GAVISFRNGGDASYANHCRLTNCVIDDFNNP-DREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TT--TTS--SEEE-SSS-EEES-EEES--SS--S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS---
T ss_pred CceEEeecCCCcceecceEEEeEEeeccCCc-ccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccc
Confidence 221110 00 011110 111223333 24677778999999732 22 22222 23
Q ss_pred CccEEEeCcEecc-------CCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCc--ceeeeEEEEeceeeec
Q 044170 202 STAITISNCHFSN-------HDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMP--CVRFGFAHVVNNDYNQ 267 (372)
Q Consensus 202 s~~VTISnn~f~~-------h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~P--rvR~G~~hv~NN~~~~ 267 (372)
..+-+|.+|+|.+ ...++-||.|.....+ -+.++.+|||. +|.+-.= .++-+.--+.||.|++
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe-~cdGE~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFE-RCDGEVEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEE-EE-SSSEEEEEESBT-EEES-EEES
T ss_pred ccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhh-hcCCceeEEEeecCCceEeccEEEe
Confidence 4578999999995 4567888977543222 37899999998 6876533 2333445556666654
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.32 E-value=2e-05 Score=81.26 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=87.4
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEE
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITI 207 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTI 207 (372)
.|.+..++||+|+||+|... . .....|+|.+.+++||.|.+|.++.+ |.+|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~--~---------------~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAP--A---------------DSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeCC--C---------------CCCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 34445789999999999742 1 13477999999999999999999987 557799999999999
Q ss_pred eCcEeccCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcceee---eEEEEeceeeecccc
Q 044170 208 SNCHFSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVRF---GFAHVVNNDYNQWEM 270 (372)
Q Consensus 208 Snn~f~~h~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~PrvR~---G~~hv~NN~~~~~~~ 270 (372)
++|.+.. ..++-||+--.+ ..+...+|++.++.|. + ..+.=|++- |.-.+-|=.|.|..+
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m 342 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLS-G-TDNGVRIKTYQGGSGTASNIIFQNIQM 342 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEe-c-CCcceEEeecCCCCeEEEEEEEEeEEE
Confidence 9999953 345678865332 2345678999999996 3 456666652 333444444555443
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.20 E-value=1.5e-05 Score=68.17 Aligned_cols=133 Identities=24% Similarity=0.272 Sum_probs=86.6
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEE
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITI 207 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTI 207 (372)
||.|....++.|++.+|++. ..++|.+.++..+.|+.|+|.+...++ .+. ...+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi-~~~-~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGI-YVS-GGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSE-EEE-CCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEE-EEe-cCCCeEE
Confidence 68888889999999999953 468999999999999999999944444 543 3589999
Q ss_pred eCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccee--eeEEEEeceeeecccceEeecCCC--ceEEE
Q 044170 208 SNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR--FGFAHVVNNDYNQWEMYAIGGLKG--PTILS 283 (372)
Q Consensus 208 Snn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR--~G~~hv~NN~~~~~~~yaig~~~~--~~i~~ 283 (372)
++|.|.+......+-.+ ..+++.+|.|. ++..-.=.+. ...+.+.||.+.+...+++..... +.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~--------~~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGS--------SNITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS---------CS-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEec--------CCceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 99999987744333322 26889999997 4544344343 345888999998876555554443 48889
Q ss_pred eccEEecCC
Q 044170 284 QGNRFFASD 292 (372)
Q Consensus 284 egNyF~~~~ 292 (372)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999997654
No 8
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.20 E-value=6.2e-05 Score=77.09 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=80.3
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEE
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITI 207 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTI 207 (372)
.|.+..++||.|++|+|.... .....|+|.+..++||+|.+|.++.+.| .|.++.++++|+|
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~-----------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I 241 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPS-----------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTI 241 (404)
T ss_pred EEEEEccccEEEEEEEEeCCC-----------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEE
Confidence 455557899999999997421 1346799999999999999999998877 6788889999999
Q ss_pred eCcEeccCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCccee
Q 044170 208 SNCHFSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVR 254 (372)
Q Consensus 208 Snn~f~~h~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~PrvR 254 (372)
+|+.+.. ..++-||+--.+ ......+|++.++.|. + ..+.=|++
T Consensus 242 ~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~GiriK 286 (404)
T PLN02188 242 TRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRIK 286 (404)
T ss_pred EEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEEE
Confidence 9999854 345678863221 2245679999999997 3 45555664
No 9
>PLN02155 polygalacturonase
Probab=98.18 E-value=5.5e-05 Score=77.20 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=86.4
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEE
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITI 207 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTI 207 (372)
-+.+..++||.|+||+|.... .....|+|.+..++||+|.+|.+..+.| .|.++.++++|+|
T Consensus 170 ~i~~~~~~nv~i~~v~I~~p~-----------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I 231 (394)
T PLN02155 170 HMTLNGCTNVVVRNVKLVAPG-----------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLI 231 (394)
T ss_pred EEEEECeeeEEEEEEEEECCC-----------------CCCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEE
Confidence 344456788888888887421 1356799999999999999999998877 6688889999999
Q ss_pred eCcEeccCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcceee----eEEEEeceeeeccc
Q 044170 208 SNCHFSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVRF----GFAHVVNNDYNQWE 269 (372)
Q Consensus 208 Snn~f~~h~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~PrvR~----G~~hv~NN~~~~~~ 269 (372)
+++.+.. ..++-||+.-.+ ..+...+|++.++.|. + ..+.=|++- +.-.|-|=.|.|..
T Consensus 232 ~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~~GirIKT~~~~~gG~v~nI~f~ni~ 295 (394)
T PLN02155 232 TKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-G-SQNGVRIKSWARPSTGFVRNVFFQDLV 295 (394)
T ss_pred EEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-C-CCcEEEEEEecCCCCEEEEEEEEEeEE
Confidence 9999975 335778875322 2345679999999997 4 455566642 12344555555544
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.10 E-value=0.00012 Score=76.03 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEecCCCCcc-CCCceeEEEEeeEEcCC
Q 044170 167 QSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFT-EDKKMQVTVAFNRFDKG 245 (372)
Q Consensus 167 ~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~-~d~~~~vTi~~N~f~~~ 245 (372)
....|+|.+..++||+|.+|.++.+.| +|.++.++++|+|+++.+.. ..++-||+--+.. .+...+|++.++.|. +
T Consensus 185 spNTDGIDi~~S~nV~I~n~~I~tGDD-CIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~ 261 (456)
T PLN03003 185 SPNTDGIDVGASSNVVIQDCIIATGDD-CIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-G 261 (456)
T ss_pred CCCCCcEeecCcceEEEEecEEecCCC-eEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-C
Confidence 357799999999999999999987754 56888899999999999864 3356788653322 345789999999997 4
Q ss_pred CCCcCcceee---eEEEEeceeeeccc
Q 044170 246 LVQRMPCVRF---GFAHVVNNDYNQWE 269 (372)
Q Consensus 246 ~~~R~PrvR~---G~~hv~NN~~~~~~ 269 (372)
..+.=|++- |.-.+-|=.|.|..
T Consensus 262 -T~nGvRIKT~~Gg~G~v~nItf~nI~ 287 (456)
T PLN03003 262 -TMNGARIKTWQGGSGYARMITFNGIT 287 (456)
T ss_pred -CCcEEEEEEeCCCCeEEEEEEEEeEE
Confidence 455667652 22334444444443
No 11
>PLN02793 Probable polygalacturonase
Probab=98.08 E-value=0.0001 Score=76.41 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=78.7
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEE
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITI 207 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTI 207 (372)
.|.+..++||.|++|+|.... .....|+|.+..++||+|.+|.+..+ |..|.++.++++|+|
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~I 263 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIKI 263 (443)
T ss_pred EEEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEEE
Confidence 345557889999999998431 13577999999999999999999865 556688888999999
Q ss_pred eCcEeccCCceeEecCCCC-ccCCCceeEEEEeeEEcCCCCCcCccee
Q 044170 208 SNCHFSNHDKAILLGASDT-FTEDKKMQVTVAFNRFDKGLVQRMPCVR 254 (372)
Q Consensus 208 Snn~f~~h~k~~LiG~sd~-~~~d~~~~vTi~~N~f~~~~~~R~PrvR 254 (372)
+|+.+.. ..++-||+--. .......+|++.++.|. + ..+.=|++
T Consensus 264 ~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~-t~~GirIK 308 (443)
T PLN02793 264 RNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-N-TDNGVRIK 308 (443)
T ss_pred EEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-C-CCceEEEE
Confidence 9999864 23466886422 12345678999999996 3 45666665
No 12
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.98 E-value=0.0001 Score=73.28 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=90.7
Q ss_pred CCCeEEEEeeceEEEeCceEEeccCceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCC
Q 044170 87 KEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRG 166 (372)
Q Consensus 87 ~~P~~IvF~~sg~I~l~~~l~I~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~ 166 (372)
..|+.+.|...-.+.++ ++||.-. +...+.+..++||.|++|+|+....
T Consensus 90 ~rp~~i~~~~~~~~~i~-------~i~~~ns-------p~w~~~~~~~~nv~i~~i~I~~~~~----------------- 138 (326)
T PF00295_consen 90 RRPRLIRFNNCKNVTIE-------GITIRNS-------PFWHIHINDCDNVTISNITINNPAN----------------- 138 (326)
T ss_dssp SSSESEEEEEEEEEEEE-------SEEEES--------SSESEEEESEEEEEEESEEEEEGGG-----------------
T ss_pred cccceeeeeeecceEEE-------eeEecCC-------CeeEEEEEccCCeEEcceEEEecCC-----------------
Confidence 46787777743222222 3333321 2456777789999999999996421
Q ss_pred CCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEecCCCCcc-CCCceeEEEEeeEEcCC
Q 044170 167 QSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFT-EDKKMQVTVAFNRFDKG 245 (372)
Q Consensus 167 ~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~-~d~~~~vTi~~N~f~~~ 245 (372)
....|+|.+.+++||.|++|.+..+ |..|.++.++.+|+|+||.|.. ..++-+|+.-... .....+|+|.++.|. +
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~-~ 215 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII-N 215 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-S
T ss_pred CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-c
Confidence 2467999999999999999999777 5666888888899999999974 3446677532211 123568999999997 4
Q ss_pred CCCcCccee
Q 044170 246 LVQRMPCVR 254 (372)
Q Consensus 246 ~~~R~PrvR 254 (372)
..|.-|++
T Consensus 216 -t~~gi~iK 223 (326)
T PF00295_consen 216 -TDNGIRIK 223 (326)
T ss_dssp -ESEEEEEE
T ss_pred -cceEEEEE
Confidence 45666665
No 13
>PLN03010 polygalacturonase
Probab=97.91 E-value=0.00073 Score=69.39 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=68.4
Q ss_pred CCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEecCCCCc-cCCCceeEEEEeeEEcCCC
Q 044170 168 SDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGL 246 (372)
Q Consensus 168 ~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~ 246 (372)
...|+|.+..++||+|.+|.+..+ |..|.++.++++++|.++.... ..++-||+.-+. ..+...+|++.++.|. +
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~- 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q- 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-
Confidence 577999999999999999988877 6667888888888888777653 234667764322 2344678999999997 3
Q ss_pred CCcCcceee---eEEEEeceeeeccc
Q 044170 247 VQRMPCVRF---GFAHVVNNDYNQWE 269 (372)
Q Consensus 247 ~~R~PrvR~---G~~hv~NN~~~~~~ 269 (372)
..+.=|++. +.-.|-|=.|.|..
T Consensus 281 t~~GirIKt~~G~~G~v~nItf~nI~ 306 (409)
T PLN03010 281 TTNGARIKTWQGGQGYARNISFENIT 306 (409)
T ss_pred CCcceEEEEecCCCEEEEEeEEEeEE
Confidence 455556652 23345555555544
No 14
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.81 E-value=0.00032 Score=59.88 Aligned_cols=131 Identities=22% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccE
Q 044170 126 GAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAI 205 (372)
Q Consensus 126 G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~V 205 (372)
+.||.+...+++.|++-+|++ ...+|.+.+..++.|+.|.|+... ..+.+. .+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCc
Confidence 557888777888888888883 357788888899999999999888 334443 67899
Q ss_pred EEeCcEeccCCc-eeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcceee-e--EEEEeceeeecccceEeecCCCce-
Q 044170 206 TISNCHFSNHDK-AILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF-G--FAHVVNNDYNQWEMYAIGGLKGPT- 280 (372)
Q Consensus 206 TISnn~f~~h~k-~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR~-G--~~hv~NN~~~~~~~yaig~~~~~~- 280 (372)
+|++|.|.+... ++.+.. ....+++.+|.|. ++....=.+.. . .+-+.+|.+++...+++.......
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999988654 444442 1236888999997 44433333332 2 466788988887778886555544
Q ss_pred EEEeccEE
Q 044170 281 ILSQGNRF 288 (372)
Q Consensus 281 i~~egNyF 288 (372)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 88888887
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.77 E-value=0.00096 Score=66.14 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=97.0
Q ss_pred EEec-cCceEeecCCccEEecCCcEEEeccccEEEEceEEeeecC-----CCCCce-ecCCCCc--CCC-CCCCCCeEEe
Q 044170 106 LIVQ-GKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISP-----RSGGMI-RDSVDHV--GKR-GQSDGDAVSI 175 (372)
Q Consensus 106 l~I~-snkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~-----~~~g~i-~~~~~~~--~~~-~~~~~DaI~i 175 (372)
+.+. +++||.+.+-. =.++.||.+++++|++||++++..... ..-|.. ..+.+.. ... .....++|.+
T Consensus 58 i~v~a~~VtI~~ltI~--~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 58 LLVTSDDVTLSDLAVE--NTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred EEEEeCCeEEEeeEEE--cCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE
Confidence 4443 56666666310 012567777888888888888862210 001111 0010000 000 1234458999
Q ss_pred eCCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcC-----
Q 044170 176 FGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRM----- 250 (372)
Q Consensus 176 ~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~----- 250 (372)
..++++.|-+|.+.....|..-. .|.++.|.+|.|.+-..++++-..+....-...++++++|.|. ++...+
T Consensus 136 ~~s~~~~v~nN~~~~n~~GI~i~--~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~~n~~~~g 212 (314)
T TIGR03805 136 GQSQNIVVRNNVAEENVAGIEIE--NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNTPNFAPAG 212 (314)
T ss_pred CCCCCeEEECCEEccCcceEEEE--ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCCCCCcccC
Confidence 99999999999999887775332 4789999999999877676663222211112358999999997 444332
Q ss_pred ------cceee------eEEEEeceeeecccceEe
Q 044170 251 ------PCVRF------GFAHVVNNDYNQWEMYAI 273 (372)
Q Consensus 251 ------PrvR~------G~~hv~NN~~~~~~~yai 273 (372)
|.-+. -.+.++||.+.+....++
T Consensus 213 n~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 213 SIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 21111 246999999998655544
No 16
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.74 E-value=0.0026 Score=59.57 Aligned_cols=128 Identities=23% Similarity=0.176 Sum_probs=59.4
Q ss_pred CcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEE
Q 044170 127 AGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAIT 206 (372)
Q Consensus 127 ~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VT 206 (372)
.|+.+..++++.|++.+|++. ..+|.+..++++-|..|.++....|.. +. .+.+.+
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~-l~-~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY-LM-GSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE-EE-cCCCcE
Confidence 345555566666666666532 344555555555555555555554432 22 222335
Q ss_pred EeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcceee-eEEEEeceeeecccceEee-cCCCceEEEe
Q 044170 207 ISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF-GFAHVVNNDYNQWEMYAIG-GLKGPTILSQ 284 (372)
Q Consensus 207 ISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR~-G~~hv~NN~~~~~~~yaig-~~~~~~i~~e 284 (372)
|++|.|.+...++++-.+. ..++..|.|. + ....-.+.. ....+.+|.+.+...|+|. ........+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~-~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTIS-N-NGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEEe-C-CCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 5555555544444333222 2445555553 1 222222222 2344555555554444544 3333334455
Q ss_pred ccEE
Q 044170 285 GNRF 288 (372)
Q Consensus 285 gNyF 288 (372)
+|+|
T Consensus 162 ~N~f 165 (236)
T PF05048_consen 162 NNNF 165 (236)
T ss_pred CCCc
Confidence 5555
No 17
>PLN02218 polygalacturonase ADPG
Probab=97.66 E-value=0.0039 Score=64.55 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=90.1
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeec-----CccCccccccCC
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQAS 202 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~-----~~Dg~idv~~~s 202 (372)
-|.+.+++|+.|++|+|++. ..=.|.+..++||.|++.++.. -.||. |+. .+
T Consensus 194 ~i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di~-ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HIT-NT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-eec-cc
Confidence 36778999999999999964 2346888999999999999975 35664 763 58
Q ss_pred ccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCC------CcCc-ceeeeEEEEeceeeecccceEee-
Q 044170 203 TAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLV------QRMP-CVRFGFAHVVNNDYNQWEMYAIG- 274 (372)
Q Consensus 203 ~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~------~R~P-rvR~G~~hv~NN~~~~~~~yaig- 274 (372)
++|+|++|.|...+-..-|.+. ..+|++.++.+.++.. .+.+ ..-.-.++|-|+.+.+.. +++.
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksg-------s~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRI 322 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESG-------SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRI 322 (431)
T ss_pred ceEEEEccEEecCCceEEecCC-------CceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEE
Confidence 8999999999988888777654 2378888888853211 0111 000124666666666532 2331
Q ss_pred -c-----CCCceEEEeccEEecCCC
Q 044170 275 -G-----LKGPTILSQGNRFFASDN 293 (372)
Q Consensus 275 -~-----~~~~~i~~egNyF~~~~~ 293 (372)
. +.-..|.+++..+++...
T Consensus 323 KT~~Gg~G~v~nI~f~ni~m~~V~~ 347 (431)
T PLN02218 323 KTYQGGSGTASNIIFQNIQMENVKN 347 (431)
T ss_pred eecCCCCeEEEEEEEEeEEEEcccc
Confidence 1 112356777777766544
No 18
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.62 E-value=0.0028 Score=65.37 Aligned_cols=100 Identities=9% Similarity=0.143 Sum_probs=66.7
Q ss_pred chHHHhhcCC-C-eEEEEeeceEEEeCceEEeccCceEeecCCcc--EEecCCcEEE-eccccEEEEceEEeeecCCCCC
Q 044170 79 TLRHAVIQKE-P-LWIIFAKDMNIKLQQELIVQGKKTIDGRGANV--HIANGAGFML-QFVQNVIIHGIHIHNISPRSGG 153 (372)
Q Consensus 79 sLr~av~~~~-P-~~IvF~~sg~I~l~~~l~I~snkTI~G~ga~~--~I~~G~gi~i-~~a~NVIIRnl~i~~~~~~~~g 153 (372)
.|.+|+.+-. | -.|++.. |+- +..+|.+.+++||.|+.... .|.++.++.+ ..++||-|++|+|++. |
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs-----G 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG-----G 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC-----C
Confidence 3677775421 2 3455553 332 34679999999999995422 3654445543 4799999999999853 2
Q ss_pred ceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCc-cCc
Q 044170 154 MIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAH-DGL 195 (372)
Q Consensus 154 ~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~-Dg~ 195 (372)
.......-+|.+.+++++-|.+|+|.... -|.
T Consensus 129 ----------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI 161 (455)
T TIGR03808 129 ----------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGI 161 (455)
T ss_pred ----------CcccCCCCEEEEccCCceEEEeeEEEcCCcceE
Confidence 11123445788889999999999999873 554
No 19
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.51 E-value=0.0074 Score=54.94 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=94.0
Q ss_pred hHHHh--h-cCCCeEEEEeeceEEEeCceEEeccCceEeecCCc-cEEe---cCCcEE-------Eec-ccc--EEEEce
Q 044170 80 LRHAV--I-QKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGAN-VHIA---NGAGFM-------LQF-VQN--VIIHGI 142 (372)
Q Consensus 80 Lr~av--~-~~~P~~IvF~~sg~I~l~~~l~I~snkTI~G~ga~-~~I~---~G~gi~-------i~~-a~N--VIIRnl 142 (372)
|.+|+ . ..+..+|.|- .|+-.+.++|.+.+++||.|.|.. ..+. ....+. +.. ..+ +-|+||
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 67777 2 3444655554 589999999999999999999874 3332 111111 111 122 449999
Q ss_pred EEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeC------cEeccCC
Q 044170 143 HIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISN------CHFSNHD 216 (372)
Q Consensus 143 ~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISn------n~f~~h~ 216 (372)
.|....... ....++|.+..+++++|++|++..+..-.+.+. ..+..++.+ ..|.++.
T Consensus 100 ~i~~~~~~~---------------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (225)
T PF12708_consen 100 TIDGNGIDP---------------NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGS 163 (225)
T ss_dssp EEEETCGCE----------------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCE
T ss_pred EEEcccccC---------------CCCceEEEEEeCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeeccce
Confidence 998542110 112577888889999999999998654444443 111212211 1122100
Q ss_pred ceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcceee--eEEEEeceeeecccceEeecCCCceEEEeccEEecCC
Q 044170 217 KAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF--GFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASD 292 (372)
Q Consensus 217 k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR~--G~~hv~NN~~~~~~~yaig~~~~~~i~~egNyF~~~~ 292 (372)
..+.+ .|++. ...+.- +.. -.+.+.|+++.+....+|....+..+.+++|.|.+..
T Consensus 164 ----------------~~~~~-~~~~~--~~~~~g-~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 164 ----------------NNVIV-NNCIF--NGGDNG-IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp ----------------EEEEE-ECEEE--ESSSCS-EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred ----------------eEEEE-CCccc--cCCCce-eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 01111 22221 011111 222 2456677777665556666555666888888887653
No 20
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.47 E-value=0.0037 Score=64.59 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=90.5
Q ss_pred CceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCc--CC-CCCCCCCeEEeeCCCcEEEEeee
Q 044170 111 KKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHV--GK-RGQSDGDAVSIFGSSNIWLDHLT 187 (372)
Q Consensus 111 nkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~--~~-~~~~~~DaI~i~~s~nVwIDHcs 187 (372)
.+||+|.|.+..-. -++|.++.++++.|++.+|++.- . -|......... +. -......+|.+..++++.|.+++
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg-~-FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~ 197 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSG-G-NGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNT 197 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCC-c-ceEEEEcCcceEecceEeccccceEEEeccCCCEEECCE
Confidence 34666666543322 45788889999999999999651 0 11111110000 00 00123345888888899999999
Q ss_pred eecCccCcccccc-----------------------------------CCccEEEeCcEeccCCceeEecCCCCccCCCc
Q 044170 188 LSQAHDGLIDAIQ-----------------------------------ASTAITISNCHFSNHDKAILLGASDTFTEDKK 232 (372)
Q Consensus 188 ~s~~~Dg~idv~~-----------------------------------~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~ 232 (372)
++.+.|+.|-+.+ .+.+++|+.|.++++.+-.+.+.+.+
T Consensus 198 I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss------ 271 (455)
T TIGR03808 198 IIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS------ 271 (455)
T ss_pred EEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc------
Confidence 9998885444332 25688888888888875445553322
Q ss_pred eeEEEEeeEEcCCCCCcCcceee-e-------E-EEEeceeeecc-cceEee-cCCCceE-EEeccEEec
Q 044170 233 MQVTVAFNRFDKGLVQRMPCVRF-G-------F-AHVVNNDYNQW-EMYAIG-GLKGPTI-LSQGNRFFA 290 (372)
Q Consensus 233 ~~vTi~~N~f~~~~~~R~PrvR~-G-------~-~hv~NN~~~~~-~~yaig-~~~~~~i-~~egNyF~~ 290 (372)
++.|..|.|. ++|| + . ..+.||.++.. ..|++- ..++.++ .++||...+
T Consensus 272 -~~~i~~N~~~--------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 -NIQITGNSVS--------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred -CcEEECcEee--------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 4445555553 2333 2 1 23556666543 345553 2233333 456666654
No 21
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.39 E-value=0.003 Score=59.21 Aligned_cols=130 Identities=22% Similarity=0.130 Sum_probs=100.7
Q ss_pred CcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEE
Q 044170 127 AGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAIT 206 (372)
Q Consensus 127 ~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VT 206 (372)
.||.+..++++.|++..+.. ..|+|.+..+.++-|..++++....|.. + ..+..++
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~----------------------~~~gi~~~~s~~~~I~~n~i~~~~~GI~-~-~~s~~~~ 69 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISN----------------------SRDGIYVENSDNNTISNNTISNNRYGIH-L-MGSSNNT 69 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEe----------------------CCCEEEEEEcCCeEEEeeEEECCCeEEE-E-EccCCCE
Confidence 68889899999999988874 3588989999999999999999977753 3 3577899
Q ss_pred EeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcceeee-EEEEeceeeecccceEeecCCCceEEEec
Q 044170 207 ISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFG-FAHVVNNDYNQWEMYAIGGLKGPTILSQG 285 (372)
Q Consensus 207 ISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR~G-~~hv~NN~~~~~~~yaig~~~~~~i~~eg 285 (372)
|++|.|.+...++++..+. +.++..|.|. ++.. ...+... ...|.+|.+. -..++|-........+++
T Consensus 70 i~~n~i~~n~~Gi~l~~s~--------~~~I~~N~i~-~n~~-GI~l~~s~~~~I~~N~i~-~~~~GI~l~~s~~n~I~~ 138 (236)
T PF05048_consen 70 IENNTISNNGYGIYLMGSS--------NNTISNNTIS-NNGY-GIYLYGSSNNTISNNTIS-NNGYGIYLSSSSNNTITG 138 (236)
T ss_pred EEeEEEEccCCCEEEEcCC--------CcEEECCEec-CCCc-eEEEeeCCceEEECcEEe-CCCEEEEEEeCCCCEEEC
Confidence 9999999877766665543 4589999997 4444 4444433 3678999998 455787766667778889
Q ss_pred cEEecC
Q 044170 286 NRFFAS 291 (372)
Q Consensus 286 NyF~~~ 291 (372)
|.|..-
T Consensus 139 N~i~~n 144 (236)
T PF05048_consen 139 NTISNN 144 (236)
T ss_pred eEEeCC
Confidence 999887
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.30 E-value=0.019 Score=59.74 Aligned_cols=141 Identities=17% Similarity=0.330 Sum_probs=94.1
Q ss_pred eEEEEeeceEEEeCceEEeccCceEeecCCccE----EecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCC
Q 044170 90 LWIIFAKDMNIKLQQELIVQGKKTIDGRGANVH----IANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKR 165 (372)
Q Consensus 90 ~~IvF~~sg~I~l~~~l~I~snkTI~G~ga~~~----I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~ 165 (372)
.||.|..- ..|.|.-.=||+|||+.-- -. -..|.+.+++|+.|++|++++.
T Consensus 105 ~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~r-P~~l~f~~~~nv~I~gitl~NS------------------ 159 (456)
T PLN03003 105 QWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSR-PTALKFRSCNNLRLSGLTHLDS------------------ 159 (456)
T ss_pred ceEEEEcc------cceEEeccceEeCCchhhhhcccCC-ceEEEEEecCCcEEeCeEEecC------------------
Confidence 46766521 2355554458888875310 01 1246778999999999999964
Q ss_pred CCCCCCeEEeeCCCcEEEEeeeeec-----CccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEee
Q 044170 166 GQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFN 240 (372)
Q Consensus 166 ~~~~~DaI~i~~s~nVwIDHcs~s~-----~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N 240 (372)
..=.|.+.+++||.|++.++.. -.||. |+ ..|++|+|.+|.|..-+...-+.+.. .+|++.++
T Consensus 160 ---p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~ 227 (456)
T PLN03003 160 ---PMAHIHISECNYVTISSLRINAPESSPNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGI 227 (456)
T ss_pred ---CcEEEEEeccccEEEEEEEEeCCCCCCCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEee
Confidence 2346888899999999999976 35775 76 36899999999999988888777542 36788777
Q ss_pred EEcCCC------CCcCcc-eeeeEEEEeceeeec
Q 044170 241 RFDKGL------VQRMPC-VRFGFAHVVNNDYNQ 267 (372)
Q Consensus 241 ~f~~~~------~~R~Pr-vR~G~~hv~NN~~~~ 267 (372)
.+.++. ..+... --.-.++|.|+.+++
T Consensus 228 ~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~ 261 (456)
T PLN03003 228 DCGPGHGISIGSLGKDGETATVENVCVQNCNFRG 261 (456)
T ss_pred EEECCCCeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence 765311 011110 011256778888776
No 23
>PLN02155 polygalacturonase
Probab=97.30 E-value=0.011 Score=60.49 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=90.5
Q ss_pred eEEeccCceEeecCCccEEe--------c-CCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEe
Q 044170 105 ELIVQGKKTIDGRGANVHIA--------N-GAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSI 175 (372)
Q Consensus 105 ~l~I~snkTI~G~ga~~~I~--------~-G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i 175 (372)
.+.|.. =||+|||..---. + -..|.+.+++||.|++|++++. ..=.|.+
T Consensus 116 ~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS---------------------p~w~i~~ 173 (394)
T PLN02155 116 RFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS---------------------QVSHMTL 173 (394)
T ss_pred CCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC---------------------CCeEEEE
Confidence 345544 6888888631100 0 1247888999999999999954 2345888
Q ss_pred eCCCcEEEEeeeeecC-----ccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCC----
Q 044170 176 FGSSNIWLDHLTLSQA-----HDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGL---- 246 (372)
Q Consensus 176 ~~s~nVwIDHcs~s~~-----~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~---- 246 (372)
.+++||.|+|.++... .||. |+ ..+++|+|++|.|...+-...++... .+|++.++.+..+.
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI~I~n~~c~~GhGisI 244 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNFLITKLACGPGHGVSI 244 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEEcCCCC-------ceEEEEEEEEECCceEEe
Confidence 8999999999999653 4764 76 36899999999999988888887542 27888887775311
Q ss_pred --CCcCc-ceeeeEEEEeceeeecc
Q 044170 247 --VQRMP-CVRFGFAHVVNNDYNQW 268 (372)
Q Consensus 247 --~~R~P-rvR~G~~hv~NN~~~~~ 268 (372)
..+.+ .-..-.+.|.|+.+.+-
T Consensus 245 GS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 245 GSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred ccccccCCCCcEEEEEEEeeEEeCC
Confidence 11222 11122577788888763
No 24
>PLN03010 polygalacturonase
Probab=97.17 E-value=0.024 Score=58.30 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=76.0
Q ss_pred EEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeec-----CccCccccccCCc
Q 044170 129 FMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQAST 203 (372)
Q Consensus 129 i~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~-----~~Dg~idv~~~s~ 203 (372)
|.+.+++||.|++|++++. ..=.|.+.+++||.|++.++.. -.||. |+ ..++
T Consensus 160 l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di-~~s~ 216 (409)
T PLN03010 160 LHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAPETSPNTDGI-DI-SYST 216 (409)
T ss_pred EEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCCCCCCCCCce-ee-eccc
Confidence 6778999999999999964 2245888899999999999875 35775 76 3589
Q ss_pred cEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCC----CCCcCcc-eeeeEEEEeceeeecc
Q 044170 204 AITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKG----LVQRMPC-VRFGFAHVVNNDYNQW 268 (372)
Q Consensus 204 ~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~----~~~R~Pr-vR~G~~hv~NN~~~~~ 268 (372)
+|+|++|.|...+...-+.+..+ ...|+...+..+++ ....... .-.-.++|.|+.+++-
T Consensus 217 nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 217 NINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQT 281 (409)
T ss_pred eEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCC
Confidence 99999999999988888865421 23444444433311 0011110 0112577888887763
No 25
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.17 E-value=0.028 Score=57.15 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=124.7
Q ss_pred hHHHhhcCCCeEEEEeeceEEEeCceEEeccCceEeecCCccEEec--CCcEEEe---------ccccEEEEceEEeeec
Q 044170 80 LRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIAN--GAGFMLQ---------FVQNVIIHGIHIHNIS 148 (372)
Q Consensus 80 Lr~av~~~~P~~IvF~~sg~I~l~~~l~I~snkTI~G~ga~~~I~~--G~gi~i~---------~a~NVIIRnl~i~~~~ 148 (372)
|-+++.+-. + |..+-+-+-++.++|.|++..+|+|+||.+.|.. +.+|.+. +-.+|.+.|++|...
T Consensus 57 le~~I~~ha-K-VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA-K-VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC-E-EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 566665532 2 4445555667778999999999999999988852 3345553 457999999999832
Q ss_pred CCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEecCCCCcc
Q 044170 149 PRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFT 228 (372)
Q Consensus 149 ~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~ 228 (372)
..--++-+...+++.|.-|+|....-=.|+... ...|.-|+|..-+|++. +.+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~-~~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIV-SRG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEee-cCC----
Confidence 124577788899999999999998877777653 66999999988777753 322
Q ss_pred CCCceeEEEEeeEEcCCCCCcCcceeeeEEEEeceeeecccceEeecCCCceEEEeccEEecCCC
Q 044170 229 EDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDN 293 (372)
Q Consensus 229 ~d~~~~vTi~~N~f~~~~~~R~PrvR~G~~hv~NN~~~~~~~yaig~~~~~~i~~egNyF~~~~~ 293 (372)
+.++++.++.|.+ +.==. +..|..++.+|.+.+-.-..+ .+.+-.+.+|.|..+..
T Consensus 187 ---~~~lsVk~C~Fek-C~igi--~s~G~~~i~hn~~~ec~Cf~l---~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVFEK-CVIGI--VSEGPARIRHNCASECGCFVL---MKGTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheeeeh-eEEEE--EecCCeEEecceecccceEEE---EcccEEEeccEEeCCCC
Confidence 3478889999973 43211 334788999999987654333 23344678999987765
No 26
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.14 E-value=0.0036 Score=62.22 Aligned_cols=108 Identities=27% Similarity=0.384 Sum_probs=75.7
Q ss_pred EEeccCceEeecCCc-----cE-----EecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEe
Q 044170 106 LIVQGKKTIDGRGAN-----VH-----IANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSI 175 (372)
Q Consensus 106 l~I~snkTI~G~ga~-----~~-----I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i 175 (372)
+.|.-.=||+|+|.. .. ...-..|.+.+++|+.|++|+|++.. .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEEE
Confidence 444444589999872 00 00012478888999999999999641 125888
Q ss_pred eCCCcEEEEeeeeecC-----ccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEc
Q 044170 176 FGSSNIWLDHLTLSQA-----HDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFD 243 (372)
Q Consensus 176 ~~s~nVwIDHcs~s~~-----~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 243 (372)
..++||+|+|.++... .||. |+. .+++|+|.+|.|...+-...+.+... +|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~~-~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DID-SSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EEE-SEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EEE-eeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 8999999999999753 5775 764 58999999999998888777765421 7888888886
No 27
>PLN02793 Probable polygalacturonase
Probab=97.09 E-value=0.027 Score=58.55 Aligned_cols=86 Identities=9% Similarity=0.197 Sum_probs=68.3
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeec-----CccCccccccCC
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQAS 202 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~-----~~Dg~idv~~~s 202 (372)
-|.+.+++||.|++|++++. ..=.|.+.+++||.|++.++.. -.||. |+ ..+
T Consensus 179 ~i~f~~~~nv~v~gitl~nS---------------------p~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-di-~~s 235 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDS---------------------QQMHIAFTNCRRVTISGLKVIAPATSPNTDGI-HI-SAS 235 (443)
T ss_pred EEEEEeeccEEEECeEEEcC---------------------CCeEEEEEccCcEEEEEEEEECCCCCCCCCcE-ee-ecc
Confidence 36777899999999999964 2235788899999999999975 35775 76 368
Q ss_pred ccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEc
Q 044170 203 TAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFD 243 (372)
Q Consensus 203 ~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 243 (372)
++|+|++|.|...+-...+.... .+|++.++.+.
T Consensus 236 ~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 236 RGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred ceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 99999999999988888886432 37888888775
No 28
>PLN02480 Probable pectinesterase
Probab=96.97 E-value=0.02 Score=57.66 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=79.5
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEe---ccCceEeecCCc-cEEec---------CCcEEEeccccEEEEc
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGKKTIDGRGAN-VHIAN---------GAGFMLQFVQNVIIHG 141 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I---~snkTI~G~ga~-~~I~~---------G~gi~i~~a~NVIIRn 141 (372)
||.+||.+ +..++++|-..|+- ++.|.| ++|+||.|.+.. ..|.. +.-|.| .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY--~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVY--REKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEE--EEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78888854 23356666666754 467888 467999999854 33431 122444 689999999
Q ss_pred eEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccC
Q 044170 142 IHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNH 215 (372)
Q Consensus 142 l~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h 215 (372)
|+|++..+.. .......-|+-+. .++++-+.+|.|.-..|=|++- ...--+.+|++..+
T Consensus 139 LTf~Nta~~g------------~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~ 198 (343)
T PLN02480 139 ISIRNDAPTG------------MAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGS 198 (343)
T ss_pred eEEEecCCCC------------CCCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEee
Confidence 9999874211 0012234566664 6899999999999999988763 33556677777753
No 29
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.88 E-value=0.061 Score=55.35 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=100.4
Q ss_pred eEEeccCceEeecCCcc------EEe-c----CCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeE
Q 044170 105 ELIVQGKKTIDGRGANV------HIA-N----GAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAV 173 (372)
Q Consensus 105 ~l~I~snkTI~G~ga~~------~I~-~----G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI 173 (372)
.|.|...=||+|+|..- ... + -.-|.+..++||.|++|+|++. ..=.|
T Consensus 123 ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS---------------------p~w~i 181 (404)
T PLN02188 123 GLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS---------------------KFFHI 181 (404)
T ss_pred eEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC---------------------CCeEE
Confidence 35555555788887620 000 0 1235677899999999999964 23468
Q ss_pred EeeCCCcEEEEeeeeec-----CccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCC--
Q 044170 174 SIFGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGL-- 246 (372)
Q Consensus 174 ~i~~s~nVwIDHcs~s~-----~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~-- 246 (372)
.+..++||.|++.++.. -.||. |+ ..+++|+|.+|.|..-+....++... .+|++.++.+....
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIaiksg~-------~nI~I~n~~c~~ghGi 252 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCISIGQGN-------SQVTITRIRCGPGHGI 252 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEEEccCC-------ccEEEEEEEEcCCCcE
Confidence 88899999999999976 35665 76 36899999999999988888886432 26888777764211
Q ss_pred ----CCcCcc-eeeeEEEEeceeeecccceEeec-------C--CCceEEEeccEEecCCC
Q 044170 247 ----VQRMPC-VRFGFAHVVNNDYNQWEMYAIGG-------L--KGPTILSQGNRFFASDN 293 (372)
Q Consensus 247 ----~~R~Pr-vR~G~~hv~NN~~~~~~~yaig~-------~--~~~~i~~egNyF~~~~~ 293 (372)
..+.+. -....+.|-|+.+++-. +++.. + .-..|.+++-.+++...
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~ 312 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTN 312 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccc
Confidence 011010 11235677788777632 23321 1 11356777777766544
No 30
>PLN02197 pectinesterase
Probab=96.88 E-value=0.021 Score=61.26 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=94.2
Q ss_pred Ccchh--hhhhccccCcccccCCCcCCCCCeE---EEEcCCCCCCCCCCCCc---chHHHhhc----CCCeEEEEeeceE
Q 044170 32 KENWA--ENRQALAGCALGFGIKATGGKGGKI---YEVTDPSDNDMENPKVG---TLRHAVIQ----KEPLWIIFAKDMN 99 (372)
Q Consensus 32 ~~~w~--~~r~~la~~a~GfG~~ttGG~gG~v---~~VT~~~d~~~~~~~pG---sLr~av~~----~~P~~IvF~~sg~ 99 (372)
.|.|- .+|+-|. +.+.|+++-||..+.+ ++|-- | |.| |+.+||.+ ...|+|||-+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 68887 4466664 3555667777765542 33321 2 455 78888854 3346777776786
Q ss_pred EEeCceEEec---cCceEeecCCccEEecC-------Cc-------EEEeccccEEEEceEEeeecCCCCCceecCCCCc
Q 044170 100 IKLQQELIVQ---GKKTIDGRGANVHIANG-------AG-------FMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHV 162 (372)
Q Consensus 100 I~l~~~l~I~---snkTI~G~ga~~~I~~G-------~g-------i~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~ 162 (372)
.++.+.|. +|+||.|.|..-+|.-+ .| -....+++++.|||.|++....
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~------------ 379 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGP------------ 379 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCCC------------
Confidence 44667774 58899999875333211 11 1112589999999999986311
Q ss_pred CCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 163 GKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 163 ~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
...-|+-+. .++..-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 380 -----~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 424 (588)
T PLN02197 380 -----MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVN---NGRQFYRNIVVSG 424 (588)
T ss_pred -----CCCceEEEEecCCcEEEEEeEEEecCcceEec---CCCEEEEeeEEEe
Confidence 122455554 5899999999999988877652 2234555565554
No 31
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.73 E-value=0.052 Score=52.26 Aligned_cols=188 Identities=18% Similarity=0.226 Sum_probs=108.1
Q ss_pred chHHHhhcCCCeEEEEeeceEEEeCc----eEEeccCceEeecCCc-----cE---------EecCCc-------EEEec
Q 044170 79 TLRHAVIQKEPLWIIFAKDMNIKLQQ----ELIVQGKKTIDGRGAN-----VH---------IANGAG-------FMLQF 133 (372)
Q Consensus 79 sLr~av~~~~P~~IvF~~sg~I~l~~----~l~I~snkTI~G~ga~-----~~---------I~~G~g-------i~i~~ 133 (372)
||.+|+.+-.|-.+|+=..|+-+-.. +|.|++.+||.|.... +. |. |.+ ++|..
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~-g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTIS-GGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEe-ccCccccceeEEEEe
Confidence 67788876555444443456654332 5888888888886431 12 22 222 45556
Q ss_pred cccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecC-ccCcccc----ccCCccEEEe
Q 044170 134 VQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQA-HDGLIDA----IQASTAITIS 208 (372)
Q Consensus 134 a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~-~Dg~idv----~~~s~~VTIS 208 (372)
+++..|+.++|++..+ ..+-+|.|.++ +.-|..|+|+.+ .+|.... ......++|+
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 7888888988886421 35668888776 888899999995 5554221 1234567788
Q ss_pred CcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCC-----cCcceeee-EEEEeceeeecccceEeecCC--Cce
Q 044170 209 NCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQ-----RMPCVRFG-FAHVVNNDYNQWEMYAIGGLK--GPT 280 (372)
Q Consensus 209 nn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~-----R~PrvR~G-~~hv~NN~~~~~~~yaig~~~--~~~ 280 (372)
.|.+.....+..+-.... . ..-.+-+|++..|... ..|.+-.+ ...+-||.|.+...|.+.... +-+
T Consensus 157 GN~~~~~~~Gi~i~~~~~----~-~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~ 231 (246)
T PF07602_consen 157 GNSIYFNKTGISISDNAA----P-VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQT 231 (246)
T ss_pred cceEEecCcCeEEEcccC----C-ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCcee
Confidence 877765433332221110 0 1124466777632110 11444321 234667888777777776532 346
Q ss_pred EEEeccEEecC
Q 044170 281 ILSQGNRFFAS 291 (372)
Q Consensus 281 i~~egNyF~~~ 291 (372)
+++.||....-
T Consensus 232 l~a~gN~ld~~ 242 (246)
T PF07602_consen 232 LYAVGNQLDHN 242 (246)
T ss_pred EEEeCCccCCC
Confidence 77888876543
No 32
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.022 Score=60.43 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=75.8
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccC--------cc--c
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDG--------LI--D 197 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg--------~i--d 197 (372)
++.+..++|+.++||+|..-. ....|+|.+..++||.|+-|.|+.+.|- +. +
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~------------------~~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~ 324 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANR------------------FDNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKK 324 (542)
T ss_pred EEeeecccCceecceEEECCC------------------CCCCCccccccceeEEEeccEEecCCceEEeecccCCcccc
Confidence 566678999999999998431 1267999999999999999999985442 11 2
Q ss_pred cccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccee
Q 044170 198 AIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR 254 (372)
Q Consensus 198 v~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR 254 (372)
....+.+|+|++|+|..-.-+..+|+.. ..+...|++-.|.|. + ..|.-|++
T Consensus 325 ~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~-~-~d~GLRik 376 (542)
T COG5434 325 GYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMD-N-TDRGLRIK 376 (542)
T ss_pred cccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeec-c-Ccceeeee
Confidence 2334678999999999645555555432 234678999999996 3 66666664
No 33
>smart00656 Amb_all Amb_all domain.
Probab=96.51 E-value=0.091 Score=48.46 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=82.3
Q ss_pred cCceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeee
Q 044170 110 GKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTL 188 (372)
Q Consensus 110 snkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~ 188 (372)
-|++|.+...... .++.+|.+.+++||+|.+..|....+.. .........+.+. ++.+|=|-.|.|
T Consensus 45 rnl~i~~~~~~~~-~~~D~i~~~~~~~VwIDHct~s~~~~~~------------~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 45 RNLTIHDPKPVYG-SDGDAISIDGSSNVWIDHVSLSGCTVTG------------FGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eCCEEECCccCCC-CCCCEEEEeCCCeEEEEccEeEcceecc------------CCCCCCCccEEECcccccEEEECceE
Confidence 4777776543211 1256899999999999999999642111 1111122344554 678888888888
Q ss_pred ecCccCccccccCC------ccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccee-eeEEEEe
Q 044170 189 SQAHDGLIDAIQAS------TAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR-FGFAHVV 261 (372)
Q Consensus 189 s~~~Dg~idv~~~s------~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR-~G~~hv~ 261 (372)
....-+.|--...+ -.||+-+|+|.+.. +..+.. +.-++-+.+|+|. +...-.--++ .+.+.+-
T Consensus 112 ~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~-----~R~P~~---r~g~~hv~NN~~~-n~~~~~~~~~~~~~v~~E 182 (190)
T smart00656 112 HNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLR-----QRAPRV---RFGYVHVYNNYYT-GWTSYAIGGRMGATILSE 182 (190)
T ss_pred ecCCEEEEEccCCCccccccceEEEECcEEcCcc-----cCCCcc---cCCEEEEEeeEEe-CcccEeEecCCCcEEEEE
Confidence 76544433322212 27999999998632 111111 1116889999997 5543333233 2579999
Q ss_pred ceeeec
Q 044170 262 NNDYNQ 267 (372)
Q Consensus 262 NN~~~~ 267 (372)
||||.+
T Consensus 183 ~N~F~~ 188 (190)
T smart00656 183 GNYFEA 188 (190)
T ss_pred CeEEEC
Confidence 999986
No 34
>PLN02176 putative pectinesterase
Probab=96.14 E-value=0.17 Score=50.87 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=77.8
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEe---c-----C-CcEEEeccccEEEEce
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIA---N-----G-AGFMLQFVQNVIIHGI 142 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~---~-----G-~gi~i~~a~NVIIRnl 142 (372)
|+.+||.+ +..+++||-..|+- .+.|.|. +|+||.|.|..-+|. . + +-+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 77888853 23356666667764 4667774 589999998763332 1 1 12333 6899999999
Q ss_pred EEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccC
Q 044170 143 HIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNH 215 (372)
Q Consensus 143 ~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h 215 (372)
+|++..+..+ ......+-|+-+. .++.+-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 130 T~~Nt~~~~~-----------~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG~ 189 (340)
T PLN02176 130 TFKNTYNIAS-----------NSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISGG 189 (340)
T ss_pred EEEeCCCccC-----------CCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEec
Confidence 9998643110 0001223455554 5799999999999988888763 33556677777654
No 35
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.76 E-value=0.03 Score=50.95 Aligned_cols=122 Identities=22% Similarity=0.279 Sum_probs=64.6
Q ss_pred cCceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCC-eEEeeC-CCcEEEEeee
Q 044170 110 GKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGD-AVSIFG-SSNIWLDHLT 187 (372)
Q Consensus 110 snkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~D-aI~i~~-s~nVwIDHcs 187 (372)
.|+||+|.+....=. ..++.+..++|+.|+|+++++... .|......+.+.. ...... ++.+.+ ..++++..|.
T Consensus 97 ~nl~i~~~~~~~~~~-~~~i~~~~~~~~~i~nv~~~~~~~--~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 97 RNLTIDGNGIDPNNN-NNGIRFNSSQNVSISNVRIENSGG--DGIYFNTGTDYRI-IGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEEETCGCE-SC-EEEEEETTEEEEEEEEEEEES-SS---SEEEECCEECEE-ECCEEEEEEEEESCEEEEEEECEE
T ss_pred EeeEEEcccccCCCC-ceEEEEEeCCeEEEEeEEEEccCc--cEEEEEccccCcE-eecccceeeeeccceeEEEECCcc
Confidence 358888886431100 247888789999999999997521 1211110000000 001111 344443 2334446666
Q ss_pred eecCccCccccccCCccEEEeCcEecc-CCceeEecCCCCccCCCceeEEEEeeEEcCCCC
Q 044170 188 LSQAHDGLIDAIQASTAITISNCHFSN-HDKAILLGASDTFTEDKKMQVTVAFNRFDKGLV 247 (372)
Q Consensus 188 ~s~~~Dg~idv~~~s~~VTISnn~f~~-h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~ 247 (372)
+..+.+| +..+.++++++||.|.. ...++.+-... .+++.+|.|. +|.
T Consensus 173 ~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~-~~~ 221 (225)
T PF12708_consen 173 FNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIE-NCD 221 (225)
T ss_dssp EESSSCS---EECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEE-SSS
T ss_pred ccCCCce---eEeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEE-CCc
Confidence 6667777 23344788888888876 44444332211 4777777776 553
No 36
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.73 E-value=0.16 Score=53.97 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=72.5
Q ss_pred chHHHhhc-----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEE-ec----CCcE-------EEeccccEE
Q 044170 79 TLRHAVIQ-----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHI-AN----GAGF-------MLQFVQNVI 138 (372)
Q Consensus 79 sLr~av~~-----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I-~~----G~gi-------~i~~a~NVI 138 (372)
|+.+||.+ ...++++|-+.|+- .+.|.|. +|+||.|.|..-+| +. +.|+ ....+++++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 67788863 22367777777874 4667773 68999999876443 31 1111 122689999
Q ss_pred EEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 139 IHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 139 IRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
.|||.|++.... ...-|+-+. .++.+.+.+|.|....|=|.+- +..--..+|++..
T Consensus 317 a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 373 (529)
T PLN02170 317 ARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTH---SKRQFYRETDITG 373 (529)
T ss_pred EEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcceeC---CCCEEEEeeEEcc
Confidence 999999986311 112344443 5789999999999887766542 2233445555553
No 37
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.35 Score=48.59 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=68.7
Q ss_pred EEeccCceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEe
Q 044170 106 LIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDH 185 (372)
Q Consensus 106 l~I~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDH 185 (372)
|.+..+.|-++.-.+--|....||.|.++.++.|..-+|.+... .+....+++|++.++..+-|--
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 55555555555533212222568999999999999999986542 1345678999999999999999
Q ss_pred eeeecCccCccccccCCccEEEeCcEecc
Q 044170 186 LTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 186 cs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
+.++...|+... ..|..-+++.|.|++
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999864 346677788887775
No 38
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.54 E-value=0.16 Score=54.09 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=75.7
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecC-----Cc--------EEEeccccEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANG-----AG--------FMLQFVQNVI 138 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G-----~g--------i~i~~a~NVI 138 (372)
|+.+||.+ ...++|||-..|+- .+.+.|. +|+||.|.|...+|..+ .| +.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 77778853 44577777777864 4667773 68999999976444322 11 333 589999
Q ss_pred EEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 139 IHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 139 IRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
.+||.|++..... ....-|+.+ .++++-+-+|.|....|=|.+- +..--..+|++..
T Consensus 321 a~nitf~Ntag~~---------------~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 377 (541)
T PLN02416 321 ARDITIENTAGPE---------------KHQAVALRV-NADLVALYRCTINGYQDTLYVH---SFRQFYRECDIYG 377 (541)
T ss_pred EEeeEEEECCCCC---------------CCceEEEEE-cCccEEEEcceEecccchhccC---CCceEEEeeEEee
Confidence 9999999863210 123344444 5799999999999988877652 3345566666654
No 39
>PLN02682 pectinesterase family protein
Probab=95.51 E-value=0.31 Score=49.62 Aligned_cols=127 Identities=19% Similarity=0.233 Sum_probs=79.0
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEe---ccCceEeecCCcc-EEec----------C--------CcEEEe
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGKKTIDGRGANV-HIAN----------G--------AGFMLQ 132 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I---~snkTI~G~ga~~-~I~~----------G--------~gi~i~ 132 (372)
|+.+||.+ ...+++||=..|+ .++.|.| ++|+||.|.|..- .|.. | +-+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 77788854 2235555555675 4566777 4689999998753 3320 1 01223
Q ss_pred ccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcE
Q 044170 133 FVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCH 211 (372)
Q Consensus 133 ~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~ 211 (372)
.+++++.+||+|++..+... . ...+.-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~---------~---g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPP---------P---GALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccCC---------C---CCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 68899999999998642110 0 01122344443 5899999999999999988763 3355677777
Q ss_pred eccCCceeEecCC
Q 044170 212 FSNHDKAILLGAS 224 (372)
Q Consensus 212 f~~h~k~~LiG~s 224 (372)
+..+-- .++|..
T Consensus 226 IeG~VD-FIFG~g 237 (369)
T PLN02682 226 IEGSVD-FIFGNG 237 (369)
T ss_pred Eccccc-EEecCc
Confidence 775422 235543
No 40
>PLN02432 putative pectinesterase
Probab=95.50 E-value=0.25 Score=48.84 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=76.9
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEe---ccCceEeecCCccEEe-c--------CCcEEEeccccEEEEce
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGKKTIDGRGANVHIA-N--------GAGFMLQFVQNVIIHGI 142 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I---~snkTI~G~ga~~~I~-~--------G~gi~i~~a~NVIIRnl 142 (372)
|+.+||.+ ...++++|-..|+ .++.|.| ++|+||.|.+..-++. . .+-+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~--Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGI--YREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 66777753 2224555555674 3566777 3689999998653332 1 112222 5899999999
Q ss_pred EEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEe
Q 044170 143 HIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILL 221 (372)
Q Consensus 143 ~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~Li 221 (372)
.|++..+ ..+-|+-+. .++.+-+.+|.|.-..|=|++- ...--+.+|++..+-- +++
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEeccc-EEe
Confidence 9997631 112355443 5899999999999999988752 3355667777775422 245
Q ss_pred cCC
Q 044170 222 GAS 224 (372)
Q Consensus 222 G~s 224 (372)
|..
T Consensus 160 G~g 162 (293)
T PLN02432 160 GNA 162 (293)
T ss_pred cCc
Confidence 643
No 41
>PLN02304 probable pectinesterase
Probab=95.35 E-value=0.38 Score=49.11 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=80.9
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEe---ccCceEeecCCccEE-ec--C---------CcEEEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGKKTIDGRGANVHI-AN--G---------AGFMLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I---~snkTI~G~ga~~~I-~~--G---------~gi~i~~a~NVII 139 (372)
|+.+||.+ +..+++||=..|+ ..+.|.| ++|+||.|+|..-++ .. . ..-....+++++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 78888854 2335666666675 4467888 378999999876333 21 0 0111125899999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCce
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKA 218 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~ 218 (372)
+||.|++..+... ......-|+-+. .++.+-+.+|.|.-..|=|.+- ...--+.+|++..+--
T Consensus 167 ~nITf~Nta~~~~------------~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~VD- 230 (379)
T PLN02304 167 KNISFMNVAPIPK------------PGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGSID- 230 (379)
T ss_pred EeeEEEecCCCCC------------CCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccccc-
Confidence 9999998653210 001223455554 5899999999999999998763 3345677787775422
Q ss_pred eEecCC
Q 044170 219 ILLGAS 224 (372)
Q Consensus 219 ~LiG~s 224 (372)
.++|..
T Consensus 231 FIFG~g 236 (379)
T PLN02304 231 FIFGDA 236 (379)
T ss_pred EEeccc
Confidence 245543
No 42
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=95.16 E-value=0.29 Score=52.29 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=72.9
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEec-------CCc-----EEEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIAN-------GAG-----FMLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~-------G~g-----i~i~~a~NVII 139 (372)
|+.+||.+ ...|+|||-..|+ .++.|.|. +|+||.|.|..-+|.- |.+ -....+++++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 67778853 3346777777787 45667774 6899999997644421 111 11125799999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
|||.|++.... ...-|+-+. .++.+-+.+|.|....|=|.+- +..--..+|++..
T Consensus 328 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~G 383 (548)
T PLN02301 328 QDIWFQNTAGP-----------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAH---SLRQFYRDSYITG 383 (548)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeeeeccccceec---CCcEEEEeeEEEe
Confidence 99999976311 122344443 5799999999999887766542 2234555555554
No 43
>PLN02773 pectinesterase
Probab=95.11 E-value=0.42 Score=47.74 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=72.5
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccE-Eec----------------C------Cc
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVH-IAN----------------G------AG 128 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~-I~~----------------G------~g 128 (372)
|+.+||.+ ...++++|=..|+ ..+.|.|. .|+||.|++..-+ |.. | +-
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 2235556655675 44667774 5799999986533 220 0 11
Q ss_pred EEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEE
Q 044170 129 FMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITI 207 (372)
Q Consensus 129 i~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTI 207 (372)
+.+ .++|++.+||+|++..+. ..+-|+-+. .++.+-+.+|.|.-..|=|++- ...--+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 223 589999999999986321 123344443 4799999999999888887652 234556
Q ss_pred eCcEeccC
Q 044170 208 SNCHFSNH 215 (372)
Q Consensus 208 Snn~f~~h 215 (372)
.+|++..+
T Consensus 156 ~~c~IeG~ 163 (317)
T PLN02773 156 RDCYIEGS 163 (317)
T ss_pred EeeEEeec
Confidence 66766653
No 44
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=95.01 E-value=0.31 Score=51.99 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=73.2
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEE-ecC----Cc-------EEEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHI-ANG----AG-------FMLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I-~~G----~g-------i~i~~a~NVII 139 (372)
|+.+||.+ +..++|||-..|+- .+.+.|. .|+||.|.|..-+| +.. .| .....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 67778853 33466777667754 4556664 68999999875333 311 11 12236899999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
+||.|++..... ....-|+.+ .++++-+.+|.|....|=|.+- +..--..+|++..
T Consensus 324 ~nit~~Ntag~~---------------~~QAVAl~v-~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~G 379 (537)
T PLN02506 324 RDITFRNTAGPQ---------------NHQAVALRV-DSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIYG 379 (537)
T ss_pred EeeEEEeCCCCC---------------CCceEEEEe-cCCcEEEEcceeecccccceec---CCceEEEeeEEec
Confidence 999999763110 112344444 5899999999999888877652 2344556666654
No 45
>PLN02634 probable pectinesterase
Probab=94.99 E-value=0.57 Score=47.56 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=74.9
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEec-----------C--------CcEEEe
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIAN-----------G--------AGFMLQ 132 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~-----------G--------~gi~i~ 132 (372)
|+.+||.+ ...++++|-..|+ ..+.|.|. +|+||.|.|...+|.- | +-+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 66777753 2224555555676 45667773 6899999987644430 1 11222
Q ss_pred ccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcE
Q 044170 133 FVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCH 211 (372)
Q Consensus 133 ~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~ 211 (372)
.+++++.+||+|++..+... . ....+-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~---g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------P---GMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------C---CCCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 57999999999998753210 0 01223444443 4788999999999999888753 3355666777
Q ss_pred eccC
Q 044170 212 FSNH 215 (372)
Q Consensus 212 f~~h 215 (372)
+..+
T Consensus 212 IeG~ 215 (359)
T PLN02634 212 IEGS 215 (359)
T ss_pred Eccc
Confidence 7654
No 46
>PLN02665 pectinesterase family protein
Probab=94.96 E-value=4.1 Score=41.56 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=73.2
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCc-cEEecC----------CcEEEeccccEEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGAN-VHIANG----------AGFMLQFVQNVIIH 140 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~-~~I~~G----------~gi~i~~a~NVIIR 140 (372)
|+.+||.+ ...++|+|=..|+- .+.|.|. +++||.|++.. ..|... ....+..+++++.+
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~a~~F~a~ 159 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFMAA 159 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEECCCeEEE
Confidence 77888854 23366777667754 4667774 67899999865 333211 11122368999999
Q ss_pred ceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 141 GIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 141 nl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
||.|++..+...+ .......-|+.+ .++.+-+.+|.|.-..|=|.+-. ..--+.+|++..
T Consensus 160 nitf~Nta~~~~~----------~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~~---gr~yf~~CyIeG 219 (366)
T PLN02665 160 NIIIKNSAPRPDG----------KRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDDK---GRHFFKDCYIEG 219 (366)
T ss_pred eeEEEeCCCCcCC----------CCCCcceEEEEE-cCCcEEEEcceeccccceeEeCC---CCEEEEeeEEee
Confidence 9999987542111 001123344444 47899999999998877776531 233445555543
No 47
>PLN02314 pectinesterase
Probab=94.91 E-value=0.36 Score=51.99 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=72.6
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecC-----Cc--------EEEeccccEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANG-----AG--------FMLQFVQNVI 138 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G-----~g--------i~i~~a~NVI 138 (372)
|+.+||.+ +..++|||-..|+- .+.+.|. .|+|+.|.|..-+|.-+ .| +. ..+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~-v~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA-AAGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE-EEcCCeE
Confidence 77788853 33467777777864 4567774 58899999875333212 11 12 2579999
Q ss_pred EEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 139 IHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 139 IRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
.|||.|++.... ...-|+-++ +++..-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 369 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~---~~rq~y~~C~I~G 425 (586)
T PLN02314 369 AKDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAH---SNRQFYRDCDITG 425 (586)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchheeC---CCCEEEEeeEEEe
Confidence 999999986311 123455554 6899999999999887766542 2234445555554
No 48
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=94.74 E-value=0.38 Score=44.64 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=70.4
Q ss_pred cCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccc------
Q 044170 125 NGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID------ 197 (372)
Q Consensus 125 ~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~id------ 197 (372)
++..|.|.+++||+|.|..|....... ........|.+. ++++|=|-+|-|......++-
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~-------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~ 140 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFEC-------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSN 140 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-G-------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTC
T ss_pred CCCeEEEEecccEEEeccEEecccccc-------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCCc
Confidence 367899999999999999999762110 001123346665 688888888888764322211
Q ss_pred cccCCccEEEeCcEeccCCcee-EecCCCCccCCCceeEEEEeeEEcCCCCCcCcceee-eEEEEeceee
Q 044170 198 AIQASTAITISNCHFSNHDKAI-LLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF-GFAHVVNNDY 265 (372)
Q Consensus 198 v~~~s~~VTISnn~f~~h~k~~-LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR~-G~~hv~NN~~ 265 (372)
.......||+-+|+|.++..=+ ++. .-++.+.+|+|. +..+..=.+|. +.+-+-||||
T Consensus 141 ~~~~~~~vT~hhN~f~~~~~R~P~~r---------~G~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 141 STDRGLRVTFHHNYFANTNSRNPRVR---------FGYVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GGGTTEEEEEES-EEEEEEE-TTEEC---------SCEEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred cccCCceEEEEeEEECchhhCCCccc---------ccEEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 1112269999999997632111 221 126889999997 56666666664 5788889986
No 49
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.71 E-value=0.43 Score=51.06 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=72.3
Q ss_pred chHHHhhc-----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecC------Cc--------EEEecccc
Q 044170 79 TLRHAVIQ-----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANG------AG--------FMLQFVQN 136 (372)
Q Consensus 79 sLr~av~~-----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G------~g--------i~i~~a~N 136 (372)
|+.+||.+ ...++|||-..|+- ++.|.|. .|+||+|.|..-+|.-+ .| +.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY--~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVY--EETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceE--EeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 67778743 13366777777864 4556663 68999999876333311 12 222 5799
Q ss_pred EEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 137 VIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 137 VIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
++.+||+|++... ....-|+-++ .++.+-+.+|.|....|=|..- +..--..+|++..
T Consensus 332 f~a~~it~~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~---~~rq~y~~C~I~G 390 (553)
T PLN02708 332 FMARDLTIQNTAG-----------------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAH---SLRQFYKSCRIQG 390 (553)
T ss_pred eEEEeeEEEcCCC-----------------CCCCceEEEEecCCcEEEEeeeeeeccccceeC---CCceEEEeeEEee
Confidence 9999999997631 1123455554 5899999999999887766542 2233445555553
No 50
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=94.67 E-value=0.4 Score=51.64 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=73.0
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccE-EecCC----cE-------EEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVH-IANGA----GF-------MLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~-I~~G~----gi-------~i~~a~NVII 139 (372)
|+.+||.+ ...++|||-+.|+-+-+ .|.|. +|+||.|.|..-+ |+.+. +. ....+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 67778854 23467777777875421 37774 5899999987643 43211 11 1125899999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
|||.|++..+. ...-|+-+. .++..-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 365 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~G 420 (587)
T PLN02484 365 RDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVH---SNRQFFRECDIYG 420 (587)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccC---CCcEEEEecEEEe
Confidence 99999986321 123455554 5899999999999888776552 2234455555554
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=94.50 E-value=0.69 Score=49.26 Aligned_cols=114 Identities=19% Similarity=0.169 Sum_probs=73.5
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCcc-EEec------CC-----cEEEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANV-HIAN------GA-----GFMLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~-~I~~------G~-----gi~i~~a~NVII 139 (372)
|+.+||.+ ...+++||-..|+-+ +.|.|. +|+||.|.|..- .|.. |. .-....+++++.
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F~a 309 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGFIA 309 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCEEE
Confidence 67778853 233566666667654 567774 588999998753 3321 11 111125799999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
+||.|++... ....-|+-+. .++.+-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 310 ~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~---~~Rqyy~~C~IeG 365 (530)
T PLN02933 310 KDISFVNYAG-----------------PAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVH---SAKQFYRECDIYG 365 (530)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEEeEEEecccccccC---CCceEEEeeEEec
Confidence 9999998631 1123455554 5899999999999988877653 2344566666664
No 52
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.28 E-value=0.45 Score=50.27 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=73.1
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecCC-----cE-E------EeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANGA-----GF-M------LQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G~-----gi-~------i~~a~NVII 139 (372)
|+.+||.+ +..+++||=+.|+- ++.|.|. +|+||.|.|..-+|.-+. |. + ...++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67778853 23356666666753 4667774 689999999864433111 10 1 115789999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
+||.|++... ...+-|+-+. .++..-+.+|.|....|=|.+- +..--..+|++..
T Consensus 289 ~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~---~~RqyyrdC~I~G 344 (509)
T PLN02488 289 IDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYPH---RDRQFYRECFITG 344 (509)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceeeC---CCCEEEEeeEEee
Confidence 9999997631 1123566665 6899999999999888777542 2334455555554
No 53
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=94.21 E-value=0.88 Score=48.90 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=64.8
Q ss_pred chHHHhhc-------CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccE-Eec------CC------cEEEeccc
Q 044170 79 TLRHAVIQ-------KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVH-IAN------GA------GFMLQFVQ 135 (372)
Q Consensus 79 sLr~av~~-------~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~-I~~------G~------gi~i~~a~ 135 (372)
|+.+||.+ ...+++|+-..|+- ++.|.|. .|+||.|.|..-+ |+. |. -+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 67778853 12256667667764 4667774 5889999987533 331 21 1222 579
Q ss_pred cEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccc
Q 044170 136 NVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 197 (372)
Q Consensus 136 NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~id 197 (372)
+++.+||.|++.... ...-|+-+. .++..-+.+|.|....|=|.+
T Consensus 341 ~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 341 NFVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred CeEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 999999999986311 123455554 689999999999887776544
No 54
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=94.13 E-value=0.8 Score=48.94 Aligned_cols=113 Identities=16% Similarity=0.229 Sum_probs=72.1
Q ss_pred chHHHhhc---CC----CeEEEEeeceEEEeCceEEec---cCceEeecCCccEE-ec------C------CcEEEeccc
Q 044170 79 TLRHAVIQ---KE----PLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHI-AN------G------AGFMLQFVQ 135 (372)
Q Consensus 79 sLr~av~~---~~----P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I-~~------G------~gi~i~~a~ 135 (372)
|+.+||.+ .. -|+|||-+.|+- ++.|.|. .|+||.|.|.+-+| +. | +-+. ..++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~-v~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFA-VSGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEE-EECC
Confidence 77778853 11 267777777864 4667773 68999999976433 31 1 1122 2579
Q ss_pred cEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 136 NVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 136 NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
++|.+||.|++... ....-|+-++ .++..-+.+|+|....|=|.+- +..--..+|++..
T Consensus 314 ~F~a~~it~~Ntag-----------------~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~---~~rq~y~~c~I~G 373 (538)
T PLN03043 314 RFVAVDVTFRNTAG-----------------PEKHQAVALRNNADLSTFYRCSFEGYQDTLYVH---SLRQFYRECDIYG 373 (538)
T ss_pred CEEEEeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEeeEEeccCcccccC---CCcEEEEeeEEee
Confidence 99999999998631 1123456554 5889999999999887766542 2233444555543
No 55
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.08 E-value=0.82 Score=48.62 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=71.9
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccE-Eec------CCc-----EEEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVH-IAN------GAG-----FMLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~-I~~------G~g-----i~i~~a~NVII 139 (372)
|+.+||.+ ...+++||-..|+- ++.|.|. +|+||.|.|..-+ |+. |.+ -....+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 67778853 22356666666754 4667774 5889999987533 321 110 11125899999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
+||.|++..+. ...-|+-+. .++..-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 298 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 353 (520)
T PLN02201 298 RDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTH---TMRQFYRECRITG 353 (520)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeC---CCCEEEEeeEEee
Confidence 99999986421 123455554 5799999999999888877652 2233445566554
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=93.86 E-value=0.82 Score=49.41 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=78.1
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecCC-----cE-------EEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANGA-----GF-------MLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G~-----gi-------~i~~a~NVII 139 (372)
|+.+||.+ ...+++||-..|+- ++.|.|. +|+||.|.|..-+|..+. |+ ....+++++.
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~a 376 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFMA 376 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCCEEE
Confidence 77788854 23366666667754 3567774 589999999764333121 11 1125899999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCce
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKA 218 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~ 218 (372)
+||.|++.... ...-|+-+. .++..-+.+|.|.-..|=|.+- +..--+.+|++...--
T Consensus 377 ~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~GtVD- 435 (596)
T PLN02745 377 KSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVITGTID- 435 (596)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEEeecc-
Confidence 99999986311 122344443 5899999999999988887653 3345666676665322
Q ss_pred eEecCC
Q 044170 219 ILLGAS 224 (372)
Q Consensus 219 ~LiG~s 224 (372)
.++|..
T Consensus 436 FIFG~a 441 (596)
T PLN02745 436 FIFGDA 441 (596)
T ss_pred EEecce
Confidence 345543
No 57
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=93.84 E-value=0.82 Score=49.12 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=71.8
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEec-------CC------cEEEeccccEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIAN-------GA------GFMLQFVQNVI 138 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~-------G~------gi~i~~a~NVI 138 (372)
|+.+||.+ +..++|||-..|+- .+.+.|. .|+||.|.|..-+|.- |. -+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 67777753 23356666667764 4567774 5889999987633321 11 1122 578999
Q ss_pred EEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 139 IHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 139 IRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
.|||.|++... ....-|+-+. .++..-+.+|.|.-..|=|..- +..--..+|++..
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~---~~rq~y~~C~I~G 405 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLYAH---AQRQFYRECNIYG 405 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhccC---CCceEEEeeEEec
Confidence 99999997631 1123455554 6899999999999888776542 2233455666654
No 58
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=93.81 E-value=0.62 Score=49.77 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=75.4
Q ss_pred chHHHhhc-C-----CCeEEEEeeceEEEeCceEEec---cCceEeecCCccE-EecCC----cE-------EEeccccE
Q 044170 79 TLRHAVIQ-K-----EPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVH-IANGA----GF-------MLQFVQNV 137 (372)
Q Consensus 79 sLr~av~~-~-----~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~-I~~G~----gi-------~i~~a~NV 137 (372)
|+.+||.+ + ..+++||=+.|+- ++.|.|. +|+|+.|.|..-+ |+.+. +. ....++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 78888853 2 2366666666764 4567774 6999999997633 33111 11 11258999
Q ss_pred EEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 138 IIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 138 IIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
+.|||.|++... ...+-|+-+. .++...+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 315 ~a~nitf~Ntag-----------------~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 372 (539)
T PLN02995 315 IAKGITFRNTAG-----------------PAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIYG 372 (539)
T ss_pred EEEeeEEEeCCC-----------------CCCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEee
Confidence 999999998531 1123455554 5899999999999999888753 2345666777765
No 59
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.79 E-value=0.62 Score=50.27 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=64.2
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecCC-----c-------EEEeccccEEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANGA-----G-------FMLQFVQNVII 139 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G~-----g-------i~i~~a~NVII 139 (372)
|+.+||.+ ...++|||-..|+- .+.+.|. .|+||.|.|..-+|.-+. | -....+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 67778853 23466777777753 4667774 588999998763333121 1 01125789999
Q ss_pred EceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCcc
Q 044170 140 HGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLI 196 (372)
Q Consensus 140 Rnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~i 196 (372)
|||.|++.... ...-|+-+. +++..-+-+|.|....|=|.
T Consensus 367 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy 407 (587)
T PLN02313 367 RDITFQNTAGP-----------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLY 407 (587)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeEecccchhc
Confidence 99999986311 122345444 58999999999988766554
No 60
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.68 E-value=0.77 Score=50.17 Aligned_cols=165 Identities=17% Similarity=0.214 Sum_probs=98.6
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecC-----Cc--------EEEeccccEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANG-----AG--------FMLQFVQNVI 138 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G-----~g--------i~i~~a~NVI 138 (372)
|+.+||.+ ...++|||-+.|+ ..+.|.|. .|+||.|.|..-+|.-+ .| +.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 77788854 2336666666675 34667775 47899999876444311 11 122 589999
Q ss_pred EEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCcc-----------------Ccccccc
Q 044170 139 IHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHD-----------------GLIDAIQ 200 (372)
Q Consensus 139 IRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~D-----------------g~idv~~ 200 (372)
.|||.|++... ....-|+-++ .++..-+.+|.|.-..| |.+|+.-
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999998632 1123455554 58999999999986554 5566555
Q ss_pred CCccEEEeCcEeccC-----CceeEe--cCCCCccCCCceeEEEEeeEEcCCCCCcC------------cceeeeEEEEe
Q 044170 201 ASTAITISNCHFSNH-----DKAILL--GASDTFTEDKKMQVTVAFNRFDKGLVQRM------------PCVRFGFAHVV 261 (372)
Q Consensus 201 ~s~~VTISnn~f~~h-----~k~~Li--G~sd~~~~d~~~~vTi~~N~f~~~~~~R~------------PrvR~G~~hv~ 261 (372)
|.-..-+++|.|.-- .+..+- |..+ .+....+.|+++.+. ....-. |.-.|..+-+.
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~---~~~~tGfvf~~C~i~-~~~~~~~~~~~~~~yLGRPW~~ysrvVf~ 479 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGRKD---PRESTGFVLQGCTIV-GEPDYLAVKETSKAYLGRPWKEYSRTIIM 479 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCCCC---CCCCceEEEEeeEEe-cCccccccccccceeeccCCCCCceEEEE
Confidence 666677788877531 111111 1111 122456788888876 332111 22235567777
Q ss_pred ceeeec
Q 044170 262 NNDYNQ 267 (372)
Q Consensus 262 NN~~~~ 267 (372)
|.++.+
T Consensus 480 ~t~l~~ 485 (670)
T PLN02217 480 NTFIPD 485 (670)
T ss_pred ecccCC
Confidence 776653
No 61
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=93.62 E-value=0.92 Score=44.86 Aligned_cols=123 Identities=16% Similarity=0.253 Sum_probs=70.2
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccEEecC-------------CcEEEeccccEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVHIANG-------------AGFMLQFVQNVI 138 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~I~~G-------------~gi~i~~a~NVI 138 (372)
|+.+||.+ ...+++||-..|+- ++.|.|. +++||.|.++.-++.-+ +-+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTY--REKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEE--E--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeE--ccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 67778863 23456667667764 4667775 58999999876333212 11233 589999
Q ss_pred EEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccCCce
Q 044170 139 IHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKA 218 (372)
Q Consensus 139 IRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~ 218 (372)
++||.|++.... .....-||.+ .++++.+.+|.|....|=|+.- ....-+.+|++..+-.
T Consensus 91 ~~nit~~Nt~g~---------------~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG~vD- 150 (298)
T PF01095_consen 91 AENITFENTAGP---------------SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEGNVD- 150 (298)
T ss_dssp EEEEEEEEHCSG---------------SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-
T ss_pred eeeeEEecCCCC---------------cccceeeeee-cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEecCc-
Confidence 999999985310 1123456766 4689999999999999987652 3456778888876421
Q ss_pred eEecCC
Q 044170 219 ILLGAS 224 (372)
Q Consensus 219 ~LiG~s 224 (372)
+++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 345644
No 62
>PLN02497 probable pectinesterase
Probab=93.60 E-value=1.6 Score=43.98 Aligned_cols=122 Identities=15% Similarity=0.191 Sum_probs=75.3
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCc-cEEe--c-----CCcEEEeccccEEEEceE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGAN-VHIA--N-----GAGFMLQFVQNVIIHGIH 143 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~-~~I~--~-----G~gi~i~~a~NVIIRnl~ 143 (372)
|+.+||.+ ...++++|-..|+ .++.|.|. +++||.|+|.. ..|. . +..-....+++++.+||+
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~a~~f~a~nlT 123 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKSIT 123 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEecCCeEEEccE
Confidence 66677743 2335555555674 45667773 68999999875 2232 1 111222368999999999
Q ss_pred EeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEeccC
Q 044170 144 IHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNH 215 (372)
Q Consensus 144 i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h 215 (372)
|++..+... .+ ......-|+-+. .++++-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 124 ~~Nt~~~~~---------~~-~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG~ 183 (331)
T PLN02497 124 FANSYNFPS---------KG-NKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQGA 183 (331)
T ss_pred EEeCCCCcc---------cc-CCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEec
Confidence 998642110 00 001123455554 5899999999999999988763 33556667777653
No 63
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.48 E-value=1.3 Score=47.63 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=72.1
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCCcc-EEecC----Cc-E-E------EeccccEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANV-HIANG----AG-F-M------LQFVQNVI 138 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~-~I~~G----~g-i-~------i~~a~NVI 138 (372)
|+.+||.+ ...+++||-..|+- ++.+.|. +|+||.|.|..- .|+.. .| + + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 77888854 23366666667754 4667774 689999998753 33311 01 1 1 12579999
Q ss_pred EEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 139 IHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 139 IRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
.|||.|++... ....-|+-+. .++..-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 351 a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 407 (572)
T PLN02990 351 AKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLYVH---SHRQFFRDCTVSG 407 (572)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhccC---CCcEEEEeeEEec
Confidence 99999998631 1123455554 5899999999999887766542 2233445555543
No 64
>PLN02916 pectinesterase family protein
Probab=93.40 E-value=1.2 Score=47.22 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=72.7
Q ss_pred chHHHhhc-------CCCeEEEEeeceEEEeCceEEec---cCceEeecCCccE-Eec------CCc-----EEEecccc
Q 044170 79 TLRHAVIQ-------KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGANVH-IAN------GAG-----FMLQFVQN 136 (372)
Q Consensus 79 sLr~av~~-------~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga~~~-I~~------G~g-----i~i~~a~N 136 (372)
|+.+||.+ ...+++||=..|+- ++.+.|. +|+||.|.|..-+ |+. |.+ -....+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 67778843 23467777767754 4667774 5889999987633 321 111 11125899
Q ss_pred EEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc
Q 044170 137 VIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN 214 (372)
Q Consensus 137 VIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~ 214 (372)
++.|||.|++..+. ...-|+-+. .++..-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 279 F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 337 (502)
T PLN02916 279 FWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH---SLRQFYRDCHIYG 337 (502)
T ss_pred EEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC---CCCEEEEecEEec
Confidence 99999999986321 122344443 5799999999999888877653 2234555666654
No 65
>PLN02671 pectinesterase
Probab=93.27 E-value=1.8 Score=44.07 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=74.3
Q ss_pred chHHHhhc----CCCeEEEEeeceEEEeCceEEec---cCceEeecCC---ccEEec----------CC--------cEE
Q 044170 79 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGA---NVHIAN----------GA--------GFM 130 (372)
Q Consensus 79 sLr~av~~----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga---~~~I~~----------G~--------gi~ 130 (372)
|+.+||.+ ...+++||=..|+ ..+.|.|. +++||.|.+. +..|.. |. -+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 67778753 2224555555675 45677783 6889999874 334441 10 122
Q ss_pred EeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCc
Q 044170 131 LQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNC 210 (372)
Q Consensus 131 i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn 210 (372)
..+++++.+||+|++..+...| ......-|+.+ .++++-+.+|.|.-..|=|++- ...--+.+|
T Consensus 151 -v~a~~F~a~nitfeNt~~~~~g-----------~~~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C 214 (359)
T PLN02671 151 -IESDYFCATGITFENTVVAEPG-----------GQGMQAVALRI-SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQC 214 (359)
T ss_pred -EECCceEEEeeEEEcCCCCCCC-----------CCCccEEEEEE-cCccEEEEcceEeccccccEeC---CCcEEEEec
Confidence 2579999999999986321111 01122344444 4799999999999999998763 234566777
Q ss_pred EeccC
Q 044170 211 HFSNH 215 (372)
Q Consensus 211 ~f~~h 215 (372)
++..+
T Consensus 215 yIeG~ 219 (359)
T PLN02671 215 YIQGS 219 (359)
T ss_pred EEEEe
Confidence 77754
No 66
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=91.53 E-value=5.4 Score=41.42 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=73.9
Q ss_pred chHHHhhc-----CCCeEEEEeeceEEEeCceEEec---cCceEeecCC---ccEEecC---------------------
Q 044170 79 TLRHAVIQ-----KEPLWIIFAKDMNIKLQQELIVQ---GKKTIDGRGA---NVHIANG--------------------- 126 (372)
Q Consensus 79 sLr~av~~-----~~P~~IvF~~sg~I~l~~~l~I~---snkTI~G~ga---~~~I~~G--------------------- 126 (372)
|+.+||.+ ...+++||=..|+- ++.|.|. +|+||.|.|. ...|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY--~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTY--QGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCcee--EEEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 67778863 22356666666754 4667773 6899999764 2444311
Q ss_pred -----------------Cc-------EEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEee-CCCcE
Q 044170 127 -----------------AG-------FMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNI 181 (372)
Q Consensus 127 -----------------~g-------i~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~-~s~nV 181 (372)
.. .....+++++.+||+|++..+... .....-|+-+. .++.+
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra 240 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWSQNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKV 240 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEEECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcE
Confidence 00 011257999999999998642100 01123345443 58999
Q ss_pred EEEeeeeecCccCccccccC---------CccEEEeCcEecc
Q 044170 182 WLDHLTLSQAHDGLIDAIQA---------STAITISNCHFSN 214 (372)
Q Consensus 182 wIDHcs~s~~~Dg~idv~~~---------s~~VTISnn~f~~ 214 (372)
.+.+|.|.-..|=|+.-..+ ...--+.+|++..
T Consensus 241 ~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 241 QIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred EEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 99999999988888752111 1245566677765
No 67
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=91.14 E-value=1 Score=48.07 Aligned_cols=134 Identities=21% Similarity=0.290 Sum_probs=86.5
Q ss_pred CCCeEEEEeeceEEEeCc------e---E-Eec-cCceEeecCCc-cEEecCCcEEEeccccEEEEceEEeeecCCCCCc
Q 044170 87 KEPLWIIFAKDMNIKLQQ------E---L-IVQ-GKKTIDGRGAN-VHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGM 154 (372)
Q Consensus 87 ~~P~~IvF~~sg~I~l~~------~---l-~I~-snkTI~G~ga~-~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~ 154 (372)
..|+.|.|.....+.+.. + + .+. +|+||.+..-+ -+..+-.||.+..++||.|.+.+|..
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 578889888666555432 1 1 112 46666655311 11101348888899999999999973
Q ss_pred eecCCCCcCCCCCCCCCeEEee------------CCCcEEEEeeeeecCccCcccc---ccCCccEEEeCcEeccCCcee
Q 044170 155 IRDSVDHVGKRGQSDGDAVSIF------------GSSNIWLDHLTLSQAHDGLIDA---IQASTAITISNCHFSNHDKAI 219 (372)
Q Consensus 155 i~~~~~~~~~~~~~~~DaI~i~------------~s~nVwIDHcs~s~~~Dg~idv---~~~s~~VTISnn~f~~h~k~~ 219 (372)
..|.|.+. -+++|||-||.|+.++-+++.- ..+-.+|++-+|.|.+-+.+.
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 23455443 2578999999999988777653 345679999999999977666
Q ss_pred EecCCCCccCCCceeEEEEeeEEc
Q 044170 220 LLGASDTFTEDKKMQVTVAFNRFD 243 (372)
Q Consensus 220 LiG~sd~~~~d~~~~vTi~~N~f~ 243 (372)
-|...+.-. .+..+|+|+-+...
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~~ 396 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKMR 396 (542)
T ss_pred eeeeecccc-eeEEEEEEeccccc
Confidence 555443221 23456666666554
No 68
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=91.03 E-value=1.5 Score=40.62 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=59.2
Q ss_pred ccEEEeCcEeccCCc--eeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccee--ee-------EEEEeceeeecccce
Q 044170 203 TAITISNCHFSNHDK--AILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR--FG-------FAHVVNNDYNQWEMY 271 (372)
Q Consensus 203 ~~VTISnn~f~~h~k--~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR--~G-------~~hv~NN~~~~~~~y 271 (372)
++|-|=||.+.+-.- .-|+|...+++.+....|.+|||.|.. ...+|... .| ..-+.||+|......
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 467888888887543 347788766666667799999999983 55556544 33 247899999875433
Q ss_pred Eee----------cCCCceEEEeccEEecCC
Q 044170 272 AIG----------GLKGPTILSQGNRFFASD 292 (372)
Q Consensus 272 aig----------~~~~~~i~~egNyF~~~~ 292 (372)
|+. .+.+-...+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 332 113345678888887754
No 69
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=90.79 E-value=1.9 Score=42.81 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCeEEeeCCCcEEEEeeeeecCc-----cCccccccCCccEEEeCcEeccCCceeEecCCCCcc--CCCceeEEEEeeEE
Q 044170 170 GDAVSIFGSSNIWLDHLTLSQAH-----DGLIDAIQASTAITISNCHFSNHDKAILLGASDTFT--EDKKMQVTVAFNRF 242 (372)
Q Consensus 170 ~DaI~i~~s~nVwIDHcs~s~~~-----Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~--~d~~~~vTi~~N~f 242 (372)
+=++.|..+.||+|-..+|.... +..|.+..++.+|=|-+|-|..|....---|.|... ......||+.+|+|
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 45688888999999999999866 345667678889999999998865431111223221 12356899999999
Q ss_pred cCCCC--------CcCcceeee--EEEEeceeeecccceEeecCCCceEEEeccEEecCC
Q 044170 243 DKGLV--------QRMPCVRFG--FAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASD 292 (372)
Q Consensus 243 ~~~~~--------~R~PrvR~G--~~hv~NN~~~~~~~yaig~~~~~~i~~egNyF~~~~ 292 (372)
+.+-. .-++. -| .+-+-+|+|.|-.+.+=..+ -..+-+-+|||+.-+
T Consensus 196 hdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~~~ 252 (345)
T COG3866 196 HDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEGNP 252 (345)
T ss_pred ecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceE-eeEEEEeccccccCc
Confidence 74221 11222 12 35667899987543221111 134677899998444
No 70
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=87.79 E-value=4.1 Score=42.31 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCCCeEEeeC------CCcEEEEeeeeecCc--cCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEe
Q 044170 168 SDGDAVSIFG------SSNIWLDHLTLSQAH--DGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAF 239 (372)
Q Consensus 168 ~~~DaI~i~~------s~nVwIDHcs~s~~~--Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~ 239 (372)
.++-+|.|-. .++..|.|+-|..|. -|.|+++ |..-||++|.|.+..-.+-+=|.. .-|+..
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~g 251 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEG 251 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEec
Confidence 3455566521 356666666666543 4456654 556677788887766555554443 568888
Q ss_pred eEEcCCCCCc--Ccceee-eE-EEEeceeeecccce----------EeecCC------CceEEEeccEEecCC
Q 044170 240 NRFDKGLVQR--MPCVRF-GF-AHVVNNDYNQWEMY----------AIGGLK------GPTILSQGNRFFASD 292 (372)
Q Consensus 240 N~f~~~~~~R--~PrvR~-G~-~hv~NN~~~~~~~y----------aig~~~------~~~i~~egNyF~~~~ 292 (372)
|+|- +...+ .+=+|. |. -.|+|||+++-..+ ++-.+. -..+.+++|-|++..
T Consensus 252 N~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 252 NVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp -EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred cEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 9987 44433 355552 44 34689999875322 211111 124788999998876
No 71
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=76.31 E-value=44 Score=34.06 Aligned_cols=42 Identities=17% Similarity=0.440 Sum_probs=26.3
Q ss_pred ceEEeccCceEeecCCccEEec-CCc--EEEeccccEEEEceEEeee
Q 044170 104 QELIVQGKKTIDGRGANVHIAN-GAG--FMLQFVQNVIIHGIHIHNI 147 (372)
Q Consensus 104 ~~l~I~snkTI~G~ga~~~I~~-G~g--i~i~~a~NVIIRnl~i~~~ 147 (372)
..++|..-+|+-|.- .+++.+ |.| +++ .+-++|||.|+.|+.
T Consensus 45 g~~vInr~l~l~ge~-ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~s 89 (408)
T COG3420 45 GNFVINRALTLRGEN-GAVLDGGGKGSYVTV-AAPDVIVEGLTVRGS 89 (408)
T ss_pred ccEEEccceeecccc-ccEEecCCcccEEEE-eCCCceeeeEEEecC
Confidence 456666666666662 234432 233 344 689999999999953
No 72
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=64.73 E-value=1e+02 Score=30.36 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=43.6
Q ss_pred CeEEeeCCCcEEEEeeeeec--CccCcccc------------ccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEE
Q 044170 171 DAVSIFGSSNIWLDHLTLSQ--AHDGLIDA------------IQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVT 236 (372)
Q Consensus 171 DaI~i~~s~nVwIDHcs~s~--~~Dg~idv------------~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vT 236 (372)
|.+-+ .+.||-|||..+.. +.|+.=++ --.+.||||.++.+..- -+|- ...++|
T Consensus 130 dYf~m-~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~GE----YLgW-------~SkNlt 197 (277)
T PF12541_consen 130 DYFFM-NSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVINGE----YLGW-------NSKNLT 197 (277)
T ss_pred eEeee-eccceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceEeee----EEEE-------EcCCeE
Confidence 43433 36788888877653 22321110 01244555555555421 1231 123789
Q ss_pred EEeeEEcCCCCCcCcceeeeEEEEeceeeec
Q 044170 237 VAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQ 267 (372)
Q Consensus 237 i~~N~f~~~~~~R~PrvR~G~~hv~NN~~~~ 267 (372)
+.++... +-.|+|=--.+.+.|.-+.+
T Consensus 198 liNC~I~----g~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 198 LINCTIE----GTQPLCYCDNLVLENCTMID 224 (277)
T ss_pred EEEeEEe----ccCccEeecceEEeCcEeec
Confidence 9998774 33477755567777877764
No 73
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=62.47 E-value=17 Score=34.55 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=27.9
Q ss_pred CCCeEEeeCCC-cEEEEeeeeecCccCccccccCCccEEEeCcEec
Q 044170 169 DGDAVSIFGSS-NIWLDHLTLSQAHDGLIDAIQASTAITISNCHFS 213 (372)
Q Consensus 169 ~~DaI~i~~s~-nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~ 213 (372)
..||+++.+.. .+.|.-..+..+.|..|-.. +.-.++|++-...
T Consensus 95 cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~nF~a~ 139 (215)
T PF03211_consen 95 CEDAATFKGDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKNFYAE 139 (215)
T ss_dssp SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEE
T ss_pred ceeeeEEcCCCceEEEeCCcccCCCccEEEec-CceeEEEEeEEEc
Confidence 45777777665 77777777777777776653 3445677663333
No 74
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=57.89 E-value=1.6e+02 Score=27.48 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCCcEEEEeeeeecCc-cCcccc-----ccCCccEEEeCcEeccCCceeEec--CCCCcc-CCCceeEEEEeeEEcCCCC
Q 044170 177 GSSNIWLDHLTLSQAH-DGLIDA-----IQASTAITISNCHFSNHDKAILLG--ASDTFT-EDKKMQVTVAFNRFDKGLV 247 (372)
Q Consensus 177 ~s~nVwIDHcs~s~~~-Dg~idv-----~~~s~~VTISnn~f~~h~k~~LiG--~sd~~~-~d~~~~vTi~~N~f~~~~~ 247 (372)
.+++|+|.|+.|..+. ...++. ..+-.+..|-||.|..-+.+.+.- .....+ .+....+++.+|.+. ++.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eee
Confidence 3679999999999853 333332 234457799999999754433321 111112 233566788888887 777
Q ss_pred Cc
Q 044170 248 QR 249 (372)
Q Consensus 248 ~R 249 (372)
+|
T Consensus 111 ~r 112 (198)
T PF08480_consen 111 KR 112 (198)
T ss_pred ec
Confidence 66
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=49.68 E-value=40 Score=22.98 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=31.3
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeec
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ 190 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~ 190 (372)
||.+..+++..|++=+|.+ ..|+|.+..+++--|..+.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEc
Confidence 5777777777788777773 3469999988888888887764
No 76
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=49.25 E-value=88 Score=30.29 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=53.4
Q ss_pred EEeccCceEeecCCcc-EEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeC------C
Q 044170 106 LIVQGKKTIDGRGANV-HIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFG------S 178 (372)
Q Consensus 106 l~I~snkTI~G~ga~~-~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~------s 178 (372)
|...++.+|.|.+-.- .+..|.||.|..+ +..|+|-+|.++. .++|.+.+ .
T Consensus 93 I~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i 150 (246)
T PF07602_consen 93 IILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGI 150 (246)
T ss_pred EEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcc
Confidence 3345667777763210 1112668999655 9999999999642 24454433 3
Q ss_pred CcEEEEeeeeecCccCccc-cccCCccEEEeCcEeccCCceeE
Q 044170 179 SNIWLDHLTLSQAHDGLID-AIQASTAITISNCHFSNHDKAIL 220 (372)
Q Consensus 179 ~nVwIDHcs~s~~~Dg~id-v~~~s~~VTISnn~f~~h~k~~L 220 (372)
.++.|.-.++....-|..- .......-+|.||+|++...++.
T Consensus 151 ~~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 151 NGNVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred cceEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeE
Confidence 4455666666665555411 11122234789999998655543
No 77
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=49.04 E-value=31 Score=34.42 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=32.3
Q ss_pred eccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeec
Q 044170 132 QFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ 190 (372)
Q Consensus 132 ~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~ 190 (372)
.+.++.||||++-+++.|- |.....-+.-.+.|+|++|..||..++..
T Consensus 265 engkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvn 312 (464)
T PRK10123 265 ENGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMIN 312 (464)
T ss_pred cCCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEecccccc
Confidence 3567888888888877542 22223345556777899999998875544
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=47.00 E-value=28 Score=23.79 Aligned_cols=39 Identities=31% Similarity=0.193 Sum_probs=20.8
Q ss_pred EEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEec
Q 044170 173 VSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFS 213 (372)
Q Consensus 173 I~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~ 213 (372)
|.+..+++..|..+.++...||. .+. .+.+-+|..|.|.
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~GI-~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYGI-YLT-DSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCEE-EEE-eCCCCEeECCEEE
Confidence 45555555556666666666643 222 2445555555554
No 79
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=42.57 E-value=4.4 Score=29.34 Aligned_cols=20 Identities=40% Similarity=0.914 Sum_probs=13.4
Q ss_pred ccceeccCcchhhhhhcccc
Q 044170 25 IDNCWRCKENWAENRQALAG 44 (372)
Q Consensus 25 id~cwr~~~~w~~~r~~la~ 44 (372)
-|+|.||...|+.-|-+-|.
T Consensus 20 yd~ci~cqgkwagkrgkcaa 39 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAA 39 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHH
T ss_pred hhHHheecceeccccCcchh
Confidence 58999999999988765443
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=39.94 E-value=1.8e+02 Score=30.04 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=53.4
Q ss_pred cEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCC---CCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCcc
Q 044170 128 GFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRG---QSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTA 204 (372)
Q Consensus 128 gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~---~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~ 204 (372)
++.+....+++|++-.|.+.. |.-.+......-|. ..-.-||.-.+...+=|-||.|..+.=|.+. ...
T Consensus 138 g~~f~~~t~~~~hgC~F~gf~----g~cl~~~~~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~ 209 (386)
T PF01696_consen 138 GVVFHANTNTLFHGCSFFGFH----GTCLESWAGGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGP 209 (386)
T ss_pred eeEEEecceEEEEeeEEecCc----ceeEEEcCCcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCC
Confidence 566667889999999888653 11111100000000 0011223333455666777777777766633 236
Q ss_pred EEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEc
Q 044170 205 ITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFD 243 (372)
Q Consensus 205 VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 243 (372)
.+|++|-|.+-.-..|++. .-++.||.|-
T Consensus 210 ~~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 210 ARIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred eEEecceecccceEEEEcc----------cEEEeccEEe
Confidence 6777888877555555544 2456677665
No 81
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=38.33 E-value=2.2e+02 Score=28.69 Aligned_cols=63 Identities=10% Similarity=0.198 Sum_probs=34.4
Q ss_pred cccCCCcCCCCCeEEEEcCCCCCCCCCCCCcchHHHhhcCCCeEEEEeeceEE-EeCceEEeccCceEeecCC
Q 044170 48 GFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNI-KLQQELIVQGKKTIDGRGA 119 (372)
Q Consensus 48 GfG~~ttGG~gG~v~~VT~~~d~~~~~~~pGsLr~av~~~~P~~IvF~~sg~I-~l~~~l~I~snkTI~G~ga 119 (372)
=|.+..+| +..|-+.+.+.+ ..+-|+|.|.+... ++++-.+-+- ++...|.|.+.||+.=+|+
T Consensus 24 p~~ra~~~---~~~vni~dy~~~----dwiasfkqaf~e~q--tvvvpagl~cenint~ifip~gktl~v~g~ 87 (464)
T PRK10123 24 PFARALPA---RQSVNINDYNPH----DWIASFKQAFSEGQ--TVVVPAGLVCDNINTGIFIPPGKTLHILGS 87 (464)
T ss_pred HhhhhcCC---CceeehhhcCcc----cHHHHHHHHhccCc--EEEecCccEecccccceEeCCCCeEEEEEE
Confidence 34555553 355555555433 25567888776543 3333333222 2345677888888765554
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=35.38 E-value=1.9e+02 Score=27.50 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=33.1
Q ss_pred CCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc-CCceeE
Q 044170 169 DGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN-HDKAIL 220 (372)
Q Consensus 169 ~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~-h~k~~L 220 (372)
..|+|...+ +..|+.+-+.+..+..+.++..+..++|...-+.+ .+|++-
T Consensus 74 ~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 74 QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp -TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEE
T ss_pred CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEE
Confidence 568999988 66777777777677777877655577877776664 455543
No 83
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=32.73 E-value=2.4e+02 Score=30.54 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEeCcEecc-CC-ceeEecCCCCccCC-CceeEEEEeeEEc
Q 044170 167 QSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSN-HD-KAILLGASDTFTED-KKMQVTVAFNRFD 243 (372)
Q Consensus 167 ~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~-h~-k~~LiG~sd~~~~d-~~~~vTi~~N~f~ 243 (372)
....|+|.+...+.| ++| |-...|-.|-+++ ++++|+++.+.. |+ -++-+|.......+ ...++.+.||.+.
T Consensus 370 ~~qtDGi~ly~nS~i--~dc-F~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~ 444 (582)
T PF03718_consen 370 YFQTDGIELYPNSTI--RDC-FIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWI 444 (582)
T ss_dssp CTT----B--TT-EE--EEE-EEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---S
T ss_pred EeccCCccccCCCee--eee-EEEecCchhheee--cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeee
Confidence 467799999866655 455 5555555555444 689999998875 33 34556755433221 2456778888654
Q ss_pred CCCCCcCcc
Q 044170 244 KGLVQRMPC 252 (372)
Q Consensus 244 ~~~~~R~Pr 252 (372)
....+-|.
T Consensus 445 -~~~~~~n~ 452 (582)
T PF03718_consen 445 -WHNNYVNT 452 (582)
T ss_dssp -SGGCTTT-
T ss_pred -cccCCCCc
Confidence 23444443
No 84
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=30.94 E-value=1.7e+02 Score=31.32 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=42.3
Q ss_pred EEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeecCccCccccccCCccEEEe
Q 044170 129 FMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITIS 208 (372)
Q Consensus 129 i~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~idv~~~s~~VTIS 208 (372)
+.+ .+++++.|||.|++..... ....-|+.+ .++++-+.+|.|.-..|=|.+- +..--..
T Consensus 265 ~~v-~~~~F~a~nitf~Ntag~~---------------~~QAvAl~v-~~D~~~fy~c~~~G~QDTLy~~---~~rqyy~ 324 (497)
T PLN02698 265 FTI-TGDGFIARDIGFKNAAGPK---------------GEQAIALSI-TSDHSVLYRCSIAGYQDTLYAA---ALRQFYR 324 (497)
T ss_pred EEE-ECCCeEEEeeEEEECCCCC---------------CCceEEEEe-cCCcEEEEcceeecccchheeC---CCcEEEE
Confidence 444 6899999999999863110 112334444 5899999999999887776542 2233444
Q ss_pred CcEecc
Q 044170 209 NCHFSN 214 (372)
Q Consensus 209 nn~f~~ 214 (372)
+|++..
T Consensus 325 ~C~I~G 330 (497)
T PLN02698 325 ECDIYG 330 (497)
T ss_pred eeEEEe
Confidence 555553
No 85
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=27.87 E-value=58 Score=34.30 Aligned_cols=55 Identities=31% Similarity=0.506 Sum_probs=38.5
Q ss_pred EEeeceE---EEeCceEEeccCceEeecCCccEEec-CCcEEEeccccEEEEceEEeeecCC
Q 044170 93 IFAKDMN---IKLQQELIVQGKKTIDGRGANVHIAN-GAGFMLQFVQNVIIHGIHIHNISPR 150 (372)
Q Consensus 93 vF~~sg~---I~l~~~l~I~snkTI~G~ga~~~I~~-G~gi~i~~a~NVIIRnl~i~~~~~~ 150 (372)
+||-+|. |+-.+.-.++-||--+|++.++.|.+ |+||.- +|-|+||--|++..|.
T Consensus 458 IFDNaMagVwIKTds~PtlrRNKI~dgRdgGicifngGkGlle---~neif~Nalit~S~ps 516 (625)
T KOG1777|consen 458 IFDNAMAGVWIKTDSNPTLRRNKIYDGRDGGICIFNGGKGLLE---HNEIFRNALITDSAPS 516 (625)
T ss_pred chhhhhcceEEecCCCcceeecceecCCCCcEEEecCCceeee---chhhhhccccccCChh
Confidence 4665553 44445556678999999988888875 567765 7888888877665543
No 86
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=25.88 E-value=2.8e+02 Score=24.21 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=42.4
Q ss_pred cccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEeeCCCcEEEEeeeeec---CccCccccccCCccE-EEeC
Q 044170 134 VQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ---AHDGLIDAIQASTAI-TISN 209 (372)
Q Consensus 134 a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i~~s~nVwIDHcs~s~---~~Dg~idv~~~s~~V-TISn 209 (372)
..++-|||..+..++-... .+.--.-...+-|.+.|......+|--|.-++ +..|.||+..+...| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~------~~kd~eis~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRD------GNKDDEISPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccC------CCcCCEeCccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 3478889998886543211 11111112445577777767777888787755 567888887655555 5544
Done!