BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044171
(813 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 221/696 (31%), Positives = 326/696 (46%), Gaps = 87/696 (12%)
Query: 120 TMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKG 179
T + +FLG P+ V P E +V+G +DTGI PE PSF F + K+KG
Sbjct: 1 TTRSWDFLGFPLTV-PRRSQVE---SNIVVGVLDTGIWPESPSFDDEGF--SPPPPKWKG 54
Query: 180 KCTTGNRFPSTACNSKIVGAQ-YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGN 238
C T N F CN KI+GA+ Y I+ GD N RD +GHG+HTASTAAG
Sbjct: 55 TCETSNNF---RCNRKIIGARSYHIGRPISPGDVNGPRD------TNGHGTHTASTAAGG 105
Query: 239 HRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVG 298
+ G G A G P ARIA YK + G IISLSVG
Sbjct: 106 LVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVG 165
Query: 299 PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDR 358
A P F++A+ + A + G+L +AGN +AAS DR
Sbjct: 166 -GANPR--HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDR 222
Query: 359 KYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHR--NVSTGIFSLESCQYPELF 416
K+ +++ NG SF G+ + T YYPL + D+ + + ST F + P L
Sbjct: 223 KFVTQVQIGNGQSFQGVSIN--TFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNL- 279
Query: 417 IPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMAL 476
++GK+++C SF + K ++ A +L +D++ +
Sbjct: 280 ----LKGKIVVCEASFGPH----------EFFKSLDGAAGVLMTSNTRDYAD------SY 319
Query: 477 DVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYS 536
+P +L+ DLL + R+ A +F + I + APVV S+S
Sbjct: 320 PLPSSVLD----PNDLLATLR-YIYSIRSPGATIFKSTT--------ILNASAPVVVSFS 366
Query: 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHI 596
SRGP+ T DV+KP+I PG I AAW + + F ++SGTSM+ PHI
Sbjct: 367 SRGPN-----RATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHI 421
Query: 597 AGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDF 656
G+A +K +P WSPAAI SA+MT+A SP+ A+ +P E F +
Sbjct: 422 TGIATYVKTYNPTWSPAAIKSALMTTA-------SPMNAR---FNPQAE--------FAY 463
Query: 657 GAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTG--YGCPTENQGWCSDL 714
G+G +NP +A+ PGL+++A+ +YV+FLC G + VRR+TG C + N G DL
Sbjct: 464 GSGHVNPLKAVRPGLVYDANESDYVKFLCG-QGYNTQAVRRITGDYSACTSGNTGRVWDL 522
Query: 715 NTPSITIS---NLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASR 771
N PS +S + ++ R + +V+ TY + P G+ +SV+P V GL R
Sbjct: 523 NYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDR 582
Query: 772 ELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAV 807
+ L S + + A ++ + H +R PI +
Sbjct: 583 K-SFTLTVRGSIKGFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 219/706 (31%), Positives = 328/706 (46%), Gaps = 86/706 (12%)
Query: 120 TMHTPEFLGI--PVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISK- 176
T HT +FL + G+WP G G+ V++ +D+GI PE SF G I K
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG----LGQDVIVAVLDSGIWPESASFQDD---GMPEIPKR 53
Query: 177 FKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAA 236
+KG C G +F ++ CN K++GA YF + +A D S D DGHG+H AS A
Sbjct: 54 WKGICKPGTQFNASMCNRKLIGANYFNKGILA-NDPTVNITMNSARDTDGHGTHCASITA 112
Query: 237 GNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLS 296
GN V G+ G A G+AP AR+AVYK + G + +IS+S
Sbjct: 113 GNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISIS 172
Query: 297 VGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASIT 356
G +P + +A+ + A GVLV +AGN +A+ T
Sbjct: 173 YGYRFIP----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228
Query: 357 DRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELF 416
DR + T+ L NG G L P R + + V + +L C EL
Sbjct: 229 DRTFAGTLTLGNGLKIRGWSLFP---ARAF---VRDSPVIYNK------TLSDCSSEELL 276
Query: 417 IPAL-VRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMA 475
++IC + DF +D I T A +++AA FI P F+
Sbjct: 277 SQVENPENTIVICDDNGDF-SDQMRIITRA----RLKAAIFISE-------DPGVFRSAT 324
Query: 476 LDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASY 535
PG+++N + ++ Y +K+ + LD + APVVA+
Sbjct: 325 FPNPGVVVNKKEGKQ-VINY-----VKNSVTPTATITFQETYLDTK------PAPVVAAS 372
Query: 536 SSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSP----SSEGDPNLKGRNFALLSGTSM 591
S+RGP + KP+I+APG I AA+ P +S G L ++ L SGTSM
Sbjct: 373 SARGPS-----RSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSM 427
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
A PH AG+AA++K HP+WSP+AI SAMMT+A+ D++ PI D + + A
Sbjct: 428 AAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKA---------A 478
Query: 652 TPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDY---VRRVTGYGCPTENQ 708
TP D GAG ++P RA+DPGL+++A Q+YV LC++ ++ + R + C +
Sbjct: 479 TPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPS- 537
Query: 709 GWCSDLNTPS-ITISNLVGS-----RKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQ- 761
+DLN PS I + ++ G+ +K R V NV TY +K P +SVSPQ
Sbjct: 538 ---ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQI 594
Query: 762 -VFKIRGLASRELKIVLKATNSTRAYSFGAMV-LQGNNNHIIRIPI 805
VFK + + + ++ + G++ ++ N NH +R PI
Sbjct: 595 LVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPI 640
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 10/96 (10%)
Query: 531 VVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAW-SPSSEGDPNLKGRNFALLSGT 589
V+ +SSRGP +N L KP ++APG+ I AA S +S G P + GT
Sbjct: 308 VITDFSSRGPTADNRL-------KPEVVAPGNWIIAARASGTSMGQP--INDYYTAAPGT 358
Query: 590 SMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEV 625
+MATPH+AG+AAL+ Q HP W+P + +A++ +A++
Sbjct: 359 AMATPHVAGIAALLLQAHPSWTPDKVKTALIETADI 394
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYK 266
I + DF + + +P+D +GHG+H AS AAG + G GMAPGA++ K
Sbjct: 162 IGWVDFVNGK--TTPYDDNGHGTHVASIAAG-------TGAASNGKYKGMAPGAKLVGIK 212
Query: 267 ALYTFGG-----YMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMELLFAT 321
L G + +I+LS+G S G ++L + A
Sbjct: 213 VLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDG----TDSLSQAVNNAW 268
Query: 322 KAGVLVVQAAGN 333
AG++VV AAGN
Sbjct: 269 DAGLVVVVAAGN 280
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SIW+ L G + SGT MA
Sbjct: 175 ASFSSVGPELD-------------VMAPGVSIWS----------TLPGNKYGAKSGTXMA 211
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 212 SPHVAGAAALILSKHPNWTNTQVRSSL 238
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 12/81 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I APGSSI ++W S+ +SGTSMA+PH+AGVAAL +P SPA +
Sbjct: 198 DIYAPGSSITSSWYTSNSA--------TNTISGTSMASPHVAGVAALYLDENPNLSPAQV 249
Query: 616 TSAMMTSA---EVTD-HSGSP 632
T+ + T A +VTD +GSP
Sbjct: 250 TNLLKTRATADKVTDAKTGSP 270
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 23/91 (25%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
A +SS GP+++ +MAPG SI + L G + LSGTSMA
Sbjct: 178 APFSSVGPELD-------------VMAPGVSICS----------TLPGGKYGALSGTSMA 214
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
+PH+AG AALI +HP W+ + S++ +A
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIXS----------TLPGNKYGAYSGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIXS----------TLPGNKYGAYSGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGTSMA
Sbjct: 178 ASFSSVGPELD-------------VMAPGVSICS----------TLPGNKYGAKSGTSMA 214
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSICS----------TLPGNKYGAKSGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGTSMA
Sbjct: 178 ASFSSVGPELD-------------VMAPGVSICS----------TLPGNKYGAKSGTSMA 214
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSICS----------TLPGNKYGAKSGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQS----------TLPGNKYGAKSGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
++ APG+SI +AW S L G TSMATPH+AGVAAL +++P +PA++
Sbjct: 196 DLFAPGASIPSAWYTSDTATQTLNG--------TSMATPHVAGVAALYLEQNPSATPASV 247
Query: 616 TSAMMTSAEVTDHSG 630
SA++ A SG
Sbjct: 248 ASAILNGATTGRLSG 262
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GTSMATPH+AGVAAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGVAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 23/90 (25%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQS----------TLPGNKYGAYNGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTS 622
+PH+AG AALI +HP W+ + S++ +
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 23/90 (25%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQST----------LPGNKYGAYNGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTS 622
+PH+AG AALI +HP W+ + S++ +
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 23/91 (25%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
A +SS GP+++ +MAPG SI + L G + LSGT+MA
Sbjct: 178 APFSSVGPELD-------------VMAPGVSICS----------TLPGGKYGALSGTAMA 214
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
+PH+AG AALI +HP W+ + S++ +A
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQST----------LPGNKYGAYNGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQST----------LPGNKYGAYNGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GTSMA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQST----------LPGNKYGAYNGTSMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGT MA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQS----------TLPGNKYGAYSGTXMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGT MA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQS----------TLPGNKYGAYSGTXMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGT MA
Sbjct: 178 ASFSSVGPELD-------------VMAPGVSICS----------TLPGNKYGAKSGTXMA 214
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGT MA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQS----------TLPGNKYGAKSGTXMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGT+MA
Sbjct: 178 ASFSSVGPELD-------------VMAPGVSIVS----------TLPGNKYGAKSGTAMA 214
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + SGT+MA
Sbjct: 178 ASFSSVGPELD-------------VMAPGVSIVS----------TLPGNKYGAKSGTAMA 214
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GTSMATPH+AG AAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GTSMATPH+AG AAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GTSMATPH+AG AAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GTSMATPH+AG AAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 220 SPFDADGHGSHTAST-AAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMXX 277
S D +GHG+H A T AA N+ + V+ G+AP A + K L G G +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGADGRGAISS 104
Query: 278 XXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGN 333
+ +LS+G PS P+A L E + AT GVLVV A+GN
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGS---PS-PSATL---EQAVNSATSRGVLVVAASGN 153
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 580 GRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
G +A L+GTSMATPH+AG AAL+KQ++P WS I + + +A
Sbjct: 205 GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
++MAPG SI L G + +GTSMATPH+AG AALI +HP W+ A +
Sbjct: 197 DVMAPGVSI----------QSTLPGGTYGAYNGTSMATPHVAGAAALILSKHPTWTNAQV 246
Query: 616 TSAMMTSA 623
+ ++A
Sbjct: 247 RDRLESTA 254
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GT MA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQST----------LPGNKYGAYNGTXMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GT MA
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQST----------LPGNKYGAYNGTXMA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 532 VASYSSRG--PDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGT 589
VA YSSRG + ++Q D+ I APGSS+++ W + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTWYNGG----------YNTISGT 249
Query: 590 SMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSG--SPILAQDYS 639
SMATPH++G+AA I +P S + S + A+ D G + DY+
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYA 301
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 70/196 (35%), Gaps = 57/196 (29%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G+ I +DTG+N HP ++ + F G T N
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNNV----EQCKDFTGATTPINN----------------- 63
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
S D +GHG+H A TA + G + G+AP A +
Sbjct: 64 ----------------SCTDRNGHGTHVAGTALAD-------GGSDQAGIYGVAPDADLW 100
Query: 264 VYKALYTFG-GYMXXXX-----XXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMEL 317
YK L G GY IIS+S+G SA S ++ +N
Sbjct: 101 AYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN------ 154
Query: 318 LFATKAGVLVVQAAGN 333
+A GVL+V AAGN
Sbjct: 155 -YAYSKGVLIVAAAGN 169
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GT MATPH+AG AAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 220 SPFDADGHGSHTAST-AAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMXX 277
S D +GHG+H A T AA ++ + V+ G+AP A + K L G G +
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISS 104
Query: 278 XXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGN 333
+ +LS+G PS P+A L E + AT GVLVV A+GN
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGS---PS-PSATL---EQAVNSATSRGVLVVAASGN 153
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GT MATPH+AG AAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 580 GRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
G +A L+GT MATPH+AG AAL+KQ++P WS I + + +A
Sbjct: 205 GSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GT MATPH+AG AAL+KQ++P WS I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 241 RNHLKNTA 248
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 220 SPFDADGHGSHTAST-AAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMXX 277
S D +GHG+H A T AA ++ + V+ G+AP A + K L G G +
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISS 104
Query: 278 XXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGN 333
+ +LS+G PS P+A L E + AT GVLVV A+GN
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGS---PS-PSATL---EQAVNSATSRGVLVVAASGN 153
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 23/87 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+SS GP+++ +MAPG SI + L G + +GTS A
Sbjct: 187 ASFSSVGPELD-------------VMAPGVSIQST----------LPGNKYGAYNGTSXA 223
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAM 619
+PH+AG AALI +HP W+ + S++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
++MAPG SI L G + +GT MATPH+AG AALI +HP W+ A +
Sbjct: 197 DVMAPGVSI----------QSTLPGGTYGAYNGTXMATPHVAGAAALILSKHPTWTNAQV 246
Query: 616 TSAMMTSA 623
+ ++A
Sbjct: 247 RDRLESTA 254
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 532 VASYSSRG--PDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGT 589
VA YSSRG + ++Q D+ I APGSS+++ W + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTWYNGG----------YNTISGT 249
Query: 590 SMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSG--SPILAQDYS 639
MATPH++G+AA I +P S + S + A+ D G + DY+
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYA 301
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 70/196 (35%), Gaps = 57/196 (29%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G+ I +DTG+N HP ++ + F G T N
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNNV----EQCKDFTGATTPINN----------------- 63
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
S D +GHG+H A TA + G + G+AP A +
Sbjct: 64 ----------------SCTDRNGHGTHVAGTALAD-------GGSDQAGIYGVAPDADLW 100
Query: 264 VYKALYTFG-GYMXXXX-----XXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMEL 317
YK L G GY IIS+S+G SA S ++ +N
Sbjct: 101 AYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN------ 154
Query: 318 LFATKAGVLVVQAAGN 333
+A GVL+V AAGN
Sbjct: 155 -YAYSKGVLIVAAAGN 169
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
++MAPG SI L G + +GT MATPH+AG AALI +HP W+ A +
Sbjct: 197 DVMAPGVSI----------QSTLPGGTYGAYNGTCMATPHVAGAAALILSKHPTWTNAQV 246
Query: 616 TSAMMTSA 623
+ ++A
Sbjct: 247 RDRLESTA 254
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 532 VASYSSRGPD--VNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGT 589
VA +SSRG + ++Q DV I APG+++++ W +A +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDV---EISAPGAAVYSTWFDGG----------YATISGT 248
Query: 590 SMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTD 627
SMA+PH AG+AA I + P S + + T A V D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G+ I +DTG+N HP +++ + + K T G F +C + + A
Sbjct: 25 GAGINIAVLDTGVNTNHPDLSNN-------VEQCK-DFTVGTNFTDNSCTDRQGHGTHVA 76
Query: 204 RAAIAYG 210
+A+A G
Sbjct: 77 GSALANG 83
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG+ +++ + ++ +A L+GTSMA+PH+AG AALI +HP S + +
Sbjct: 197 VMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 247 NRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG+ +++ + ++ +A L+GTSMA+PH+AG AALI +HP S + +
Sbjct: 197 VMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 247 NRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG+ +++ + ++ +A L+GTSMA+PH+AG AALI +HP S + +
Sbjct: 198 VMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAAALILSKHPNLSASQVR 247
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 248 NRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG+ +++ + ++ +A L+GTSMA+PH+AG AALI +HP S + +
Sbjct: 198 VMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAAALILSKHPNLSASQVR 247
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 248 NRLSSTA 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG+ +++ + ++ +A L+GTSMA+PH+AG AALI +HP S + +
Sbjct: 197 VMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 247 NRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG+ +++ + ++ +A L+GTSMA+PH+AG AALI +HP S + +
Sbjct: 197 VMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 247 NRLSSTA 253
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG+ +++ + ++ +A L+GT MA+PH+AG AALI +HP S + +
Sbjct: 197 VMAPGAGVYSTYPTNT----------YATLNGTXMASPHVAGAAALILSKHPNLSASQVR 246
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 247 NRLSSTA 253
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
++ APGS I +AW + +SGTSMATPH+AGVAAL Q + +P +
Sbjct: 196 DLFAPGSQIKSAWYDGG----------YKTISGTSMATPHVAGVAALYLQENNGLTPLQL 245
Query: 616 TSAMMTSA---EVTDHSGS 631
T + + A +V+D G+
Sbjct: 246 TGLLNSRASENKVSDTRGT 264
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRG 170
A F G GV IDTG+N H F S G
Sbjct: 24 ANFDGFGVTAYVIDTGVNNNHEEFGGRSVSG 54
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+MAPG S+++ + PS + L+GTSMA+PH+AG AALI ++P S + +
Sbjct: 197 VMAPGVSVYSTY-PS---------NTYTSLNGTSMASPHVAGAAALILSKYPTLSASQVR 246
Query: 617 SAMMTSA 623
+ + ++A
Sbjct: 247 NRLSSTA 253
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 71/207 (34%), Gaps = 60/207 (28%)
Query: 128 GIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRF 187
GIP+ + + G V +G IDTGI H
Sbjct: 7 GIPLIKADKVQAQGYKGANVKVGIIDTGIASSHTDL------------------------ 42
Query: 188 PSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSG 247
K+VG F +N+ D +GHG+H A T A ++
Sbjct: 43 -------KVVGGASFVSGE----SYNT--------DGNGHGTHVAGTVAALDNTTGVL-- 81
Query: 248 FNYGYASGMAPGARIAVYKALYTFG-GYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGP 306
G+AP + K L + G G +I++S+G PSG
Sbjct: 82 -------GVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGG---PSGS 131
Query: 307 AAFLNALEMELLFATKAGVLVVQAAGN 333
A A++ A +G++VV AAGN
Sbjct: 132 TALKQAVDK----AYASGIVVVAAAGN 154
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 577 NLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAE 624
N +++ +GTSMATPH++GVA L+ HP+ S + + +A+ +A+
Sbjct: 356 NQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATAD 403
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 18/101 (17%)
Query: 532 VASYSSRGPDVNNALLQTAD-VLKPNIMAPGSSIWAAWS---PSSEGDPNLKGRNFALLS 587
VA +SSRGP T D +KP++MAPG+ I +A S P S N + +A +
Sbjct: 202 VAQFSSRGP--------TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSK-YAYMG 252
Query: 588 GTSMATPHIAGVAA-----LIKQRHPKWSPAAITSAMMTSA 623
GTSMATP +AG A +K R P+ + +A++ A
Sbjct: 253 GTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 10/51 (19%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQR 606
++ APGSSI++ + S+ +A LSGTSMATPH+AGVA L+ +
Sbjct: 201 DVAAPGSSIYSTYPTST----------YASLSGTSMATPHVAGVAGLLASQ 241
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 64/186 (34%), Gaps = 57/186 (30%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G I +DTG+ HP A K+VG F
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAG-----------------------------KVVGGWDFV 59
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
D +ST P + +GHG+H A AA V+ + G A G AP A I
Sbjct: 60 -------DNDST-----PQNGNGHGTHCAGIAA-------AVTNNSTGIA-GTAPKASIL 99
Query: 264 VYKALYTFG-GYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMELLFATK 322
+ L G G +ISLS+G + SG L+ + +A
Sbjct: 100 AVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSG-------LQQAVNYAWN 152
Query: 323 AGVLVV 328
G +VV
Sbjct: 153 KGSVVV 158
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 10/51 (19%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQR 606
++ APGS I++ + S+ +A LSGTSMATPH+AGVA L+ +
Sbjct: 201 DVAAPGSWIYSTYPTST----------YASLSGTSMATPHVAGVAGLLASQ 241
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 64/186 (34%), Gaps = 57/186 (30%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G I +DTG+ HP A K+VG F
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAG-----------------------------KVVGGWDFV 59
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
D +ST P + +GHG+H A AA V+ + G A G AP A I
Sbjct: 60 -------DNDST-----PQNGNGHGTHCAGIAA-------AVTNNSTGIA-GTAPKASIL 99
Query: 264 VYKALYTFG-GYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMELLFATK 322
+ L G G +ISLS+G + SG L+ + +A
Sbjct: 100 AVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSG-------LQQAVNYAWN 152
Query: 323 AGVLVV 328
G +VV
Sbjct: 153 KGSVVV 158
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 525 YHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWA--------AWSPSSEGDP 576
Y+G VA +SSR V+ + APG +I + + +E P
Sbjct: 321 YYGGTFRVAGFSSRSDGVS-------------VGAPGVTILSTVPGEDSIGYEGHNENVP 367
Query: 577 NLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
G + GTSMA PH+ GV A++ Q+ P P I + +A
Sbjct: 368 ATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I APG+SI + W + GR +SGTSMATPHIAG+AA +
Sbjct: 201 DIFAPGTSITSTW---------IGGRT-NTISGTSMATPHIAGLAAYL 238
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 553 LKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612
+KP+I APG I ++ + +A LSGTSM+ P +AG+ L+++++ P
Sbjct: 389 IKPDIAAPGQDILSS----------VANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYP 438
Query: 613 AAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARA 666
MT +E D + +++ + + E + +P GAG ++ +A
Sbjct: 439 D------MTPSERLDLAKKVLMSS--ATALYDEDEKAYFSPRQQGAGAVDAKKA 484
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 578 LKGRNFALLSGTSMATPHIAGVAALIKQR 606
+ G +A +SGTSMA+PH+AG+AAL+ +
Sbjct: 214 ITGNRYAYMSGTSMASPHVAGLAALLASQ 242
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 216 RDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GY 274
DY P D + HG+H A AA + +GMAP RI +AL G G
Sbjct: 62 NDY-DPMDLNNHGTHVAGIAAAETNNATGI--------AGMAPNTRILAVRALDRNGSGT 112
Query: 275 MXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGN 333
+ +I+LS+G LE + +A G +VV AAGN
Sbjct: 113 LSDIADAIIYAADSGAEVINLSLGCD-------CHTTTLENAVNYAWNKGSVVVAAAGN 164
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 18/101 (17%)
Query: 532 VASYSSRGPDVNNALLQTAD-VLKPNIMAPGSSIWAAWS---PSSEGDPNLKGRNFALLS 587
VA +SSRGP T D +KP++MAPG+ I +A S P S N + +A
Sbjct: 202 VAQFSSRGP--------TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSK-YAYXG 252
Query: 588 GTSMATPHIAGVAA-----LIKQRHPKWSPAAITSAMMTSA 623
GTS ATP +AG A +K R P+ + +A++ A
Sbjct: 253 GTSXATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 553 LKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612
+KP+I APG I ++ + +A LSGTS + P +AG+ L+++++ P
Sbjct: 380 IKPDIAAPGQDILSS----------VANNKYAKLSGTSXSAPLVAGIXGLLQKQYETQYP 429
Query: 613 AAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARA 666
S + A+ S + L E + +P GAG ++ +A
Sbjct: 430 DXTPSERLDLAKKVLXSSATALYD--------EDEKAYFSPRQQGAGAVDAKKA 475
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I PG+SI + W G + +SGTSMATPH+AG+AA +
Sbjct: 200 DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLAAYL 237
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I PG+SI + W G + +SGTSMATPH+AG+AA +
Sbjct: 200 DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLAAYL 237
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
V +++SR P ++ T + APG +I + P L +GTS
Sbjct: 419 VYTWTSRDPCIDGGQGVT-------VCAPGGAIASV--------PQFTXSKSQLXNGTSX 463
Query: 592 ATPHIAGVAAL----IKQRHPKWSPAAITSAMMTSA 623
A PH+AG AL +KQ++ ++SP +I A+ +A
Sbjct: 464 AAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA 499
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 220 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 269
Query: 610 WSP 612
P
Sbjct: 270 ILP 272
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 583 FALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTD 627
++ ++GTSMATPH++GVAAL+ S A + +T AE+ D
Sbjct: 269 YSFMAGTSMATPHVSGVAALVI------SAANSVNKNLTPAELKD 307
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 78/204 (38%), Gaps = 38/204 (18%)
Query: 142 FSGEGVVIGFIDTGI----NPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIV 197
F+G+ VV+ +DTGI + + F N IS G + F
Sbjct: 29 FTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQIS-LDGDGRDADPFDE-------- 79
Query: 198 GAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAG--NHRVPVIVSGFNYGYASG 255
G + A Y D R D+ HGSH A T A N+R+ V +G
Sbjct: 80 GDWFDNWACGGYPDPRKERS-----DSSWHGSHVAGTIAAVTNNRIGV----------AG 124
Query: 256 MAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAV------PSGPAAF 309
+A GA++ +AL GGY I + P+ V G ++
Sbjct: 125 VAYGAKVVPVRALGRSGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSY 184
Query: 310 LNALEMELLFATKAGVLVVQAAGN 333
NA M + AT+ G LVV AAGN
Sbjct: 185 -NAQTM-IDRATRLGALVVVAAGN 206
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 583 FALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTD 627
++ ++GTSMATPH++GVAAL+ S A + +T AE+ D
Sbjct: 269 YSFMAGTSMATPHVSGVAALVI------SAANSVNKNLTPAELKD 307
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 78/204 (38%), Gaps = 38/204 (18%)
Query: 142 FSGEGVVIGFIDTGI----NPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIV 197
F+G+ VV+ +DTGI + + F N IS G + F
Sbjct: 29 FTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQIS-LDGDGRDADPFDE-------- 79
Query: 198 GAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAG--NHRVPVIVSGFNYGYASG 255
G + A Y D R D+ HGSH A T A N+R+ V +G
Sbjct: 80 GDWFDNWACGGYPDPRKERS-----DSSWHGSHVAGTIAAVTNNRIGV----------AG 124
Query: 256 MAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAV------PSGPAAF 309
+A GA++ +AL GGY I + P+ V G ++
Sbjct: 125 VAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSY 184
Query: 310 LNALEMELLFATKAGVLVVQAAGN 333
NA M + AT+ G LVV AAGN
Sbjct: 185 -NAQTM-IDRATRLGALVVVAAGN 206
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 218 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 267
Query: 610 WSP 612
P
Sbjct: 268 ILP 270
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 583 FALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTD 627
++ ++GTSMATPH++GVAAL+ S A + +T AE+ D
Sbjct: 269 YSFMAGTSMATPHVSGVAALVI------SAANSVNKNLTPAELKD 307
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 79/209 (37%), Gaps = 48/209 (22%)
Query: 142 FSGEGVVIGFIDTGI----NPEHPSFASHSFRGNQSIS-----KFKGKCTTGNRFPSTAC 192
F+G+ VV+ +DTGI + + F N IS + G+ F + AC
Sbjct: 29 FTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWAC 88
Query: 193 NSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAG--NHRVPVIVSGFNY 250
+ D R D+ HGSH A T A N+R+ V
Sbjct: 89 GGRP--------------DPRKERS-----DSSWHGSHVAGTIAAVTNNRIGV------- 122
Query: 251 GYASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAV------PS 304
+G+A GA++ +AL GGY I + P+ V
Sbjct: 123 ---AGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSD 179
Query: 305 GPAAFLNALEMELLFATKAGVLVVQAAGN 333
G ++ NA M + AT+ G LVV AAGN
Sbjct: 180 GQCSY-NAQTM-IDRATRLGALVVVAAGN 206
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 347
Query: 610 WSP 612
P
Sbjct: 348 ILP 350
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 347
Query: 610 WSP 612
P
Sbjct: 348 ILP 350
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 347
Query: 610 WSP 612
P
Sbjct: 348 ILP 350
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 347
Query: 610 WSP 612
P
Sbjct: 348 ILP 350
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 295 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 344
Query: 610 WSP 612
P
Sbjct: 345 ILP 347
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT MATPH++GV ALI+ Q++ K
Sbjct: 218 QPEVSAPGVDILSTYPDDS----------YETLMGTCMATPHVSGVVALIQAAYYQKYGK 267
Query: 610 WSP 612
P
Sbjct: 268 ILP 270
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I APGS+I + W G +SGTSMATPHI G+ A +
Sbjct: 203 DIFAPGSNILSTW----------IGGTTNTISGTSMATPHIVGLGAYL 240
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT MATPH++GV ALI+ Q++ K
Sbjct: 218 QPEVSAPGVDILSTYPDDS----------YETLMGTXMATPHVSGVVALIQAAYYQKYGK 267
Query: 610 WSP 612
P
Sbjct: 268 ILP 270
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 229 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 278
Query: 610 WSP 612
P
Sbjct: 279 ILP 281
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I PG+ I + W G + +SGTSMATPH+AG+AA +
Sbjct: 200 DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYL 237
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+P + APG I + + S + L GT+MATPH++GV ALI+ Q++ K
Sbjct: 229 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQAAYYQKYGK 278
Query: 610 WSP 612
P
Sbjct: 279 ILP 281
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
K I+APG I A PN LSGTS ATP ++GVAAL+ +R K
Sbjct: 198 KQGILAPGKDILGA-------KPN---GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEK 247
Query: 610 WSPAAITSAMMTSA 623
P + +A++ SA
Sbjct: 248 PDPQKVKNALLASA 261
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 536 SSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPH 595
+ RGP V+NA L + + N P S + W EG+P+L N ALL + T H
Sbjct: 209 ACRGPVVDNAAL----LARLNAGQPLSVVLDVW----EGEPDL---NVALLEAVDIGTSH 257
Query: 596 IAG 598
IAG
Sbjct: 258 IAG 260
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I+APG I + + S +A LSGT+MA PH+AG ALI
Sbjct: 226 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 263
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 46/154 (29%)
Query: 115 KMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSI 174
+++K++ + +G+ + P + A G G +IG IDTG +HP A G
Sbjct: 11 QVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLT 70
Query: 175 SKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAST 234
+ + G T +F+ D +GHG+H A T
Sbjct: 71 TDYGGDET----------------------------NFS---------DNNGHGTHVAGT 93
Query: 235 AAGNHRVPVIVSGFNYGYASGMAPGARIAVYKAL 268
A +V G+AP A + + KAL
Sbjct: 94 VAAAETGSGVV---------GVAPKADLFIIKAL 118
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I+APG I + + S +A LSGT+MA PH+AG ALI
Sbjct: 226 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 263
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 46/154 (29%)
Query: 115 KMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSI 174
+++K++ + +G+ + P + A G G +IG IDTG +HP A G
Sbjct: 11 QVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLT 70
Query: 175 SKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAST 234
+ + G T +F+ D +GHG+H A T
Sbjct: 71 TDYGGDET----------------------------NFS---------DNNGHGTHVAGT 93
Query: 235 AAGNHRVPVIVSGFNYGYASGMAPGARIAVYKAL 268
A +V G+AP A + + KAL
Sbjct: 94 VAAAETGSGVV---------GVAPKADLFIIKAL 118
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I+APG I + + S +A LSGT+MA PH+AG ALI
Sbjct: 226 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 263
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 46/154 (29%)
Query: 115 KMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSI 174
+++K++ + +G+ + P + A G G +IG IDTG +HP A G
Sbjct: 11 QVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGXQVDHPDLAERIIGGVNLT 70
Query: 175 SKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAST 234
+ + G T +F+ D +GHG+H A T
Sbjct: 71 TDYGGDET----------------------------NFS---------DNNGHGTHVAGT 93
Query: 235 AAGNHRVPVIVSGFNYGYASGMAPGARIAVYKAL 268
A +V G+AP A + + KAL
Sbjct: 94 VAAAETGSGVV---------GVAPKADLFIIKAL 118
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+I+APG I + + S +A LSGT+MA PH+AG ALI
Sbjct: 208 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 245
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 50/142 (35%), Gaps = 46/142 (32%)
Query: 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNR 186
+G+ + P + A G G +IG IDTG +HP A G + + G T
Sbjct: 5 MGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDET---- 60
Query: 187 FPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVS 246
+F+ D +GHG+H A T A +V
Sbjct: 61 ------------------------NFS---------DNNGHGTHVAGTVAAAETGSGVV- 86
Query: 247 GFNYGYASGMAPGARIAVYKAL 268
G+AP A + + KAL
Sbjct: 87 --------GVAPKADLFIIKAL 100
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 583 FALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTD 627
+ + +GTSMA PH++GVAAL+ S A +T +E++D
Sbjct: 270 YGMKAGTSMAAPHVSGVAALVI------SAANSIGKTLTPSELSD 308
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 583 FALLSGTSMATPHIAGVAALI 603
+ + +GTSMA PH++GVAAL+
Sbjct: 270 YGMKAGTSMAAPHVSGVAALV 290
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+ I+APG I A G LSGTS ATP ++GVAAL+ +R
Sbjct: 204 QQGILAPGEDILGAK----------PGGGTERLSGTSFATPIVSGVAALLLSEQVRRGET 253
Query: 610 WSPAAITSAMMTSAEVTD 627
P + ++ SA D
Sbjct: 254 PDPQKVRQLLLQSALPCD 271
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+ I+APG I A G LSGTS ATP ++GVAAL+ +R
Sbjct: 195 QQGILAPGEDILGAK----------PGGGTERLSGTSFATPIVSGVAALLLSEQVRRGET 244
Query: 610 WSPAAITSAMMTSAEVTD 627
P + ++ SA D
Sbjct: 245 PDPQKVRQLLLQSALPCD 262
>pdb|1T1E|A Chain A, High Resolution Crystal Structure Of The Intact Pro-
Kumamolisin, A Sedolisin Type Proteinase (Previously
Called Kumamolysin Or Kscp)
Length = 552
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 253 ASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNA 312
A +APGA+IAVY A T G++ I+S+S G PA+ + A
Sbjct: 274 AGALAPGAKIAVYFAPNTDAGFL-NAITTAVHDPTHKPSIVSISWGGPEDSWAPAS-IAA 331
Query: 313 LEMELLFATKAGVLVVQAAGN 333
+ L A GV V+ AAG+
Sbjct: 332 MNRAFLDAAALGVTVLAAAGD 352
>pdb|1T1I|A Chain A, High Resolution Crystal Structure Of Mutant W129a Of
Kumamolisin, A Sedolisin Type Proteinase (Previously
Called Kumamolysin Or Kscp)
Length = 364
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 253 ASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNA 312
A +APGA+IAVY A T G++ I+S+S G PA+ + A
Sbjct: 86 AGALAPGAKIAVYFAPNTDAGFL-NAITTAVHDPTHKPSIVSISAGGPEDSWAPAS-IAA 143
Query: 313 LEMELLFATKAGVLVVQAAGN 333
+ L A GV V+ AAG+
Sbjct: 144 MNRAFLDAAALGVTVLAAAGD 164
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAAL-----IKQRHP 608
K I+APG I A P +E +P L+GTSMA P + G++AL ++Q P
Sbjct: 265 KEGILAPGEEILGA-QPCTE-EP-------VRLTGTSMAAPVMTGISALLMSLQVQQGKP 315
Query: 609 KWSPAAITSAMMTS 622
+ A T+ + T+
Sbjct: 316 VDAEAVRTALLKTA 329
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAAL-----IKQRHP 608
K I+APG I A P +E +P L+GTSMA P + G++AL ++Q P
Sbjct: 265 KEGILAPGEEILGA-QPCTE-EP-------VRLTGTSMAAPVMTGISALLMSLQVQQGKP 315
Query: 609 KWSPAAITSAMMTS 622
+ A T+ + T+
Sbjct: 316 VDAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAAL-----IKQRHP 608
K I+APG I A P +E +P L+GTSMA P + G++AL ++Q P
Sbjct: 247 KEGILAPGEEILGA-QPCTE-EP-------VRLTGTSMAAPVMTGISALLMSLQVQQGKP 297
Query: 609 KWSPAAITSAMMTS 622
+ A T+ + T+
Sbjct: 298 VDAEAVRTALLKTA 311
>pdb|1GT9|1 Chain 1, High Resolution Crystal Structure Of A Thermostable
Serine-Carboxyl Type Proteinase, Kumamolisin (Kscp)
pdb|1GT9|2 Chain 2, High Resolution Crystal Structure Of A Thermostable
Serine-Carboxyl Type Proteinase, Kumamolisin (Kscp)
pdb|1GTG|1 Chain 1, Crystal Structure Of The Thermostable Serine-Carboxyl Type
Proteinase, Kumamolysin
pdb|1GTJ|1 Chain 1, Crystal Structure Of The Thermostable Serine-Carboxyl Type
Proteinase, Kumamolisin (Kscp) - Complex With
Ac-Ile-Ala-Phe-Cho
pdb|1GTJ|2 Chain 2, Crystal Structure Of The Thermostable Serine-Carboxyl Type
Proteinase, Kumamolisin (Kscp) - Complex With
Ac-Ile-Ala-Phe-Cho
pdb|1GTL|1 Chain 1, The Thermostable Serine-Carboxyl Type Proteinase,
Kumamolisin (Kscp) - Complex With Ac-Ile-Pro-Phe-Cho
pdb|1GTL|2 Chain 2, The Thermostable Serine-Carboxyl Type Proteinase,
Kumamolisin (Kscp) - Complex With Ac-Ile-Pro-Phe-Cho
Length = 357
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 253 ASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNA 312
A +APGA+IAVY A T G++ I+S+S G PA+ + A
Sbjct: 86 AGALAPGAKIAVYFAPNTDAGFL-NAITTAVHDPTHKPSIVSISWGGPEDSWAPAS-IAA 143
Query: 313 LEMELLFATKAGVLVVQAAGN 333
+ L A GV V+ AAG+
Sbjct: 144 MNRAFLDAAALGVTVLAAAGD 164
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASH 166
F+G G+V+ +D GI HP A +
Sbjct: 35 FTGHGIVVSILDDGIEKNHPDLAGN 59
>pdb|1T1G|A Chain A, High Resolution Crystal Structure Of Mutant E23a Of
Kumamolisin, A Sedolisin Type Proteinase (Previously
Called Kumamolysin Or Kscp)
Length = 364
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 253 ASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNA 312
A +APGA+IAVY A T G++ I+S+S G PA+ + A
Sbjct: 86 AGALAPGAKIAVYFAPNTDAGFL-NAITTAVHDPTHKPSIVSISWGGPEDSWAPAS-IAA 143
Query: 313 LEMELLFATKAGVLVVQAAGN 333
+ L A GV V+ AAG+
Sbjct: 144 MNRAFLDAAALGVTVLAAAGD 164
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK----QRHPK 609
+ I+APG I A G LSGT+ ATP ++GVAAL+ +R
Sbjct: 185 QQGILAPGEDILGAK----------PGGGTERLSGTAFATPIVSGVAALLLSEQVRRGET 234
Query: 610 WSPAAITSAMMTSAEVTD 627
P + ++ SA D
Sbjct: 235 PDPQKVRQLLLQSALPCD 252
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 584 ALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPIL 634
+++GTS ATP +G AL+ +P S + + SA D P++
Sbjct: 330 GVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,648,760
Number of Sequences: 62578
Number of extensions: 991938
Number of successful extensions: 2665
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2291
Number of HSP's gapped (non-prelim): 321
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)