Query 044171
Match_columns 813
No_of_seqs 421 out of 2918
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.5E-50 5.4E-55 435.9 29.9 305 116-624 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.2E-50 7E-55 450.1 21.4 289 133-671 306-616 (639)
3 cd07497 Peptidases_S8_14 Pepti 100.0 4.3E-48 9.4E-53 414.2 25.0 290 144-623 1-311 (311)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 4.9E-48 1.1E-52 405.1 21.8 244 141-627 4-254 (255)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 3.9E-47 8.4E-52 418.7 26.3 314 133-668 2-346 (346)
6 cd05562 Peptidases_S53_like Pe 100.0 1.9E-47 4.2E-52 403.3 22.4 271 141-668 1-274 (275)
7 cd07489 Peptidases_S8_5 Peptid 100.0 1.9E-46 4.2E-51 406.7 24.7 296 133-675 5-305 (312)
8 cd07478 Peptidases_S8_CspA-lik 100.0 4E-46 8.7E-51 418.9 27.9 422 142-659 1-455 (455)
9 cd07483 Peptidases_S8_Subtilis 100.0 1.9E-45 4E-50 393.5 24.1 267 145-624 1-291 (291)
10 cd07476 Peptidases_S8_thiazoli 100.0 4E-45 8.6E-50 384.8 24.3 244 141-629 6-255 (267)
11 cd07474 Peptidases_S8_subtilis 100.0 1.6E-44 3.4E-49 389.4 27.1 288 144-666 1-295 (295)
12 cd05561 Peptidases_S8_4 Peptid 100.0 1.4E-44 3E-49 375.6 22.4 224 147-628 1-229 (239)
13 cd07493 Peptidases_S8_9 Peptid 100.0 3.3E-44 7.2E-49 379.3 24.4 246 146-624 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 4.4E-44 9.6E-49 378.8 24.7 247 144-624 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 1.5E-44 3.3E-49 376.2 19.6 338 17-624 74-461 (501)
16 cd04857 Peptidases_S8_Tripepti 100.0 9.7E-43 2.1E-47 379.1 26.9 220 222-626 182-412 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.5E-42 3.2E-47 367.9 25.2 257 144-624 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 5.5E-42 1.2E-46 364.6 24.9 261 133-622 2-273 (273)
19 cd04847 Peptidases_S8_Subtilis 100.0 1.2E-42 2.6E-47 373.2 19.7 262 147-624 1-291 (291)
20 cd07494 Peptidases_S8_10 Pepti 100.0 8.8E-42 1.9E-46 364.9 25.8 160 127-355 8-173 (298)
21 cd07496 Peptidases_S8_13 Pepti 100.0 1.1E-41 2.5E-46 364.5 24.5 264 146-622 1-285 (285)
22 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.7E-41 3.6E-46 357.6 24.0 229 140-625 20-255 (255)
23 cd07490 Peptidases_S8_6 Peptid 100.0 2.5E-41 5.5E-46 356.3 23.0 253 146-624 1-254 (254)
24 cd07484 Peptidases_S8_Thermita 100.0 3.3E-41 7.2E-46 356.5 23.2 248 122-626 11-259 (260)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 5.7E-41 1.2E-45 361.3 25.2 277 140-624 2-293 (293)
26 cd04843 Peptidases_S8_11 Pepti 100.0 5.1E-41 1.1E-45 354.9 22.4 247 133-624 7-277 (277)
27 cd07480 Peptidases_S8_12 Pepti 100.0 7.7E-41 1.7E-45 359.9 22.7 148 140-338 3-172 (297)
28 cd07498 Peptidases_S8_15 Pepti 100.0 2.1E-40 4.5E-45 346.7 23.6 240 147-622 1-242 (242)
29 cd07473 Peptidases_S8_Subtilis 100.0 8.1E-40 1.8E-44 345.9 23.9 252 145-624 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 8.1E-40 1.8E-44 339.4 22.3 226 146-622 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 5.4E-40 1.2E-44 341.5 19.3 159 144-355 2-170 (247)
32 PF00082 Peptidase_S8: Subtila 100.0 3.3E-40 7.2E-45 353.5 15.5 276 148-668 1-282 (282)
33 cd07482 Peptidases_S8_Lantibio 100.0 2.9E-39 6.2E-44 348.3 22.6 154 146-338 1-159 (294)
34 cd07492 Peptidases_S8_8 Peptid 100.0 1.4E-38 3E-43 328.2 21.7 149 146-354 1-150 (222)
35 KOG4266 Subtilisin kexin isozy 100.0 2.5E-38 5.5E-43 337.4 23.4 323 80-668 92-465 (1033)
36 cd04059 Peptidases_S8_Protein_ 100.0 2.6E-38 5.6E-43 341.2 20.0 249 133-624 31-297 (297)
37 cd04848 Peptidases_S8_Autotran 100.0 2.5E-37 5.5E-42 328.3 22.1 246 143-624 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 3.5E-36 7.7E-41 334.6 22.6 359 224-810 309-689 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1.2E-32 2.6E-37 285.4 14.4 117 221-355 33-159 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 5.3E-30 1.1E-34 266.9 22.8 122 220-355 39-166 (241)
41 COG1404 AprE Subtilisin-like s 99.9 6.4E-23 1.4E-27 237.3 22.7 147 141-338 138-290 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.9E-21 6.4E-26 196.8 10.7 155 133-338 153-317 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 8.9E-17 1.9E-21 177.1 16.4 103 252-358 82-198 (361)
44 PF06280 DUF1034: Fn3-like dom 99.4 9.1E-12 2E-16 113.5 12.7 87 720-806 2-112 (112)
45 PF05922 Inhibitor_I9: Peptida 98.7 5.8E-08 1.2E-12 83.1 9.2 79 25-119 1-82 (82)
46 cd02133 PA_C5a_like PA_C5a_lik 98.6 2.3E-07 4.9E-12 88.5 10.8 103 414-541 39-141 (143)
47 cd02120 PA_subtilisin_like PA_ 98.6 6.8E-07 1.5E-11 83.3 12.3 118 364-500 2-120 (126)
48 KOG3525 Subtilisin-like propro 98.5 1.1E-06 2.3E-11 98.1 12.1 159 133-339 25-189 (431)
49 COG4934 Predicted protease [Po 98.3 1.1E-05 2.4E-10 96.8 14.9 98 253-353 288-395 (1174)
50 cd02129 PA_hSPPL_like PA_hSPPL 98.1 1.4E-05 3E-10 72.6 8.7 83 408-498 31-114 (120)
51 PF02225 PA: PA domain; Inter 98.0 1.7E-05 3.8E-10 70.6 8.0 77 413-496 24-101 (101)
52 cd04817 PA_VapT_like PA_VapT_l 98.0 1.5E-05 3.3E-10 74.5 7.7 77 415-498 49-133 (139)
53 cd02130 PA_ScAPY_like PA_ScAPY 97.9 0.00011 2.4E-09 68.0 11.7 83 408-499 32-115 (122)
54 cd04816 PA_SaNapH_like PA_SaNa 97.9 4.2E-05 9.1E-10 70.7 8.5 85 407-499 29-115 (122)
55 cd02127 PA_hPAP21_like PA_hPAP 97.8 0.00011 2.3E-09 67.2 8.7 85 407-500 21-110 (118)
56 cd02122 PA_GRAIL_like PA _GRAI 97.8 0.00014 3.1E-09 68.4 9.4 86 407-499 44-131 (138)
57 cd02125 PA_VSR PA_VSR: Proteas 97.7 0.00015 3.3E-09 67.2 8.9 86 407-499 22-120 (127)
58 cd02126 PA_EDEM3_like PA_EDEM3 97.7 9.9E-05 2.2E-09 68.5 7.7 84 407-499 27-119 (126)
59 cd04813 PA_1 PA_1: Protease-as 97.7 0.00012 2.7E-09 66.7 8.0 83 407-499 27-112 (117)
60 cd02124 PA_PoS1_like PA_PoS1_l 97.7 0.00017 3.7E-09 67.1 8.7 82 407-499 41-122 (129)
61 cd02132 PA_GO-like PA_GO-like: 97.7 0.00016 3.5E-09 68.3 8.5 81 407-499 48-132 (139)
62 cd02123 PA_C_RZF_like PA_C-RZF 97.7 0.00015 3.3E-09 69.6 8.3 86 407-499 50-140 (153)
63 cd04818 PA_subtilisin_1 PA_sub 97.6 0.00022 4.7E-09 65.6 8.3 83 407-499 27-111 (118)
64 cd00538 PA PA: Protease-associ 97.5 0.0004 8.7E-09 64.4 8.6 86 407-499 30-119 (126)
65 cd04819 PA_2 PA_2: Protease-as 97.5 0.0014 3E-08 61.0 11.7 78 415-499 37-120 (127)
66 PF14874 PapD-like: Flagellar- 96.8 0.042 9.2E-07 48.8 13.8 83 725-809 19-101 (102)
67 PF06030 DUF916: Bacterial pro 96.7 0.016 3.5E-07 53.2 10.3 70 725-795 26-120 (121)
68 PF10633 NPCBM_assoc: NPCBM-as 96.6 0.013 2.9E-07 49.3 8.6 60 725-784 4-65 (78)
69 PF11614 FixG_C: IG-like fold 95.8 0.066 1.4E-06 49.0 9.4 56 728-783 33-88 (118)
70 cd04815 PA_M28_2 PA_M28_2: Pro 95.6 0.042 9.1E-07 51.6 7.3 84 415-499 32-127 (134)
71 cd04814 PA_M28_1 PA_M28_1: Pro 94.8 0.1 2.2E-06 49.1 7.5 50 414-463 39-100 (142)
72 cd02128 PA_TfR PA_TfR: Proteas 94.6 0.046 9.9E-07 53.7 4.6 40 418-463 51-90 (183)
73 cd04820 PA_M28_1_1 PA_M28_1_1: 94.1 0.29 6.3E-06 45.8 8.7 50 414-463 41-96 (137)
74 cd04822 PA_M28_1_3 PA_M28_1_3: 94.1 0.098 2.1E-06 49.8 5.6 50 414-463 39-100 (151)
75 PF07718 Coatamer_beta_C: Coat 93.3 0.66 1.4E-05 43.2 9.3 66 730-795 73-139 (140)
76 COG1470 Predicted membrane pro 93.0 1.1 2.3E-05 49.7 12.0 59 725-783 283-347 (513)
77 COG1470 Predicted membrane pro 92.4 0.73 1.6E-05 50.9 9.8 71 725-795 396-469 (513)
78 cd02131 PA_hNAALADL2_like PA_h 92.3 0.18 3.9E-06 47.5 4.4 39 419-463 37-75 (153)
79 PF05506 DUF756: Domain of unk 91.8 1.5 3.2E-05 37.8 9.3 64 726-798 18-81 (89)
80 TIGR02745 ccoG_rdxA_fixG cytoc 90.8 1.1 2.4E-05 50.5 9.5 55 728-782 348-402 (434)
81 cd02121 PA_GCPII_like PA_GCPII 90.8 0.35 7.7E-06 49.2 5.0 40 418-463 67-106 (220)
82 PF00345 PapD_N: Pili and flag 89.8 3 6.5E-05 38.3 10.0 68 727-795 15-90 (122)
83 KOG2442 Uncharacterized conser 88.4 1.4 3E-05 48.9 7.5 71 418-495 91-164 (541)
84 PF00635 Motile_Sperm: MSP (Ma 84.9 3.6 7.8E-05 36.7 7.3 55 726-782 18-72 (109)
85 PF07705 CARDB: CARDB; InterP 84.2 6.9 0.00015 34.0 8.8 64 725-793 18-83 (101)
86 smart00635 BID_2 Bacterial Ig- 83.8 4.6 9.9E-05 34.1 7.0 45 755-802 4-48 (81)
87 KOG4628 Predicted E3 ubiquitin 82.2 2.5 5.5E-05 45.7 5.8 72 419-497 76-148 (348)
88 cd04821 PA_M28_1_2 PA_M28_1_2: 81.9 3.4 7.4E-05 39.7 6.1 49 415-463 42-103 (157)
89 PF07610 DUF1573: Protein of u 80.4 5.6 0.00012 29.4 5.5 43 732-777 2-45 (45)
90 PRK15308 putative fimbrial pro 76.1 20 0.00044 36.9 10.0 67 727-795 32-114 (234)
91 PF12690 BsuPI: Intracellular 74.2 19 0.0004 30.6 7.7 54 729-782 3-73 (82)
92 PF13598 DUF4139: Domain of un 72.8 14 0.0003 40.2 8.4 53 728-780 244-314 (317)
93 PF14016 DUF4232: Protein of u 72.8 23 0.00049 32.9 8.8 80 726-805 18-112 (131)
94 PF00927 Transglut_C: Transglu 65.3 28 0.0006 30.9 7.4 57 725-782 14-79 (107)
95 PF02368 Big_2: Bacterial Ig-l 64.5 6 0.00013 33.1 2.7 45 755-803 4-48 (79)
96 PLN03080 Probable beta-xylosid 63.0 23 0.00049 43.5 8.3 78 727-804 685-778 (779)
97 KOG3920 Uncharacterized conser 61.2 7.9 0.00017 36.4 3.0 49 407-463 74-122 (193)
98 PRK15098 beta-D-glucoside gluc 59.7 25 0.00055 43.1 7.9 56 726-782 667-730 (765)
99 PF08194 DIM: DIM protein; In 53.7 18 0.00039 25.3 2.9 28 1-28 1-28 (36)
100 PF00553 CBM_2: Cellulose bind 51.7 1.6E+02 0.0036 25.8 9.8 32 725-756 12-44 (101)
101 TIGR02231 conserved hypothetic 51.6 59 0.0013 38.1 9.0 55 728-782 444-519 (525)
102 PRK13203 ureB urease subunit b 50.1 52 0.0011 28.9 5.9 52 725-776 17-82 (102)
103 PF11611 DUF4352: Domain of un 48.7 95 0.0021 27.9 8.2 57 728-784 38-106 (123)
104 PF04744 Monooxygenase_B: Mono 48.0 2.1E+02 0.0046 31.3 11.4 77 726-805 263-372 (381)
105 PF08626 TRAPPC9-Trs120: Trans 46.7 1.3E+02 0.0029 39.0 11.7 87 725-812 798-921 (1185)
106 PF00699 Urease_beta: Urease b 46.5 68 0.0015 28.1 6.1 52 725-776 16-81 (100)
107 PF07233 DUF1425: Protein of u 46.0 1.6E+02 0.0035 25.5 8.7 52 724-775 22-78 (94)
108 cd00407 Urease_beta Urease bet 44.2 59 0.0013 28.5 5.4 52 725-776 17-82 (101)
109 TIGR00192 urease_beta urease, 43.9 58 0.0013 28.6 5.3 52 725-776 17-82 (101)
110 PF14263 DUF4354: Domain of un 43.9 69 0.0015 29.4 6.1 17 727-743 48-64 (124)
111 KOG1058 Vesicle coat complex C 42.4 53 0.0012 39.0 6.3 65 732-796 740-805 (948)
112 PRK13201 ureB urease subunit b 40.2 83 0.0018 29.0 5.9 52 725-776 17-82 (136)
113 PF08260 Kinin: Insect kinin p 39.6 13 0.00027 17.0 0.3 6 534-539 3-8 (8)
114 PRK13205 ureB urease subunit b 38.9 69 0.0015 30.2 5.3 52 725-776 17-82 (162)
115 PRK09918 putative fimbrial cha 37.6 3.7E+02 0.008 27.6 11.2 70 726-795 38-110 (230)
116 PRK13202 ureB urease subunit b 35.9 95 0.002 27.4 5.4 49 728-776 21-83 (104)
117 PF13620 CarboxypepD_reg: Carb 32.5 1.7E+02 0.0036 24.1 6.5 42 733-778 41-82 (82)
118 PRK13204 ureB urease subunit b 31.8 99 0.0021 29.2 5.2 52 725-776 40-105 (159)
119 PF02845 CUE: CUE domain; Int 31.2 49 0.0011 23.9 2.6 24 600-623 5-28 (42)
120 PRK15019 CsdA-binding activato 30.7 49 0.0011 31.5 3.2 33 584-617 77-109 (147)
121 TIGR03096 nitroso_cyanin nitro 29.3 1.4E+02 0.0029 28.1 5.7 24 753-776 53-76 (135)
122 TIGR03391 FeS_syn_CsdE cystein 28.6 57 0.0012 30.7 3.2 34 584-618 72-105 (138)
123 PRK13198 ureB urease subunit b 27.3 1.3E+02 0.0029 28.4 5.2 52 725-776 45-110 (158)
124 smart00809 Alpha_adaptinC2 Ada 27.3 4.1E+02 0.0089 23.0 10.2 56 727-782 19-76 (104)
125 PF06510 DUF1102: Protein of u 26.9 5.3E+02 0.011 24.4 9.0 34 762-795 107-140 (146)
126 PF14310 Fn3-like: Fibronectin 26.7 71 0.0015 26.0 3.1 21 761-781 25-45 (71)
127 PF14646 MYCBPAP: MYCBP-associ 26.5 5.8E+02 0.013 28.9 11.5 63 731-794 252-325 (426)
128 PF13940 Ldr_toxin: Toxin Ldr, 26.5 55 0.0012 22.4 1.8 13 591-603 14-26 (35)
129 PRK09296 cysteine desufuration 25.6 69 0.0015 30.2 3.2 33 584-617 67-99 (138)
130 PRK13192 bifunctional urease s 25.3 1.6E+02 0.0034 29.5 5.5 52 725-776 126-191 (208)
131 PF13473 Cupredoxin_1: Cupredo 24.3 1E+02 0.0022 27.1 3.9 41 727-777 42-82 (104)
132 cd09030 DUF1425 Putative perip 24.2 2.9E+02 0.0062 24.2 6.7 51 726-776 32-87 (101)
133 COG2166 sufE Cysteine desulfur 24.0 72 0.0016 30.1 2.9 32 585-617 73-104 (144)
134 PF02657 SufE: Fe-S metabolism 23.9 81 0.0018 29.1 3.2 33 585-618 59-91 (125)
135 PF08821 CGGC: CGGC domain; I 23.8 3.6E+02 0.0078 24.1 7.2 72 254-329 31-104 (107)
136 PF05753 TRAP_beta: Translocon 23.8 5.5E+02 0.012 25.3 9.3 55 726-781 38-99 (181)
137 PF13157 DUF3992: Protein of u 23.8 2.6E+02 0.0056 24.4 6.0 33 761-793 54-90 (92)
138 PF04255 DUF433: Protein of un 23.0 74 0.0016 24.7 2.4 37 584-620 12-54 (56)
139 TIGR01451 B_ant_repeat conserv 22.8 2.7E+02 0.0058 21.3 5.4 39 725-765 11-50 (53)
140 PF14742 GDE_N_bis: N-terminal 22.6 2E+02 0.0043 28.7 6.1 65 728-794 93-179 (194)
141 PF02883 Alpha_adaptinC2: Adap 22.1 5.6E+02 0.012 22.7 10.7 54 726-779 24-79 (115)
142 cd01836 FeeA_FeeB_like SGNH_hy 21.7 4.8E+02 0.01 25.2 8.7 66 265-330 43-112 (191)
143 PRK13986 urease subunit alpha; 21.6 2.1E+02 0.0046 28.9 5.7 52 725-776 122-187 (225)
144 PF04442 CtaG_Cox11: Cytochrom 21.5 5.3E+02 0.012 24.7 8.2 59 752-812 48-130 (152)
145 smart00546 CUE Domain that may 21.0 1.3E+02 0.0029 21.7 3.3 25 599-623 5-29 (43)
146 smart00637 CBD_II CBD_II domai 20.7 5.3E+02 0.012 21.9 7.7 27 729-755 9-36 (92)
147 TIGR03102 halo_cynanin halocya 20.5 1.6E+02 0.0035 26.7 4.4 20 755-774 36-55 (115)
148 PF13473 Cupredoxin_1: Cupredo 20.2 1.4E+02 0.0031 26.2 4.0 20 757-776 31-50 (104)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-50 Score=435.89 Aligned_cols=305 Identities=50% Similarity=0.871 Sum_probs=250.5
Q ss_pred ceeccCCCCcccCCCCCCCCC-CCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCC
Q 044171 116 MEKLTMHTPEFLGIPVGVWPT-LGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNS 194 (813)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~w~~-~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 194 (813)
+++++++++++++++. .|.. ++..+++|+||+|||||||||++||+|.+..... ....|.+.|..+..+....+|+
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGP--YPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCC--CCCCCCCcccCCCCcCccCcCC
Confidence 3577888999999876 8876 5667899999999999999999999999865432 2337889998888877778999
Q ss_pred ceEEEEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-C
Q 044171 195 KIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-G 273 (813)
Q Consensus 195 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~ 273 (813)
|+++.++|.++.......+.......+.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+ +
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 999999998764433222333445677889999999999999987655555555566788999999999999999844 8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEee
Q 044171 274 YMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAA 353 (813)
Q Consensus 274 ~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA 353 (813)
..+++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|......++..|++++|||
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga 233 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA 233 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEe
Confidence 88899999999999999999999998653 12346778888889999999999999999877777888888998887
Q ss_pred cccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccC
Q 044171 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFD 433 (813)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~ 433 (813)
++
T Consensus 234 ~~------------------------------------------------------------------------------ 235 (307)
T cd04852 234 ST------------------------------------------------------------------------------ 235 (307)
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeee
Q 044171 434 FENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHA 513 (813)
Q Consensus 434 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 513 (813)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChh
Q 044171 514 RARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMAT 593 (813)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAa 593 (813)
+||||+|||.+|++++..............|..++||||||
T Consensus 236 ---------------------------------------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~Aa 276 (307)
T cd04852 236 ---------------------------------------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMAS 276 (307)
T ss_pred ---------------------------------------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHH
Confidence 35699999999999986432222222346899999999999
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 594 PHIAGVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 594 P~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
|+|||++|||+|++|+|+|.+||++|++||+
T Consensus 277 P~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 277 PHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999984
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.2e-50 Score=450.10 Aligned_cols=289 Identities=19% Similarity=0.282 Sum_probs=210.1
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCce--EEEEEchhhhhhcC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI--VGAQYFARAAIAYG 210 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki--~g~~~~~~~~~~~~ 210 (813)
+|... .+.+|+||+|||||||||++||||.++.+.....+. |.++.....|+.+ +.+++|+++
T Consensus 306 aw~~~--~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~--------GrdgiDdD~nG~vdd~~G~nfVd~----- 370 (639)
T PTZ00262 306 TQELI--EPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELH--------GRKGIDDDNNGNVDDEYGANFVNN----- 370 (639)
T ss_pred HHHHh--hccCCCCcEEEEEccCCCCCChhhhhhccccccccc--------CccccccccCCcccccccccccCC-----
Confidence 55532 246899999999999999999999986432111110 1111111111111 234455432
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCC
Q 044171 211 DFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDG 289 (813)
Q Consensus 211 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g 289 (813)
...|.|++||||||||||||..+++ .++.||||+|+|+++|+++..+ +..+++++||+||++.|
T Consensus 371 -------~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~G 435 (639)
T PTZ00262 371 -------DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISRE 435 (639)
T ss_pred -------CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCC
Confidence 2456789999999999999975321 3468999999999999999877 88999999999999999
Q ss_pred CcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------CCC----CCCceEEE
Q 044171 290 VDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS--------------ILS----FSPWITSI 351 (813)
Q Consensus 290 ~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~~~vitV 351 (813)
++|||||||+.. +...+..|+.+|.++|++||+||||+|..... +|+ ..++||+|
T Consensus 436 A~VINmSlG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaV 508 (639)
T PTZ00262 436 AHMINGSFSFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITV 508 (639)
T ss_pred CCEEEeccccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEE
Confidence 999999999643 23568889999999999999999999864321 221 23566666
Q ss_pred eecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeec
Q 044171 352 AASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYS 431 (813)
Q Consensus 352 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~ 431 (813)
||++.+..
T Consensus 509 GAv~~d~~------------------------------------------------------------------------ 516 (639)
T PTZ00262 509 SNLIKDKN------------------------------------------------------------------------ 516 (639)
T ss_pred eeccCCCC------------------------------------------------------------------------
Confidence 66421100
Q ss_pred cCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeee
Q 044171 432 FDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVF 511 (813)
Q Consensus 432 ~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~ 511 (813)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCC
Q 044171 512 HARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591 (813)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSM 591 (813)
..-.++.||++|. .++||+|||++|+|+.+ ++.|..++||||
T Consensus 517 ----------------~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~p----------~g~Y~~~SGTSm 558 (639)
T PTZ00262 517 ----------------NQYSLSPNSFYSA------------KYCQLAAPGTNIYSTFP----------KNSYRKLNGTSM 558 (639)
T ss_pred ----------------CcccccccccCCC------------CcceEEeCCCCeeeccC----------CCceeecCCCch
Confidence 0001345566652 23499999999999984 458999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccC-ccccCccCcCCCC
Q 044171 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFG-AGFINPARAIDPG 670 (813)
Q Consensus 592 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-aG~vd~~~A~~~~ 670 (813)
|||||||+||||++++|+|++.+|+++|++||.+++.... .+| +|+||+++|++..
T Consensus 559 AAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~n-----------------------~~~wgG~LDa~kAV~~A 615 (639)
T PTZ00262 559 AAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLKN-----------------------KVKWGGYLDIHHAVNLA 615 (639)
T ss_pred hHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCCC-----------------------ccccCcEEcHHHHHHHH
Confidence 9999999999999999999999999999999987632111 233 3899999999865
Q ss_pred e
Q 044171 671 L 671 (813)
Q Consensus 671 l 671 (813)
+
T Consensus 616 i 616 (639)
T PTZ00262 616 I 616 (639)
T ss_pred H
Confidence 4
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-48 Score=414.19 Aligned_cols=290 Identities=30% Similarity=0.356 Sum_probs=189.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
|+||+|||||||||.+||||.++... .|...+ .+.+++..+.++..+ ....+.|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~------~~~~~~---------d~~~~~~~g~d~~~~-----------~~~~~~D 54 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF------SWKLKF---------DYKAYLLPGMDKWGG-----------FYVIMYD 54 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC------Cccccc---------CcCCCccCCcCCCCC-----------ccCCCCC
Confidence 89999999999999999999764310 010000 001112222222211 1134678
Q ss_pred CCCCccccccccccCCCccceeccc-ccccccccccCccEEEEEEeeCCC-CCHHHHHH-------HHHHHH--hCCCcE
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGF-NYGYASGMAPGARIAVYKALYTFG-GYMADVVA-------AVDQAV--EDGVDI 292 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~-~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~~V 292 (813)
++||||||||||||.........++ ....+.||||+|+|+.+|++...+ .....+.. +++|+. +++++|
T Consensus 55 ~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V 134 (311)
T cd07497 55 FFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDV 134 (311)
T ss_pred ccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceE
Confidence 9999999999999985321110000 113578999999999999997543 32222222 444443 679999
Q ss_pred EEEccCCCCCCC-CChhhhhHHHHHHHHH-HhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCccccceeeecC
Q 044171 293 ISLSVGPSAVPS-GPAAFLNALEMELLFA-TKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 293 In~S~G~~~~~~-~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
||||||...... .+..-.+..+.+++.+ .++|+++|+||||+|.... ..|+.++++|+|||++.....+... +
T Consensus 135 IN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-~-- 211 (311)
T cd07497 135 ISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-F-- 211 (311)
T ss_pred EEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-h--
Confidence 999999754221 1100112222233322 3899999999999997543 4567889999999975321100000 0
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
.
T Consensus 212 ---------------------------------------~---------------------------------------- 212 (311)
T cd07497 212 ---------------------------------------G---------------------------------------- 212 (311)
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
. ....
T Consensus 213 -----------~----------------------------------------------------------------~~~~ 217 (311)
T cd07497 213 -----------Y----------------------------------------------------------------LPGG 217 (311)
T ss_pred -----------c----------------------------------------------------------------ccCC
Confidence 0 0011
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
.+.++.||||||+.+ +++||||+|||++|+++.+.............|..++|||||||||||++|||+|++|
T Consensus 218 ~~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~ 290 (311)
T cd07497 218 SGDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALK 290 (311)
T ss_pred CCCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhh
Confidence 245899999999987 7999999999999999876432211111234799999999999999999999999886
Q ss_pred ------CCCHHHHHHHHHccc
Q 044171 609 ------KWSPAAITSAMMTSA 623 (813)
Q Consensus 609 ------~~s~~~ik~~L~~TA 623 (813)
.++|++||++|++||
T Consensus 291 ~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 291 EKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hhcCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=4.9e-48 Score=405.14 Aligned_cols=244 Identities=26% Similarity=0.381 Sum_probs=194.2
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
+++|+||+|||||||||.+||+|.+... ..+|.. ...
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~------------------------------~~~~~~-------------~~~ 40 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE------------------------------RTNWTN-------------EKT 40 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc------------------------------ccccCC-------------CCC
Confidence 8999999999999999999999985310 001110 123
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGP 299 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~ 299 (813)
..|+.||||||||||+|+.. ...||||+|+|+.+|++.+.+ +..++++++++||++++++|||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999999742 257999999999999998876 677889999999999999999999997
Q ss_pred CCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCccccceeeecCCcEEEeeec
Q 044171 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGL 377 (813)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
... ....+.+++.++.++|++||+||||+|+... ..|+..+++|+|||++.+
T Consensus 110 ~~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~-------------------- 163 (255)
T cd07479 110 PDF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD-------------------- 163 (255)
T ss_pred CCC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC--------------------
Confidence 532 1234566677888999999999999997543 356778899999984311
Q ss_pred CCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEE
Q 044171 378 APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFI 457 (813)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 457 (813)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeeccc
Q 044171 458 LRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSS 537 (813)
Q Consensus 458 ~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS 537 (813)
+.++.|||
T Consensus 164 ------------------------------------------------------------------------~~~~~~S~ 171 (255)
T cd07479 164 ------------------------------------------------------------------------DNIARFSS 171 (255)
T ss_pred ------------------------------------------------------------------------CccccccC
Confidence 23678899
Q ss_pred CCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC----CCCHH
Q 044171 538 RGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP----KWSPA 613 (813)
Q Consensus 538 ~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p----~~s~~ 613 (813)
+|++... .+...|++||||+|||.+|+++.. ++.|..++|||||||||||++|||+|++| .++|.
T Consensus 172 ~g~~~~~-~p~~~g~~~~di~apG~~i~~~~~----------~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~ 240 (255)
T cd07479 172 RGMTTWE-LPGGYGRVKPDIVTYGSGVYGSKL----------KGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPA 240 (255)
T ss_pred CCCCccc-ccCCCCCcCccEEecCCCeecccc----------CCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHH
Confidence 9965311 011127899999999999998763 34789999999999999999999999999 78999
Q ss_pred HHHHHHHccccccC
Q 044171 614 AITSAMMTSAEVTD 627 (813)
Q Consensus 614 ~ik~~L~~TA~~~~ 627 (813)
+||++|++||+++.
T Consensus 241 ~vk~~L~~sA~~~~ 254 (255)
T cd07479 241 SMKQALIESATRLP 254 (255)
T ss_pred HHHHHHHhhcccCC
Confidence 99999999998763
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.9e-47 Score=418.74 Aligned_cols=314 Identities=31% Similarity=0.437 Sum_probs=231.2
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCccccccccc----ccCCCCCCCCCCCceEEEEEchhhhhh
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKC----TTGNRFPSTACNSKIVGAQYFARAAIA 208 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~n~ki~g~~~~~~~~~~ 208 (813)
+|+.. .++|+||+|||||||||++||+|.+...... .|++.+ .........+.+.+++++++|.+..
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA----KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNN-- 72 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCccc----ccchhhhhhhhcccCCCCcccccCCCeeEcCCCCC--
Confidence 57662 2489999999999999999999998653221 111001 0111222346778999999998651
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeC--CC-CCHHHHHHHHHHH
Q 044171 209 YGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYT--FG-GYMADVVAAVDQA 285 (813)
Q Consensus 209 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~--~g-~~~~~i~~ai~~a 285 (813)
.+.....|..+|||||||||+|...... ....+.||||+|+|+.+|+++. .+ .....+++|++++
T Consensus 73 -------~~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a 140 (346)
T cd07475 73 -------DDILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDA 140 (346)
T ss_pred -------CccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 1111144788999999999999864211 1235789999999999999974 33 6778899999999
Q ss_pred HhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC----------------CCCCCceE
Q 044171 286 VEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI----------------LSFSPWIT 349 (813)
Q Consensus 286 ~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~~~vi 349 (813)
++.|++|||||||...... .....+..+++++.++|++||+||||+|...... +...+++|
T Consensus 141 ~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i 217 (346)
T cd07475 141 VKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVL 217 (346)
T ss_pred HHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCce
Confidence 9999999999999865432 2446778888999999999999999998654221 12234444
Q ss_pred EEeecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEe
Q 044171 350 SIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICT 429 (813)
Q Consensus 350 tVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~ 429 (813)
+||+++..
T Consensus 218 ~Vga~~~~------------------------------------------------------------------------ 225 (346)
T cd07475 218 TVASANKK------------------------------------------------------------------------ 225 (346)
T ss_pred EEeecccc------------------------------------------------------------------------
Confidence 44442100
Q ss_pred eccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCcee
Q 044171 430 YSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAV 509 (813)
Q Consensus 430 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v 509 (813)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeecc
Q 044171 510 VFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGT 589 (813)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGT 589 (813)
......+.++.||+|||+.. +++||||+|||.+|+++.. ++.|..++||
T Consensus 226 --------------~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~~----------~~~~~~~~GT 274 (346)
T cd07475 226 --------------VPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTVN----------DNTYGYMSGT 274 (346)
T ss_pred --------------cCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEecC----------CCceEeeCcH
Confidence 00112245789999999986 6999999999999999873 3589999999
Q ss_pred CChhhHHHHHHHHHHHh----CCCCCHHH----HHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCcccc
Q 044171 590 SMATPHIAGVAALIKQR----HPKWSPAA----ITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFI 661 (813)
Q Consensus 590 SMAaP~VAG~aALl~q~----~p~~s~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~v 661 (813)
|||||+|||++|||+|+ +|.|++.+ ||++|++||.+...... ....+.++++|+|+|
T Consensus 275 S~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~---------------~~~~~~~~~~G~G~v 339 (346)
T cd07475 275 SMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSED---------------TKTYYSPRRQGAGLI 339 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCC---------------CCccCCccccCcchh
Confidence 99999999999999997 78888876 78899999985321111 244567789999999
Q ss_pred CccCcCC
Q 044171 662 NPARAID 668 (813)
Q Consensus 662 d~~~A~~ 668 (813)
|+.+|++
T Consensus 340 n~~~Av~ 346 (346)
T cd07475 340 DVAKAIA 346 (346)
T ss_pred cHHHhhC
Confidence 9999985
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.9e-47 Score=403.34 Aligned_cols=271 Identities=24% Similarity=0.264 Sum_probs=200.4
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
|++|+||+|||||||||.+||++.+.... ++.+...+.. ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-------------------------~l~~~~~~~~------------~~~~ 43 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-------------------------DLPGNVNVLG------------DLDG 43 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-------------------------CCCcceeecc------------ccCC
Confidence 57999999999999999998855432110 0111111100 0123
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPS 300 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~S~G~~ 300 (813)
..|.++|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||||||..
T Consensus 44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~ 101 (275)
T cd05562 44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYL 101 (275)
T ss_pred CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 4578899999999973 79999999998874 3478899999999999999999999975
Q ss_pred CCCCCChhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecC
Q 044171 301 AVPSGPAAFLNALEMELLFATKA-GVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLA 378 (813)
Q Consensus 301 ~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (813)
..+. .....+..+++++.++ |++||+||||+|... ...|+..+++|+|||++.+.....+
T Consensus 102 ~~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~--------------- 163 (275)
T cd05562 102 NEPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG--------------- 163 (275)
T ss_pred CCCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc---------------
Confidence 4321 1124577788888887 999999999999854 3457889999999997643221000
Q ss_pred CCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEE
Q 044171 379 PPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFIL 458 (813)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 458 (813)
.|.
T Consensus 164 ------------------------------s~~----------------------------------------------- 166 (275)
T cd05562 164 ------------------------------SDP----------------------------------------------- 166 (275)
T ss_pred ------------------------------ccc-----------------------------------------------
Confidence 000
Q ss_pred EeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccC
Q 044171 459 RMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSR 538 (813)
Q Consensus 459 ~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~ 538 (813)
. . .......+.||++
T Consensus 167 ----~---~----------------------------------------------------------~~~~s~~~~~~~~ 181 (275)
T cd05562 167 ----A---P----------------------------------------------------------GGTPSSFDPVGIR 181 (275)
T ss_pred ----c---c----------------------------------------------------------CCCcccccCCccc
Confidence 0 0 0000124667889
Q ss_pred CCCcCcccccCCCCCCCceecCCCc-EEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044171 539 GPDVNNALLQTADVLKPNIMAPGSS-IWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITS 617 (813)
Q Consensus 539 Gp~~~~~~~~~~g~~KPDI~APG~~-I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 617 (813)
||+.+ +++||||+|||+. +.++. .++.|..++|||||||||||++|||+|++|+|++++||+
T Consensus 182 ~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~ 244 (275)
T cd05562 182 LPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRD 244 (275)
T ss_pred CcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99876 6899999999764 44443 345899999999999999999999999999999999999
Q ss_pred HHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 618 AMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 618 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
+|++||+++... ..+..||||+||+.+|++
T Consensus 245 ~L~~tA~~~~~~---------------------g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 245 ALRSTALDMGEP---------------------GYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHhCcccCCC---------------------CCCCCcCcCcccHHHHhh
Confidence 999999876422 234589999999999986
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-46 Score=406.66 Aligned_cols=296 Identities=31% Similarity=0.426 Sum_probs=227.3
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|+. +++|+||+|||||+|||++||+|.++.... .++.+.++|..+... ..
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~-----------------------~~~~~~~d~~~~~~~--~~ 55 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG-----------------------CKVAGGYDFVGDDYD--GT 55 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC-----------------------ceeccccccCCcccc--cc
Confidence 5555 899999999999999999999999753211 123333333322100 01
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~ 291 (813)
+...+...+.|.++|||||||||++...+ ..+.||||+|+|+.+|+++..+ ...+.++++++++++++++
T Consensus 56 ~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ 126 (312)
T cd07489 56 NPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGAD 126 (312)
T ss_pred cCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 11223345667899999999999998542 2468999999999999998766 6677789999999999999
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecC
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
|||||||...... ...+..+++++.++|+++|+||||+|.... ..++..+++|+||+++
T Consensus 127 iIn~S~g~~~~~~-----~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------- 188 (312)
T cd07489 127 VITASLGGPSGWS-----EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------- 188 (312)
T ss_pred EEEeCCCcCCCCC-----CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------
Confidence 9999999765332 256677778888999999999999987532 3355667788887621
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhC-
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRH- 607 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~- 607 (813)
+.||+|||+.+ ...||||+|||++++++++.. .+.|..++|||||||+|||++|||+|++
T Consensus 189 ----~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~ 249 (312)
T cd07489 189 ----SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARH 249 (312)
T ss_pred ----CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcC
Confidence 45688999986 589999999999999988642 2369999999999999999999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCCeeeec
Q 044171 608 PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNA 675 (813)
Q Consensus 608 p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~lv~~~ 675 (813)
|.+++.+||++|++||.++...+..- . ...+++..++|||+||+.+|++..-.+++
T Consensus 250 ~~~~~~~v~~~l~~ta~~~~~~~~~~---~---------~~~~~~~~~~G~G~vn~~~a~~~~~~~~~ 305 (312)
T cd07489 250 GKLSPAELRDLLASTAKPLPWSDGTS---A---------LPDLAPVAQQGAGLVNAYKALYATTTLSP 305 (312)
T ss_pred CCCCHHHHHHHHHHhCccccccCCCc---c---------ccCCCCHhhcCcceeeHHHHhcCCccccc
Confidence 99999999999999999875433200 0 11246667899999999999997655443
No 8
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4e-46 Score=418.94 Aligned_cols=422 Identities=23% Similarity=0.224 Sum_probs=226.9
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhh-hhhcCCCCCCCCCCC
Q 044171 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA-AIAYGDFNSTRDYAS 220 (813)
Q Consensus 142 ~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~~~~~ 220 (813)
++|+||+|||||||||+.||+|.+.+.. .+....|++....+... ....++..+.++ ...........+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~-tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGT-TRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCC-chhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccCc
Confidence 4899999999999999999999975432 23344787766543221 112222222221 000000111122244
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-----------CCHHHHHHHHHHHHhC-
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-----------GYMADVVAAVDQAVED- 288 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~- 288 (813)
..|++||||||||||||+... ...+.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 568999999999999998542 23578999999999999998764 4578999999999874
Q ss_pred ----CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCCCCCCCC-----CCce--EEEeeccc
Q 044171 289 ----GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKA-GVLVVQAAGNSGPSSSSILSF-----SPWI--TSIAASIT 356 (813)
Q Consensus 289 ----g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-----~~~v--itVgA~~~ 356 (813)
.+.|||||||...++.. ..+.++++++.+..+ |++||+||||+|....+.... .... +.|+.-.
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~---g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~- 221 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHD---GTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE- 221 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCC---CccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC-
Confidence 47899999998765421 235677777777766 999999999999754433211 0001 2232211
Q ss_pred CccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCC
Q 044171 357 DRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFEN 436 (813)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~ 436 (813)
..+.-.+....-..+...-..|.. ...+.+.... .. ...+.......++.+..+......
T Consensus 222 -~~~~~eiW~~~~d~~~v~i~sP~G---e~~~~i~~~~-------------~~---~~~~~~~~~~t~i~v~y~~~~~~~ 281 (455)
T cd07478 222 -KGFNLEIWGDFPDRFSVSIISPSG---ESSGRINPGI-------------GG---SESYKFVFEGTTVYVYYYLPEPYT 281 (455)
T ss_pred -cceEEEEecCCCCEEEEEEECCCC---CccCccCcCC-------------Cc---ceeEEEEECCeEEEEEEcCCCCCC
Confidence 111000100000000000001100 0000000000 00 000000000111111111111111
Q ss_pred CchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCccccccCCcc-eEEEcccchhHHHHHHHhhcCccCCCCceeeeeee
Q 044171 437 DDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKFKDMALDVP-GIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHAR 514 (813)
Q Consensus 437 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~~~~~~~ip-~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 514 (813)
|...+...+.++ ..|-.-+.++...... .....+......-+ ..++...... .-..+.....++++.
T Consensus 282 g~~~i~i~~~~~-~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~~~~~--------tit~Pa~~~~vitVg-- 350 (455)
T cd07478 282 GDQLIFIRFKNI-KPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEPDPYT--------TLTIPGTARSVITVG-- 350 (455)
T ss_pred CCeEEEEEccCC-CccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecCCCCc--------eEecCCCCCCcEEEE--
Confidence 111111111111 1122333333222100 00000000000000 0011000000 000000001111111
Q ss_pred EEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhh
Q 044171 515 ARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATP 594 (813)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 594 (813)
.++...+.++.||||||+.+ +++||||+|||++|+++.+ ++.|..++|||||||
T Consensus 351 ---------a~~~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~~----------~~~~~~~sGTS~Aap 404 (455)
T cd07478 351 ---------AYNQNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTASP----------GGGYTTRSGTSVAAA 404 (455)
T ss_pred ---------EEeCCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEeec----------CCcEEeeCcHHHHHH
Confidence 12233456999999999987 7999999999999999985 458999999999999
Q ss_pred HHHHHHHHHHHhC------CCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCcc
Q 044171 595 HIAGVAALIKQRH------PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAG 659 (813)
Q Consensus 595 ~VAG~aALl~q~~------p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG 659 (813)
||||++|||+|.+ |.|++++||++|++||+++. ...+++++||||
T Consensus 405 ~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~--------------------~~~~pn~~~GyG 455 (455)
T cd07478 405 IVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP--------------------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCC--------------------CCCCCCCCCCCC
Confidence 9999999999965 56799999999999998763 234567899998
No 9
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.9e-45 Score=393.51 Aligned_cols=267 Identities=24% Similarity=0.360 Sum_probs=191.7
Q ss_pred CCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCce--EEEEEchhhhhhc-----CCCC----
Q 044171 145 EGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI--VGAQYFARAAIAY-----GDFN---- 213 (813)
Q Consensus 145 ~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki--~g~~~~~~~~~~~-----~~~~---- 213 (813)
|+|+|||||||||++||||++..|......+ ..+.. +..|+.+ +++++|....... ...+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~-~~~~d--------~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~ 71 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP-GNGID--------DDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEK 71 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccC-CCCcc--------CCCCCccccccCeeccCCcccccccccCccccccc
Confidence 6899999999999999999987543222111 11111 1122222 4556665321100 0000
Q ss_pred --CCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCc
Q 044171 214 --STRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVD 291 (813)
Q Consensus 214 --~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~ 291 (813)
...+...+.+..+|||||||||+|...++ .++.||||+|+|+.+|++.......+++++||+||+++|++
T Consensus 72 ~~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 72 GYGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred cccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCc
Confidence 01122345578999999999999975422 23689999999999999865446778899999999999999
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CCC--------CCCceEEEeecccCccc
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS---ILS--------FSPWITSIAASITDRKY 360 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~--------~~~~vitVgA~~~~~~~ 360 (813)
|||||||..... ....+..+++.+.++|+++|+||||+|..... ++. ..+++|+|||++..
T Consensus 144 IiN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--- 215 (291)
T cd07483 144 VINMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--- 215 (291)
T ss_pred EEEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---
Confidence 999999964322 22467888899999999999999999864321 111 22455555553210
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
.....++.||++|+. +|||+|||.+|+++.+ ++.|..++|||||||||||++
T Consensus 216 ------~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~a 267 (291)
T cd07483 216 ------YENNLVANFSNYGKK------------NVDVFAPGERIYSTTP----------DNEYETDSGTSMAAPVVSGVA 267 (291)
T ss_pred ------CCcccccccCCCCCC------------ceEEEeCCCCeEeccC----------cCCeEeeccHHHHHHHHHHHH
Confidence 000136889999974 3499999999999874 458999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHcccc
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
|||+|++|+|++.|||++|++||.
T Consensus 268 Al~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 268 ALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999984
No 10
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4e-45 Score=384.82 Aligned_cols=244 Identities=26% Similarity=0.319 Sum_probs=199.1
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
+++|+||+|||||+|||.+||+|.+....... .+. .....
T Consensus 6 g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~----------------------------~~~------------~~~~~ 45 (267)
T cd07476 6 GGGDPRITIAILDGPVDRTHPCFRGANLTPLF----------------------------TYA------------AAACQ 45 (267)
T ss_pred cCCCCCeEEEEeCCCcCCCChhhCCCcccccc----------------------------Ccc------------ccCCC
Confidence 78999999999999999999999975321100 000 00123
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQAVEDGVDIISLSVG 298 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~S~G 298 (813)
..|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+ ....++++||+||+++|++|||||||
T Consensus 46 ~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 115 (267)
T cd07476 46 DGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGG 115 (267)
T ss_pred CCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 34678999999999998753 2367999999999999998754 34678999999999999999999999
Q ss_pred CCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecC
Q 044171 299 PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLA 378 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (813)
..... ......+.++++.|.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 116 ~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------- 171 (267)
T cd07476 116 RLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD--------------------- 171 (267)
T ss_pred cCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC---------------------
Confidence 75422 123467888999999999999999999998877788889999999984311
Q ss_pred CCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEE
Q 044171 379 PPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFIL 458 (813)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 458 (813)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccC
Q 044171 459 RMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSR 538 (813)
Q Consensus 459 ~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~ 538 (813)
+.++.||+|
T Consensus 172 -----------------------------------------------------------------------~~~~~~s~~ 180 (267)
T cd07476 172 -----------------------------------------------------------------------GLPLKFSNW 180 (267)
T ss_pred -----------------------------------------------------------------------CCeeeecCC
Confidence 125678999
Q ss_pred CCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCC----CCHHH
Q 044171 539 GPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPK----WSPAA 614 (813)
Q Consensus 539 Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~----~s~~~ 614 (813)
|+.. .||||+|||.+|+++.+ ++.|..++|||||||||||++|||+|++|. ++|++
T Consensus 181 g~~~----------~~~~l~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~ 240 (267)
T cd07476 181 GADY----------RKKGILAPGENILGAAL----------GGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLA 240 (267)
T ss_pred CCCC----------CCceEEecCCCceeecC----------CCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHH
Confidence 9864 47899999999999874 458999999999999999999999999887 89999
Q ss_pred HHHHHHccccccCCC
Q 044171 615 ITSAMMTSAEVTDHS 629 (813)
Q Consensus 615 ik~~L~~TA~~~~~~ 629 (813)
||++|++||.++...
T Consensus 241 vk~~L~~tA~~~~~~ 255 (267)
T cd07476 241 VRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHhCccCCCc
Confidence 999999999988643
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-44 Score=389.37 Aligned_cols=288 Identities=40% Similarity=0.556 Sum_probs=216.1
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCC---CCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFN---STRDYAS 220 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~---~~~~~~~ 220 (813)
|+||+|||||+|||++||+|.+... .++++..+++|........... .......
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------------CCCceeeeeECccCCCCcccccccccccccCC
Confidence 8999999999999999999996431 2334555666554311100000 0001122
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGP 299 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~ 299 (813)
..|..+|||||||+|+|...+ ...+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||.
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 446889999999999988543 23468999999999999998554 788899999999999999999999997
Q ss_pred CCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--CCCCCCceEEEeecccCccccceeeecCCcEEEeeec
Q 044171 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS--ILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGL 377 (813)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
.... ..+.+..+++++.++|+++|+||||+|..... .++..+++|+|||++....
T Consensus 130 ~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------ 186 (295)
T cd07474 130 SVNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------ 186 (295)
T ss_pred CCCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------
Confidence 5432 23567788889999999999999999876544 3667899999998531000
Q ss_pred CCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEE
Q 044171 378 APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFI 457 (813)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 457 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeeccc
Q 044171 458 LRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSS 537 (813)
Q Consensus 458 ~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS 537 (813)
........|++
T Consensus 187 ---------------------------------------------------------------------~~~~~~~~~~s 197 (295)
T cd07474 187 ---------------------------------------------------------------------AEADTVGPSSS 197 (295)
T ss_pred ---------------------------------------------------------------------CCCCceeccCC
Confidence 00011233444
Q ss_pred -CCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHH
Q 044171 538 -RGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616 (813)
Q Consensus 538 -~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik 616 (813)
.|+... +++||||+|||++|++++... ++.|..++|||||||+|||++|||+|++|+|++++||
T Consensus 198 ~~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~ 262 (295)
T cd07474 198 RGPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIK 262 (295)
T ss_pred CCCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 455543 689999999999999998542 2479999999999999999999999999999999999
Q ss_pred HHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCc
Q 044171 617 SAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARA 666 (813)
Q Consensus 617 ~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A 666 (813)
++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 263 ~~L~~tA~~~~~~~~-----------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 263 AALMNTAKPLYDSDG-----------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHhhCcccccCCC-----------------CcCChhccCcceeccccC
Confidence 999999998754332 122445899999999987
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-44 Score=375.58 Aligned_cols=224 Identities=27% Similarity=0.437 Sum_probs=184.3
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
|+|||||||||.+||+|.+.... .+++. .....|.++
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-----------------------------~~~~~--------------~~~~~~~~~ 37 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-----------------------------RLFFA--------------GPGAPAPSA 37 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-----------------------------cccCC--------------CCCCCCCCC
Confidence 78999999999999999864311 00000 012446789
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC----CCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG----GYMADVVAAVDQAVEDGVDIISLSVGPSAV 302 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~ 302 (813)
|||||||||+|.... ..|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 38 HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~- 105 (239)
T cd05561 38 HGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP- 105 (239)
T ss_pred CHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 999999999998531 16999999999999998642 56788999999999999999999999632
Q ss_pred CCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCC
Q 044171 303 PSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPT 381 (813)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (813)
...++++++++.++|++||+||||+|... ..+|+..+++|+||+++.+
T Consensus 106 -------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------ 154 (239)
T cd05561 106 -------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------ 154 (239)
T ss_pred -------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC------------------------
Confidence 25678889999999999999999999753 4567788999999984311
Q ss_pred CCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeC
Q 044171 382 LGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMD 461 (813)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 461 (813)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCC
Q 044171 462 PDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPD 541 (813)
Q Consensus 462 ~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~ 541 (813)
+.++.||++|+.
T Consensus 155 --------------------------------------------------------------------~~~~~~s~~g~~ 166 (239)
T cd05561 155 --------------------------------------------------------------------GRLYREANRGAH 166 (239)
T ss_pred --------------------------------------------------------------------CCccccCCCCCc
Confidence 135678999987
Q ss_pred cCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 044171 542 VNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMT 621 (813)
Q Consensus 542 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~ 621 (813)
. ||+|||++|+++.+ ++.|..++|||||||||||++|||+|++| +++++||++|++
T Consensus 167 ~-------------di~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ 222 (239)
T cd05561 167 V-------------DFAAPGVDVWVAAP----------GGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAA 222 (239)
T ss_pred c-------------eEEccccceecccC----------CCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 6 89999999999763 45899999999999999999999999999 999999999999
Q ss_pred cccccCC
Q 044171 622 SAEVTDH 628 (813)
Q Consensus 622 TA~~~~~ 628 (813)
||+++..
T Consensus 223 ta~~~g~ 229 (239)
T cd05561 223 TAKDLGP 229 (239)
T ss_pred HhhccCC
Confidence 9987753
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-44 Score=379.25 Aligned_cols=246 Identities=31% Similarity=0.414 Sum_probs=197.9
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC-CCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS-PFDA 224 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~-~~d~ 224 (813)
||+||||||||+++||+|..... ..+.++.+.++|.+.. .. ..|.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~----------------------~~~~~i~~~~~~~~~~------------~~~~~~~ 46 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL----------------------FKNLRILGEYDFVDNS------------NNTNYTD 46 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc----------------------ccCCceeeeecCccCC------------CCCCCCC
Confidence 79999999999999999953211 1234677778776541 11 3578
Q ss_pred CCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044171 225 DGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG---GYMADVVAAVDQAVEDGVDIISLSVGPSA 301 (813)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~S~G~~~ 301 (813)
++|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.|++|||||||...
T Consensus 47 ~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 47 DDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 8999999999999853 2368999999999999876432 34557899999999999999999999765
Q ss_pred CCCC--------ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCC---CCCCCCCCCceEEEeecccCccccceeeecCCc
Q 044171 302 VPSG--------PAAFLNALEMELLFATKAGVLVVQAAGNSGPS---SSSILSFSPWITSIAASITDRKYNNTIKLANGH 370 (813)
Q Consensus 302 ~~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 370 (813)
.... .......+.++++.+.++|+++|+||||+|.. ...+|+..+++|+|||++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------- 183 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------- 183 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-------------
Confidence 3321 01123467888999999999999999999987 34567788999999984311
Q ss_pred EEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHh
Q 044171 371 SFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKK 450 (813)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 450 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCC
Q 044171 451 IEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAP 530 (813)
Q Consensus 451 ~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 530 (813)
+
T Consensus 184 -------------------------------------------------------------------------------~ 184 (261)
T cd07493 184 -------------------------------------------------------------------------------G 184 (261)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCC
Q 044171 531 VVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKW 610 (813)
Q Consensus 531 ~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~ 610 (813)
.++.||++||+.+ +++||||+|||.+|++.. .++.|..++|||||||+|||++|||+|++|+|
T Consensus 185 ~~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~l 247 (261)
T cd07493 185 NKASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNW 247 (261)
T ss_pred CCCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCC
Confidence 3578999999986 799999999999999854 24579999999999999999999999999999
Q ss_pred CHHHHHHHHHcccc
Q 044171 611 SPAAITSAMMTSAE 624 (813)
Q Consensus 611 s~~~ik~~L~~TA~ 624 (813)
++.|||++|++||+
T Consensus 248 t~~~i~~~l~~tA~ 261 (261)
T cd07493 248 TNLQIKEAILKSAS 261 (261)
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=4.4e-44 Score=378.77 Aligned_cols=247 Identities=34% Similarity=0.479 Sum_probs=195.2
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
|+||+|||||+|||++||+|.+.... |... ++...+.+ ++.......+.|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~-------~~~~--------------~~~~~~~~---------~d~~~~~~~~~d 50 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG-------WGGG--------------SADHDYNW---------FDPVGNTPLPYD 50 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc-------cCCC--------------Cccccccc---------ccCCCCCCCCCC
Confidence 89999999999999999999975210 0000 00000000 011112245567
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh------------CCCc
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE------------DGVD 291 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~~ 291 (813)
..+|||||||||+|.... +...||||+|+|+.+|+++..++...+++++++|+++ .|++
T Consensus 51 ~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 121 (264)
T cd07481 51 DNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPD 121 (264)
T ss_pred CCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCe
Confidence 889999999999987532 2237999999999999998877888899999999975 7899
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecC
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
|||||||.... ....+..+++.+.++|++||+||||++.... ..|+..+++|+|||++.+
T Consensus 122 Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------- 184 (264)
T cd07481 122 VINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------- 184 (264)
T ss_pred EEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------
Confidence 99999997643 1355677788888999999999999986543 256778899999984311
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
+.++.||++||... +++||||+|||.+|+++.+ ++.|..++|||||||+|||++|||+|++|
T Consensus 185 -~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~~----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p 246 (264)
T cd07481 185 -DVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAVP----------GGGYGSSSGTSMAAPHVAGVAALLWSANP 246 (264)
T ss_pred -CCCccccCCCCCCC-------CCcCceEEECCCCeEEecC----------CCceEeeCcHHHHHHHHHHHHHHHHHhCC
Confidence 13678999999986 6999999999999999984 35889999999999999999999999999
Q ss_pred C--CCHHHHHHHHHcccc
Q 044171 609 K--WSPAAITSAMMTSAE 624 (813)
Q Consensus 609 ~--~s~~~ik~~L~~TA~ 624 (813)
+ ++++|||.+|++||+
T Consensus 247 ~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 247 SLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 9 999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=376.17 Aligned_cols=338 Identities=25% Similarity=0.378 Sum_probs=255.1
Q ss_pred ccCCCCCcEEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHhcCCc---------------eeeEEEe
Q 044171 17 DFLPLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLLHGHS---------------YTKLYSY 81 (813)
Q Consensus 17 ~~~~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~~~~ 81 (813)
+..+...++|||.|++.+. .+.++...++++..|+.-...+..... .+..+..
T Consensus 74 ~i~~~~~~~YiV~f~~~~~------------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i 141 (501)
T KOG1153|consen 74 AIEEALPSRYIVVFKPDAS------------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDI 141 (501)
T ss_pred hhhcccccceEEEeCCCcc------------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhccccccccc
Confidence 3345567899999996543 344555555555555543332222111 2233444
Q ss_pred cc-ceeEEEEEeCHHHHHHHHhcCcCeeEEEeCccceeccCC-----CCcccCCC---------CCCCCCCCCCCCCCCC
Q 044171 82 TH-LLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMH-----TPEFLGIP---------VGVWPTLGGAEFSGEG 146 (813)
Q Consensus 82 ~~-~~~g~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~-----~~~~~~~~---------~~~w~~~~~~~~~G~g 146 (813)
.. +++|+.-.++.+-. ..+++.|-++.++++..++..... ....|++. ...|......-..|+|
T Consensus 142 ~~~~~~~y~~~ft~~~v-~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~g 220 (501)
T KOG1153|consen 142 GGRVFRGYTGYFTGESV-CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKG 220 (501)
T ss_pred ccchhhcccccccccee-eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCC
Confidence 44 78888888888887 999999999999988776543211 11122221 1234433333458999
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
|..+|+||||+.+||||.++. .| |..++ +.....|++|
T Consensus 221 vtaYv~DTGVni~H~dFegRa--------~w------Ga~i~----------------------------~~~~~~D~nG 258 (501)
T KOG1153|consen 221 VTAYVLDTGVNIEHPDFEGRA--------IW------GATIP----------------------------PKDGDEDCNG 258 (501)
T ss_pred eEEEEecccccccccccccce--------ec------ccccC----------------------------CCCcccccCC
Confidence 999999999999999999864 23 21111 0133458999
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC---------CCcEEEEc
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED---------GVDIISLS 296 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~~VIn~S 296 (813)
|||||||+|+++. .|||.+++|+++||++++| +..+++++++|++++. +..|.|||
T Consensus 259 HGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlS 324 (501)
T KOG1153|consen 259 HGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLS 324 (501)
T ss_pred Ccceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEe
Confidence 9999999999984 5999999999999999999 9999999999999986 47899999
Q ss_pred cCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEEEee
Q 044171 297 VGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGI 375 (813)
Q Consensus 297 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 375 (813)
+|+.. +..++.|++.|.+.|+++++||||+..+. .+.|+.+..+|||||++..
T Consensus 325 lGg~~--------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------ 378 (501)
T KOG1153|consen 325 LGGFR--------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------ 378 (501)
T ss_pred cCCcc--------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------------
Confidence 99863 46899999999999999999999998765 4567889999999995411
Q ss_pred ecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceE
Q 044171 376 GLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAG 455 (813)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g 455 (813)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeec
Q 044171 456 FILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASY 535 (813)
Q Consensus 456 ~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~F 535 (813)
+.++.|
T Consensus 379 --------------------------------------------------------------------------D~iA~F 384 (501)
T KOG1153|consen 379 --------------------------------------------------------------------------DTIAFF 384 (501)
T ss_pred --------------------------------------------------------------------------cchhhh
Confidence 248999
Q ss_pred ccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCC------
Q 044171 536 SSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPK------ 609 (813)
Q Consensus 536 SS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~------ 609 (813)
|+||++. ||.|||.+|+|+|.++. ......||||||+|||||++|..+..+|.
T Consensus 385 SN~G~CV-------------diFAPGv~IlSs~iGs~--------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~ 443 (501)
T KOG1153|consen 385 SNWGKCV-------------DIFAPGVNILSSWIGSN--------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFA 443 (501)
T ss_pred cCcccee-------------eeecCchhhhhhhhcCc--------cchheeecccccCcchhhhHHHhhhcCCCChHHhh
Confidence 9999999 89999999999997642 36689999999999999999999998883
Q ss_pred ---CCHHHHHHHHHcccc
Q 044171 610 ---WSPAAITSAMMTSAE 624 (813)
Q Consensus 610 ---~s~~~ik~~L~~TA~ 624 (813)
.+|.++|..+..-..
T Consensus 444 n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 444 NDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hccCChHHhhhhhhcccc
Confidence 378888887776554
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=9.7e-43 Score=379.11 Aligned_cols=220 Identities=27% Similarity=0.340 Sum_probs=164.6
Q ss_pred CCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCC---CHHHHHHHHHHHHhCCCcEEEEccC
Q 044171 222 FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGG---YMADVVAAVDQAVEDGVDIISLSVG 298 (813)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~---~~~~i~~ai~~a~~~g~~VIn~S~G 298 (813)
.|+++|||||||||||+... ...+.||||+|+|+.+|+++...+ ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 36789999999999998432 134689999999999999875432 2356899999999999999999999
Q ss_pred CCCCCCCChhhhhHHHHHHH-HHHhCCcEEEEecCCCCCCCCCC--CC-CCCceEEEeecccCccccceeeecCCcEEEe
Q 044171 299 PSAVPSGPAAFLNALEMELL-FATKAGVLVVQAAGNSGPSSSSI--LS-FSPWITSIAASITDRKYNNTIKLANGHSFSG 374 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~~--~~-~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~ 374 (813)
......... .+.+++. .+.++|+++|+||||+|+...+. |+ ..++||+|||+.........
T Consensus 254 ~~~~~~~~~----~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~----------- 318 (412)
T cd04857 254 EATHWPNSG----RIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE----------- 318 (412)
T ss_pred cCCCCccch----HHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-----------
Confidence 865432111 2233333 34578999999999999866543 33 47899999995422110000
Q ss_pred eecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCce
Q 044171 375 IGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAA 454 (813)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 454 (813)
| .
T Consensus 319 ------------y----------------------~-------------------------------------------- 320 (412)
T cd04857 319 ------------Y----------------------S-------------------------------------------- 320 (412)
T ss_pred ------------c----------------------c--------------------------------------------
Confidence 0 0
Q ss_pred EEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeee
Q 044171 455 GFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVAS 534 (813)
Q Consensus 455 g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~ 534 (813)
. .....+.++.
T Consensus 321 ------~---------------------------------------------------------------~~~~~~~~~~ 331 (412)
T cd04857 321 ------L---------------------------------------------------------------REKLPGNQYT 331 (412)
T ss_pred ------c---------------------------------------------------------------ccccCCcccc
Confidence 0 0001235799
Q ss_pred cccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHH----hCCCC
Q 044171 535 YSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQ----RHPKW 610 (813)
Q Consensus 535 FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~ 610 (813)
||||||+.+ |++||||+|||+.|.|+-. . ....|..|+|||||||||||++|||++ ++|+|
T Consensus 332 fSSrGP~~d-------G~~~pdI~APG~~I~s~p~-~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~ 396 (412)
T cd04857 332 WSSRGPTAD-------GALGVSISAPGGAIASVPN-W-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPY 396 (412)
T ss_pred ccccCCccc-------CCcCceEEeCCCcEEEccc-C-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 999999987 8999999999999988521 1 234789999999999999999999985 57899
Q ss_pred CHHHHHHHHHcccccc
Q 044171 611 SPAAITSAMMTSAEVT 626 (813)
Q Consensus 611 s~~~ik~~L~~TA~~~ 626 (813)
+|.+||++|++||+++
T Consensus 397 tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 397 TPYSVRRALENTAKKL 412 (412)
T ss_pred CHHHHHHHHHHhCccC
Confidence 9999999999999864
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-42 Score=367.94 Aligned_cols=257 Identities=33% Similarity=0.559 Sum_probs=203.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
|+||+|+|||+||+++||+|.+...... .+. +.........|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~~-----------------------------~~~---------~~~~~~~~~~d 42 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRFA-----------------------------DFV---------NTVNGRTTPYD 42 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccccc-----------------------------ccc---------ccccCCCCCCC
Confidence 8999999999999999999997632110 000 00011244557
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC----CCcEEEEccC
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED----GVDIISLSVG 298 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~~VIn~S~G 298 (813)
..+|||||||+|+|..... ...+.|+||+|+|+.+|+++..+ +..+++++||+|+++. +++|||||||
T Consensus 43 ~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g 115 (264)
T cd07487 43 DNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG 115 (264)
T ss_pred CCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccC
Confidence 7899999999999985421 23468999999999999999876 7788999999999998 9999999999
Q ss_pred CCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCccccceeeecCCcEEEeee
Q 044171 299 PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIG 376 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 376 (813)
..... ....+.+.++++++.++|++||+||||++.... ..|+..+++|+|||++.+..
T Consensus 116 ~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------- 175 (264)
T cd07487 116 APPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------- 175 (264)
T ss_pred CCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------
Confidence 76542 224567888899999999999999999998765 56778899999998542210
Q ss_pred cCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEE
Q 044171 377 LAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGF 456 (813)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~ 456 (813)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecc
Q 044171 457 ILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYS 536 (813)
Q Consensus 457 i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FS 536 (813)
....++.||
T Consensus 176 -----------------------------------------------------------------------~~~~~~~~s 184 (264)
T cd07487 176 -----------------------------------------------------------------------HDDGISYFS 184 (264)
T ss_pred -----------------------------------------------------------------------CCccccccc
Confidence 001368899
Q ss_pred cCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHH
Q 044171 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616 (813)
Q Consensus 537 S~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik 616 (813)
++||+.+ +++||||+|||++|+++.+..... ....++.|..++|||||||+|||++|||+|++|.+++.+||
T Consensus 185 ~~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik 256 (264)
T cd07487 185 SRGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVK 256 (264)
T ss_pred cCCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHH
Confidence 9999987 799999999999999986542111 11234589999999999999999999999999999999999
Q ss_pred HHHHcccc
Q 044171 617 SAMMTSAE 624 (813)
Q Consensus 617 ~~L~~TA~ 624 (813)
++|++||+
T Consensus 257 ~~L~~tA~ 264 (264)
T cd07487 257 CILRDTAT 264 (264)
T ss_pred HHHHhhcC
Confidence 99999984
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=5.5e-42 Score=364.59 Aligned_cols=261 Identities=30% Similarity=0.382 Sum_probs=197.6
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCC-CCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHS-FRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGD 211 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~ 211 (813)
+|.. +++|+||+|||||||||++||+|.+.. ...+.+. ...+.+.
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~----------------------~~~~~~~-------- 47 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA----------------------VNGYNFV-------- 47 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc----------------------cCCcccc--------
Confidence 5766 789999999999999999999999862 1111100 0000000
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCC
Q 044171 212 FNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGV 290 (813)
Q Consensus 212 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~ 290 (813)
.+.........|..+|||||||||++..+......|.. ...|+||+|+|+.+|+++..+ ....+++++|+|+++.|+
T Consensus 48 ~~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 48 PNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred cccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 00001113345678999999999999754322111111 245799999999999999765 677889999999999999
Q ss_pred cEEEEccCCCCCCCCChhhhhHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccce
Q 044171 291 DIISLSVGPSAVPSGPAAFLNALEMELLFATKA-------GVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNT 363 (813)
Q Consensus 291 ~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 363 (813)
+|||||||..... .+...+..+++.+.++ |++||+||||++......|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~~----~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGGG----IYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCcc----ccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 9999999975421 1335567777788777 9999999999998877778888999999984311
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIAT 443 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 443 (813)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeee
Q 044171 444 VADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRA 523 (813)
Q Consensus 444 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 523 (813)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCC-cEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHH
Q 044171 524 IYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGS-SIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAAL 602 (813)
Q Consensus 524 ~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 602 (813)
+.++.||++|+.. ||+|||+ .|+++.+.... ...+.|..++|||||||+|||++||
T Consensus 196 ------~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAl 252 (273)
T cd07485 196 ------DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAAL 252 (273)
T ss_pred ------CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHH
Confidence 1356899999876 8999999 99988764311 0234799999999999999999999
Q ss_pred HHHhCCC-CCHHHHHHHHHcc
Q 044171 603 IKQRHPK-WSPAAITSAMMTS 622 (813)
Q Consensus 603 l~q~~p~-~s~~~ik~~L~~T 622 (813)
|+|++|. ++++|||++|++|
T Consensus 253 l~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 253 VLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 9999999999986
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-42 Score=373.20 Aligned_cols=262 Identities=24% Similarity=0.267 Sum_probs=187.6
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
.+|||||||||.+||+|.+.... ...+.. ....+.|.+|
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~~-----------------------------~~~~~~------------~~~~~~d~~g 39 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALAE-----------------------------DDLDSD------------EPGWTADDLG 39 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhcc-----------------------------cccccc------------CCCCcCCCCC
Confidence 37999999999999999975311 000000 0011568899
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-----CCHHHHHHHHHHHHhCC---CcEEEEccC
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-----GYMADVVAAVDQAVEDG---VDIISLSVG 298 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~~VIn~S~G 298 (813)
|||||||||++.... .....|+||+|+|+.+|+++..+ ...+++++||+|+++.+ ++|||||||
T Consensus 40 HGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG 111 (291)
T cd04847 40 HGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLG 111 (291)
T ss_pred ChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecC
Confidence 999999999875421 12357999999999999999863 45678999999999853 499999999
Q ss_pred CCCCCCCChhhhhHHHHHHH-HHHhCCcEEEEecCCCCCCCCC------------CCCCCCceEEEeecccCccccceee
Q 044171 299 PSAVPSGPAAFLNALEMELL-FATKAGVLVVQAAGNSGPSSSS------------ILSFSPWITSIAASITDRKYNNTIK 365 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~~~vitVgA~~~~~~~~~~~~ 365 (813)
........ ....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.....+..
T Consensus 112 ~~~~~~~~--~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~ 189 (291)
T cd04847 112 SPLPIDDG--RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR 189 (291)
T ss_pred CCCCccCC--CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc
Confidence 86543211 1123444443 3568999999999999986543 3566789999999764432100000
Q ss_pred ecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHH
Q 044171 366 LANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVA 445 (813)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 445 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (291)
T cd04847 190 -------------------------------------------------------------------------------- 189 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeee
Q 044171 446 DNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIY 525 (813)
Q Consensus 446 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 525 (813)
.+
T Consensus 190 ---------------------~~--------------------------------------------------------- 191 (291)
T cd04847 190 ---------------------YS--------------------------------------------------------- 191 (291)
T ss_pred ---------------------cc---------------------------------------------------------
Confidence 00
Q ss_pred cCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCC--------CCCCCCCcceeeeccCChhhHHH
Q 044171 526 HGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEG--------DPNLKGRNFALLSGTSMATPHIA 597 (813)
Q Consensus 526 ~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSMAaP~VA 597 (813)
.......+.|||+||..+ +.+||||+|||++|.++....... .....++.|..++||||||||||
T Consensus 192 ~~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Va 264 (291)
T cd04847 192 AVGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAA 264 (291)
T ss_pred ccccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHH
Confidence 000001334999999987 799999999999999865421100 00113458999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 598 GVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 598 G~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
|++|||+|++|+++|++||++|++||+
T Consensus 265 g~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 265 RLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999985
No 20
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.8e-42 Score=364.87 Aligned_cols=160 Identities=28% Similarity=0.358 Sum_probs=120.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhh
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~ 206 (813)
+++.. +|+. +++|+||+||||||||+..|| |..... .+ ++. +..
T Consensus 8 l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~~---------~~---------------~~~----~~~-- 51 (298)
T cd07494 8 LNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESRGY---------QV---------------RVV----LAP-- 51 (298)
T ss_pred cChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcCCc---------cc---------------eee----cCC--
Confidence 44433 5655 899999999999999999888 664321 00 000 000
Q ss_pred hhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH
Q 044171 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV 286 (813)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~ 286 (813)
.......|++||||||||++ .||||+|+|+.+|+++. ..+++++||+||+
T Consensus 52 ---------~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~ 101 (298)
T cd07494 52 ---------GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAI 101 (298)
T ss_pred ---------CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHH
Confidence 01123457889999999864 48999999999999874 4567899999999
Q ss_pred hCCCcEEEEccCCCCCCCC------ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecc
Q 044171 287 EDGVDIISLSVGPSAVPSG------PAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASI 355 (813)
Q Consensus 287 ~~g~~VIn~S~G~~~~~~~------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~ 355 (813)
+++++|||||||....... .....+.+++++++|.++|++||+||||++. .+|+..|+||+|||++
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~ 173 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVF 173 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEe
Confidence 9999999999997543221 0123456889999999999999999999974 5689999999999964
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-41 Score=364.52 Aligned_cols=264 Identities=30% Similarity=0.375 Sum_probs=194.1
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccc----ccccccc-CCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISK----FKGKCTT-GNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
||+|||||||||++||+|.+.....++.+.. .++.... .......+.+++.. .+.......
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------~~~~~~~~~ 66 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV--------------PPGGFCGSG 66 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccc--------------cccccccCC
Confidence 7999999999999999999876443322210 0000000 00000001111100 001111234
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH----------hCCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV----------EDGV 290 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g~ 290 (813)
..+..+|||||||||+|...+ ...+.||||+|+|+.+|+++..++..+++++|++|++ ++++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 456789999999999998542 1346899999999999999887778899999999998 4578
Q ss_pred cEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCC
Q 044171 291 DIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANG 369 (813)
Q Consensus 291 ~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 369 (813)
+|||||||..... ...+.+++..+.++|++||+||||++... ..+|+..+++|+|||++.+
T Consensus 139 ~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 200 (285)
T cd07496 139 KVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------ 200 (285)
T ss_pred eEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC------------
Confidence 9999999975431 35678888899999999999999999876 5677888999999984311
Q ss_pred cEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHH
Q 044171 370 HSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIK 449 (813)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~ 449 (813)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCC
Q 044171 450 KIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQA 529 (813)
Q Consensus 450 ~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 529 (813)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCC-----CCCCCCCcceeeeccCChhhHHHHHHHHHH
Q 044171 530 PVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEG-----DPNLKGRNFALLSGTSMATPHIAGVAALIK 604 (813)
Q Consensus 530 ~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 604 (813)
+.++.||++|+.. ||+|||++|.++....... ........|..++|||||||+|||++|||+
T Consensus 201 ~~~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~ 267 (285)
T cd07496 201 GQRASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMK 267 (285)
T ss_pred CCcccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHH
Confidence 1367899999976 8999999999987543210 111234578999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHcc
Q 044171 605 QRHPKWSPAAITSAMMTS 622 (813)
Q Consensus 605 q~~p~~s~~~ik~~L~~T 622 (813)
|++|+|++++||++|++|
T Consensus 268 ~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 268 SVNPSLTPAQIESLLQST 285 (285)
T ss_pred HhCCCCCHHHHHHHHHhC
Confidence 999999999999999976
No 22
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.7e-41 Score=357.59 Aligned_cols=229 Identities=34% Similarity=0.506 Sum_probs=191.8
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC
Q 044171 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA 219 (813)
Q Consensus 140 ~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 219 (813)
.+++|+||+|||||+||+++||+|.++. ...+++... .
T Consensus 20 ~~~~G~gv~VaViDsGi~~~h~~~~~~~-----------------------------~~~~~~~~~-------------~ 57 (255)
T cd04077 20 DSSTGSGVDVYVLDTGIRTTHVEFGGRA-----------------------------IWGADFVGG-------------D 57 (255)
T ss_pred cCCCCCCcEEEEEcCCCCCCChhhhCCe-----------------------------eeeeecCCC-------------C
Confidence 3699999999999999999999998642 222222221 1
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC-----CCcEE
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED-----GVDII 293 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~~VI 293 (813)
...|..+|||||||||++.. .||||+|+|+.+|+++..+ +..++++++++|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 24578899999999999863 5999999999999999875 7788999999999987 48999
Q ss_pred EEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 294 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|||||... ...+..+++++.++|+++|+||||+|... ...|+..+++|+|||++.+
T Consensus 124 n~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 124 NMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred EeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 99999753 35677888899999999999999999765 4567788999999984311
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
+.+
T Consensus 181 -----------------------------------------------------------------------------~~~ 183 (255)
T cd04077 181 -----------------------------------------------------------------------------DAR 183 (255)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 125
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCH
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~ 612 (813)
+.||++||.. ||+|||.+|.++.... ++.|..++|||||||+|||++|||+|++|++++
T Consensus 184 ~~~S~~g~~~-------------~i~apG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~ 242 (255)
T cd04077 184 ASFSNYGSCV-------------DIFAPGVDILSAWIGS--------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242 (255)
T ss_pred cCcccCCCCC-------------cEEeCCCCeEecccCC--------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 7889999976 8999999999987531 348999999999999999999999999999999
Q ss_pred HHHHHHHHccccc
Q 044171 613 AAITSAMMTSAEV 625 (813)
Q Consensus 613 ~~ik~~L~~TA~~ 625 (813)
++||++|++||++
T Consensus 243 ~~v~~~L~~tA~~ 255 (255)
T cd04077 243 AEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHhhccC
Confidence 9999999999974
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-41 Score=356.28 Aligned_cols=253 Identities=31% Similarity=0.458 Sum_probs=188.7
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
||+|||||+|||++||+|.+.... | .+|..+ .........|..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~-------~----------------------~~~~~~--------~~~~~~~~~d~~ 43 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQ-------W----------------------ADFDEN--------RRISATEVFDAG 43 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCC-------c----------------------eeccCC--------CCCCCCCCCCCC
Confidence 799999999999999999875310 1 111100 001123445788
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSG 305 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~ 305 (813)
+|||||||||+|.... +...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||.....
T Consensus 44 ~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 112 (254)
T cd07490 44 GHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS-- 112 (254)
T ss_pred CcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--
Confidence 9999999999998541 23579999999999999988767888999999999999999999999976432
Q ss_pred ChhhhhHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCCCCC
Q 044171 306 PAAFLNALEMELLFATK-AGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGR 384 (813)
Q Consensus 306 ~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (813)
.+.+..+++.+.+ +|++||+||||+|......|+..+++|+|||++.+.....+..
T Consensus 113 ----~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------- 169 (254)
T cd07490 113 ----EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------- 169 (254)
T ss_pred ----CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-------------------
Confidence 2445555555554 6999999999999887778888999999999754321000000
Q ss_pred ceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCC
Q 044171 385 VYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQ 464 (813)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 464 (813)
+
T Consensus 170 -------------------------~------------------------------------------------------ 170 (254)
T cd07490 170 -------------------------F------------------------------------------------------ 170 (254)
T ss_pred -------------------------C------------------------------------------------------
Confidence 0
Q ss_pred CCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCc
Q 044171 465 DFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNN 544 (813)
Q Consensus 465 ~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~ 544 (813)
.......++.+|....
T Consensus 171 ----------------------------------------------------------------g~~~~~~~~~~~~~~~ 186 (254)
T cd07490 171 ----------------------------------------------------------------GSSGASLVSAPDSPPD 186 (254)
T ss_pred ----------------------------------------------------------------cccccccccCCCCCcc
Confidence 0001122233443321
Q ss_pred ccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 545 ALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 545 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
+..|||++|||.+|+++..... .++.|..++|||||||+|||++|||+|++|++++++||.+|++||+
T Consensus 187 ------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 ------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999653211 3458999999999999999999999999999999999999999984
No 24
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3.3e-41 Score=356.52 Aligned_cols=248 Identities=35% Similarity=0.522 Sum_probs=202.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEE
Q 044171 122 HTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201 (813)
Q Consensus 122 ~~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~ 201 (813)
+....++.+. +|.. + +|+||+|||||+||+++||+|.... +...++
T Consensus 11 w~~~~~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~~----------------------------~~~~~~ 56 (260)
T cd07484 11 WNLDQIGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKVK----------------------------FVLGYD 56 (260)
T ss_pred CCccccChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccCC----------------------------ccccee
Confidence 3344455544 7876 3 9999999999999999999985421 222233
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHH
Q 044171 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVA 280 (813)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ 280 (813)
+.+. ...+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++..+ +...++++
T Consensus 57 ~~~~------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ 116 (260)
T cd07484 57 FVDN------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIAN 116 (260)
T ss_pred ccCC------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHH
Confidence 3221 1235578899999999999874321 3467999999999999998766 77889999
Q ss_pred HHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccc
Q 044171 281 AVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKY 360 (813)
Q Consensus 281 ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~ 360 (813)
+|+++++.|++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 117 ai~~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--- 186 (260)
T cd07484 117 GIRYAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--- 186 (260)
T ss_pred HHHHHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---
Confidence 999999999999999999754 3367888888999999999999999999888889999999999984311
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
+.++.||++|+.. |++|||++|+++.+ .+.|..++|||||||+|||++
T Consensus 187 ---------~~~~~~s~~g~~~-------------~~~apG~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~ 234 (260)
T cd07484 187 ---------DKRASFSNYGKWV-------------DVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVA 234 (260)
T ss_pred ---------CCcCCcCCCCCCc-------------eEEeCCCCcEeecC----------CCCEEEeeeHHHHHHHHHHHH
Confidence 1256788999875 89999999999874 348999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHcccccc
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAEVT 626 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~~~ 626 (813)
|||+|++| +++++||++|++||+++
T Consensus 235 Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 235 ALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999 99999999999999865
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=5.7e-41 Score=361.33 Aligned_cols=277 Identities=29% Similarity=0.360 Sum_probs=201.0
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC
Q 044171 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA 219 (813)
Q Consensus 140 ~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 219 (813)
.|++|+||+|||||+|||++||+|.+..... ....++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~------------------~~~~~~~~~~~~~~~~--------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNK------------------TNLFHRKIVRYDSLSD--------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCc------------------CccCcccEEEeeccCC---------------
Confidence 4799999999999999999999998753200 0122344544433321
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEEcc
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQAVEDGVDIISLSV 297 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~S~ 297 (813)
...|..+|||||||||+|..+.... ...+.||||+|+|+.+|+++..+ ....++..+++++.+.+++||||||
T Consensus 49 ~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 49 TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccC
Confidence 1227899999999999998643210 11468999999999999988765 5566789999999999999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 298 GPSAVPSGPAAFLNALEMELLFAT-K-AGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|..... ....+..++.++. + +|++||+||||+|.... ..|+..+++|+|||++......
T Consensus 124 G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~----------- 187 (293)
T cd04842 124 GSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN----------- 187 (293)
T ss_pred CCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-----------
Confidence 986532 0122333343333 3 79999999999998765 5678899999999976432100
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
.....+.+
T Consensus 194 ------------------------------------------------------------------------~~~~~~~~ 201 (293)
T cd04842 194 ------------------------------------------------------------------------QSDNSDTV 201 (293)
T ss_pred ------------------------------------------------------------------------ccCCCCcc
Confidence 00111357
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC----
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP---- 608 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p---- 608 (813)
+.||++||+.+ +++||||+|||++|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 202 ~~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~ 273 (293)
T cd04842 202 ASFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYY 273 (293)
T ss_pred ccccCcCCCCC-------CCcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999986 7999999999999999975421 00111345799999999999999999999999854
Q ss_pred ----CCCHHHHHHHHHcccc
Q 044171 609 ----KWSPAAITSAMMTSAE 624 (813)
Q Consensus 609 ----~~s~~~ik~~L~~TA~ 624 (813)
.+++.++|++|++||+
T Consensus 274 ~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 274 PTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCcCcCHHHHHHHHHhcCC
Confidence 6667799999999985
No 26
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-41 Score=354.90 Aligned_cols=247 Identities=21% Similarity=0.249 Sum_probs=177.8
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|+... ..|+||+|+|||+|||.+||||.++.....
T Consensus 7 aw~~~~---g~G~gV~VaviDtGid~~Hpdl~~~~~~~~----------------------------------------- 42 (277)
T cd04843 7 AWTKPG---GSGQGVTFVDIEQGWNLNHEDLVGNGITLI----------------------------------------- 42 (277)
T ss_pred HHHhcC---CCCCcEEEEEecCCCCCCChhhcccccccc-----------------------------------------
Confidence 787642 458999999999999999999997532100
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh----C
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE----D 288 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~ 288 (813)
. ...+.|+++|||||||||+|..+. .++.||||+|+|+.+|+++ .++++++|++|++ .
T Consensus 43 ~----~~~~~d~~gHGT~VAGiIaa~~n~---------~G~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~ 104 (277)
T cd04843 43 S----GLTDQADSDHGTAVLGIIVAKDNG---------IGVTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPG 104 (277)
T ss_pred C----CCCCCCCCCCcchhheeeeeecCC---------CceeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCC
Confidence 0 011457889999999999987421 2368999999999999986 2346666777766 3
Q ss_pred CCcEEEEccCCCCCCCC--ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC------------CC-CCCceEEEee
Q 044171 289 GVDIISLSVGPSAVPSG--PAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI------------LS-FSPWITSIAA 353 (813)
Q Consensus 289 g~~VIn~S~G~~~~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~~-~~~~vitVgA 353 (813)
++.+||||||....... ...+.+.+..+++++.++|+++|+||||++...... +. ..+++|+|||
T Consensus 105 ~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA 184 (277)
T cd04843 105 DVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGA 184 (277)
T ss_pred CEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEe
Confidence 56779999997542211 012445677789999999999999999998653211 11 1245666666
Q ss_pred cccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccC
Q 044171 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFD 433 (813)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~ 433 (813)
++.+.
T Consensus 185 ~~~~~--------------------------------------------------------------------------- 189 (277)
T cd04843 185 GSSTT--------------------------------------------------------------------------- 189 (277)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 32100
Q ss_pred CCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeee
Q 044171 434 FENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHA 513 (813)
Q Consensus 434 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 513 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChh
Q 044171 514 RARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMAT 593 (813)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAa 593 (813)
...++.||++|+.. ||+|||++|+++.............+.|..++||||||
T Consensus 190 ---------------~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~Aa 241 (277)
T cd04843 190 ---------------GHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSAS 241 (277)
T ss_pred ---------------CCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhh
Confidence 01268899999976 89999999999986533211112233457899999999
Q ss_pred hHHHHHHHHHHH----h-CCCCCHHHHHHHHHcccc
Q 044171 594 PHIAGVAALIKQ----R-HPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 594 P~VAG~aALl~q----~-~p~~s~~~ik~~L~~TA~ 624 (813)
|||||++|||++ + +|+|+++|||++|++|+.
T Consensus 242 P~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 242 PIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999975 3 499999999999999973
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.7e-41 Score=359.90 Aligned_cols=148 Identities=35% Similarity=0.502 Sum_probs=110.3
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC
Q 044171 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA 219 (813)
Q Consensus 140 ~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 219 (813)
.+++|+||+|||||+|||.+||+|.+.... .++|.+. .
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~-----------------------------~~~~~~~-------------~ 40 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDIT-----------------------------TKSFVGG-------------E 40 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCccc-----------------------------CcccCCC-------------C
Confidence 369999999999999999999999875321 1111111 2
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVG 298 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G 298 (813)
.+.|.++|||||||||+|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2457889999999999987532 2346999999999999998755 67778999999999999999999999
Q ss_pred CCCC------CCCChhhhhHHHHHHHHH---------------HhCCcEEEEecCCCCCCC
Q 044171 299 PSAV------PSGPAAFLNALEMELLFA---------------TKAGVLVVQAAGNSGPSS 338 (813)
Q Consensus 299 ~~~~------~~~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~ 338 (813)
.... +.........++.+.+.+ .++|++||+||||++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 7541 011112233444444444 789999999999998653
No 28
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-40 Score=346.68 Aligned_cols=240 Identities=33% Similarity=0.506 Sum_probs=190.9
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
|+|||||+||+++||+|.+... +...+++.. +...+.|..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~~ 41 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK---------------------------LVPGWNFVS------------NNDPTSDIDG 41 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC---------------------------ccCCccccC------------CCCCCCCCCC
Confidence 6899999999999999997410 011111110 1123457889
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSG 305 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~ 305 (813)
|||||||||+|+..+. ..+.|+||+|+|+.+|+++..+ +..+++.++++|+++.+++|||||||.....
T Consensus 42 HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 111 (242)
T cd07498 42 HGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST-- 111 (242)
T ss_pred CHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC--
Confidence 9999999999985321 3468999999999999998765 6788899999999999999999999975433
Q ss_pred ChhhhhHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCCCCC
Q 044171 306 PAAFLNALEMELLFATK-AGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGR 384 (813)
Q Consensus 306 ~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (813)
..+...++.++..+.+ +|++||+||||+|......++..+++|+|||++..
T Consensus 112 -~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------------------- 163 (242)
T cd07498 112 -ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN--------------------------- 163 (242)
T ss_pred -chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC---------------------------
Confidence 2345778888888988 99999999999998877678889999999984311
Q ss_pred ceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCC
Q 044171 385 VYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQ 464 (813)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 464 (813)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCc
Q 044171 465 DFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNN 544 (813)
Q Consensus 465 ~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~ 544 (813)
+.+++||++||..
T Consensus 164 -----------------------------------------------------------------~~~~~~s~~g~~~-- 176 (242)
T cd07498 164 -----------------------------------------------------------------DARASYSNYGNYV-- 176 (242)
T ss_pred -----------------------------------------------------------------CCccCcCCCCCCe--
Confidence 1257889999986
Q ss_pred ccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 044171 545 ALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTS 622 (813)
Q Consensus 545 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 622 (813)
|++|||+++.++...... .....++.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 177 -----------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 -----------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred -----------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999988543211 111235588999999999999999999999999999999999999976
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.1e-40 Score=345.85 Aligned_cols=252 Identities=33% Similarity=0.457 Sum_probs=189.9
Q ss_pred CCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCC
Q 044171 145 EGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDA 224 (813)
Q Consensus 145 ~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (813)
+||+|||||||||++||+|.+..+...... .+.+....+..+. +. ...++|. .+..++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~-~~~~~~~~~~~~~-----~~-~~~~~~~------------~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEI-PGNGIDDDGNGYV-----DD-IYGWNFV------------NNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccc-cccCcccCCCCcc-----cC-CCccccc------------CCCCCCCCC
Confidence 689999999999999999998643211000 0111111111110 00 0111111 123456788
Q ss_pred CCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 044171 225 DGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVP 303 (813)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~ 303 (813)
.+|||||||||+|..... ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++|||+|||....
T Consensus 63 ~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~- 133 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP- 133 (259)
T ss_pred CCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-
Confidence 999999999999975422 2357999999999999998876 788899999999999999999999997542
Q ss_pred CCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC---CCCCC--CCCceEEEeecccCccccceeeecCCcEEEeeecC
Q 044171 304 SGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS---SSILS--FSPWITSIAASITDRKYNNTIKLANGHSFSGIGLA 378 (813)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (813)
...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 134 ------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------- 186 (259)
T cd07473 134 ------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------- 186 (259)
T ss_pred ------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------
Confidence 36777888899999999999999998762 23443 34778888874311
Q ss_pred CCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEE
Q 044171 379 PPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFIL 458 (813)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 458 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccC
Q 044171 459 RMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSR 538 (813)
Q Consensus 459 ~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~ 538 (813)
+.++.||++
T Consensus 187 -----------------------------------------------------------------------~~~~~~s~~ 195 (259)
T cd07473 187 -----------------------------------------------------------------------DALASFSNY 195 (259)
T ss_pred -----------------------------------------------------------------------CCcCcccCC
Confidence 134668999
Q ss_pred CCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044171 539 GPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSA 618 (813)
Q Consensus 539 Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~ 618 (813)
||.. ||+.|||.++++..+ ++.|..++|||||||+|||++|||+|++|.+++++||++
T Consensus 196 g~~~------------~~~~apG~~~~~~~~----------~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~ 253 (259)
T cd07473 196 GKKT------------VDLAAPGVDILSTSP----------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDA 253 (259)
T ss_pred CCCC------------cEEEeccCCeEeccC----------CCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 8753 499999999999653 458999999999999999999999999999999999999
Q ss_pred HHcccc
Q 044171 619 MMTSAE 624 (813)
Q Consensus 619 L~~TA~ 624 (813)
|++||+
T Consensus 254 L~~tA~ 259 (259)
T cd07473 254 ILSSAD 259 (259)
T ss_pred HHHhCC
Confidence 999984
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=8.1e-40 Score=339.36 Aligned_cols=226 Identities=38% Similarity=0.570 Sum_probs=185.7
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
||+|||||+||+.+||+|.+... ..++|... .. ....|..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~-----------------------------~~~~~~~~----------~~-~~~~~~~ 40 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV-----------------------------GGANFTGD----------DN-NDYQDGN 40 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc-----------------------------CcccccCC----------CC-CCCCCCC
Confidence 79999999999999999987521 11122111 00 2345688
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~ 304 (813)
+|||||||||++.... ..+.|+||+|+|+.+|+++..+ +...+++++++++++.|++|||||||....
T Consensus 41 ~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~-- 109 (229)
T cd07477 41 GHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD-- 109 (229)
T ss_pred CCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC--
Confidence 9999999999997532 1467999999999999998876 677899999999999999999999997532
Q ss_pred CChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCCC
Q 044171 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI--LSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTL 382 (813)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (813)
...+..+++.+.++|+++|+||||++...... |+..+++|+||+++.+
T Consensus 110 -----~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 159 (229)
T cd07477 110 -----SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------- 159 (229)
T ss_pred -----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-------------------------
Confidence 24567788889999999999999999876654 8888999999985311
Q ss_pred CCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCC
Q 044171 383 GRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDP 462 (813)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 462 (813)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCc
Q 044171 463 DQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDV 542 (813)
Q Consensus 463 ~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~ 542 (813)
+.++.||++|+..
T Consensus 160 -------------------------------------------------------------------~~~~~~s~~g~~~ 172 (229)
T cd07477 160 -------------------------------------------------------------------NNRASFSSTGPEV 172 (229)
T ss_pred -------------------------------------------------------------------CCcCCccCCCCCc
Confidence 1246789999875
Q ss_pred CcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 044171 543 NNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTS 622 (813)
Q Consensus 543 ~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 622 (813)
|+.|||++|+++.+ .+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 173 -------------~~~apg~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 -------------ELAAPGVDILSTYP----------NNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -------------eEEeCCCCeEEecC----------CCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 89999999999874 3588999999999999999999999999999999999999976
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-40 Score=341.49 Aligned_cols=159 Identities=23% Similarity=0.242 Sum_probs=119.0
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
+++|+|||||||||++||+|.++.... ++|.... .+.........|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~~-----------------------------~~~~~~~-----~~~~~~~~~~~d 47 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIGG-----------------------------KSFSPYE-----GDGNKVSPYYVS 47 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccccC-----------------------------CCCCCCC-----CCcccCCCCCCC
Confidence 789999999999999999999753211 1111100 000000112246
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-------CCHHHHHHHHHHHHhCCCcEEEEc
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-------GYMADVVAAVDQAVEDGVDIISLS 296 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~~VIn~S 296 (813)
.+||||||||||+ |+||+|+|+.+|+++..+ +....+++||+||+++|+||||||
T Consensus 48 ~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S 109 (247)
T cd07491 48 ADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMS 109 (247)
T ss_pred CCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEee
Confidence 8899999999984 689999999999998744 345689999999999999999999
Q ss_pred cCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-C--CCCCCCceEEEeecc
Q 044171 297 VGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-S--ILSFSPWITSIAASI 355 (813)
Q Consensus 297 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~~~vitVgA~~ 355 (813)
||....... ....+.+.+++++|.++|++||+||||+|.... . .|+..++||+|||++
T Consensus 110 ~g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 110 WTIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 997543211 123578899999999999999999999998754 3 346678999999854
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.3e-40 Score=353.46 Aligned_cols=276 Identities=34% Similarity=0.555 Sum_probs=210.1
Q ss_pred EEEEEeeccCCCCCCCC-CCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 148 VIGFIDTGINPEHPSFA-SHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 148 ~VaVIDtGid~~Hp~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
+|||||||||++||+|. ++. ...++.+.+.|.++. .......|..+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 47 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------------IWSKVPGGYNFVDGN---------PNPSPSDDDNG 47 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------------EEEEEEEEEETTTTB---------STTTSSSTSSS
T ss_pred CEEEEcCCcCCCChhHccCCc------------------------ccccccceeeccCCC---------CCcCccccCCC
Confidence 69999999999999999 432 012345566665541 11244567889
Q ss_pred CccccccccccCC-CccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH-hCCCcEEEEccCCCCCCC
Q 044171 227 HGSHTASTAAGNH-RVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV-EDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 227 HGThVAGiiag~~-~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~~VIn~S~G~~~~~~ 304 (813)
|||||||||++.. .. .....|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||......
T Consensus 48 HGT~va~ii~~~~~~~--------~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~ 119 (282)
T PF00082_consen 48 HGTHVAGIIAGNGGNN--------GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPP 119 (282)
T ss_dssp HHHHHHHHHHHTTSSS--------SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSS
T ss_pred ccchhhhhcccccccc--------ccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccc
Confidence 9999999999985 11 1235899999999999998876677788999999999 899999999998732111
Q ss_pred CChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCC
Q 044171 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPT 381 (813)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (813)
.....+.+..+++.+.++|+++|+||||+|.... ..|+..+++|+||+++..
T Consensus 120 -~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------------ 174 (282)
T PF00082_consen 120 -DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------------ 174 (282)
T ss_dssp -HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT------------------------
T ss_pred -ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc------------------------
Confidence 1234456777888999999999999999987654 356667888999874311
Q ss_pred CCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeC
Q 044171 382 LGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMD 461 (813)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 461 (813)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCC
Q 044171 462 PDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPD 541 (813)
Q Consensus 462 ~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~ 541 (813)
+.++.||++|+.
T Consensus 175 --------------------------------------------------------------------~~~~~~s~~g~~ 186 (282)
T PF00082_consen 175 --------------------------------------------------------------------GQPASYSNYGGP 186 (282)
T ss_dssp --------------------------------------------------------------------SSBSTTSSBSTT
T ss_pred --------------------------------------------------------------------cccccccccccc
Confidence 125778999766
Q ss_pred cCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 044171 542 VNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMT 621 (813)
Q Consensus 542 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~ 621 (813)
.. .+++||||+|||.+|.++++... ...|..++|||||||+|||++|||+|++|++++.+||.+|++
T Consensus 187 ~~------~~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ 253 (282)
T PF00082_consen 187 SD------DGRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLIN 253 (282)
T ss_dssp ET------TCTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred cc------ccccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 53 27999999999999998885421 135888999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 622 SAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 622 TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
||.++.... .....+.||||++|+.+|++
T Consensus 254 ta~~~~~~~------------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 254 TADDLGSTN------------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HSBESSETT------------------SSSSHHHHTTSBE-HHHHHH
T ss_pred hCcccCcCC------------------CCCCCCCccCChhCHHHHhC
Confidence 999876111 12334578999999999873
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.9e-39 Score=348.33 Aligned_cols=154 Identities=30% Similarity=0.466 Sum_probs=110.5
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
.|+|||||||||++||+|.+......... .....+ ... ......+.....|..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~-------~~~~~~-------------~~~-------~~~~~~~~~~~~d~~ 53 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNL-------VPKGGY-------------DGK-------EAGETGDINDIVDKL 53 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccccc-------ccCCCc-------------CCc-------cccccCCCCcCCCCC
Confidence 38999999999999999997532111000 000000 000 000011123455788
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~ 304 (813)
||||||||+|+|... ..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999998742 34999999999999998876 48889999999999999999999999754332
Q ss_pred C----ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 044171 305 G----PAAFLNALEMELLFATKAGVLVVQAAGNSGPSS 338 (813)
Q Consensus 305 ~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 338 (813)
. .....+.+..+++.+.++|++||+||||+|...
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 1 122345678888889999999999999998653
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-38 Score=328.20 Aligned_cols=149 Identities=27% Similarity=0.325 Sum_probs=115.5
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
||+|||||||||++||+|.+...... .+..+ +...+.....|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~~-----------------------------~~~~~-------~~~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDGE-----------------------------VTIDL-------EIIVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccccc-----------------------------ccccc-------ccccCCCCCCCCC
Confidence 79999999999999999997632110 00000 0001123445788
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~ 304 (813)
||||||||||++. +|+++|+.+|+++..+ +..+++++||+|++++|++|||||||.....
T Consensus 45 gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~- 105 (222)
T cd07492 45 GHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR- 105 (222)
T ss_pred CcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-
Confidence 9999999999764 5899999999998876 7788899999999999999999999975422
Q ss_pred CChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeec
Q 044171 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354 (813)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~ 354 (813)
....+..+++++.++|+++|+||||++.... .|+..++||+||+.
T Consensus 106 ----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~ 150 (222)
T cd07492 106 ----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSD 150 (222)
T ss_pred ----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEec
Confidence 2356778888899999999999999987543 37788899999974
No 35
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-38 Score=337.40 Aligned_cols=323 Identities=22% Similarity=0.346 Sum_probs=238.2
Q ss_pred EeccceeEEEEEeCHHHH----HHHHhcCcCeeEEEeCccceeccCCC-----C-------cccC------CC-----CC
Q 044171 80 SYTHLLSGFAIHIESEEA----VSTLQNAKGVRIIHEDIKMEKLTMHT-----P-------EFLG------IP-----VG 132 (813)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~----~~~L~~~p~V~~v~~~~~~~~~~~~~-----~-------~~~~------~~-----~~ 132 (813)
.|-.-|.-+-++-..++. ++.|...|+|+.+.|.+++.+...+. + .+++ .+ ..
T Consensus 92 ~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~ 171 (1033)
T KOG4266|consen 92 KYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTL 171 (1033)
T ss_pred cCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCcccccccc
Confidence 454455555555443332 58999999999999988775421100 0 0000 00 00
Q ss_pred CCC-----------------CCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCc
Q 044171 133 VWP-----------------TLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSK 195 (813)
Q Consensus 133 ~w~-----------------~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~k 195 (813)
.|. .++..|++|++|+|||.|||+..+||.|+.-- ....|..
T Consensus 172 n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvK-----ERTNWTN---------------- 230 (1033)
T KOG4266|consen 172 NWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVK-----ERTNWTN---------------- 230 (1033)
T ss_pred ccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccchh-----hhcCCcC----------------
Confidence 111 13345999999999999999999999999631 1112311
Q ss_pred eEEEEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CC
Q 044171 196 IVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GY 274 (813)
Q Consensus 196 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~ 274 (813)
+ ..-.|..||||.|||+|||.. ...|.||+++|+++|||.+.. .+
T Consensus 231 ---------E-------------~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSY 276 (1033)
T KOG4266|consen 231 ---------E-------------DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSY 276 (1033)
T ss_pred ---------c-------------cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeeh
Confidence 0 233467899999999999984 347999999999999999876 88
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCC--CceEEEe
Q 044171 275 MADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFS--PWITSIA 352 (813)
Q Consensus 275 ~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--~~vitVg 352 (813)
.+.++.|+.||+...+||+|+|+|++. +...++-+-+.++...+|++|.|+||+|+-..+..+++ ..||.||
T Consensus 277 TSWFLDAFNYAI~~kidvLNLSIGGPD------fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVG 350 (1033)
T KOG4266|consen 277 TSWFLDAFNYAIATKIDVLNLSIGGPD------FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVG 350 (1033)
T ss_pred hhHHHHHHHHHHhhhcceEeeccCCcc------cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeec
Confidence 999999999999999999999999864 34456666777788999999999999999877655433 3455555
Q ss_pred ecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeecc
Q 044171 353 ASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSF 432 (813)
Q Consensus 353 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~ 432 (813)
..+
T Consensus 351 GId----------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 351 GID----------------------------------------------------------------------------- 353 (1033)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 311
Q ss_pred CCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeee
Q 044171 433 DFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFH 512 (813)
Q Consensus 433 ~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 512 (813)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCCh
Q 044171 513 ARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592 (813)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMA 592 (813)
-.+.++.|||||-+... .+..-||+||||++.|..|..+.. ..+...+||||.|
T Consensus 354 ---------------fdD~IA~FSSRGMtTWE-LP~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVa 407 (1033)
T KOG4266|consen 354 ---------------FDDHIASFSSRGMTTWE-LPHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVA 407 (1033)
T ss_pred ---------------ccchhhhhccCCcceee-cCCcccccCCceEeeccccccCcc----------cccchhccCCccc
Confidence 01358999999976542 233448999999999999987753 2367899999999
Q ss_pred hhHHHHHHHHHHH----hCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 593 TPHIAGVAALIKQ----RHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 593 aP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
+|.|||+++||.+ +.--++|+.+|++|+..|.+++.... +.||+|++|+.++++
T Consensus 408 SPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~NM----------------------fEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 408 SPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPNM----------------------FEQGAGKLDLLESYQ 465 (1033)
T ss_pred chhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCch----------------------hhccCcchhHHHHHH
Confidence 9999999999976 33346899999999999998864432 589999999998874
No 36
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.6e-38 Score=341.21 Aligned_cols=249 Identities=24% Similarity=0.266 Sum_probs=175.4
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|+. +++|+||+|+|||||||++||+|.+..... ..++|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~~---------------------------~~~~~~~~------- 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDPE---------------------------ASYDFNDN------- 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhccccc---------------------------ccccccCC-------
Confidence 5655 799999999999999999999998753210 01111110
Q ss_pred CCCCCCCCC--CCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCC
Q 044171 213 NSTRDYASP--FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGV 290 (813)
Q Consensus 213 ~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~ 290 (813)
.....+ .|.++|||||||||+|..... ....||||+|+|+.+|+++.. ........++.++.+ .+
T Consensus 73 ---~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 139 (297)
T cd04059 73 ---DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YI 139 (297)
T ss_pred ---CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-cccHHHHHHHhcccC-Cc
Confidence 000112 278899999999999985321 135799999999999998764 223344555655544 46
Q ss_pred cEEEEccCCCCCCCCChhhhhHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----CCCCCCceEEEeecccCcccc
Q 044171 291 DIISLSVGPSAVPSGPAAFLNALEMELLFATK-----AGVLVVQAAGNSGPSSSS----ILSFSPWITSIAASITDRKYN 361 (813)
Q Consensus 291 ~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~~~vitVgA~~~~~~~~ 361 (813)
+|||||||..............+..++.++.. +|++||+||||+|..... .+...+++|+|||++.+
T Consensus 140 ~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---- 215 (297)
T cd04059 140 DIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---- 215 (297)
T ss_pred eEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC----
Confidence 99999999764331111112233344444433 799999999999973221 22456788999885311
Q ss_pred ceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhH
Q 044171 362 NTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATI 441 (813)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~ 441 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCe
Q 044171 442 ATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGR 521 (813)
Q Consensus 442 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 521 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCc-------EEeccCCCCCCCCCCCCCcceeeeccCChhh
Q 044171 522 RAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSS-------IWAAWSPSSEGDPNLKGRNFALLSGTSMATP 594 (813)
Q Consensus 522 ~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 594 (813)
+.++.||++|+.. +++|||.. |+++.... ....|..++|||||||
T Consensus 216 --------g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 216 --------GVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred --------CCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 1356788888876 78888877 77665431 1246789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 595 HIAGVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 595 ~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
+|||++|||+|++|+|++.|||++|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.5e-37 Score=328.27 Aligned_cols=246 Identities=33% Similarity=0.435 Sum_probs=186.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCC
Q 044171 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPF 222 (813)
Q Consensus 143 ~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 222 (813)
+|+||+|||||+||+.+||+|.+....... + . ...........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~----~-------------------------~--------~~~~~~~~~~~ 43 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASY----Y-------------------------V--------AVNDAGYASNG 43 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccc----c-------------------------c--------ccccccCCCCC
Confidence 699999999999999999999986421100 0 0 00000112345
Q ss_pred CCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044171 223 DADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQAVEDGVDIISLSVGPS 300 (813)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~S~G~~ 300 (813)
|.++|||||||||+|.... ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||..
T Consensus 44 ~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~ 114 (267)
T cd04848 44 DGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN 114 (267)
T ss_pred CCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC
Confidence 6889999999999998532 3468999999999999998764 5566789999999999999999999986
Q ss_pred CCCCCC--------hhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC---------CCCCCceEEEeecccCccccce
Q 044171 301 AVPSGP--------AAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI---------LSFSPWITSIAASITDRKYNNT 363 (813)
Q Consensus 301 ~~~~~~--------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~~~vitVgA~~~~~~~~~~ 363 (813)
...... ......+..++..+.++|+++|+||||++...... ++..+++|+||+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~----- 189 (267)
T cd04848 115 PAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG----- 189 (267)
T ss_pred CcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-----
Confidence 533210 12456677788899999999999999998654332 23457788888754221
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIAT 443 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 443 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeee
Q 044171 444 VADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRA 523 (813)
Q Consensus 444 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 523 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCeeee--cccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHH
Q 044171 524 IYHGQAPVVAS--YSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAA 601 (813)
Q Consensus 524 ~~~~~~~~~s~--FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aA 601 (813)
.... ||++|+... .++++|||.+|+++.+. .+..|..++|||||||+|||++|
T Consensus 190 -------~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~A 244 (267)
T cd04848 190 -------TIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAA 244 (267)
T ss_pred -------Ccccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHH
Confidence 1122 477776542 33799999999998753 13478899999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHcccc
Q 044171 602 LIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 602 Ll~q~~p~~s~~~ik~~L~~TA~ 624 (813)
||+|++|++++++||++|++||+
T Consensus 245 l~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 245 LLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999985
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-36 Score=334.58 Aligned_cols=359 Identities=22% Similarity=0.298 Sum_probs=229.7
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG---GYMADVVAAVDQAVEDGVDIISLSVGPS 300 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~S~G~~ 300 (813)
..-||||||||++|+.... ....||||+|+|+++++.+..- .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3469999999999996432 2457999999999999977632 3344689999999999999999999987
Q ss_pred CCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCC---CCCceEEEeecccCccccceeeecCCcEEEeeec
Q 044171 301 AVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILS---FSPWITSIAASITDRKYNNTIKLANGHSFSGIGL 377 (813)
Q Consensus 301 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
...+... +.++.+-+.+.++|+++|.||||+|+.-.++++ ....+|.|||.-.......
T Consensus 381 a~~pn~G---RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a--------------- 442 (1304)
T KOG1114|consen 381 AHLPNSG---RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA--------------- 442 (1304)
T ss_pred CCCCCcc---hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh---------------
Confidence 7665433 333333344558899999999999998766654 3457888888321110000
Q ss_pred CCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEE
Q 044171 378 APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFI 457 (813)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 457 (813)
T Consensus 443 -------------------------------------------------------------------------------- 442 (1304)
T KOG1114|consen 443 -------------------------------------------------------------------------------- 442 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeeccc
Q 044171 458 LRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSS 537 (813)
Q Consensus 458 ~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS 537 (813)
.|. ...+..+....+||
T Consensus 443 ------------------------------------~y~---------------------------~~e~vp~~~YtWsS 459 (1304)
T KOG1114|consen 443 ------------------------------------EYS---------------------------VREPVPSNPYTWSS 459 (1304)
T ss_pred ------------------------------------hhh---------------------------hhccCCCCcccccc
Confidence 000 00011123677899
Q ss_pred CCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHH----hCCCCCHH
Q 044171 538 RGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQ----RHPKWSPA 613 (813)
Q Consensus 538 ~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~s~~ 613 (813)
|||+.| |.+--.|+|||+.|.|-- .. .-..-..|.|||||+|+++|.+|||++ .+-.|||.
T Consensus 460 RgP~~D-------G~lGVsi~APggAiAsVP-~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpy 524 (1304)
T KOG1114|consen 460 RGPCLD-------GDLGVSISAPGGAIASVP-QY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPY 524 (1304)
T ss_pred CCCCcC-------CCcceEEecCCccccCCc-hh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHH
Confidence 999998 889999999999987642 11 122457899999999999999999866 56789999
Q ss_pred HHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCCeeeecchhhHHHhh-ccCCCCCc
Q 044171 614 AITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFL-CAVPGVDD 692 (813)
Q Consensus 614 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~lv~~~~~~~~~~~~-~~~~~~~~ 692 (813)
.||.+|++||.+++.. .++.||.|++++.+|.+--.-.+..+..-+.|+ ..++.--.
T Consensus 525 sVrrAlenTa~~l~~i----------------------d~faqG~GmlqVdkAyEyL~q~~~~f~~~l~f~~v~VgN~~s 582 (1304)
T KOG1114|consen 525 SVRRALENTATKLGDI----------------------DSFAQGQGMLQVDKAYEYLAQSDFSFPNALGFINVNVGNSCS 582 (1304)
T ss_pred HHHHHHHhcccccCcc----------------------chhccCcceeehhHHHHHHHHhhhcCCccceeEEEeeccccc
Confidence 9999999999988532 246899999999999863111111122222221 01110001
Q ss_pred cceeeecccCccCCCCCCCCCCCCCcEEEeccCccEEEEEEE----E-ecCC--CCeeEEEEEeCCCCcEEEEecCeEEE
Q 044171 693 DYVRRVTGYGCPTENQGWCSDLNTPSITISNLVGSRKVIRRV----R-NVSS--ANETYTVTVKEPSGVKVSVSPQVFKI 765 (813)
Q Consensus 693 ~~i~~~~~~~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~~tv----~-N~~~--~~~ty~~~~~~~~g~~v~~~~~~~~v 765 (813)
+-|..+.+..|. .| ..+++-| . +..+ +...|++.........+--.|+.+-+
T Consensus 583 rGIyLRep~~~~-----------~p----------~e~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l 641 (1304)
T KOG1114|consen 583 RGIYLREPTQVC-----------SP----------SEHTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML 641 (1304)
T ss_pred cceEecCCcccC-----------Cc----------cccceeccccccCccccccccccceeeEeeecCCcceeCchhhee
Confidence 112222111111 11 1111111 0 1111 12333333322222223334666666
Q ss_pred ecCcEEEEEEEEEEecCCCCeEE----EEEEEEeCCcceEEEeEEEEEe
Q 044171 766 RGLASRELKIVLKATNSTRAYSF----GAMVLQGNNNHIIRIPIAVYVS 810 (813)
Q Consensus 766 ~~g~~~~~~vt~~~~~~~~~~~~----G~i~~~~~~~~~l~~P~~~~~~ 810 (813)
.++.|.|.|++++.....+..+ ||-+-.++-++.+|||+.|..+
T Consensus 642 -~~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 642 -ANQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred -ccCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 7889999999999987765554 4444445668899999987644
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-32 Score=285.37 Aligned_cols=117 Identities=20% Similarity=0.124 Sum_probs=84.3
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHH--HhCCCcEEEEccC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQA--VEDGVDIISLSVG 298 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~~VIn~S~G 298 (813)
..|+++|||||||||||.. |++|+++|+..++.. ...+.+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 3478999999999999973 567999998755522 2233466777787 6689999999999
Q ss_pred CCCCCCCC--hhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CCCCCCCCceEEEeecc
Q 044171 299 PSAVPSGP--AAFLNALEMELLFATKA-GVLVVQAAGNSGPSS-----SSILSFSPWITSIAASI 355 (813)
Q Consensus 299 ~~~~~~~~--~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~~~vitVgA~~ 355 (813)
........ ......+..+++.+.++ |+++|+||||+|... ...++.++++|+|||++
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 76433200 01123566777777666 999999999999743 22356678999999965
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=5.3e-30 Score=266.86 Aligned_cols=122 Identities=38% Similarity=0.549 Sum_probs=100.2
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHH-hCCCcEEEEcc
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAV-EDGVDIISLSV 297 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~~VIn~S~ 297 (813)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ .....+++++++++ +.+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34567899999999999985422 126999999999999988766 67788999999999 89999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CCCCCCCceEEEeecc
Q 044171 298 GPSAVPSGPAAFLNALEMELLFATKA-GVLVVQAAGNSGPSSS---SILSFSPWITSIAASI 355 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~ 355 (813)
|..... ....+..++.++.++ |+++|+||||.+.... ..++..+++|+||+++
T Consensus 110 g~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 110 GGPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred CCCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 986432 234567777777777 9999999999998776 4678899999999854
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.4e-23 Score=237.34 Aligned_cols=147 Identities=37% Similarity=0.564 Sum_probs=113.0
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC-
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA- 219 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~- 219 (813)
+++|+|++|+|||+||+..||+|.+..... ++|.+. ...
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~~-----------------------------~~~~~~-----------~~~~ 177 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVAG-----------------------------GDFVDG-----------DPEP 177 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhcccccc-----------------------------cccccC-----------CCCC
Confidence 689999999999999999999999864211 111111 001
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCC-C-CCHHHHHHHHHHHHhCC--CcEEEE
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTF-G-GYMADVVAAVDQAVEDG--VDIISL 295 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~~VIn~ 295 (813)
...|.++|||||+|++++.... +...+.|++|+++++.++++... + +..++++.+++++++.+ +++|||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 2468899999999999984210 01236799999999999999976 5 77788899999999999 999999
Q ss_pred ccCCCCCCCCChhhhhHHHHHHHHHHhCC-cEEEEecCCCCCCC
Q 044171 296 SVGPSAVPSGPAAFLNALEMELLFATKAG-VLVVQAAGNSGPSS 338 (813)
Q Consensus 296 S~G~~~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~ 338 (813)
|+|.. .. ......+..++..+...| +++|+|+||.+...
T Consensus 251 s~g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 251 SLGGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred cCCCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 99975 11 123466777888888777 99999999998765
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.9e-21 Score=196.82 Aligned_cols=155 Identities=23% Similarity=0.376 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. |++||+|++||+|.||||-||||+.+.. .+ ..|+|..
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~nyn------------ae---------------asydfss-------- 193 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSNYN------------AE---------------ASYDFSS-------- 193 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcccC------------ce---------------eeccccc--------
Confidence 5555 8999999999999999999999997521 11 1223321
Q ss_pred CCCCCCCCCC--C--CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh-
Q 044171 213 NSTRDYASPF--D--ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE- 287 (813)
Q Consensus 213 ~~~~~~~~~~--d--~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~- 287 (813)
| .+++.|+ | .+.|||.|||-+++..+++.. -.|||.+.++..+|+++. -+..|+++|-..-.+
T Consensus 194 n--dpfpyprytddwfnshgtrcagev~aardngic--------gvgvaydskvagirmldq--pymtdlieansmghep 261 (629)
T KOG3526|consen 194 N--DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEP 261 (629)
T ss_pred C--CCCCCCcccchhhhccCccccceeeeeccCCce--------eeeeeeccccceeeecCC--chhhhhhhhcccCCCC
Confidence 1 1112222 2 579999999987766544321 159999999999999986 466677665433332
Q ss_pred CCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHh-----CCcEEEEecCCCCCCC
Q 044171 288 DGVDIISLSVGPSAVPSGPAAFLNALEMELLFATK-----AGVLVVQAAGNSGPSS 338 (813)
Q Consensus 288 ~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~ 338 (813)
..++|.+.|||.......-+...+..-+|+.+-++ .|-+.|.|+|..|...
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~d 317 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDD 317 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCcc
Confidence 35789999999654321101112222333333333 4679999999988653
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=8.9e-17 Score=177.12 Aligned_cols=103 Identities=29% Similarity=0.367 Sum_probs=83.4
Q ss_pred cccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEE
Q 044171 252 YASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVED---GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVV 328 (813)
Q Consensus 252 ~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV 328 (813)
.+.||||+|+|+.+++.+.. ..+++.++.+++.+ +++|||||||....... ..+.+.++.++.+|..+||+||
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEEE
Confidence 46899999999999997642 34677888888887 99999999998653311 3456788999999999999999
Q ss_pred EecCCCCCCCC-----------CCCCCCCceEEEeecccCc
Q 044171 329 QAAGNSGPSSS-----------SILSFSPWITSIAASITDR 358 (813)
Q Consensus 329 ~AAGN~g~~~~-----------~~~~~~~~vitVgA~~~~~ 358 (813)
+||||+|.... .+|+.+|+|++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997643 3578899999999987553
No 44
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=99.35 E-value=9.1e-12 Score=113.46 Aligned_cols=87 Identities=15% Similarity=0.262 Sum_probs=63.9
Q ss_pred EEeccCccEEEEEEEEecCCCCeeEEEEEeC--------CC----------Cc-EEEEecCeEEEecCcEEEEEEEEEEe
Q 044171 720 TISNLVGSRKVIRRVRNVSSANETYTVTVKE--------PS----------GV-KVSVSPQVFKIRGLASRELKIVLKAT 780 (813)
Q Consensus 720 ~~~~~~~~~~~~~tv~N~~~~~~ty~~~~~~--------~~----------g~-~v~~~~~~~~v~~g~~~~~~vt~~~~ 780 (813)
+|.+.....+++++|+|.|+++.+|++++.. .. .+ .+.+++.+|||+||++++|+|+|++|
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 4455556688899999999999999999872 01 11 67888999999999999999999998
Q ss_pred c----CCCCeEEEEEEEEeCCcc-eEEEeEE
Q 044171 781 N----STRAYSFGAMVLQGNNNH-IIRIPIA 806 (813)
Q Consensus 781 ~----~~~~~~~G~i~~~~~~~~-~l~~P~~ 806 (813)
+ ..+++++|||+|+++++. .|+|||+
T Consensus 82 ~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 82 SGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 8 457899999999998776 9999996
No 45
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.73 E-value=5.8e-08 Score=83.08 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=55.1
Q ss_pred EEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHh---cCCceeeEEEeccceeEEEEEeCHHHHHHHH
Q 044171 25 VFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLL---HGHSYTKLYSYTHLLSGFAIHIESEEAVSTL 101 (813)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~L 101 (813)
+|||.|+++.... .........+..++.+.. .....++.+.|...||||+++++.+++ ++|
T Consensus 1 ~YIV~~k~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i-~~L 64 (82)
T PF05922_consen 1 RYIVVFKDDASAA---------------SSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEI-EKL 64 (82)
T ss_dssp EEEEEE-TTSTHH---------------CHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHH-HHH
T ss_pred CEEEEECCCCCcc---------------hhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHH-HHH
Confidence 6999999986522 123334444444444333 334678899999999999999999999 999
Q ss_pred hcCcCeeEEEeCccceec
Q 044171 102 QNAKGVRIIHEDIKMEKL 119 (813)
Q Consensus 102 ~~~p~V~~v~~~~~~~~~ 119 (813)
+++|+|++|+||..++++
T Consensus 65 ~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 65 RKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HTSTTEEEEEEECEEEE-
T ss_pred HcCCCeEEEEeCceEecC
Confidence 999999999999988763
No 46
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.63 E-value=2.3e-07 Score=88.46 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=73.0
Q ss_pred CCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHH
Q 044171 414 ELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLL 493 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~ 493 (813)
.++...+++|||+||.| |.|.+.+|..+++.+||+++|++|+..+... . .......+|.+++ +.+++..|+
T Consensus 39 ~d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~-~-~~~~~~~iP~v~I-s~~dG~~L~ 109 (143)
T cd02133 39 EDFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIP-G-TLGEAVFIPVVFI-SKEDGEALK 109 (143)
T ss_pred hccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCccc-c-cCCCCCeEeEEEe-cHHHHHHHH
Confidence 34556679999999988 5688999999999999999999998762211 1 1111346888887 778999999
Q ss_pred HHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCC
Q 044171 494 EYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPD 541 (813)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~ 541 (813)
+++++ . ..+.|... .. ....+.++.||||||+
T Consensus 110 ~~l~~-~------~~i~~~~~--------~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 110 AALES-S------KKLTFNTK--------KE-KATNPDLADFSSRGPW 141 (143)
T ss_pred HHHhC-C------CeEEEEec--------cc-cccCCccccccCcCCC
Confidence 99876 1 12232221 11 2344669999999996
No 47
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.57 E-value=6.8e-07 Score=83.33 Aligned_cols=118 Identities=27% Similarity=0.471 Sum_probs=86.1
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCch-hHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDA-TIA 442 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~-~~~ 442 (813)
+.++|++++.|+++.+... ..+++++..... .......|. ...+...+++||||+|.+ +.+ .+.
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~------~~~~~~~C~-~~~~~~~~v~GkIVlc~~------~~~~~~~ 66 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS------GDVDASLCL-PGSLDPSKVKGKIVLCDR------GGNTSRV 66 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC------CCCccccCC-CCCCChhhccccEEEEeC------CCCccHH
Confidence 5788999999999997654 456666533211 113456785 344556789999999988 445 788
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcC
Q 044171 443 TVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHT 500 (813)
Q Consensus 443 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~ 500 (813)
.|..+++++||.|+|++++... ..........+|.+.+ ..+++..|++|+++..
T Consensus 67 ~k~~~~~~~GA~gvI~~~~~~~---~~~~~~~~~~iP~v~I-~~~~g~~l~~y~~~~~ 120 (126)
T cd02120 67 AKGDAVKAAGGAGMILANDPTD---GLDVVADAHVLPAVHV-DYEDGTAILSYINSTS 120 (126)
T ss_pred HHHHHHHHcCCcEEEEEecCCC---CceecccccccceEEE-CHHHHHHHHHHHHcCC
Confidence 9999999999999999998752 1111222467999998 6689999999998753
No 48
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.1e-06 Score=98.15 Aligned_cols=159 Identities=22% Similarity=0.298 Sum_probs=97.3
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+++.|+|+|.|+...||++.... . ..+.+++... -
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~----~-----------------------~~~s~d~~~~------~ 67 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNY----D-----------------------PLGSYDVNRH------D 67 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCccccccc----C-----------------------cceeEeeecC------C
Confidence 5665 799999999999999999999999752 1 1222222211 0
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh-CCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE-DGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~ 291 (813)
+...+-.+....+.|||-|++-.+...+.. .-..|+++++++..++++.. ...+...+...... ..++
T Consensus 68 ~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~d 136 (431)
T KOG3525|consen 68 NDPEPRCDGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHID 136 (431)
T ss_pred CCcccccCCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeee---ecccceecccccCCCCCce
Confidence 111111222235899999999998875221 12369999999999999864 22233333222222 3478
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHH-----hCCcEEEEecCCCCCCCC
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFAT-----KAGVLVVQAAGNSGPSSS 339 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~ 339 (813)
+-..|||......--+.-......++..+. .+|-+.|+|.||.|....
T Consensus 137 i~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 137 IYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred eecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 999999965422100111223333333333 568899999999887544
No 49
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.1e-05 Score=96.76 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=62.6
Q ss_pred ccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCCCC-CCChhhhhHHHHHHHHHHhCCcEEEEe
Q 044171 253 ASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGV-DIISLSVGPSAVP-SGPAAFLNALEMELLFATKAGVLVVQA 330 (813)
Q Consensus 253 ~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-~VIn~S~G~~~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV~A 330 (813)
.+-+||+|+|..+-. .. ........|+.+....=. -+|-.||+....- .....+.+.++.....|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 457999999988865 21 222233333333222111 3344566652211 122235677788888899999999999
Q ss_pred cCCCCCCCCC--------CCCCCCceEEEee
Q 044171 331 AGNSGPSSSS--------ILSFSPWITSIAA 353 (813)
Q Consensus 331 AGN~g~~~~~--------~~~~~~~vitVgA 353 (813)
+|.+|....+ .|+.+|+|.+||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999876542 4678999999997
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.09 E-value=1.4e-05 Score=72.64 Aligned_cols=83 Identities=16% Similarity=0.265 Sum_probs=63.3
Q ss_pred ccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCC-CCccccccCCcceEEEccc
Q 044171 408 ESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFS-PNKFKDMALDVPGIILNNM 486 (813)
Q Consensus 408 ~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~~~ip~~~i~~~ 486 (813)
..|. ..++...+++|||+|+.| |.|+|.+|..+|+++||.++|+||+...... +.........||.++| +.
T Consensus 31 ~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s~ 102 (120)
T cd02129 31 VLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-SY 102 (120)
T ss_pred CCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-eH
Confidence 5676 455666779999999999 7899999999999999999999998762111 1111224567899997 67
Q ss_pred chhHHHHHHHhh
Q 044171 487 QSSMDLLEYYNS 498 (813)
Q Consensus 487 ~~g~~~~~~~~~ 498 (813)
++|+.|++.+..
T Consensus 103 ~dG~~i~~~l~~ 114 (120)
T cd02129 103 KDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHhcc
Confidence 888888887653
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.03 E-value=1.7e-05 Score=70.55 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCccccccCCcceEEEcccchhHH
Q 044171 413 PELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKFKDMALDVPGIILNNMQSSMD 491 (813)
Q Consensus 413 ~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~~~~~~~ip~~~i~~~~~g~~ 491 (813)
...+...+++||||||.| |.|++.+|+.+++++||.|+|++|..... ............||.+++ +.++++.
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 456677889999999988 78999999999999999999999922211 122233456678999999 7888999
Q ss_pred HHHHH
Q 044171 492 LLEYY 496 (813)
Q Consensus 492 ~~~~~ 496 (813)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 98875
No 52
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.02 E-value=1.5e-05 Score=74.49 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=58.3
Q ss_pred CcCcccccceEEEEeeccCCCCCchh-----HHHHHHHHHhcCceEEEEEeCC--CCCCCCCccccc-cCCcceEEEccc
Q 044171 415 LFIPALVRGKLIICTYSFDFENDDAT-----IATVADNIKKIEAAGFILRMDP--DQDFSPNKFKDM-ALDVPGIILNNM 486 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~--~~~~~~~~~~~~-~~~ip~~~i~~~ 486 (813)
++...+++|||+|++| |.|. |.+|..+|+++||+++|+||+. .+...+...... ...||.+++ +.
T Consensus 49 d~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~ 121 (139)
T cd04817 49 SYICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DR 121 (139)
T ss_pred cccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eH
Confidence 4555678999999999 5677 9999999999999999999997 322222212222 457999998 67
Q ss_pred chhHHHHHHHhh
Q 044171 487 QSSMDLLEYYNS 498 (813)
Q Consensus 487 ~~g~~~~~~~~~ 498 (813)
++|+.|+..+..
T Consensus 122 ~dG~~L~~~l~~ 133 (139)
T cd04817 122 ADGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHHhcC
Confidence 788889887653
No 53
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.93 E-value=0.00011 Score=67.98 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=60.4
Q ss_pred ccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCC-CCCCCCCccccccCCcceEEEccc
Q 044171 408 ESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDP-DQDFSPNKFKDMALDVPGIILNNM 486 (813)
Q Consensus 408 ~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~-~~~~~~~~~~~~~~~ip~~~i~~~ 486 (813)
..|.. .++ +.+++|||+|+.| |.|.+.+|..+++++||.++|+||+. .+...+.........||.+++ +.
T Consensus 32 ~gC~~-~~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s~ 102 (122)
T cd02130 32 LGCDA-ADY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-SQ 102 (122)
T ss_pred CCCCc-ccC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-cH
Confidence 35653 222 2468999999998 67899999999999999999999987 322222222223456888887 67
Q ss_pred chhHHHHHHHhhc
Q 044171 487 QSSMDLLEYYNSH 499 (813)
Q Consensus 487 ~~g~~~~~~~~~~ 499 (813)
++|+.|+..+...
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999887655
No 54
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.91 E-value=4.2e-05 Score=70.74 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=63.3
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc--cccCCcceEEEc
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK--DMALDVPGIILN 484 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~--~~~~~ip~~~i~ 484 (813)
...|.. ..+...+++|||+||.| |.|.+.+|..+++++||+++|++|+........... .....+|.+++
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 367864 34555679999999998 678899999999999999999999876221111111 13456898887
Q ss_pred ccchhHHHHHHHhhc
Q 044171 485 NMQSSMDLLEYYNSH 499 (813)
Q Consensus 485 ~~~~g~~~~~~~~~~ 499 (813)
+..+++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 668999999988655
No 55
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.78 E-value=0.00011 Score=67.23 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=62.6
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCC-CCccc----cccCCcceE
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFS-PNKFK----DMALDVPGI 481 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~----~~~~~ip~~ 481 (813)
.+.|.... ...+++|||+|++| |.|+|.+|..+|+++||.++|+||+...... ...+. .....||.+
T Consensus 21 ~~gC~~~~--~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELR--NIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCC--CccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 35687433 24568999999998 7899999999999999999999998652111 11111 233468988
Q ss_pred EEcccchhHHHHHHHhhcC
Q 044171 482 ILNNMQSSMDLLEYYNSHT 500 (813)
Q Consensus 482 ~i~~~~~g~~~~~~~~~~~ 500 (813)
++ +..+|+.|++.+..+.
T Consensus 93 ~I-s~~dG~~L~~~l~~g~ 110 (118)
T cd02127 93 FL-LGKNGYMIRKTLERLG 110 (118)
T ss_pred Ee-cHHHHHHHHHHHHcCC
Confidence 87 6778899988877654
No 56
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.76 E-value=0.00014 Score=68.38 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred cccCCCCCCc-CcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCcc-ccccCCcceEEEc
Q 044171 407 LESCQYPELF-IPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKF-KDMALDVPGIILN 484 (813)
Q Consensus 407 ~~~c~~~~~~-~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~~~ip~~~i~ 484 (813)
.+.|...... ...+.+|+|+|+.| |.|+|.+|..+|+++||.++|+||+.........+ ......+|.++|
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I- 116 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI- 116 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE-
Confidence 4678755542 34578999999998 78999999999999999999999987511011111 122346887776
Q ss_pred ccchhHHHHHHHhhc
Q 044171 485 NMQSSMDLLEYYNSH 499 (813)
Q Consensus 485 ~~~~g~~~~~~~~~~ 499 (813)
+..+|+.|+.++..+
T Consensus 117 s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 TNPKGMEILELLERG 131 (138)
T ss_pred cHHHHHHHHHHHHcC
Confidence 668999999988654
No 57
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.73 E-value=0.00015 Score=67.19 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=62.6
Q ss_pred cccCCCCCCcC-cc----cccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCcc--------cc
Q 044171 407 LESCQYPELFI-PA----LVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKF--------KD 473 (813)
Q Consensus 407 ~~~c~~~~~~~-~~----~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~--------~~ 473 (813)
.+.|....... +. ...++|+|++| |.|+|.+|+.+|+++||+++|++|+.+.+...+.. ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 45787665433 22 37889999998 78999999999999999999999987632211110 11
Q ss_pred ccCCcceEEEcccchhHHHHHHHhhc
Q 044171 474 MALDVPGIILNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 474 ~~~~ip~~~i~~~~~g~~~~~~~~~~ 499 (813)
....||.+++ +..+|+.|+..+..+
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcC
Confidence 2346888888 668899999887654
No 58
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.72 E-value=9.9e-05 Score=68.51 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=61.7
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCC---CC-c--ccc---ccCC
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFS---PN-K--FKD---MALD 477 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~-~--~~~---~~~~ 477 (813)
...|.... ....++|||+|++| |.|+|.+|..+|+++||.++|++|+...... .+ . ... ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 35686432 25568999999999 7899999999999999999999987653210 11 1 111 2457
Q ss_pred cceEEEcccchhHHHHHHHhhc
Q 044171 478 VPGIILNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 478 ip~~~i~~~~~g~~~~~~~~~~ 499 (813)
||.+++ +..+|+.|++++..+
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhC
Confidence 899887 678899999888754
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.72 E-value=0.00012 Score=66.71 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=61.6
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCcc--ccccCCcceEEE
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKF--KDMALDVPGIIL 483 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~--~~~~~~ip~~~i 483 (813)
.+.|... +..+++|||+|+.| |.|+|.+|+.+++++||+++|++|+.... ...+.. ......||.+++
T Consensus 27 ~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~I 97 (117)
T cd04813 27 TDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFT 97 (117)
T ss_pred CCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEE
Confidence 4678644 45778999999998 78999999999999999999999987621 111111 123456899888
Q ss_pred cccchhHHHHHHHhhc
Q 044171 484 NNMQSSMDLLEYYNSH 499 (813)
Q Consensus 484 ~~~~~g~~~~~~~~~~ 499 (813)
+.++++.|..+....
T Consensus 98 -s~~~g~~L~~l~~~~ 112 (117)
T cd04813 98 -SRTSYHLLSSLLPKS 112 (117)
T ss_pred -cHHHHHHHHHhcccc
Confidence 678888888876543
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.69 E-value=0.00017 Score=67.05 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEccc
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNM 486 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~ 486 (813)
.+.|....... .+++|||+|++| |.|.+.+|..+++++||+++|+||+........ ......+|.+.+ .
T Consensus 41 ~~gC~~~~~~~-~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~--~~~~~~~~~~~~--~ 109 (129)
T cd02124 41 DDACQPLPDDT-PDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQV--GSDADSIIAAVT--P 109 (129)
T ss_pred cccCcCCCccc-ccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCccccc--CCCCcceeeEEe--H
Confidence 46787554322 368999999998 679999999999999999999999876322211 222334565554 8
Q ss_pred chhHHHHHHHhhc
Q 044171 487 QSSMDLLEYYNSH 499 (813)
Q Consensus 487 ~~g~~~~~~~~~~ 499 (813)
.+|+.|++.+..+
T Consensus 110 ~~G~~l~~~l~~G 122 (129)
T cd02124 110 EDGEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999887644
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.68 E-value=0.00016 Score=68.32 Aligned_cols=81 Identities=10% Similarity=0.208 Sum_probs=60.9
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc----cccCCcceEE
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK----DMALDVPGII 482 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~----~~~~~ip~~~ 482 (813)
.+.|.... .+++|||+|+.| |.|+|.+|..+++++||+++|+||+.... ..+... .....||.++
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~-~~~~~~~~~~~~~~~IP~v~ 116 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEEL-YKMVCEDNDTSLNISIPVVM 116 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcc-cccccCCCCCCCCCcEeEEE
Confidence 35687543 368999999998 78999999999999999999999987521 222111 1135789776
Q ss_pred EcccchhHHHHHHHhhc
Q 044171 483 LNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 483 i~~~~~g~~~~~~~~~~ 499 (813)
| +..+|+.|++++...
T Consensus 117 I-s~~~G~~L~~~l~~g 132 (139)
T cd02132 117 I-PQSAGDALNKSLDQG 132 (139)
T ss_pred e-cHHHHHHHHHHHHcC
Confidence 6 778999999988654
No 62
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.67 E-value=0.00015 Score=69.64 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=63.8
Q ss_pred cccCCCCCCc--CcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCcccc---ccCCcceE
Q 044171 407 LESCQYPELF--IPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKD---MALDVPGI 481 (813)
Q Consensus 407 ~~~c~~~~~~--~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~---~~~~ip~~ 481 (813)
.+.|...... ......|||+|+.| |.|+|.+|+.+|+++||.++|++|+.......+.... ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 3567644432 33678999999998 7899999999999999999999998753222222111 24579999
Q ss_pred EEcccchhHHHHHHHhhc
Q 044171 482 ILNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 482 ~i~~~~~g~~~~~~~~~~ 499 (813)
++ +.++|+.|..++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 98 678889998888755
No 63
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.62 E-value=0.00022 Score=65.58 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=61.2
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc--cccCCcceEEEc
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK--DMALDVPGIILN 484 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~--~~~~~ip~~~i~ 484 (813)
...|.+... ..+++|||+||.| +.|++.+|..+++++||.++|++++.... ....+. .....+|.+++
T Consensus 27 ~~~C~~~~~--~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~-~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 27 TDGCTAFTN--AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGG-APITMGGDDPDITIPAVMI- 96 (118)
T ss_pred ccccCCCCc--CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCC-cceeccCCCCCCEEeEEEe-
Confidence 457865443 3459999999987 56889999999999999999999987621 111111 12346898887
Q ss_pred ccchhHHHHHHHhhc
Q 044171 485 NMQSSMDLLEYYNSH 499 (813)
Q Consensus 485 ~~~~g~~~~~~~~~~ 499 (813)
+.+++..|+.|++..
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 778899999998754
No 64
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.51 E-value=0.0004 Score=64.41 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=62.6
Q ss_pred cccCCCCC-CcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc---cccCCcceEE
Q 044171 407 LESCQYPE-LFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK---DMALDVPGII 482 (813)
Q Consensus 407 ~~~c~~~~-~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~---~~~~~ip~~~ 482 (813)
...|.... .+...+++|||+||.+ +.|.+.+|..+++++||+|+|++++........... .....+|.++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~ 103 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVG 103 (126)
T ss_pred eEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEE
Confidence 34575322 2556779999999987 568899999999999999999999875211111111 2345789888
Q ss_pred EcccchhHHHHHHHhhc
Q 044171 483 LNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 483 i~~~~~g~~~~~~~~~~ 499 (813)
+ +.++++.|+.++.+.
T Consensus 104 i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 104 I-SYADGEALLSLLEAG 119 (126)
T ss_pred e-CHHHHHHHHHHHhcC
Confidence 8 779999999998754
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.48 E-value=0.0014 Score=61.02 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=57.5
Q ss_pred CcCcccccceEEEEeeccCCCCCch--hHHHHHHHHHhcCceEEEEEeCCCCCCCCCc---c-ccccCCcceEEEcccch
Q 044171 415 LFIPALVRGKLIICTYSFDFENDDA--TIATVADNIKKIEAAGFILRMDPDQDFSPNK---F-KDMALDVPGIILNNMQS 488 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~---~-~~~~~~ip~~~i~~~~~ 488 (813)
++...+++|||+++.+ +.+ ++..|+.+++++||+++|++|+..+...... . ......||.+.+ +.++
T Consensus 37 d~~~~~v~GkIvlv~~------g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~ed 109 (127)
T cd04819 37 DFDGLDLEGKIAVVKR------DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGED 109 (127)
T ss_pred HcCCCCCCCeEEEEEc------CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHH
Confidence 4445679999999998 445 7889999999999999999987653322111 1 122356999987 7788
Q ss_pred hHHHHHHHhhc
Q 044171 489 SMDLLEYYNSH 499 (813)
Q Consensus 489 g~~~~~~~~~~ 499 (813)
+..|...++.+
T Consensus 110 g~~L~~~l~~g 120 (127)
T cd04819 110 GLRLARVAERN 120 (127)
T ss_pred HHHHHHHHhcC
Confidence 99998887653
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.78 E-value=0.042 Score=48.79 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=63.5
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCcceEEEe
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIP 804 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~~l~~P 804 (813)
+.....+++|+|.|..+..|++.......-.+++++..=.|+||++.++.|+|.++... +.+++.|.+.-. +..+.+|
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~-g~~~~~l~i~~e-~~~~~i~ 96 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPL-GDYEGSLVITTE-GGSFEIP 96 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCC-ceEEEEEEEEEC-CeEEEEE
Confidence 44566778999999999999987654234467777777789999999999999976543 457899999865 4578888
Q ss_pred EEEEE
Q 044171 805 IAVYV 809 (813)
Q Consensus 805 ~~~~~ 809 (813)
.-..+
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 76553
No 67
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=96.67 E-value=0.016 Score=53.16 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=53.0
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeC----CCC--------------cE------EEEecCeEEEecCcEEEEEEEEEEe
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKE----PSG--------------VK------VSVSPQVFKIRGLASRELKIVLKAT 780 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~----~~g--------------~~------v~~~~~~~~v~~g~~~~~~vt~~~~ 780 (813)
+.++++.++|+|.++++.+|.+.... ..| +. +++ |..++|+||++++++++|+.|
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcC
Confidence 56788999999999999999987542 111 11 233 456999999999999999999
Q ss_pred cCC-CCeEEEEEEEEe
Q 044171 781 NST-RAYSFGAMVLQG 795 (813)
Q Consensus 781 ~~~-~~~~~G~i~~~~ 795 (813)
... .+.+-|-|.|..
T Consensus 105 ~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 105 KKAFDGIILGGIYFSE 120 (121)
T ss_pred CCCcCCEEEeeEEEEe
Confidence 863 556668888763
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=96.59 E-value=0.013 Score=49.27 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=38.4
Q ss_pred CccEEEEEEEEecCCCC-eeEEEEEeCCCCcEEEEecCeE-EEecCcEEEEEEEEEEecCCC
Q 044171 725 VGSRKVIRRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVF-KIRGLASRELKIVLKATNSTR 784 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~-~v~~g~~~~~~vt~~~~~~~~ 784 (813)
+++.+++++|+|.|..+ ...++++..|.|-++..++.++ .|+||++++++++|++|....
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 34677888999999765 4588888889998877777766 689999999999999998753
No 69
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=95.77 E-value=0.066 Score=49.04 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=41.1
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCC
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNST 783 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~ 783 (813)
-.++++|.|.+.++.+|++++..++|+++......++|+||+++++.|.+.+|...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 34677999999999999999998889999665689999999999999999998864
No 70
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=95.55 E-value=0.042 Score=51.58 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=55.1
Q ss_pred CcCcccccceEEEEeeccCCCCCchhHHHH-------HHHHHhcCceEEEEEeCCCC----CCCCCccc-cccCCcceEE
Q 044171 415 LFIPALVRGKLIICTYSFDFENDDATIATV-------ADNIKKIEAAGFILRMDPDQ----DFSPNKFK-DMALDVPGII 482 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~-------~~~~~~~Ga~g~i~~n~~~~----~~~~~~~~-~~~~~ip~~~ 482 (813)
.+...+++||||++.++.+.......+..| ...++++||.++|++|.... ...+.... .....||.+.
T Consensus 32 ~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 32 AAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred hcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 445668999999998843211111166666 68999999999999996431 11232222 2335699999
Q ss_pred EcccchhHHHHHHHhhc
Q 044171 483 LNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 483 i~~~~~g~~~~~~~~~~ 499 (813)
+ +.+++..|...+...
T Consensus 112 i-s~ed~~~L~r~l~~g 127 (134)
T cd04815 112 I-SVEDADMLERLAARG 127 (134)
T ss_pred e-chhcHHHHHHHHhCC
Confidence 7 677888887776644
No 71
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=94.80 E-value=0.1 Score=49.11 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCcCcccccceEEEEeeccCCC------CCc------hhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 414 ELFIPALVRGKLIICTYSFDFE------NDD------ATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~~~------~g~------~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.++...+++||||++.++.... .+. ..+..|..+++++||.|+|++++..
T Consensus 39 dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 39 DDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred hhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 4677788999999998853210 011 1577899999999999999999875
No 72
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=94.56 E-value=0.046 Score=53.66 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=35.6
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
..+++|||+|+.+ |.|.+.+|+.+|+++||+|+|+|++..
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 4578999999998 567889999999999999999999864
No 73
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.07 E-value=0.29 Score=45.81 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=38.2
Q ss_pred CCcCcccccceEEEEeeccCCCCC------chhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 414 ELFIPALVRGKLIICTYSFDFEND------DATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~~~~g------~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.++...+++|||||+.++.....+ ...+..|..+|.++||.++|++++..
T Consensus 41 ~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 41 DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 456677899999999985321111 12477899999999999999999875
No 74
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.07 E-value=0.098 Score=49.85 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCcCcccccceEEEEeeccC------------CCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 414 ELFIPALVRGKLIICTYSFD------------FENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~------------~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.++...+++|||||+.++.. .....|++..|..+|.+.||+++|+|++..
T Consensus 39 ~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 39 DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45667789999999987521 011236788999999999999999999876
No 75
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=93.28 E-value=0.66 Score=43.21 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=52.3
Q ss_pred EEEEEEecCCCC-eeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEe
Q 044171 730 VIRRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQG 795 (813)
Q Consensus 730 ~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~ 795 (813)
+.+.|.|..+.. +..+++...-.+.++--.|..+++.|++.+++..+|++.+...++++|+|++..
T Consensus 73 LDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 73 LDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 344567776532 445555555567888888999999999999999999999999999999999864
No 76
>COG1470 Predicted membrane protein [Function unknown]
Probab=93.05 E-value=1.1 Score=49.66 Aligned_cols=59 Identities=8% Similarity=0.217 Sum_probs=49.4
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEe-CCCCcEEEEe-----cCeEEEecCcEEEEEEEEEEecCC
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVK-EPSGVKVSVS-----PQVFKIRGLASRELKIVLKATNST 783 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~-~~~g~~v~~~-----~~~~~v~~g~~~~~~vt~~~~~~~ 783 (813)
..+..|+++|.|.|..+.+|.++.. .|+|-+..|. -+++.|.||++++|+|.+.++...
T Consensus 283 ~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na 347 (513)
T COG1470 283 STTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNA 347 (513)
T ss_pred CCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCC
Confidence 3466888999999999999999998 7887665553 237899999999999999998765
No 77
>COG1470 Predicted membrane protein [Function unknown]
Probab=92.45 E-value=0.73 Score=50.88 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=54.9
Q ss_pred CccEEEEEEEEecCCCCee-EEEEEeCCCCcEEEEecCeE-EEecCcEEEEEEEEEEecCC-CCeEEEEEEEEe
Q 044171 725 VGSRKVIRRVRNVSSANET-YTVTVKEPSGVKVSVSPQVF-KIRGLASRELKIVLKATNST-RAYSFGAMVLQG 795 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~~~~~-~v~~g~~~~~~vt~~~~~~~-~~~~~G~i~~~~ 795 (813)
+..+++...|.|.|+.+.| -++++..|.|-++++++.++ .|+||+++++++|+++|..+ .+-|.=.|+-++
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 3457788899999987644 67888899999999999877 56899999999999999875 233434444443
No 78
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=92.34 E-value=0.18 Score=47.51 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=33.8
Q ss_pred ccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 419 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.+++|||+|+.. |....-.|+.+|+..||.|+|+|.++.
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 569999999988 445567899999999999999999875
No 79
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=91.78 E-value=1.5 Score=37.85 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=43.8
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCc
Q 044171 726 GSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNN 798 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~ 798 (813)
.+..+.++++|.|....++++.-.. .-.-.|.+++|+||++.++.+.+. ....||+ |+++..++
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~----y~~~~~~~~~v~ag~~~~~~w~l~---~s~gwYD--l~v~~~~~ 81 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNA----YGGGGPWTYTVAAGQTVSLTWPLA---ASGGWYD--LTVTGPNG 81 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCC----cCCCCCEEEEECCCCEEEEEEeec---CCCCcEE--EEEEcCCC
Confidence 3457888999999999988887421 111246789999999988887762 2346775 55554443
No 80
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=90.82 E-value=1.1 Score=50.50 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=48.8
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecC
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
..+++.|.|.++++.+|++++...++++++..++.++|+||+++++.|++.++..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechh
Confidence 4567799999999999999999888999988656899999999999999999854
No 81
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=90.81 E-value=0.35 Score=49.15 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=34.6
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
..+++|||||+.+ |.+...+|+.+|+.+||+|+|+|++..
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5679999999987 455667899999999999999999875
No 82
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=89.85 E-value=3 Score=38.26 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=49.0
Q ss_pred cEEEEEEEEecCCCCeeEEEEEeC---CCC----cEEEEecCeEEEecCcEEEEEEEEEEec-CCCCeEEEEEEEEe
Q 044171 727 SRKVIRRVRNVSSANETYTVTVKE---PSG----VKVSVSPQVFKIRGLASRELKIVLKATN-STRAYSFGAMVLQG 795 (813)
Q Consensus 727 ~~~~~~tv~N~~~~~~ty~~~~~~---~~g----~~v~~~~~~~~v~~g~~~~~~vt~~~~~-~~~~~~~G~i~~~~ 795 (813)
....+++|+|.++.+..+++.+.. ... -.+-++|..++++||+++.|.| +..+. ..+....-+|.++.
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 345567999999988888887764 111 1577899999999999999999 76443 23444456777774
No 83
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=88.39 E-value=1.4 Score=48.88 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=53.0
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-C--CCCccccccCCcceEEEcccchhHHHHH
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-F--SPNKFKDMALDVPGIILNNMQSSMDLLE 494 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~--~~~~~~~~~~~ip~~~i~~~~~g~~~~~ 494 (813)
....+||+++..| |+|.|.+|+..|+.+||.++++.|+.... . .+.........||..++ +.++++.+..
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi-~~~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMI-SYSDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEE-EhhhHHHHHh
Confidence 4568999999998 89999999999999999999999985310 1 12223445678999988 4556666655
Q ss_pred H
Q 044171 495 Y 495 (813)
Q Consensus 495 ~ 495 (813)
.
T Consensus 164 ~ 164 (541)
T KOG2442|consen 164 S 164 (541)
T ss_pred h
Confidence 3
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=84.89 E-value=3.6 Score=36.65 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=41.5
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecC
Q 044171 726 GSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
......++|+|.++....|.+....+. ...+.|..-.|.||++.++.|++.....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~--~y~v~P~~G~i~p~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPN--RYRVKPSYGIIEPGESVEITITFQPFDF 72 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TT--TEEEESSEEEE-TTEEEEEEEEE-SSST
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCc--eEEecCCCEEECCCCEEEEEEEEEeccc
Confidence 345566799999999999999988776 4567799999999999999999988543
No 85
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=84.24 E-value=6.9 Score=33.96 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=39.8
Q ss_pred CccEEEEEEEEecCCCC-eeEEEEEeCCCCcEEEEecCeE-EEecCcEEEEEEEEEEecCCCCeEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVF-KIRGLASRELKIVLKATNSTRAYSFGAMVL 793 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~-~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~ 793 (813)
+...+++++|+|.|... ..+++.+... |..+ ....+ .|+||++.++++++.++. .+.+.=.+.+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~g~~~~v~~~~~~~~--~G~~~i~~~i 83 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAPGESETVTFTWTPPS--PGSYTIRVVI 83 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-TTEEEEEEEEEE-SS---CEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCCCcEEEEEEEEEeCC--CCeEEEEEEE
Confidence 45678889999999864 5566666543 3343 33345 779999999999999982 2344434444
No 86
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=83.79 E-value=4.6 Score=34.08 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=36.5
Q ss_pred EEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCcceEE
Q 044171 755 KVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIR 802 (813)
Q Consensus 755 ~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~~l~ 802 (813)
.|+++|..++|+.|++..|++++++....+ ...+.|++++....+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV---TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc---cceEEEEECCCcEEE
Confidence 578899999999999999999976654432 688999988776666
No 87
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=2.5 Score=45.65 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=50.0
Q ss_pred ccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCccccccCCcceEEEcccchhHHHHHHHh
Q 044171 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKFKDMALDVPGIILNNMQSSMDLLEYYN 497 (813)
Q Consensus 419 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~ 497 (813)
......++|+.| |.|+|.+|+.+|+.+|.+++|+||+.... ..-+........++.+++ +...|+.+..|..
T Consensus 76 ~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~v-s~~~ge~l~~~~~ 148 (348)
T KOG4628|consen 76 TRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFV-SVFSGELLSSYAG 148 (348)
T ss_pred CCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEE-eeehHHHHHHhhc
Confidence 344567889988 67999999999999999999999987622 111222444556676666 4455666666543
No 88
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=81.92 E-value=3.4 Score=39.73 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=35.1
Q ss_pred CcCcccccceEEEEeeccC-CCC-------Cc-----hhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 415 LFIPALVRGKLIICTYSFD-FEN-------DD-----ATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~-~~~-------g~-----~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
++...+++||||++..+.- +.. +. .....|.+.+...||.|+|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 5667889999999886421 110 10 1334689999999999999998765
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=80.43 E-value=5.6 Score=29.43 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=27.3
Q ss_pred EEEEecCCCCeeEEEEEeCCCC-cEEEEecCeEEEecCcEEEEEEEE
Q 044171 732 RRVRNVSSANETYTVTVKEPSG-VKVSVSPQVFKIRGLASRELKIVL 777 (813)
Q Consensus 732 ~tv~N~~~~~~ty~~~~~~~~g-~~v~~~~~~~~v~~g~~~~~~vt~ 777 (813)
++++|.|+.+...+-.. ..=| ..++ .+.=.++||++..+.|++
T Consensus 2 F~~~N~g~~~L~I~~v~-tsCgCt~~~--~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQ-TSCGCTTAE--YSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEee-EccCCEEee--CCcceECCCCEEEEEEEC
Confidence 47899998776544221 1122 2333 344569999999999874
No 90
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=76.07 E-value=20 Score=36.87 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=47.1
Q ss_pred cEEEEEEEEecCCCCeeEEEEEeC---C---CC----------cEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEE
Q 044171 727 SRKVIRRVRNVSSANETYTVTVKE---P---SG----------VKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGA 790 (813)
Q Consensus 727 ~~~~~~tv~N~~~~~~ty~~~~~~---~---~g----------~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~ 790 (813)
.....++|.|.|++...+++.+.. | .+ -.+-++|..|+|+||+++.|.|.-.-+..+..+ =+
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IRli~lg~~~kE~~--YR 109 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVRVISLQAPEREEA--WR 109 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEEEEEcCCCCcEEE--EE
Confidence 344457999999998888887542 1 11 147789999999999999999876555433333 36
Q ss_pred EEEEe
Q 044171 791 MVLQG 795 (813)
Q Consensus 791 i~~~~ 795 (813)
|.|.+
T Consensus 110 l~~~p 114 (234)
T PRK15308 110 VYFEP 114 (234)
T ss_pred EEEEe
Confidence 66664
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=74.16 E-value=19 Score=30.58 Aligned_cols=54 Identities=19% Similarity=0.090 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCCeeEE--------EEEeCCCCcEE---------EEecCeEEEecCcEEEEEEEEEEecC
Q 044171 729 KVIRRVRNVSSANETYT--------VTVKEPSGVKV---------SVSPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 729 ~~~~tv~N~~~~~~ty~--------~~~~~~~g~~v---------~~~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
.++++|+|.++++.+.+ +.+....|-.| +---...+|+||++.++..++.....
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDL 73 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS---
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCC
Confidence 35678888887665544 33443444332 11134789999999999998876653
No 92
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=72.84 E-value=14 Score=40.16 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=38.2
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCC----CCcEEEEecC--------------eEEEecCcEEEEEEEEEEe
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEP----SGVKVSVSPQ--------------VFKIRGLASRELKIVLKAT 780 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~----~g~~v~~~~~--------------~~~v~~g~~~~~~vt~~~~ 780 (813)
..++++|+|..+++.+.++..+.| ..++|++... .++|+||+++++.+.+++.
T Consensus 244 ~~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v~ 314 (317)
T PF13598_consen 244 YEYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEVE 314 (317)
T ss_pred EEEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEEE
Confidence 456779999999999988888766 2344444321 4788888888888887764
No 93
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=72.81 E-value=23 Score=32.91 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=47.3
Q ss_pred ccEEEEEEEEecCCCCeeEE----EEEeCCCCcEE----EE---ecCeEEEecCcEEEEEEEEEEecCCCC---eEEEEE
Q 044171 726 GSRKVIRRVRNVSSANETYT----VTVKEPSGVKV----SV---SPQVFKIRGLASRELKIVLKATNSTRA---YSFGAM 791 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~----~~~~~~~g~~v----~~---~~~~~~v~~g~~~~~~vt~~~~~~~~~---~~~G~i 791 (813)
+...+.++++|.|..+=+.. +......|..+ .- .+..++|+||++..+.|+.......+. ..--.|
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~~~~~~~~~~~~~~~l 97 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSNVGSGGGCKPVTPAGL 97 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEecCCCCCCcCccccCEE
Confidence 44567889999987543322 11221222211 11 255799999999999999988665433 222345
Q ss_pred EEEe-CCcceEEEeE
Q 044171 792 VLQG-NNNHIIRIPI 805 (813)
Q Consensus 792 ~~~~-~~~~~l~~P~ 805 (813)
++.. ++...+++|+
T Consensus 98 ~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 98 TVTPPGGTAPVTVPW 112 (131)
T ss_pred EEECCCCCccEEEeC
Confidence 5554 4445667765
No 94
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=65.30 E-value=28 Score=30.95 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=38.2
Q ss_pred CccEEEEEEEEecCCCC-eeEEEEE-----eCCCCcE---EEEecCeEEEecCcEEEEEEEEEEecC
Q 044171 725 VGSRKVIRRVRNVSSAN-ETYTVTV-----KEPSGVK---VSVSPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~-~ty~~~~-----~~~~g~~---v~~~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
+...++.++++|..++. .+-++.. .- .|+. +......++|+||++.++.++|++...
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 45677888999999877 5544332 22 3663 455566899999999999999998764
No 95
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=64.50 E-value=6 Score=33.08 Aligned_cols=45 Identities=9% Similarity=0.305 Sum_probs=34.7
Q ss_pred EEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCcceEEE
Q 044171 755 KVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRI 803 (813)
Q Consensus 755 ~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~~l~~ 803 (813)
+|+++|..+++..|++..|.+++.+..... ..+.|++++....+|
T Consensus 4 ~I~i~~~~~~l~~G~~~~l~~~~~~~~~~~----~~v~w~ssn~~iatV 48 (79)
T PF02368_consen 4 SITITPTSVTLKVGQTQQLTATVTPSDGSN----SKVTWSSSNPSIATV 48 (79)
T ss_dssp SEEETTTEEECETTCEETTEEEEEEEESTT----SCEEEEESSTTTEEE
T ss_pred EEEEECCEEEEECCCEEEEEEEEEECCCcE----eEEEEEeCCCeEEEE
Confidence 578899999999999999999999887654 456677665544443
No 96
>PLN03080 Probable beta-xylosidase; Provisional
Probab=63.01 E-value=23 Score=43.51 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=45.6
Q ss_pred cEEEEEEEEecCCCCeeEEEE--EeCCCC-cE--E-E-EecCeEEEecCcEEEEEEEEEE-ecCC-----CCeE--EEEE
Q 044171 727 SRKVIRRVRNVSSANETYTVT--VKEPSG-VK--V-S-VSPQVFKIRGLASRELKIVLKA-TNST-----RAYS--FGAM 791 (813)
Q Consensus 727 ~~~~~~tv~N~~~~~~ty~~~--~~~~~g-~~--v-~-~~~~~~~v~~g~~~~~~vt~~~-~~~~-----~~~~--~G~i 791 (813)
..+++++|+|+|+.+..-.+. +..|.+ .. + + .--+++.|+|||+++|+++++. .... ..|. .|..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y 764 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDH 764 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccE
Confidence 466888999999976555443 333321 10 0 0 0123678999999999999987 3321 2222 2433
Q ss_pred -EEEeCCcceEEEe
Q 044171 792 -VLQGNNNHIIRIP 804 (813)
Q Consensus 792 -~~~~~~~~~l~~P 804 (813)
.+.++..|.|+++
T Consensus 765 ~l~vG~~~~~~~~~ 778 (779)
T PLN03080 765 VLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEeCCccceEEe
Confidence 3335556677664
No 97
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=61.25 E-value=7.9 Score=36.43 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=39.3
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
...|+.. -+.....|.++|++| |+|+|..|..+++++||.++|+..+..
T Consensus 74 p~aC~el--rN~~f~~d~vaL~eR------GeCSFl~Ktl~~e~aGa~aiiitd~~~ 122 (193)
T KOG3920|consen 74 PHACEEL--RNEIFAPDSVALMER------GECSFLVKTLNGEKAGATAIIITDSQN 122 (193)
T ss_pred hhHHHHH--hhcccCCCcEEEEec------CCceeeehhhhhhhcCceEEEEecCCC
Confidence 4566532 234457789999998 899999999999999999999988764
No 98
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=59.67 E-value=25 Score=43.10 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=36.6
Q ss_pred ccEEEEEEEEecCCCCeeEEE--EEeCCCCcEEEE------ecCeEEEecCcEEEEEEEEEEecC
Q 044171 726 GSRKVIRRVRNVSSANETYTV--TVKEPSGVKVSV------SPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~--~~~~~~g~~v~~------~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
++.+++++|+|+|+.+..-.+ -+..|.+ .+.- -=.++.|+|||+++++|+++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~~~L 730 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMSRPVKELKGFEKIMLKPGETQTVSFPIDIEAL 730 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCCCHHHhccCceeEeECCCCeEEEEEeecHHHh
Confidence 346788899999996544433 3344432 1111 013678999999999999987543
No 99
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=53.67 E-value=18 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.238 Sum_probs=15.9
Q ss_pred CchhhHHHHHHHHHhcccCCCCCcEEEE
Q 044171 1 MAFCTFILLFSFITIWDFLPLNAKVFIV 28 (813)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~yiV 28 (813)
|+++.+.+.+.++.++......++.+|+
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~~pG~ViI 28 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPATPGNVII 28 (36)
T ss_pred CceeHHHHHHHHHHHHhcccCCCCeEEE
Confidence 7777663444444455555455777765
No 100
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=51.69 E-value=1.6e+02 Score=25.78 Aligned_cols=32 Identities=31% Similarity=0.257 Sum_probs=23.5
Q ss_pred CccEEEEEEEEecCCCCe-eEEEEEeCCCCcEE
Q 044171 725 VGSRKVIRRVRNVSSANE-TYTVTVKEPSGVKV 756 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~-ty~~~~~~~~g~~v 756 (813)
.+.....++|+|.++.+. .|++++..|.+.+|
T Consensus 12 ~~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i 44 (101)
T PF00553_consen 12 GGGFQGEVTVTNNGSSPINGWTVTFTFPSGQTI 44 (101)
T ss_dssp SSEEEEEEEEEESSSSTEESEEEEEEESTTEEE
T ss_pred CCCeEEEEEEEECCCCccCCEEEEEEeCCCCEE
Confidence 445556789999998874 69999888755443
No 101
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.56 E-value=59 Score=38.06 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=38.3
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCC----CCcEEEEe-cC----------------eEEEecCcEEEEEEEEEEecC
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEP----SGVKVSVS-PQ----------------VFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~----~g~~v~~~-~~----------------~~~v~~g~~~~~~vt~~~~~~ 782 (813)
..++++|+|..+++.+.++..+.| ..++|++. |. .|+|+||++++|.+.+++.-.
T Consensus 444 ~~~~i~v~N~~~~~v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v~~P 519 (525)
T TIGR02231 444 YAYRITLKNLRKEPERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKVEHP 519 (525)
T ss_pred EEEEEEEEcCCCCceEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEEecC
Confidence 456678999999998888887766 23444332 11 368888888888888776543
No 102
>PRK13203 ureB urease subunit beta; Reviewed
Probab=50.08 E-value=52 Score=28.90 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=31.3
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eC---------CCCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KE---------PSGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~---------~~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ .. .-|-.+.+ +-..+.+.||+++++++.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 17 AGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 355667889999999775432221 11 11323333 134677889999988764
No 103
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=48.70 E-value=95 Score=27.93 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred EEEEEEEEecCCCCeeEE---EEEeCCCCcEEEEe---------cCeEEEecCcEEEEEEEEEEecCCC
Q 044171 728 RKVIRRVRNVSSANETYT---VTVKEPSGVKVSVS---------PQVFKIRGLASRELKIVLKATNSTR 784 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~---~~~~~~~g~~v~~~---------~~~~~v~~g~~~~~~vt~~~~~~~~ 784 (813)
..+.++|+|.++++..+. +.+....|-..... ...-+|+||++.+..+-|.+|+...
T Consensus 38 v~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~ 106 (123)
T PF11611_consen 38 VVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDK 106 (123)
T ss_dssp EEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-G
T ss_pred EEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCc
Confidence 456789999998877654 22322333222211 1356899999999999999998754
No 104
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=48.03 E-value=2.1e+02 Score=31.35 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=41.1
Q ss_pred ccEEEEEEEEecCCCCeeEE------EEEeCC----------------CCcEEEEecCeEEEecCcEEEEEEEEEEec--
Q 044171 726 GSRKVIRRVRNVSSANETYT------VTVKEP----------------SGVKVSVSPQVFKIRGLASRELKIVLKATN-- 781 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~------~~~~~~----------------~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~-- 781 (813)
.+-+++++|||.|+++.... +....| .| ++++|+ -.+.|||+++++|+++-..
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~-~pI~PGETrtl~V~a~dA~We 339 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDN-SPIAPGETRTLTVEAQDAAWE 339 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES---S-B-TT-EEEEEEEEE-HHHH
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCC-CCcCCCceEEEEEEeehhHHH
Confidence 45678889999999775533 111111 13 445443 3478999999999886421
Q ss_pred ---------CCCCeEEEEEEEEeCCcceEEEeE
Q 044171 782 ---------STRAYSFGAMVLQGNNNHIIRIPI 805 (813)
Q Consensus 782 ---------~~~~~~~G~i~~~~~~~~~l~~P~ 805 (813)
..+.-..|-|.|...+++..-+.+
T Consensus 340 veRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I 372 (381)
T PF04744_consen 340 VERLSDLIYDPDSRFGGLLFFFDASGNRYISEI 372 (381)
T ss_dssp HTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEE
T ss_pred HhhhhhhhcCcccceeEEEEEEcCCCCEEEEec
Confidence 013345577777776666544444
No 105
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=46.69 E-value=1.3e+02 Score=39.04 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=51.2
Q ss_pred CccEEEEEEEEecCCCCeeEE-EEEeC----C-------CCc----------------EEEEecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYT-VTVKE----P-------SGV----------------KVSVSPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~-~~~~~----~-------~g~----------------~v~~~~~~~~v~~g~~~~~~vt 776 (813)
++++++++|++|.|..+..|- ++... + ..+ .+++... -.++||++++|+|.
T Consensus 798 GE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~-~~I~Pg~~~~~~~~ 876 (1185)
T PF08626_consen 798 GEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNK-PPIPPGESATFTVE 876 (1185)
T ss_pred CcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeeccc-CccCCCCEEEEEEE
Confidence 567899999999998765543 22220 0 000 0122111 18999999999999
Q ss_pred EEEecCCCCeEEEEEEEEeC-----C----cceEEEeEEEEEecc
Q 044171 777 LKATNSTRAYSFGAMVLQGN-----N----NHIIRIPIAVYVSTS 812 (813)
Q Consensus 777 ~~~~~~~~~~~~G~i~~~~~-----~----~~~l~~P~~~~~~~~ 812 (813)
+....+.-......|.+... . .-.+++|+.+-+-..
T Consensus 877 ~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~s 921 (1185)
T PF08626_consen 877 VDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPS 921 (1185)
T ss_pred ecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEece
Confidence 86655432333444544421 1 136899998877543
No 106
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=46.51 E-value=68 Score=28.11 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=26.9
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE---eC-C---------CCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV---KE-P---------SGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~---~~-~---------~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ +. + -|-.+.+ +-..+.+.||+++++++.
T Consensus 16 ~gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 16 AGRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp TTSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CCCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 456778889999999775422110 00 0 1333333 123677889999888764
No 107
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=45.96 E-value=1.6e+02 Score=25.51 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=31.7
Q ss_pred cCccEEEEEEEEecCCCC--eeEEEEEeCCCCcEEEEe---cCeEEEecCcEEEEEE
Q 044171 724 LVGSRKVIRRVRNVSSAN--ETYTVTVKEPSGVKVSVS---PQVFKIRGLASRELKI 775 (813)
Q Consensus 724 ~~~~~~~~~tv~N~~~~~--~ty~~~~~~~~g~~v~~~---~~~~~v~~g~~~~~~v 775 (813)
..+....+.+++|....+ ..|.+..--..|+.+.-. ..+++|+++++.+|..
T Consensus 22 ~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~ 78 (94)
T PF07233_consen 22 VNGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSA 78 (94)
T ss_dssp CCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEE
T ss_pred eCCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEE
Confidence 356677788999999876 557777777788876542 2279999999666544
No 108
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=44.22 E-value=59 Score=28.52 Aligned_cols=52 Identities=13% Similarity=0.253 Sum_probs=31.4
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eC---------CCCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KE---------PSGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~---------~~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ .. .-|-.+.+ +-..+.+.||+++++++.
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 355667789999999775432211 11 11333333 134678889999988764
No 109
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=43.90 E-value=58 Score=28.55 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=31.3
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eC---------CCCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KE---------PSGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~---------~~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ .. .-|-.+.+ +-..+.+.||+++++++.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 355667889999999775432211 11 11333333 134678889999988764
No 110
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=43.89 E-value=69 Score=29.41 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=10.2
Q ss_pred cEEEEEEEEecCCCCee
Q 044171 727 SRKVIRRVRNVSSANET 743 (813)
Q Consensus 727 ~~~~~~tv~N~~~~~~t 743 (813)
+++|.++|-|.++++..
T Consensus 48 tktF~V~vaN~s~~~id 64 (124)
T PF14263_consen 48 TKTFDVTVANLSDKDID 64 (124)
T ss_dssp EEEEEEEEEE-SSS-EE
T ss_pred EEEEEEEEecCCCCccc
Confidence 46677778888776543
No 111
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.37 E-value=53 Score=39.00 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=50.8
Q ss_pred EEEEecCCCC-eeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeC
Q 044171 732 RRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGN 796 (813)
Q Consensus 732 ~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~ 796 (813)
+.+.|.-++. +..+++...-.++++...|.-++|.|..-.++++||.+.+...++.+|.|++..+
T Consensus 740 vL~VNqT~~tLQNl~lelATlgdLKlve~p~p~~Laph~f~~ikatvKVsStenGvIfGnIvY~~~ 805 (948)
T KOG1058|consen 740 VLLVNQTKETLQNLSLELATLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTENGVIFGNIVYDTS 805 (948)
T ss_pred EEEecCChHHHhhheeeeeeccCceeeecCCCcccCcccceeEEEEEEEeeccCcEEEEEEEecCc
Confidence 3455554422 3344454455678888889999999999999999999999999999999999874
No 112
>PRK13201 ureB urease subunit beta; Reviewed
Probab=40.24 E-value=83 Score=29.02 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=31.2
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eC---------CCCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KE---------PSGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~---------~~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ .. .-|-.+.+ +-..+.+.||+++++++.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 17 NHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 355667889999999775432211 11 11323333 123677889999988774
No 113
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=39.58 E-value=13 Score=16.96 Aligned_cols=6 Identities=33% Similarity=0.795 Sum_probs=4.2
Q ss_pred ecccCC
Q 044171 534 SYSSRG 539 (813)
Q Consensus 534 ~FSS~G 539 (813)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 114
>PRK13205 ureB urease subunit beta; Reviewed
Probab=38.94 E-value=69 Score=30.16 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=31.5
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eCC---------CCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KEP---------SGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~~---------~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+.+.-.--++ ..+ -|-.+.+ +-..+.+.||+++++++.
T Consensus 17 ~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 17 VGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 356677889999999875432221 111 1333333 123677889999988775
No 115
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=37.56 E-value=3.7e+02 Score=27.63 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=42.6
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEeCC---CCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEe
Q 044171 726 GSRKVIRRVRNVSSANETYTVTVKEP---SGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQG 795 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~~~~~~---~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~ 795 (813)
+....+++|+|.++.+.-....++.. ....+-++|.-+.++||+++.+.|...-+-..+...-=||.+.+
T Consensus 38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~lp~drEs~f~l~v~~ 110 (230)
T PRK09918 38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGSPLNTEHLLRVSFEG 110 (230)
T ss_pred CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCCCeeEEEEEEEEE
Confidence 34556678999987543222223221 11357788999999999999998876532222333334566663
No 116
>PRK13202 ureB urease subunit beta; Reviewed
Probab=35.92 E-value=95 Score=27.41 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=29.7
Q ss_pred EEEEEEEEecCCCCeeEEEEE----eCC---------CCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 728 RKVIRRVRNVSSANETYTVTV----KEP---------SGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~----~~~---------~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+++++|+|+|+.+.-.--++ ..+ -|-.+.+ +-..+.+.||+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 667889999999775432221 111 1323333 134678889999988764
No 117
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=32.49 E-value=1.7e+02 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=25.8
Q ss_pred EEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEE
Q 044171 733 RVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLK 778 (813)
Q Consensus 733 tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~ 778 (813)
++.++. +.+|++.+..+.-.... .+.++|.+|++.+++|+++
T Consensus 41 ~~~~l~--~g~Y~l~v~~~g~~~~~--~~~v~v~~~~~~~~~i~L~ 82 (82)
T PF13620_consen 41 SFEGLP--PGTYTLRVSAPGYQPQT--QENVTVTAGQTTTVDITLE 82 (82)
T ss_dssp EEEEE---SEEEEEEEEBTTEE-EE--EEEEEESSSSEEE--EEEE
T ss_pred EEEccC--CEeEEEEEEECCcceEE--EEEEEEeCCCEEEEEEEEC
Confidence 444553 37788888776432222 2368999999999888874
No 118
>PRK13204 ureB urease subunit beta; Reviewed
Probab=31.81 E-value=99 Score=29.25 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=31.5
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eC---------CCCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KE---------PSGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~---------~~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+...++++|+|+|+++.-.--++ .. .-|-.+.+ +-..+.+.||++++|++.
T Consensus 40 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 356677889999999775432211 11 11323333 133678889999988774
No 119
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.24 E-value=49 Score=23.88 Aligned_cols=24 Identities=8% Similarity=0.248 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHccc
Q 044171 600 AALIKQRHPKWSPAAITSAMMTSA 623 (813)
Q Consensus 600 aALl~q~~p~~s~~~ik~~L~~TA 623 (813)
+--|++.||++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346788999999999999996543
No 120
>PRK15019 CsdA-binding activator; Provisional
Probab=30.69 E-value=49 Score=31.47 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=28.0
Q ss_pred eeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044171 584 ALLSGTSMATPHIAGVAALIKQRHPKWSPAAITS 617 (813)
Q Consensus 584 ~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 617 (813)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 67999999999999999999999876
No 121
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=29.28 E-value=1.4e+02 Score=28.05 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=18.6
Q ss_pred CcEEEEecCeEEEecCcEEEEEEE
Q 044171 753 GVKVSVSPQVFKIRGLASRELKIV 776 (813)
Q Consensus 753 g~~v~~~~~~~~v~~g~~~~~~vt 776 (813)
+.+..++|+.|+|++|.+.+++++
T Consensus 53 a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 53 AFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred eeeeEEcCCEEEECCCCEEEEEEE
Confidence 456778899999999997766664
No 122
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.62 E-value=57 Score=30.71 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=28.5
Q ss_pred eeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044171 584 ALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSA 618 (813)
Q Consensus 584 ~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~ 618 (813)
..+.|.| =|+.|-|++|||++.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998743
No 123
>PRK13198 ureB urease subunit beta; Reviewed
Probab=27.34 E-value=1.3e+02 Score=28.42 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=31.4
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eC---------CCCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KE---------PSGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~---------~~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ .. .-|-.+.+ +-..+.+.||++++|++.
T Consensus 45 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 45 ENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 355677889999999775422211 11 11333333 123678889999988774
No 124
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=27.30 E-value=4.1e+02 Score=22.99 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=40.6
Q ss_pred cEEEEEEEEecCCCCee-EEEEEeCCCCcEEEEecCeE-EEecCcEEEEEEEEEEecC
Q 044171 727 SRKVIRRVRNVSSANET-YTVTVKEPSGVKVSVSPQVF-KIRGLASRELKIVLKATNS 782 (813)
Q Consensus 727 ~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~~~~~-~v~~g~~~~~~vt~~~~~~ 782 (813)
...+..++.|.+..+.+ |++....|.+..+++.|.+- +++||+..+-.+.+..+..
T Consensus 19 ~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~~~ 76 (104)
T smart00809 19 LIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENPGK 76 (104)
T ss_pred eEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECCCC
Confidence 45567788898876644 88888888888888876643 6889987666666665443
No 125
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=26.88 E-value=5.3e+02 Score=24.45 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=29.4
Q ss_pred eEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEe
Q 044171 762 VFKIRGLASRELKIVLKATNSTRAYSFGAMVLQG 795 (813)
Q Consensus 762 ~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~ 795 (813)
.|+|.+|++..|=+.|+......+.+.|.|+++.
T Consensus 107 ~ftv~~ge~v~VGm~~~~tg~~lG~~~~~~tI~A 140 (146)
T PF06510_consen 107 CFTVEPGESVKVGMIFDSTGDSLGDYDGQITIKA 140 (146)
T ss_pred EEEecCCCeeEEEEEEecCCCCCcceeeEEEEEE
Confidence 6899999999999999987665557889999985
No 126
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=26.66 E-value=71 Score=26.00 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=16.1
Q ss_pred CeEEEecCcEEEEEEEEEEec
Q 044171 761 QVFKIRGLASRELKIVLKATN 781 (813)
Q Consensus 761 ~~~~v~~g~~~~~~vt~~~~~ 781 (813)
..+.|+||+++++++++++..
T Consensus 25 ~rv~l~pGes~~v~~~l~~~~ 45 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPPED 45 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEHHH
T ss_pred EEEEECCCCEEEEEEEECHHH
Confidence 467899999999999999854
No 127
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=26.53 E-value=5.8e+02 Score=28.91 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=45.8
Q ss_pred EEE-EEecCCCCeeEEEEEeCC----------CCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEE
Q 044171 731 IRR-VRNVSSANETYTVTVKEP----------SGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQ 794 (813)
Q Consensus 731 ~~t-v~N~~~~~~ty~~~~~~~----------~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~ 794 (813)
+++ |+|.|.....|+=.-... ..-.+-|+...++|-||+++.|.|+|.+... +-+.+-|...+
T Consensus 252 ~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~~-Gif~E~W~L~t 325 (426)
T PF14646_consen 252 EVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRKV-GIFKERWELRT 325 (426)
T ss_pred EEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCCc-eEEEEEEEEEE
Confidence 345 999999888887543321 2346778888999999999999999998774 33445555554
No 128
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.47 E-value=55 Score=22.41 Aligned_cols=13 Identities=46% Similarity=0.759 Sum_probs=10.8
Q ss_pred ChhhHHHHHHHHH
Q 044171 591 MATPHIAGVAALI 603 (813)
Q Consensus 591 MAaP~VAG~aALl 603 (813)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998844
No 129
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.63 E-value=69 Score=30.15 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.9
Q ss_pred eeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044171 584 ALLSGTSMATPHIAGVAALIKQRHPKWSPAAITS 617 (813)
Q Consensus 584 ~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 617 (813)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 68999999999999999999999864
No 130
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=25.33 E-value=1.6e+02 Score=29.45 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=31.3
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eCC---------CCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KEP---------SGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~~---------~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ ..+ -|-.+.+ +-..+.+.||+++++++.
T Consensus 126 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 126 AGRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CCCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 356677889999999775422211 111 1323333 133677889999988764
No 131
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=24.28 E-value=1e+02 Score=27.13 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=22.7
Q ss_pred cEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEE
Q 044171 727 SRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVL 777 (813)
Q Consensus 727 ~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~ 777 (813)
.+.++++++|.+....++.+. +.. ....++||++.+++++.
T Consensus 42 G~~v~l~~~N~~~~~h~~~i~-----~~~-----~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 42 GQPVTLTFTNNDSRPHEFVIP-----DLG-----ISKVLPPGETATVTFTP 82 (104)
T ss_dssp TCEEEEEEEE-SSS-EEEEEG-----GGT-----EEEEE-TT-EEEEEEEE
T ss_pred CCeEEEEEEECCCCcEEEEEC-----CCc-----eEEEECCCCEEEEEEcC
Confidence 445667899998876554432 111 23678899988777643
No 132
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=24.18 E-value=2.9e+02 Score=24.24 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=36.4
Q ss_pred ccEEEEEEEEecCCCC--eeEEEEEeCCCCcEEEEe---cCeEEEecCcEEEEEEE
Q 044171 726 GSRKVIRRVRNVSSAN--ETYTVTVKEPSGVKVSVS---PQVFKIRGLASRELKIV 776 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~--~ty~~~~~~~~g~~v~~~---~~~~~v~~g~~~~~~vt 776 (813)
+......+|+|....+ ..|.+..--..|+++.-. ...++|+++++.+|.-.
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ 87 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAV 87 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEE
Confidence 5566778999999654 557777777778776643 44899999986665543
No 133
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=72 Score=30.11 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=25.8
Q ss_pred eeeccCChhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044171 585 LLSGTSMATPHIAGVAALIKQRHPKWSPAAITS 617 (813)
Q Consensus 585 ~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 617 (813)
.+.|=|= |++|.|.+|++++.+-..+|++|.+
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444443 5899999999999999999999853
No 134
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=23.90 E-value=81 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=26.4
Q ss_pred eeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044171 585 LLSGTSMATPHIAGVAALIKQRHPKWSPAAITSA 618 (813)
Q Consensus 585 ~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~ 618 (813)
.+.|.|= |+.|-|++|||.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556655 57999999999999999999998754
No 135
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=23.81 E-value=3.6e+02 Score=24.13 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=44.0
Q ss_pred cccc-cCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-CChhhhhHHHHHHHHHHhCCcEEEE
Q 044171 254 SGMA-PGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPS-GPAAFLNALEMELLFATKAGVLVVQ 329 (813)
Q Consensus 254 ~GvA-p~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~-~~~~~~~~~~~a~~~a~~~Gi~vV~ 329 (813)
.+.. ++++|+.+ +.+.|+....++.-+++..+.|+++|-+|=....... +.=...+.+...++... |+-||.
T Consensus 31 ~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred ccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh--CCCEee
Confidence 3444 46777764 4555666778888889999999999999877543221 00012344444444332 887774
No 136
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.80 E-value=5.5e+02 Score=25.35 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=34.8
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEeC---C-CCcEEE---EecCeEEEecCcEEEEEEEEEEec
Q 044171 726 GSRKVIRRVRNVSSANETYTVTVKE---P-SGVKVS---VSPQVFKIRGLASRELKIVLKATN 781 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~~~~~---~-~g~~v~---~~~~~~~v~~g~~~~~~vt~~~~~ 781 (813)
..-+++++|-|.|+. .-|.+++.. | +..++. .+-.-=+++||++.+..+++.+..
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 456778899999984 556666554 2 222211 111112689999999999998764
No 137
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=23.76 E-value=2.6e+02 Score=24.37 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=21.8
Q ss_pred CeEEEecCcEEEEEEE----EEEecCCCCeEEEEEEE
Q 044171 761 QVFKIRGLASRELKIV----LKATNSTRAYSFGAMVL 793 (813)
Q Consensus 761 ~~~~v~~g~~~~~~vt----~~~~~~~~~~~~G~i~~ 793 (813)
.+|+|.||++++|+++ +.+-......++|++-+
T Consensus 54 ~tftV~pG~S~S~T~~~~~sI~I~~~~~g~~~G~~C~ 90 (92)
T PF13157_consen 54 NTFTVQPGNSRSFTVRDFQSIQIVTTPTGTIEGEFCI 90 (92)
T ss_pred eEEEECCCceEEEEeccceEEEEEeCCCcEEEEEEEE
Confidence 4799999999999874 22222234466676654
No 138
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.97 E-value=74 Score=24.70 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=23.4
Q ss_pred eeeeccCChhhHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 044171 584 ALLSGTSMATPHIAGVAA------LIKQRHPKWSPAAITSAMM 620 (813)
Q Consensus 584 ~~~sGTSMAaP~VAG~aA------Ll~q~~p~~s~~~ik~~L~ 620 (813)
-...||=+..=.|....+ -+.+.||+++.++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 455677776666655532 3566899999999999984
No 139
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=22.77 E-value=2.7e+02 Score=21.29 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=23.9
Q ss_pred CccEEEEEEEEecCCCCee-EEEEEeCCCCcEEEEecCeEEE
Q 044171 725 VGSRKVIRRVRNVSSANET-YTVTVKEPSGVKVSVSPQVFKI 765 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~~~~~~v 765 (813)
++..+++++++|.|....+ ..+.-..|+|..+. +.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v--~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTFV--SNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEEE--eCcEEE
Confidence 5667888899999986544 33444456664433 344444
No 140
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=22.64 E-value=2e+02 Score=28.70 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=40.7
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCC----------------CC-cE-EEEecCeEEEe-cC---cEEEEEEEEEEecCCCC
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEP----------------SG-VK-VSVSPQVFKIR-GL---ASRELKIVLKATNSTRA 785 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~----------------~g-~~-v~~~~~~~~v~-~g---~~~~~~vt~~~~~~~~~ 785 (813)
..-+++|+|.+.++..+++++... .| +. .++++..+.+. .| ..+...|++.++.. .
T Consensus 93 ~~E~l~l~N~~~~pv~~~l~l~~~aDFaDiFEVRg~~~~~rg~~~~~~~~~~~l~~~Y~g~D~~~r~t~i~~~~~p~--~ 170 (194)
T PF14742_consen 93 LYERLTLTNYSPEPVELTLSLEFDADFADIFEVRGGRRARRGEVLPPEVEDDGLRFSYRGLDGIRRETRISFSPSPA--R 170 (194)
T ss_pred CEEEEEEEeCCCCCEEEEEEEEEECCchhhHhhcCCCCCCCCcccceEEcCCEEEEEEEcCCCCEEEEEEEecCCCC--c
Confidence 556779999999999988886531 12 12 56677777776 33 56777777733322 2
Q ss_pred eEEEEEEEE
Q 044171 786 YSFGAMVLQ 794 (813)
Q Consensus 786 ~~~G~i~~~ 794 (813)
+-.+.+.|.
T Consensus 171 ~~~~~~~~~ 179 (194)
T PF14742_consen 171 VEGGRARWR 179 (194)
T ss_pred eECCEEEEE
Confidence 333556665
No 141
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=22.11 E-value=5.6e+02 Score=22.69 Aligned_cols=54 Identities=17% Similarity=0.157 Sum_probs=40.7
Q ss_pred ccEEEEEEEEecCCCCee-EEEEEeCCCCcEEEEecC-eEEEecCcEEEEEEEEEE
Q 044171 726 GSRKVIRRVRNVSSANET-YTVTVKEPSGVKVSVSPQ-VFKIRGLASRELKIVLKA 779 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~~~-~~~v~~g~~~~~~vt~~~ 779 (813)
+...+..++.|.+..+.+ |++.+..|.+.++++.|. .-+++|++..+-.+.++.
T Consensus 24 ~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 24 NQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 456677889999887755 888888889999999876 568899988888888877
No 142
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.69 E-value=4.8e+02 Score=25.23 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=45.2
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC--ChhhhhHHHHHHHHHHh--CCcEEEEe
Q 044171 265 YKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSG--PAAFLNALEMELLFATK--AGVLVVQA 330 (813)
Q Consensus 265 ~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~--~~~~~~~~~~a~~~a~~--~Gi~vV~A 330 (813)
+.-+...|....+++.-++.+....+|+|-+.+|.+..... ...+.+.+...++.+.+ .+..|++.
T Consensus 43 ~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 43 WRLFAKTGATSADLLRQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred EEEEecCCcCHHHHHHHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 34444566777788888877667789999999998764422 23455666777777766 56666654
No 143
>PRK13986 urease subunit alpha; Provisional
Probab=21.58 E-value=2.1e+02 Score=28.87 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=31.2
Q ss_pred CccEEEEEEEEecCCCCeeEEEEE----eC---------CCCcEEEE-ecCeEEEecCcEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTV----KE---------PSGVKVSV-SPQVFKIRGLASRELKIV 776 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~----~~---------~~g~~v~~-~~~~~~v~~g~~~~~~vt 776 (813)
.+..+++++|+|+|+++.-.--++ .. .-|-.+.+ +-..+.+.||+++++++.
T Consensus 122 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 122 AGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred CCCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 355677889999999775422111 11 11323333 134678889999988764
No 144
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=21.49 E-value=5.3e+02 Score=24.70 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCcEEEEecC--eEEEecCcEEEEEEEEEEecCC---------------CCe-------EEEEEEEEeCCcceEEEeEEE
Q 044171 752 SGVKVSVSPQ--VFKIRGLASRELKIVLKATNST---------------RAY-------SFGAMVLQGNNNHIIRIPIAV 807 (813)
Q Consensus 752 ~g~~v~~~~~--~~~v~~g~~~~~~vt~~~~~~~---------------~~~-------~~G~i~~~~~~~~~l~~P~~~ 807 (813)
+++-+++.|. ++.|.|||...+..+++-.... ..| =+=.-++. .++.+.||..+
T Consensus 48 ~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~--pgE~~~mPv~F 125 (152)
T PF04442_consen 48 PGLPWEFKPEQRSVKVHPGETALVFYEATNPSDKPITGQAIPNVTPGEAGKYFNKIECFCFEEQTLA--PGETVDMPVVF 125 (152)
T ss_dssp TTS-EEEE-S-SEEEEETT--EEEEEEEEE-SSS-EE---EEEE-SSS-STTECCS-TTS-S--EE---TT-EEEEEEEE
T ss_pred CCCceEEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeECHHHhhhhccccceEeccCcCcC--CCCeEEEEEEE
Confidence 4566666654 7889999988888888765542 111 12333444 36788999888
Q ss_pred EEecc
Q 044171 808 YVSTS 812 (813)
Q Consensus 808 ~~~~~ 812 (813)
++...
T Consensus 126 ~IDp~ 130 (152)
T PF04442_consen 126 YIDPD 130 (152)
T ss_dssp EE-GG
T ss_pred EECCc
Confidence 87654
No 145
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.99 E-value=1.3e+02 Score=21.65 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHccc
Q 044171 599 VAALIKQRHPKWSPAAITSAMMTSA 623 (813)
Q Consensus 599 ~aALl~q~~p~~s~~~ik~~L~~TA 623 (813)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998543
No 146
>smart00637 CBD_II CBD_II domain.
Probab=20.68 E-value=5.3e+02 Score=21.91 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=15.9
Q ss_pred EEEEEEEecCCCC-eeEEEEEeCCCCcE
Q 044171 729 KVIRRVRNVSSAN-ETYTVTVKEPSGVK 755 (813)
Q Consensus 729 ~~~~tv~N~~~~~-~ty~~~~~~~~g~~ 755 (813)
.-+++|+|.+..+ ..|++++..+.+.+
T Consensus 9 ~~~v~vtN~~~~~~~~W~v~~~~~~~~~ 36 (92)
T smart00637 9 TANVTVTNTGSSAINGWTVTFDLPGGQT 36 (92)
T ss_pred EEEEEEEeCCCCcccCeEEEEEcCCCcE
Confidence 3456777876643 44666666655443
No 147
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=20.46 E-value=1.6e+02 Score=26.75 Aligned_cols=20 Identities=5% Similarity=0.126 Sum_probs=17.0
Q ss_pred EEEEecCeEEEecCcEEEEE
Q 044171 755 KVSVSPQVFKIRGLASRELK 774 (813)
Q Consensus 755 ~v~~~~~~~~v~~g~~~~~~ 774 (813)
.+.|+|..|+|++|.+.++.
T Consensus 36 ~~~F~P~~ltV~~GdTVtw~ 55 (115)
T TIGR03102 36 GFAFDPPAIRVDPGTTVVWE 55 (115)
T ss_pred ceeEeCCEEEECCCCEEEEE
Confidence 57889999999999987776
No 148
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=20.19 E-value=1.4e+02 Score=26.17 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=15.4
Q ss_pred EEecCeEEEecCcEEEEEEE
Q 044171 757 SVSPQVFKIRGLASRELKIV 776 (813)
Q Consensus 757 ~~~~~~~~v~~g~~~~~~vt 776 (813)
.++|++++|++|+..+++++
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~ 50 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFT 50 (104)
T ss_dssp EEES-EEEEETTCEEEEEEE
T ss_pred eEecCEEEEcCCCeEEEEEE
Confidence 67899999999997776654
Done!