BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044173
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 167/392 (42%), Gaps = 35/392 (8%)
Query: 71 LKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHASLDMAISDI--LS 128
LK +LS LV FYP+AGRL R D + ++CN G F+ A D + D +
Sbjct: 58 LKDALSRALVPFYPMAGRL-KRDEDG----RIEIECNGE-GVLFVEAESDGVVDDFGDFA 111
Query: 129 PTYVPLVVQSFFDHDRALNHDGHSRPLLSIQVTEL-VDGIFIGCSMNHVLGDGTSFWNFF 187
PT + D+ + ++ S LL +QVT G+ +G M H DG S +F
Sbjct: 112 PTLELRRLIPAVDYSQGIS----SYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFI 167
Query: 188 NAFSEIFQAQGKMDSISRPPVVKRWFPDGRDPIINLPFTHRD-----------EFIRRYE 236
N++S++ A+G ++ PP + R RDP F H + + +
Sbjct: 168 NSWSDM--ARGL--DVTLPPFIDRTLLRARDPP-QPQFQHIEYQPPPALKVSPQTAKSDS 222
Query: 237 APQLLERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTT 296
P+ IF T E I+ LKAK+ + NT SS++ L+ VWR + R L DQ T
Sbjct: 223 VPETAVSIFKLTREQISALKAKSKEDG--NTISYSSYEMLAGHVWRCACKARGLEVDQGT 280
Query: 297 SCRMAADNXXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLGWAAWKLHQTVVNQTDKA 356
+A D YFGN I + G+L + +AA K+H + +
Sbjct: 281 KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDY 340
Query: 357 VREWLDAWWKSPFMYHLDRLFDPF---SIMMGSSPRFNKYGNEFGLGQAVALRSGYAHKF 413
+R LD P + L R F ++ + S R + +FG G+ + + G +
Sbjct: 341 LRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPG-GIAY 399
Query: 414 DGKVSAYPGHEGGGSIDLEICLPPHSMTALEA 445
+G P GS+ + I L M ++
Sbjct: 400 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 431
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 166/392 (42%), Gaps = 35/392 (8%)
Query: 71 LKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHASLDMAISDI--LS 128
LK +LS LV FYP+AGRL R D + ++CN G F+ A D + D +
Sbjct: 61 LKDALSRALVPFYPMAGRL-KRDEDG----RIEIECNGE-GVLFVEAESDGVVDDFGDFA 114
Query: 129 PTYVPLVVQSFFDHDRALNHDGHSRPLLSIQVTEL-VDGIFIGCSMNHVLGDGTSFWNFF 187
PT + D+ + ++ S LL +QVT G+ +G M H DG S +F
Sbjct: 115 PTLELRRLIPAVDYSQGIS----SYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFI 170
Query: 188 NAFSEIFQAQGKMDSISRPPVVKRWFPDGRDPIINLPFTHRD-----------EFIRRYE 236
N++S++ A+G ++ PP + R RDP F H + +
Sbjct: 171 NSWSDM--ARGL--DVTLPPFIDRTLLRARDPP-QPQFQHIEYQPPPALAVSPQTAASDS 225
Query: 237 APQLLERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTT 296
P+ IF T E I+ LKAK+ + NT SS++ L+ VWR + R L DQ T
Sbjct: 226 VPETAVSIFKLTREQISALKAKSKEDG--NTISYSSYEMLAGHVWRCACKARGLEVDQGT 283
Query: 297 SCRMAADNXXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLGWAAWKLHQTVVNQTDKA 356
+A D YFGN I + G+L + +AA K+H + +
Sbjct: 284 KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDY 343
Query: 357 VREWLDAWWKSPFMYHLDR---LFDPFSIMMGSSPRFNKYGNEFGLGQAVALRSGYAHKF 413
+R LD P + L R F ++ + S R + +FG G+ + + G +
Sbjct: 344 LRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPG-GIAY 402
Query: 414 DGKVSAYPGHEGGGSIDLEICLPPHSMTALEA 445
+G P GS+ + I L M ++
Sbjct: 403 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 166/392 (42%), Gaps = 35/392 (8%)
Query: 71 LKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHASLDMAISDI--LS 128
LK +LS LV FYP+AGRL R D + ++CN G F+ A D + D +
Sbjct: 61 LKDALSRALVPFYPMAGRL-KRDEDG----RIEIECNGE-GVLFVEAESDGVVDDFGDFA 114
Query: 129 PTYVPLVVQSFFDHDRALNHDGHSRPLLSIQVTEL-VDGIFIGCSMNHVLGDGTSFWNFF 187
PT + D+ + ++ S LL +QVT G+ +G M H DG S +F
Sbjct: 115 PTLELRRLIPAVDYSQGIS----SYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFI 170
Query: 188 NAFSEIFQAQGKMDSISRPPVVKRWFPDGRDPIINLPFTHRD-----------EFIRRYE 236
N++S++ A+G ++ PP + R RDP F H + +
Sbjct: 171 NSWSDM--ARGL--DVTLPPFIDRTLLRARDPP-QPQFQHIEYQPPPALAVSPQTAASDS 225
Query: 237 APQLLERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTT 296
P+ IF T E I+ LKAK+ + NT SS++ L+ VWR + R L DQ T
Sbjct: 226 VPETAVSIFKLTREQISALKAKSKEDG--NTISYSSYEMLAGHVWRCACKARGLEVDQGT 283
Query: 297 SCRMAADNXXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLGWAAWKLHQTVVNQTDKA 356
+A D YFGN I + G+L + +AA K+H + +
Sbjct: 284 KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDY 343
Query: 357 VREWLDAWWKSPFMYHLDR---LFDPFSIMMGSSPRFNKYGNEFGLGQAVALRSGYAHKF 413
+R LD P + L R F ++ + S R + +FG G+ + + G +
Sbjct: 344 LRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPG-GIAY 402
Query: 414 DGKVSAYPGHEGGGSIDLEICLPPHSMTALEA 445
+G P GS+ + I L M ++
Sbjct: 403 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 167/406 (41%), Gaps = 41/406 (10%)
Query: 58 VDQVDFIKTLLDRLKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHA 117
+ + F +T++ +KHSLS+TL HFYP G+LV + + +V+ +S F
Sbjct: 52 ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVE-GDSVAVTFAEC 110
Query: 118 SLDMAISDILSPTYVPLVVQSFFDHDRALNH-----DGHSRPLLSIQVTELVD-GIFIGC 171
+LD+ + L+ + P F+D L D PL S+QVT + GI IG
Sbjct: 111 NLDL---NELTGNH-PRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGI 166
Query: 172 SMNHVLGDGTSFWNFFNAFSEIFQAQGKMDSI---SRPPVVKRWFPDGRDPIINLPFTHR 228
+ +H LGD ++ + F A++ I ++ +S P+ R + P+++ + R
Sbjct: 167 TNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRII---KYPMLDEAYLKR 223
Query: 229 ---DEFIRRYEAPQL------LERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSAL 279
+ F Y L L F T I +LK + A+ +SSF A
Sbjct: 224 AKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLP-TLEYVSSFTVACAY 282
Query: 280 VWRSITRTRNLPPDQTTSCRMAADNXXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLG 339
+W I ++RN D+ D YFGN + + L+G +
Sbjct: 283 IWSCIAKSRN---DKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGF 339
Query: 340 WAAWK-----LHQTVVNQTDKAVREWLDAWWKSPFMYHLDRLFDPFSIMMGSSPRFNKYG 394
A K LH+T+ + D +++ +++ F + + +P+ Y
Sbjct: 340 ITAAKLIGENLHKTLTDYKDGVLKDDMES-----FNDLVSEGMPTTMTWVSGTPKLRFYD 394
Query: 395 NEFGLGQAVALRSGYAHKFDGKVSAYPGHEGGGSIDLEICLPPHSM 440
+FG G+ L + + +G +S E +++ +C+ M
Sbjct: 395 MDFGWGKPKKLET-VSIDHNGAISINSCKESNEDLEIGVCISATQM 439
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 165/401 (41%), Gaps = 41/401 (10%)
Query: 58 VDQVDFIKTLLDRLKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHA 117
+ + F +T++ +KHSLS+TL HFYP G+LV + + +V+ +S F
Sbjct: 52 ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVE-GDSVAVTFAEC 110
Query: 118 SLDMAISDILSPTYVPLVVQSFFDHDRALNH-----DGHSRPLLSIQVTELVD-GIFIGC 171
+LD+ + L+ + P F+D L D PL S+QVT + GI IG
Sbjct: 111 NLDL---NELTGNH-PRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGI 166
Query: 172 SMNHVLGDGTSFWNFFNAFSEIFQAQGKMDSI---SRPPVVKRWFPDGRDPIINLPFTHR 228
+ +H LGD ++ + F A++ I ++ +S P+ R + P ++ + R
Sbjct: 167 TNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRII---KYPXLDEAYLKR 223
Query: 229 ---DEFIRRYEAPQL------LERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSAL 279
+ F Y L L F T I +LK + A+ +SSF A
Sbjct: 224 AKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLP-TLEYVSSFTVACAY 282
Query: 280 VWRSITRTRNLPPDQTTSCRMAADNXXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLG 339
+W I ++RN D+ D YFGN + + L+G +
Sbjct: 283 IWSCIAKSRN---DKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGF 339
Query: 340 WAAWK-----LHQTVVNQTDKAVREWLDAWWKSPFMYHLDRLFDPFSIMMGSSPRFNKYG 394
A K LH+T+ + D +++ ++ F + + +P+ Y
Sbjct: 340 ITAAKLIGENLHKTLTDYKDGVLKDDXES-----FNDLVSEGXPTTXTWVSGTPKLRFYD 394
Query: 395 NEFGLGQAVALRSGYAHKFDGKVSAYPGHEGGGSIDLEICL 435
+FG G+ L + + +G +S E +++ +C+
Sbjct: 395 XDFGWGKPKKLET-VSIDHNGAISINSCKESNEDLEIGVCI 434
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 170/420 (40%), Gaps = 42/420 (10%)
Query: 9 MSECFVQPEYFSE-EMKQPCYLTPWDLVMLSVQYIQKGLLFRKPAIPPASVDQVDFIKTL 67
+ +C V P S E+ P LT +D V L+ ++ L ++ P P DF++T+
Sbjct: 5 IEQCQVVPSPGSATELTLP--LTYFDHVWLAFHRXRRILFYKLPISRP------DFVQTI 56
Query: 68 LDRLKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHASLDMAISDIL 127
+ LK SLSLTL ++ PLAG + Q S + +V N+ I + D + ++
Sbjct: 57 IPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNS---VSVIFSESDXDFNYLI 113
Query: 128 SPTYVPLVVQSFFDHDRALNHDGHS-----RPLLSIQVTELVD-GIFIGCSMNHVLGDGT 181
Y P + F+ L + P+L+IQVT + GI IG + +HV GDG
Sbjct: 114 G--YHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGA 171
Query: 182 SFWNFFNAFSEIFQAQGKMDSISRP--PVVKRWF---PDGRDPII---NLPFTHRDEFIR 233
+ F A++ + + G ++ P R P+G I + H +
Sbjct: 172 TIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSD 231
Query: 234 RYEAPQLLERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPD 293
P + F T I +LK T+ ++SF A VW I ++ +
Sbjct: 232 VVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTH-VTSFTVTCAYVWTCIIKSEAATGE 290
Query: 294 QTTS-----CRMAADNXXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLGWAAWKLHQT 348
+ AAD YFGN++ T +L G + A +L
Sbjct: 291 EIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGE 350
Query: 349 VVNQTDKAVREWL--DAWWKSPFMYHLDRLFDPFSIMMGSSPRFNKYGNEFGLGQAVALR 406
+ + K EW+ +W+K D++ S+ + SP+ + Y +FG G+ L
Sbjct: 351 AIRKRXKD-EEWILSGSWFK-----EYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLE 404
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 60/297 (20%)
Query: 15 QPEYFSEEMKQPCYLTPWDLVMLSVQYIQKGLLFRKPAIP-----PASVD-QVDFIKTLL 68
Q E SEE+ P TP L + ++ + LL IP P +D +D +T
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCH--IPFILFYPNPLDSNLDPAQTS- 60
Query: 69 DRLKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHASLDMAISDILS 128
LK SLS L HFYPLAGR+ + VDCN+S G F+ A + +S
Sbjct: 61 QHLKQSLSKVLTHFYPLAGRINVNSS---------VDCNDS-GVPFVEARVQAQLSQ--- 107
Query: 129 PTYVPLVVQSFFDHDRALNH-DGHSRPLLSIQVTELV-----------DGIFIGCSMNHV 176
+Q+ + ++ + + P I+V E V G IG +++H
Sbjct: 108 ------AIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHK 161
Query: 177 LGDGTSFWNFFNAFSEIFQAQGKMDSISRPPVVKRWFPDGRDPIINLPFTHR--DEFIRR 234
+ D S F NA++ + + ++ + + R FP P+ N P DE
Sbjct: 162 IADVLSLATFLNAWTATCRGETEI-VLPNFDLAARHFP----PVDNTPSPELVPDE---- 212
Query: 235 YEAPQLLERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWR---SITRTR 288
++ + F F E I L+A+A+ + + S Q + A +W+ +TR +
Sbjct: 213 ----NVVMKRFVFDKEKIGALRAQAS--SASEEKNFSRVQLVVAYIWKHVIDVTRAK 263
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 8/162 (4%)
Query: 245 FHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTTSCRMAADN 304
F F+ ++++ LK A +T +S+ ALSA +W+S +R R D +
Sbjct: 234 FTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAV 293
Query: 305 XXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLGWAAWKLHQTV----VNQTDKAVREW 360
Y G N +T+GE+ LG A +L + + Q + + +
Sbjct: 294 DARPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRGLATY 353
Query: 361 L-DAWWKSPFMYHLDRLFDP-FSIMMGSSPRFNKYGNEFGLG 400
L + KS D DP S+M+ S + + +FGLG
Sbjct: 354 LHNNPDKSNVSLTADA--DPSTSVMLSSWAKVGLWDYDFGLG 393
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 11/215 (5%)
Query: 245 FHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTTSCRMAADN 304
F FT ++++ LK A ++ +S+ ALSA +W+S +R R D +T
Sbjct: 242 FSFTPKALSELKDAATKTLDASSKFVSTDDALSAFIWQSTSRVRLARLDASTPTEFCRAV 301
Query: 305 XXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLGWAAWKLHQTVVNQTDKAVREWLDAW 364
Y G N +TV E+ LG A +L + + + + L +
Sbjct: 302 DXRGPXGVSSTYPGLLQNXTYHDSTVAEIANEPLGATASRLRSELNSDRLRRRTQALATY 361
Query: 365 W-----KSPFMYHLDRLFDP-FSIMMGSSPRFN--KYGNEFGLGQAVALRSGYAHKFDGK 416
KS D +P SI + S + +Y FGLG+ ++R F+
Sbjct: 362 XHGLPDKSSVSLTADA--NPSSSIXLSSWAKVGCWEYDFGFGLGKPESVRRPRFEPFESL 419
Query: 417 VSAYPGHEGGGSIDLEICLPPHSMTALEADEEFME 451
P + G I L L+ADEE+ +
Sbjct: 420 XYFXP-KKPDGEFTASISLRDEDXERLKADEEWTK 453
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%)
Query: 245 FHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTTSCRMAADN 304
F F+ ++ + LK A +T +S+ ALSA +W+S +R R D +
Sbjct: 235 FTFSPKAXSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAV 294
Query: 305 XXXXXXXXXXXYFGNSINPLRGVTTVGELLGHDLGWAAWKLH 346
Y G N +T+GE+ LG A +L
Sbjct: 295 DARPAXGVSNNYPGLLQNXTYHNSTIGEIANESLGATASRLR 336
>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
Length = 950
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 24 KQPCYLTPWDLVMLSVQYIQKGLLFRKPAIPPASVDQVDFIKTLLDRLKHSLSLTLVHFY 83
++PC +++++L V+ + + PP S +V++ L ++ S + TLV F
Sbjct: 675 ERPCL--NYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYA---LKHIRESSASTLVDFG 729
Query: 84 PLAGRLVTRQTDSPPSYVVFVDCNNSP-----GAKFIHASLDMAISDILSPT 130
+G L+ D P S + + SP AK +H L+ ++ S T
Sbjct: 730 CGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT 781
>pdb|2GTT|A Chain A, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|B Chain B, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|C Chain C, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|D Chain D, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|E Chain E, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|F Chain F, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|G Chain G, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|H Chain H, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|I Chain I, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|J Chain J, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|K Chain K, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|L Chain L, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|M Chain M, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|N Chain N, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|O Chain O, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|P Chain P, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|Q Chain Q, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|R Chain R, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|S Chain S, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|T Chain T, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|U Chain U, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|V Chain V, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
Length = 450
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 114 FIHASLDMAISDILSPTYVPLVVQSFFDHDRALNHDGHSRPLLSIQVTELVDGI-FIGCS 172
F H + + I + P V S+F H R+L G S P S V + + I F+GC
Sbjct: 260 FFHKNFEEEIRRMFEPGQETAVPHSYFIHFRSLGLSGKS-PYSSNAVGHVFNLIHFVGCY 318
Query: 173 MNHV 176
M V
Sbjct: 319 MGQV 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,835,995
Number of Sequences: 62578
Number of extensions: 573348
Number of successful extensions: 1099
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 14
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)