Query 044173
Match_columns 455
No_of_seqs 131 out of 1281
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 21:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044173.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044173hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ja1 c.43.1.2 (A:1-175) Pol 97.9 7.3E-05 5.3E-09 62.8 13.0 138 27-196 8-145 (175)
2 d1q9ja2 c.43.1.2 (A:181-418) P 97.6 0.0012 8.4E-08 58.0 16.3 102 241-351 32-133 (238)
3 d1l5aa1 c.43.1.2 (A:1-174) Vib 97.4 0.00041 3E-08 58.0 10.5 112 68-196 35-147 (174)
4 d1l5aa2 c.43.1.2 (A:175-424) V 83.7 5.2 0.00038 33.4 11.7 98 239-351 33-130 (250)
5 d1q23a_ c.43.1.1 (A:) Chloramp 77.1 0.77 5.6E-05 38.6 3.5 43 152-195 163-209 (214)
6 d3claa_ c.43.1.1 (A:) Chloramp 76.9 0.79 5.8E-05 38.4 3.5 44 152-195 163-209 (213)
7 d1b5sa_ c.43.1.1 (A:) Dihydrol 66.0 2.2 0.00016 36.3 3.9 29 167-195 207-235 (242)
8 d1dpba_ c.43.1.1 (A:) Dihydrol 62.4 2.5 0.00018 36.0 3.5 28 168-195 209-236 (243)
9 d1scza_ c.43.1.1 (A:) Dihydrol 61.5 2.7 0.0002 35.5 3.5 29 167-195 196-224 (233)
10 d1nm8a1 c.43.1.3 (A:9-385) Car 16.6 59 0.0043 28.8 4.5 37 158-195 298-334 (377)
No 1
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.90 E-value=7.3e-05 Score=62.80 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=80.8
Q ss_pred eeCCccccccccccccceEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHhhhhhcCCCceEeecCCCCCCcceEEEEe
Q 044173 27 CYLTPWDLVMLSVQYIQKGLLFRKPAIPPASVDQVDFIKTLLDRLKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDC 106 (455)
Q Consensus 27 ~~Ls~lD~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~~~~~~g~~l~i~~ 106 (455)
-+|++.++......+. ..+.|..... .+ ++.|++++..++..+|.|-.+++.+.+ | .++...
T Consensus 8 r~l~~~e~~~~~~~~~-~~~~~~l~g~----------ld--~~~l~~A~~~lv~rh~~LRt~f~~~~~----~-~~~~~~ 69 (175)
T d1q9ja1 8 RKLSHSEEVFAQYEVF-TSMTIQLRGV----------ID--VDALSDAFDALLETHPVLASHLEQSSD----G-GWNLVA 69 (175)
T ss_dssp EECCHHHHHHHHTTCE-EEEEEEEESC----------CC--HHHHHHHHHHHHHHCGGGSEEEEECTT----S-SEEEEE
T ss_pred HHhCHHhhhcccCceE-EEEEEEEcCC----------CC--HHHHHHHHHHHHHhchhheEEEEEeCC----e-eEEEEE
Confidence 4588888865432222 2334444432 23 889999999999999999999997754 3 333333
Q ss_pred cCCCCceEEEEecccchhhhcCCCCCCcccccccCCCCCCCCCCCCCCeEEEEEEEeeCeEEEEeecccccccchhHHHH
Q 044173 107 NNSPGAKFIHASLDMAISDILSPTYVPLVVQSFFDHDRALNHDGHSRPLLSIQVTELVDGIFIGCSMNHVLGDGTSFWNF 186 (455)
Q Consensus 107 ~~~~gv~f~~~~~~~~l~~l~~~~~~p~~~~~l~p~~~~~~~~~~~~p~l~vqvt~~~gG~~lg~~~~H~v~Dg~g~~~f 186 (455)
....-..+... +.+-.+.. ......+. +.. .+.|+..+.+..-.++..|.+.+||.++||.++..|
T Consensus 70 ~~~~~~~~~~~--d~~~~~~~-------~~~~~~~~----~l~-~~~~l~~~~i~~~~~~~~l~l~~HH~i~Dg~S~~~l 135 (175)
T d1q9ja1 70 DDLLHSGICVI--DGTAATNG-------SPSGNAEL----RLD-QSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVL 135 (175)
T ss_dssp CCSSSCCCEEE--C-------------------CCC----CCC-TTTCSEEEEEECCSSSCEEEEEEEGGGCCHHHHHHH
T ss_pred CCCCCccEEEE--EcccchhH-------HHHhhccc----Ccc-CCCCeEEEEEEecCCeEEEEEEccccccCHhHHHHH
Confidence 12111111111 11100000 00000111 111 245666666655568888899999999999999999
Q ss_pred HHHHHHHHHh
Q 044173 187 FNAFSEIFQA 196 (455)
Q Consensus 187 l~~wa~~~r~ 196 (455)
++.+.+.+..
T Consensus 136 l~el~~~Y~~ 145 (175)
T d1q9ja1 136 VDELFSRYTD 145 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 2
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.58 E-value=0.0012 Score=57.99 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=81.5
Q ss_pred eeEEEEeCHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHHHhhcCCCCCCceEEEEeecCCCCCCCCCCCCCcccc
Q 044173 241 LERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTTSCRMAADNRPRLEPPLPREYFGNS 320 (455)
Q Consensus 241 ~~~~f~~~~~~l~~Lk~~~~~~~~~~~~~~St~d~l~A~lW~~i~~ar~~~~~~~~~~~~~vd~R~rl~p~lp~~Y~GN~ 320 (455)
....+.++++..++|++.|++. .+|.+.++.|.+-..+.+-.+. .+....+.++++.|+++.|+..++.+||.
T Consensus 32 ~~~~~~ls~~~t~~l~~~~~~~------~~T~~~~l~aa~~~~l~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~G~~ 104 (238)
T d1q9ja2 32 PVTRLWLSKQQTSDLMAFGREH------RLSLNAVVAAAILLTEWQLRNT-PHVPIPYVYPVDLRFVLAPPVAPTEATNL 104 (238)
T ss_dssp CEEEECCCHHHHHHHHHHHTTT------TCCHHHHHHHHHHHHHHHHHTC-SSCCEEEEEEEETTTTSSSCCCTTTBSCC
T ss_pred ceEEEEeCHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHhCC-CCccccccccccccccccCccccceeEee
Confidence 3556789999999999999876 6899999999876666554433 34567889999999999988888899999
Q ss_pred cccccceeeccccccCcHHHHHHHHHHHHHh
Q 044173 321 INPLRGVTTVGELLGHDLGWAAWKLHQTVVN 351 (455)
Q Consensus 321 ~~~~~~~~~~~~l~~~~L~~~A~~iR~ai~~ 351 (455)
+......+.+. .+.++.++++.+++.+.+
T Consensus 105 ~~~~~~r~~~~--~~~~~~~l~~~v~~~l~~ 133 (238)
T d1q9ja2 105 LGAASYLAEIG--PNTDIVDLASDIVATLRA 133 (238)
T ss_dssp EEEEEEEECCC--SSCCHHHHHHHHHHHHHH
T ss_pred eeeEEEEEecC--CCCCHHHHHHHHHHHHHH
Confidence 98887777654 256788999999888754
No 3
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=97.42 E-value=0.00041 Score=57.97 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhhhhcCCCceEeecCCCCCCcceEEEEecCCCCceEEEEecccchhhhcCCCCCCcccccccCCCCCCC
Q 044173 68 LDRLKHSLSLTLVHFYPLAGRLVTRQTDSPPSYVVFVDCNNSPGAKFIHASLDMAISDILSPTYVPLVVQSFFDHDRALN 147 (455)
Q Consensus 68 ~~~L~~sL~~~L~~~p~LaGrl~~~~~~~~~g~~l~i~~~~~~gv~f~~~~~~~~l~~l~~~~~~p~~~~~l~p~~~~~~ 147 (455)
.++|++|+..++..+|.|--++..+++ ... .. -...+.+.....+..-++... ..+.... . ..
T Consensus 35 ~~~l~~A~~~l~~rh~~LRt~f~~~~~------~~~-~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~--~~ 97 (174)
T d1l5aa1 35 TTLLLRALHLTVSEIDLFRARFSAQGE------LYW-HP-FSPPIDYQDLSIHLEAEPLAW-----RQIEQDL--Q--RS 97 (174)
T ss_dssp HHHHHHHHHHHHHTCGGGGEEECTTCC------EEE-CS-SCCCCEEEECTTCTTHHHHHH-----HHHHHHH--T--SC
T ss_pred HHHHHHHHHHHHHhCchheEEEeccCc------EEE-EE-EeeceeeEecccccchHHHHH-----HHHHHHH--h--CC
Confidence 889999999999999999777765432 221 11 122233222111110000000 0011100 0 01
Q ss_pred CCCCCCCeEEEEEEEe-eCeEEEEeecccccccchhHHHHHHHHHHHHHh
Q 044173 148 HDGHSRPLLSIQVTEL-VDGIFIGCSMNHVLGDGTSFWNFFNAFSEIFQA 196 (455)
Q Consensus 148 ~~~~~~p~l~vqvt~~-~gG~~lg~~~~H~v~Dg~g~~~fl~~wa~~~r~ 196 (455)
++-...|++++.+-.. .|...+.+.+||.++||.++..|++.+++++++
T Consensus 98 ~dl~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~~ 147 (174)
T d1l5aa1 98 STLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQS 147 (174)
T ss_dssp CCCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHHHH
Confidence 1223568888888777 467889999999999999999999999998864
No 4
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=83.67 E-value=5.2 Score=33.36 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=65.8
Q ss_pred CceeEEEEeCHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHHHhhcCCCCCCceEEEEeecCCCCCCCCCCCCCcc
Q 044173 239 QLLERIFHFTGESIARLKAKANAEAGNNTNKISSFQALSALVWRSITRTRNLPPDQTTSCRMAADNRPRLEPPLPREYFG 318 (455)
Q Consensus 239 ~~~~~~f~~~~~~l~~Lk~~~~~~~~~~~~~~St~d~l~A~lW~~i~~ar~~~~~~~~~~~~~vd~R~rl~p~lp~~Y~G 318 (455)
......+.|+.+..++|++.|... .+|.+.++.|. |..+. ++. . .....+.++++.|..- --++.+|
T Consensus 33 ~~~~~~~~l~~~~~~~l~~~a~~~------~~s~~~~l~aa-~~~~l-~~~-~-~~~~vig~~~~~R~~~---~~~~~~G 99 (250)
T d1l5aa2 33 HAVSLSYTLNSQLNHLLLKLANAN------QIGWPDALVAL-CALYL-ESA-E-PDAPWLWLPFMNRWGS---VAANVPG 99 (250)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHHT------TCCHHHHHHHH-HHHHH-HHH-S-TTCCEEEEEECCCTTS---GGGGSCS
T ss_pred CceEEEEEECHHHHHHHHHHHHhc------CCCHHHHHHHH-HHHHh-hhh-c-cceeeccceecCCCCh---hhhhCeE
Confidence 345667889999999999998875 68999999987 54444 332 2 2345688999998542 2245567
Q ss_pred cccccccceeeccccccCcHHHHHHHHHHHHHh
Q 044173 319 NSINPLRGVTTVGELLGHDLGWAAWKLHQTVVN 351 (455)
Q Consensus 319 N~~~~~~~~~~~~~l~~~~L~~~A~~iR~ai~~ 351 (455)
.++......+..+ .+.++.++.+.+++.+.+
T Consensus 100 ~~~n~lP~r~~~~--~~~t~~~ll~~v~~~~~~ 130 (250)
T d1l5aa2 100 LMVNSLPLLRLSA--QQTSLGNYLKQSGQAIRS 130 (250)
T ss_dssp CCCEEEEEECCCC--TTCBHHHHHHHHHHHHHH
T ss_pred eEEeeeeEEEEeC--CCCCHHHHHHHHHHHHHH
Confidence 6665554444433 245788888888777654
No 5
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=77.15 E-value=0.77 Score=38.56 Aligned_cols=43 Identities=12% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCCeEEE-EEEEeeCe---EEEEeecccccccchhHHHHHHHHHHHHH
Q 044173 152 SRPLLSI-QVTELVDG---IFIGCSMNHVLGDGTSFWNFFNAFSEIFQ 195 (455)
Q Consensus 152 ~~p~l~v-qvt~~~gG---~~lg~~~~H~v~Dg~g~~~fl~~wa~~~r 195 (455)
..|.+.+ |+.. .|| +-|++.+||.++||.-.+.|++.+.+.+.
T Consensus 163 ~vpii~~Gk~~~-~~~r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le 209 (214)
T d1q23a_ 163 FAPVFTMGKYYT-QGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 209 (214)
T ss_dssp CSCEEEECCCEE-ETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eeeEEEecceEE-ECCEEEEEEEEEecccccchHHHHHHHHHHHHHHh
Confidence 4566654 2222 344 56999999999999999999999999876
No 6
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=76.87 E-value=0.79 Score=38.44 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=33.3
Q ss_pred CCCeEEEEEEEeeCe---EEEEeecccccccchhHHHHHHHHHHHHH
Q 044173 152 SRPLLSIQVTELVDG---IFIGCSMNHVLGDGTSFWNFFNAFSEIFQ 195 (455)
Q Consensus 152 ~~p~l~vqvt~~~gG---~~lg~~~~H~v~Dg~g~~~fl~~wa~~~r 195 (455)
..|.+.+=--.-++| +-|++++||.+.||.-++.|++.+.+.+.
T Consensus 163 ~~Pii~~Gk~~~~~~r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le 209 (213)
T d3claa_ 163 FAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp CSCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred cccEEecCccEEECCEEEEEEEEEecccccccHHHHHHHHHHHHHHh
Confidence 456654422222454 56999999999999999999999998875
No 7
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=65.99 E-value=2.2 Score=36.31 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=27.2
Q ss_pred EEEEeecccccccchhHHHHHHHHHHHHH
Q 044173 167 IFIGCSMNHVLGDGTSFWNFFNAFSEIFQ 195 (455)
Q Consensus 167 ~~lg~~~~H~v~Dg~g~~~fl~~wa~~~r 195 (455)
+-|++++.|-+.||.-+..|++.|.+...
T Consensus 207 m~lslt~DHRviDGa~aa~Fl~~l~~~lE 235 (242)
T d1b5sa_ 207 LALSLSFDHRMIDGATAQKALNHIKRLLS 235 (242)
T ss_dssp EEEEEEECTTTSCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcchhChHHHHHHHHHHHHHHh
Confidence 55899999999999999999999999987
No 8
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=62.42 E-value=2.5 Score=35.98 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=26.5
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHH
Q 044173 168 FIGCSMNHVLGDGTSFWNFFNAFSEIFQ 195 (455)
Q Consensus 168 ~lg~~~~H~v~Dg~g~~~fl~~wa~~~r 195 (455)
-|++++.|-+.||..++.|++.|.+...
T Consensus 209 ~ltls~DHRvidGa~aa~FL~~l~~~lE 236 (243)
T d1dpba_ 209 PLSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccccHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999987
No 9
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=61.50 E-value=2.7 Score=35.51 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=27.4
Q ss_pred EEEEeecccccccchhHHHHHHHHHHHHH
Q 044173 167 IFIGCSMNHVLGDGTSFWNFFNAFSEIFQ 195 (455)
Q Consensus 167 ~~lg~~~~H~v~Dg~g~~~fl~~wa~~~r 195 (455)
+.|++++.|-+.||.-+..|++.|.+...
T Consensus 196 ~~lsls~DHRviDGa~aa~Fl~~l~~~lE 224 (233)
T d1scza_ 196 MYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEhhcchhccHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999987
No 10
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.62 E-value=59 Score=28.76 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=30.3
Q ss_pred EEEEEeeCeEEEEeecccccccchhHHHHHHHHHHHHH
Q 044173 158 IQVTELVDGIFIGCSMNHVLGDGTSFWNFFNAFSEIFQ 195 (455)
Q Consensus 158 vqvt~~~gG~~lg~~~~H~v~Dg~g~~~fl~~wa~~~r 195 (455)
+|+..+.+|.+ |+.+=|+.+||..+..++....+...
T Consensus 298 ~q~IV~~nG~~-g~~~EHS~~DG~~v~~~~~~v~~~~~ 334 (377)
T d1nm8a1 298 LQFIVAEDGSC-GLVYEHAAAEGPPIVTLLDYVIEYTK 334 (377)
T ss_dssp EEEEEETTSCE-EEEECTTSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCE-EeeccCCcccHHHHHHHHHHHHHHhh
Confidence 78877777766 99999999999999998876655554
Done!