BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044174
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 153/295 (51%), Gaps = 24/295 (8%)
Query: 35 DLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP--- 91
DLGC+ G+NT++ + +++ I + + PEF FF+D SNDFNTLF LP
Sbjct: 58 DLGCSSGANTVHIIDFIVKHISKRFDAA--GIDPPEFTAFFSDLPSNDFNTLFQLLPPLV 115
Query: 92 ------------QQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENS 139
R Y+ AGVPGSF+ RLFP +I F H +++LHWLS+VPE + D S
Sbjct: 116 SNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRS 175
Query: 140 PAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYS 199
A+N+GR+ A E+ AY QF D+ FL ARA E+ GG M ++ G P
Sbjct: 176 AAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTD 235
Query: 200 HLTNGVMYDL-MATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTV 258
G+++ + +L E L+ + D FN+P+Y+ S ++ ++VD NG F+I +
Sbjct: 236 QGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL 295
Query: 259 ELTNPTSWL--EGPIDI----KAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRR 307
+ S L P D +A+ R+ + H E+ +++F+R+ R
Sbjct: 296 VVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 350
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 159/316 (50%), Gaps = 27/316 (8%)
Query: 11 IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPE 70
+++ R L L + + I++ADLGCA G NT+ ++D+++ I + + P
Sbjct: 35 VLEQCVRELLRANLPNINKCIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPT 94
Query: 71 FQVFFNDKTSNDFNTLFTSLPQ---------QREYYS---AGVPGSFHHRLFPQSSIHFA 118
Q+F ND NDFN++F LP R+ S +PGSF+ RLFP+ S+HF
Sbjct: 95 IQIFLNDLFPNDFNSVFKLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFL 154
Query: 119 HCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAE-EVVNAYASQFAKDMENFLNARAE 177
H Y L WLS+VP L+ E NKG I+ + A+ V AY QF KD FL +E
Sbjct: 155 HSCYCLQWLSQVPSGLVTELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSE 214
Query: 178 EIVSGGMMVI--IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI 235
E+ S G M++ I G+ L DL+ +L E + E +LDSFNLP+
Sbjct: 215 ELFSHGRMLLTCICKGV-------ELDARNAIDLLEMAINDLVVEGHLEEEKLDSFNLPV 267
Query: 236 YSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPID---IKAWTM--HVRAAMEAMFSK 290
Y S+EE+ +V++ G F I +E ID IKA + VRA E + +
Sbjct: 268 YIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSIDDEHIKAEYVASSVRAVYEPILAS 327
Query: 291 HFRIEIIDEMFNRLIR 306
HF II ++F+R +
Sbjct: 328 HFGEAIIPDIFHRFAK 343
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 170/318 (53%), Gaps = 33/318 (10%)
Query: 33 LADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ 92
+ADLGC+ G N + A+ ++++ ++ + + PE+Q+F ND NDFN +F SLP
Sbjct: 55 IADLGCSSGPNALFAVTELIKTVE-ELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI 113
Query: 93 QREY----YSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIH 148
+ + + GVPGSF+ RLFP++++HF H SY+L WLS+VP + NKG I+
Sbjct: 114 ENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGI------ESNKGNIY 167
Query: 149 YTNAA-EEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMY 207
N + V+NAY QF +D FL RA+E+V GG MV+ + G + +++
Sbjct: 168 MANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG-RRSEDRASTECCLIW 226
Query: 208 DLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL 267
L+A ++ +E LI E ++D FN+P Y+ S E+ + K G F I +E + W
Sbjct: 227 QLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE-IYWS 285
Query: 268 E--------GPIDIKAWTMH--VRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVES 317
G ++ + + + +RA E + HF II+++F+R + +E
Sbjct: 286 SCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLI------IER 339
Query: 318 GYKEKTQ---LFVILMRK 332
KEKT+ + V L+RK
Sbjct: 340 MSKEKTKFINVIVSLIRK 357
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 163/331 (49%), Gaps = 48/331 (14%)
Query: 9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKL 68
++++ A N+N C ++ DLGCA G NT + ++D+++ I + +
Sbjct: 40 QELLRANLPNINKC--------FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELER 91
Query: 69 PEFQVFFNDKTSNDFNTLFTSLP---------QQREYYS---AGVPGSFHHRLFPQSSIH 116
P Q+F ND NDFN++F LP R+ S +PGSF+ RLFP+ S+H
Sbjct: 92 PTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMH 151
Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVN-AYASQFAKDMENFLNAR 175
F H Y LHWLS+VP L+ E + NKG I+ + A+ + AY QF KD FL
Sbjct: 152 FLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211
Query: 176 AEEIVSGGMMVI--IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNL 233
+EE++S G M++ I + P S DL+ +L E + E +LDSFN+
Sbjct: 212 SEELISRGRMLLTFICKEDEFDHPNS-------MDLLEMSINDLVIEGHLEEEKLDSFNV 264
Query: 234 PIYSASSEEMVKLVDKNGHFSIKTVELTNP------------TSWLEGPI--DIKAWTMH 279
PIY+ S+EE+ ++V++ G F I +E N P+ D A H
Sbjct: 265 PIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAH 324
Query: 280 ----VRAAMEAMFSKHFRIEIIDEMFNRLIR 306
VR+ E + + HF I+ ++ +R+ +
Sbjct: 325 VASVVRSIYEPILASHFGEAILPDLSHRIAK 355
>pdb|3KJ4|H Chain H, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|C Chain C, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 220
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNA 152
F+ SY +HW+ + P + L+ W+ G HY +A
Sbjct: 27 FSLSSYGVHWVRQSPGQGLEWLGVIWSGGNTHYNSA 62
>pdb|3IY6|B Chain B, Variable Domains Of The Computer Generated Model (Wam) Of
Fab E Fitted Into The Cryoem Reconstruction Of The
Virus- Fab E Complex
Length = 115
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYT------------NAAEEVVNAYASQF 164
F+ SY +HW+ + P + L+ WN G Y + +V +S
Sbjct: 21 FSLSSYHVHWVRQPPGKGLEWLGVMWNDGDTSYNLALNSRLSISRDTSKSQVFFKMSSLQ 80
Query: 165 AKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVM 206
+D + AR E +PG+ YG+ + + G +
Sbjct: 81 TEDTATYYCARPE-----------LPGLTYGVWFPYWGQGTL 111
>pdb|3PQV|A Chain A, Cyclase Homolog
pdb|3PQV|B Chain B, Cyclase Homolog
pdb|3PQV|C Chain C, Cyclase Homolog
pdb|3PQV|D Chain D, Cyclase Homolog
Length = 365
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 160 YASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSH 200
Y F + ME N + EI G VI PGI G Y+H
Sbjct: 48 YEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTH 88
>pdb|3GIZ|H Chain H, Crystal Structure Of The Fab Fragment Of Anti-Cd20
Antibody Ofatumumab
Length = 222
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 117 FAHCSYALHWLSKVPEELLDENSP-AWNKGRIHYTNAAE 154
F YA+HW+ + P + L+ S +WN G I Y ++ +
Sbjct: 27 FTFNDYAMHWVRQAPGKGLEWVSTISWNSGSIGYADSVK 65
>pdb|1W72|H Chain H, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
pdb|1W72|I Chain I, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
Length = 223
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 122 YALHWLSKVPEELLDENSP-AWNKGRIHYTNAAE 154
YA+HW+ + P + L+ S +WN G I Y ++ +
Sbjct: 32 YAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVK 65
>pdb|1JGV|H Chain H, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 218
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAE 154
F YA+ W PE+ L+ + +N RIHY ++ +
Sbjct: 27 FTFSGYAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVK 64
>pdb|1JGU|H Chain H, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 217
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAE 154
F YA+ W PE+ L+ + +N RIHY ++ +
Sbjct: 27 FTFSGYAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVK 64
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 198 YSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKT 257
Y ++ + +M M + M +A E L ++ +DSF +P YS + NG S K+
Sbjct: 298 YKYIRSCIMLGRMPNL-MLMAKESLYSQLPIDSFTMPSYSRRISTATPYM--NGETSTKS 354
Query: 258 VELTN 262
+ + N
Sbjct: 355 LWVIN 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,508,610
Number of Sequences: 62578
Number of extensions: 382518
Number of successful extensions: 1051
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 15
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)