Query 044174
Match_columns 332
No_of_seqs 155 out of 605
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03492 Methyltransf_7: SAM d 100.0 1.7E-95 4E-100 703.6 30.7 317 11-332 1-334 (334)
2 PLN02668 indole-3-acetate carb 100.0 1.7E-92 3.6E-97 687.9 35.3 323 1-330 38-384 (386)
3 PRK14103 trans-aconitate 2-met 99.3 1.2E-10 2.7E-15 108.3 20.0 203 28-312 28-232 (255)
4 PRK01683 trans-aconitate 2-met 99.3 1.4E-10 3.1E-15 107.7 19.9 222 28-331 30-256 (258)
5 COG4106 Tam Trans-aconitate me 99.0 1E-08 2.2E-13 92.8 14.3 165 109-331 87-255 (257)
6 PTZ00098 phosphoethanolamine N 99.0 3.1E-08 6.7E-13 93.1 18.1 196 28-309 51-246 (263)
7 PRK15068 tRNA mo(5)U34 methylt 99.0 2.7E-09 5.9E-14 103.1 9.9 154 30-264 123-278 (322)
8 TIGR02072 BioC biotin biosynth 98.9 2.3E-08 5.1E-13 90.5 13.6 189 28-309 33-223 (240)
9 PLN02336 phosphoethanolamine N 98.9 2.4E-07 5.2E-12 93.7 20.2 191 29-310 266-459 (475)
10 TIGR02752 MenG_heptapren 2-hep 98.9 1.3E-08 2.9E-13 92.8 10.0 171 29-262 45-220 (231)
11 TIGR00740 methyltransferase, p 98.9 3.8E-08 8.2E-13 90.7 13.1 162 29-254 53-221 (239)
12 PRK10258 biotin biosynthesis p 98.8 3.5E-07 7.5E-12 84.7 17.7 141 29-255 42-182 (251)
13 PRK08317 hypothetical protein; 98.8 1.9E-06 4.2E-11 77.7 21.1 206 28-310 18-224 (241)
14 PRK11036 putative S-adenosyl-L 98.7 1.6E-07 3.5E-12 87.4 13.4 163 28-261 43-208 (255)
15 PLN02244 tocopherol O-methyltr 98.7 4.4E-07 9.5E-12 88.4 16.9 161 28-261 117-279 (340)
16 COG2226 UbiE Methylase involve 98.7 9.9E-08 2.2E-12 88.4 11.3 167 29-257 51-221 (238)
17 PF13489 Methyltransf_23: Meth 98.7 6.8E-08 1.5E-12 82.1 9.4 138 28-257 21-160 (161)
18 PLN02233 ubiquinone biosynthes 98.7 5.5E-08 1.2E-12 91.3 9.2 110 101-259 132-247 (261)
19 TIGR00452 methyltransferase, p 98.7 2.6E-07 5.5E-12 89.1 13.6 164 30-281 122-289 (314)
20 PRK15451 tRNA cmo(5)U34 methyl 98.7 3.9E-07 8.5E-12 84.6 13.9 163 28-254 55-224 (247)
21 PRK11207 tellurite resistance 98.7 3.4E-07 7.3E-12 82.3 12.8 137 30-259 31-169 (197)
22 PLN02396 hexaprenyldihydroxybe 98.7 5E-07 1.1E-11 87.4 14.7 155 29-259 131-288 (322)
23 PLN02490 MPBQ/MSBQ methyltrans 98.6 1.2E-06 2.7E-11 85.2 14.5 147 29-263 113-259 (340)
24 smart00828 PKS_MT Methyltransf 98.6 6.5E-07 1.4E-11 81.2 11.4 143 32-262 2-146 (224)
25 PF08241 Methyltransf_11: Meth 98.5 3E-07 6.4E-12 70.9 7.4 95 34-187 1-95 (95)
26 PRK00216 ubiE ubiquinone/menaq 98.5 1.5E-06 3.3E-11 78.8 11.7 167 30-261 52-226 (239)
27 TIGR00477 tehB tellurite resis 98.5 3.9E-06 8.4E-11 75.3 14.0 103 30-189 31-133 (195)
28 PRK11705 cyclopropane fatty ac 98.4 2.2E-05 4.9E-10 77.7 19.9 130 112-312 226-358 (383)
29 PF01209 Ubie_methyltran: ubiE 98.4 6.1E-07 1.3E-11 83.0 7.9 169 28-259 46-219 (233)
30 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 3.9E-06 8.6E-11 75.3 12.6 165 29-261 39-211 (223)
31 PF12847 Methyltransf_18: Meth 98.4 1.9E-06 4.2E-11 69.2 9.4 95 30-189 2-111 (112)
32 PRK12335 tellurite resistance 98.4 4.2E-06 9.1E-11 79.5 12.6 76 112-259 182-258 (287)
33 PRK06202 hypothetical protein; 98.3 1.1E-05 2.3E-10 74.0 13.4 85 28-129 59-144 (232)
34 PF02353 CMAS: Mycolic acid cy 98.3 8.2E-05 1.8E-09 70.5 19.3 75 166-261 143-218 (273)
35 TIGR02716 C20_methyl_CrtF C-20 98.3 1.9E-05 4.1E-10 75.5 14.7 153 28-256 148-302 (306)
36 TIGR02081 metW methionine bios 98.3 1.3E-06 2.8E-11 78.0 5.5 27 235-262 143-169 (194)
37 PF03848 TehB: Tellurite resis 98.2 7.4E-06 1.6E-10 73.7 8.6 91 30-189 31-133 (192)
38 TIGR02021 BchM-ChlM magnesium 98.2 7.3E-05 1.6E-09 67.8 15.1 29 233-262 180-208 (219)
39 PRK11873 arsM arsenite S-adeno 98.1 4.2E-05 9.2E-10 71.7 13.3 155 28-261 76-231 (272)
40 PRK07580 Mg-protoporphyrin IX 98.1 0.00015 3.3E-09 65.7 15.9 29 233-262 188-216 (230)
41 COG2230 Cfa Cyclopropane fatty 98.1 0.00065 1.4E-08 64.5 19.6 186 27-315 70-269 (283)
42 PLN02336 phosphoethanolamine N 98.0 3.8E-05 8.2E-10 77.8 11.6 77 109-251 98-174 (475)
43 PF13847 Methyltransf_31: Meth 98.0 3.8E-05 8.3E-10 65.6 9.9 105 29-191 3-112 (152)
44 PRK05785 hypothetical protein; 98.0 4E-05 8.7E-10 70.5 10.6 74 30-129 52-125 (226)
45 PRK06922 hypothetical protein; 98.0 1.3E-05 2.9E-10 83.6 7.9 116 30-189 419-537 (677)
46 PRK00121 trmB tRNA (guanine-N( 97.9 0.00011 2.4E-09 66.2 11.7 72 108-224 105-176 (202)
47 PF08242 Methyltransf_12: Meth 97.9 1.1E-05 2.4E-10 63.7 4.1 96 34-185 1-99 (99)
48 TIGR01983 UbiG ubiquinone bios 97.9 0.0002 4.4E-09 64.7 13.0 94 112-260 110-203 (224)
49 smart00138 MeTrc Methyltransfe 97.9 0.00011 2.3E-09 69.2 10.6 117 28-188 98-241 (264)
50 PRK05134 bifunctional 3-demeth 97.9 0.00052 1.1E-08 62.6 14.8 94 111-259 111-204 (233)
51 PF08003 Methyltransf_9: Prote 97.9 0.00013 2.7E-09 69.8 10.8 145 30-258 116-265 (315)
52 TIGR00138 gidB 16S rRNA methyl 97.8 0.00011 2.3E-09 65.4 9.3 19 30-48 43-61 (181)
53 KOG2940 Predicted methyltransf 97.8 4.8E-05 1E-09 69.8 7.0 141 28-258 71-225 (325)
54 KOG1540 Ubiquinone biosynthesi 97.8 0.00012 2.6E-09 68.2 9.4 172 27-259 98-281 (296)
55 KOG1270 Methyltransferases [Co 97.8 0.00016 3.4E-09 67.6 9.8 141 31-259 91-248 (282)
56 PF13649 Methyltransf_25: Meth 97.8 0.00011 2.4E-09 58.3 7.7 18 33-50 1-18 (101)
57 TIGR03438 probable methyltrans 97.7 0.00028 6.1E-09 67.6 11.2 128 9-194 48-182 (301)
58 PRK11188 rrmJ 23S rRNA methylt 97.7 0.00026 5.6E-09 64.4 10.2 108 30-191 52-167 (209)
59 KOG2361 Predicted methyltransf 97.7 0.0005 1.1E-08 63.6 11.5 180 7-260 53-237 (264)
60 PRK00107 gidB 16S rRNA methylt 97.6 0.00045 9.7E-09 61.9 10.4 42 6-49 24-65 (187)
61 PLN02585 magnesium protoporphy 97.6 0.0024 5.3E-08 61.7 16.2 27 235-262 275-301 (315)
62 KOG3010 Methyltransferase [Gen 97.6 0.00096 2.1E-08 61.8 12.2 46 109-193 95-140 (261)
63 PRK04266 fibrillarin; Provisio 97.6 0.0012 2.5E-08 61.0 12.8 21 29-49 72-92 (226)
64 PRK08287 cobalt-precorrin-6Y C 97.6 0.00047 1E-08 61.0 9.6 21 29-49 31-51 (187)
65 PF05401 NodS: Nodulation prot 97.6 0.00045 9.8E-09 62.2 9.4 93 28-189 42-146 (201)
66 PRK11088 rrmA 23S rRNA methylt 97.6 0.00032 7E-09 66.0 8.9 76 29-123 85-160 (272)
67 COG4123 Predicted O-methyltran 97.6 0.00056 1.2E-08 63.8 10.1 116 27-190 42-171 (248)
68 TIGR00091 tRNA (guanine-N(7)-) 97.5 0.00037 8.1E-09 62.3 8.4 52 108-189 81-132 (194)
69 TIGR03533 L3_gln_methyl protei 97.5 0.00061 1.3E-08 64.8 9.7 25 166-190 228-252 (284)
70 cd02440 AdoMet_MTases S-adenos 97.5 0.00064 1.4E-08 51.5 8.0 102 32-188 1-103 (107)
71 PRK15001 SAM-dependent 23S rib 97.5 0.00034 7.3E-09 69.3 7.7 107 31-189 230-340 (378)
72 PLN02232 ubiquinone biosynthes 97.5 0.00065 1.4E-08 59.0 8.6 109 103-258 33-145 (160)
73 PRK14967 putative methyltransf 97.4 0.003 6.4E-08 57.6 13.3 167 30-251 37-204 (223)
74 TIGR02469 CbiT precorrin-6Y C5 97.4 0.00086 1.9E-08 54.2 8.7 20 30-49 20-39 (124)
75 TIGR03534 RF_mod_PrmC protein- 97.4 0.00053 1.1E-08 62.9 8.1 128 29-189 87-217 (251)
76 PRK13255 thiopurine S-methyltr 97.4 0.0049 1.1E-07 56.5 14.2 21 29-49 37-57 (218)
77 PRK13944 protein-L-isoaspartat 97.4 0.001 2.3E-08 60.0 9.6 20 30-49 73-92 (205)
78 PRK00312 pcm protein-L-isoaspa 97.4 0.00097 2.1E-08 60.2 9.4 21 28-48 77-97 (212)
79 PRK09489 rsmC 16S ribosomal RN 97.4 0.00053 1.1E-08 67.0 7.9 106 31-189 198-303 (342)
80 PRK13942 protein-L-isoaspartat 97.4 0.0013 2.9E-08 59.7 9.9 36 8-49 61-96 (212)
81 TIGR00537 hemK_rel_arch HemK-r 97.3 0.0013 2.8E-08 57.7 9.3 123 31-192 21-143 (179)
82 PF00891 Methyltransf_2: O-met 97.3 0.0014 3.1E-08 60.2 9.9 103 28-194 99-204 (241)
83 PF05175 MTS: Methyltransferas 97.3 0.0011 2.4E-08 58.0 8.5 109 30-190 32-141 (170)
84 PHA03411 putative methyltransf 97.3 0.002 4.4E-08 61.0 10.5 118 31-191 66-185 (279)
85 TIGR03840 TMPT_Se_Te thiopurin 97.3 0.0076 1.6E-07 55.0 13.6 58 169-262 132-189 (213)
86 PF07021 MetW: Methionine bios 97.2 0.0026 5.7E-08 57.1 9.5 93 110-262 71-169 (193)
87 PRK11805 N5-glutamine S-adenos 97.2 0.0026 5.6E-08 61.2 10.1 24 167-190 241-264 (307)
88 TIGR00080 pimt protein-L-isoas 97.2 0.003 6.5E-08 57.3 9.8 36 8-49 62-97 (215)
89 PF05148 Methyltransf_8: Hypot 97.1 0.00051 1.1E-08 62.4 4.6 89 27-190 70-159 (219)
90 PF03291 Pox_MCEL: mRNA cappin 97.1 0.0021 4.5E-08 62.6 9.1 106 29-191 62-188 (331)
91 PRK14121 tRNA (guanine-N(7)-)- 97.1 0.0013 2.7E-08 65.4 7.5 100 29-189 122-235 (390)
92 TIGR00536 hemK_fam HemK family 97.1 0.0029 6.4E-08 60.0 9.7 27 165-191 220-246 (284)
93 PTZ00146 fibrillarin; Provisio 97.1 0.0095 2.1E-07 57.0 13.0 40 8-50 114-153 (293)
94 KOG1541 Predicted protein carb 97.1 0.0058 1.3E-07 56.1 10.4 59 106-191 104-162 (270)
95 TIGR00438 rrmJ cell division p 97.0 0.0045 9.8E-08 54.8 9.7 23 167-189 124-146 (188)
96 TIGR03587 Pse_Me-ase pseudamin 96.9 0.0033 7.1E-08 56.9 7.6 77 28-128 42-119 (204)
97 PRK09328 N5-glutamine S-adenos 96.9 0.0047 1E-07 57.6 8.6 25 165-189 214-238 (275)
98 COG2242 CobL Precorrin-6B meth 96.8 0.02 4.4E-07 51.2 11.8 48 28-79 33-94 (187)
99 PF13659 Methyltransf_26: Meth 96.8 0.011 2.3E-07 47.6 9.4 24 167-190 93-116 (117)
100 PRK14968 putative methyltransf 96.8 0.037 8E-07 48.1 13.1 23 168-190 127-149 (188)
101 TIGR00406 prmA ribosomal prote 96.8 0.011 2.3E-07 56.4 10.2 18 30-47 160-177 (288)
102 PRK01544 bifunctional N5-gluta 96.8 0.004 8.7E-08 64.0 7.8 126 30-190 139-270 (506)
103 PF06080 DUF938: Protein of un 96.7 0.029 6.3E-07 51.0 12.2 172 8-259 11-191 (204)
104 KOG3045 Predicted RNA methylas 96.7 0.0023 5E-08 59.9 4.7 25 166-190 241-265 (325)
105 KOG2904 Predicted methyltransf 96.6 0.03 6.5E-07 53.0 11.9 120 30-194 149-290 (328)
106 PF03141 Methyltransf_29: Puta 96.6 0.0019 4.1E-08 65.4 4.2 24 106-129 173-197 (506)
107 PRK14966 unknown domain/N5-glu 96.5 0.013 2.7E-07 58.8 8.9 19 31-49 253-271 (423)
108 PRK07402 precorrin-6B methylas 96.3 0.052 1.1E-06 48.3 11.1 20 29-48 40-59 (196)
109 PRK00377 cbiT cobalt-precorrin 96.2 0.11 2.4E-06 46.3 13.0 21 28-48 39-59 (198)
110 PRK00811 spermidine synthase; 96.2 0.041 8.9E-07 52.3 10.5 22 27-48 74-95 (283)
111 PRK00517 prmA ribosomal protei 96.2 0.025 5.4E-07 52.6 8.9 19 29-47 119-137 (250)
112 KOG4300 Predicted methyltransf 96.2 0.04 8.7E-07 50.2 9.5 110 95-265 128-238 (252)
113 PLN03075 nicotianamine synthas 96.2 0.028 6E-07 53.9 9.1 20 29-48 123-142 (296)
114 COG2518 Pcm Protein-L-isoaspar 96.2 0.032 7E-07 50.8 8.9 49 115-190 122-170 (209)
115 PF01135 PCMT: Protein-L-isoas 96.2 0.027 5.8E-07 51.4 8.5 36 7-48 56-91 (209)
116 TIGR01177 conserved hypothetic 96.1 0.077 1.7E-06 51.4 12.0 24 169-192 274-297 (329)
117 PRK14903 16S rRNA methyltransf 96.0 0.081 1.8E-06 53.3 12.1 63 112-193 305-370 (431)
118 TIGR03704 PrmC_rel_meth putati 95.7 0.069 1.5E-06 49.9 9.5 20 30-49 87-106 (251)
119 PRK10901 16S rRNA methyltransf 95.7 0.13 2.8E-06 51.7 12.1 26 165-190 348-373 (427)
120 TIGR00563 rsmB ribosomal RNA s 95.7 0.13 2.8E-06 51.6 12.0 127 30-192 239-371 (426)
121 COG2264 PrmA Ribosomal protein 95.7 0.09 1.9E-06 50.5 10.2 33 8-48 149-181 (300)
122 COG2227 UbiG 2-polyprenyl-3-me 95.7 0.027 5.9E-07 52.3 6.3 23 170-192 142-164 (243)
123 PRK13943 protein-L-isoaspartat 95.4 0.077 1.7E-06 51.6 8.7 21 29-49 80-100 (322)
124 PRK14902 16S rRNA methyltransf 95.3 0.16 3.4E-06 51.3 10.8 21 30-50 251-271 (444)
125 TIGR00417 speE spermidine synt 95.0 0.21 4.6E-06 47.0 10.3 21 28-48 71-91 (270)
126 PF05891 Methyltransf_PK: AdoM 95.0 0.072 1.6E-06 48.8 6.8 135 28-262 54-203 (218)
127 COG2813 RsmC 16S RNA G1207 met 95.0 0.16 3.4E-06 48.8 9.3 18 32-49 161-178 (300)
128 PRK04457 spermidine synthase; 94.9 0.37 8.1E-06 45.3 11.6 21 28-48 65-85 (262)
129 PRK14904 16S rRNA methyltransf 94.9 0.26 5.6E-06 49.8 11.3 28 165-192 353-380 (445)
130 KOG1975 mRNA cap methyltransfe 94.8 0.14 3.1E-06 49.6 8.4 47 111-191 193-239 (389)
131 TIGR00446 nop2p NOL1/NOP2/sun 94.8 0.3 6.5E-06 45.9 10.6 27 165-191 175-201 (264)
132 smart00650 rADc Ribosomal RNA 94.4 0.16 3.6E-06 44.0 7.5 21 30-50 14-34 (169)
133 PRK14901 16S rRNA methyltransf 94.1 0.61 1.3E-05 47.0 11.7 26 165-190 360-385 (434)
134 PLN02366 spermidine synthase 93.9 0.59 1.3E-05 45.1 10.7 22 27-48 89-110 (308)
135 PF02390 Methyltransf_4: Putat 93.6 0.13 2.8E-06 46.3 5.4 112 31-189 19-133 (195)
136 KOG2899 Predicted methyltransf 93.5 0.48 1E-05 44.4 8.8 48 111-190 163-210 (288)
137 COG2890 HemK Methylase of poly 93.2 0.23 4.9E-06 47.3 6.5 19 32-50 113-131 (280)
138 PRK03612 spermidine synthase; 93.1 0.55 1.2E-05 48.5 9.8 22 28-49 296-317 (521)
139 PLN02781 Probable caffeoyl-CoA 93.0 0.56 1.2E-05 43.3 8.7 22 28-49 67-88 (234)
140 PF08123 DOT1: Histone methyla 93.0 0.66 1.4E-05 42.2 8.9 24 164-187 133-156 (205)
141 PRK15128 23S rRNA m(5)C1962 me 92.9 2.3 4.9E-05 42.6 13.4 27 163-189 313-339 (396)
142 KOG3178 Hydroxyindole-O-methyl 92.7 1.8 4E-05 42.3 11.9 153 29-261 177-331 (342)
143 PF12147 Methyltransf_20: Puta 92.7 7.3 0.00016 37.5 15.6 60 171-254 231-292 (311)
144 KOG1499 Protein arginine N-met 92.4 0.36 7.8E-06 47.1 6.7 115 7-186 35-164 (346)
145 PHA03412 putative methyltransf 92.3 0.57 1.2E-05 43.7 7.6 20 30-49 50-69 (241)
146 PRK01544 bifunctional N5-gluta 92.2 0.24 5.2E-06 51.0 5.6 115 28-189 346-462 (506)
147 PLN02672 methionine S-methyltr 91.8 0.5 1.1E-05 52.8 7.7 28 165-192 254-281 (1082)
148 KOG1271 Methyltransferases [Ge 91.3 2.3 5E-05 38.3 10.0 40 3-48 47-86 (227)
149 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.0 0.5 1.1E-05 44.5 5.9 82 114-260 158-239 (256)
150 PRK01581 speE spermidine synth 90.5 1.7 3.7E-05 43.0 9.3 22 27-48 148-169 (374)
151 PF10294 Methyltransf_16: Puta 90.2 2.1 4.5E-05 37.5 8.8 36 28-80 44-79 (173)
152 PRK11727 23S rRNA mA1618 methy 90.1 4.8 0.00011 39.1 12.0 23 238-260 271-293 (321)
153 PRK11783 rlmL 23S rRNA m(2)G24 89.8 3.4 7.4E-05 44.3 11.7 20 30-49 539-558 (702)
154 TIGR03439 methyl_EasF probable 89.3 4.2 9.2E-05 39.5 10.9 39 9-52 61-99 (319)
155 PRK10611 chemotaxis methyltran 89.3 0.83 1.8E-05 43.7 5.9 43 29-80 115-157 (287)
156 PRK00274 ksgA 16S ribosomal RN 88.9 1.1 2.5E-05 42.1 6.5 50 29-85 42-103 (272)
157 KOG1500 Protein arginine N-met 87.0 0.74 1.6E-05 45.1 4.0 149 29-237 177-342 (517)
158 PF07942 N2227: N2227-like pro 86.7 23 0.00049 33.7 13.8 176 8-260 37-242 (270)
159 PRK13256 thiopurine S-methyltr 86.6 5.5 0.00012 36.8 9.4 36 7-49 28-63 (226)
160 PF01739 CheR: CheR methyltran 86.3 4.6 0.0001 36.4 8.6 45 28-80 30-74 (196)
161 PF06859 Bin3: Bicoid-interact 86.2 0.89 1.9E-05 37.3 3.5 44 115-190 2-45 (110)
162 PF05724 TPMT: Thiopurine S-me 86.1 26 0.00056 32.0 13.6 27 234-262 166-192 (218)
163 PRK14896 ksgA 16S ribosomal RN 86.0 2.1 4.6E-05 39.9 6.5 22 29-50 29-50 (258)
164 COG2263 Predicted RNA methylas 85.3 1.6 3.5E-05 39.3 5.0 44 30-78 46-102 (198)
165 TIGR00478 tly hemolysin TlyA f 83.1 1.1 2.4E-05 41.4 3.2 23 28-50 74-96 (228)
166 PTZ00338 dimethyladenosine tra 83.0 2.9 6.2E-05 40.1 6.1 52 29-83 36-99 (294)
167 COG0220 Predicted S-adenosylme 83.0 13 0.00029 34.3 10.2 54 106-189 111-164 (227)
168 COG1352 CheR Methylase of chem 82.4 23 0.00049 33.7 11.7 44 29-80 96-139 (268)
169 TIGR00755 ksgA dimethyladenosi 81.9 5.2 0.00011 37.1 7.2 21 29-49 29-49 (253)
170 PRK11524 putative methyltransf 81.3 3.3 7.1E-05 39.2 5.7 22 168-189 59-80 (284)
171 PF06325 PrmA: Ribosomal prote 79.3 2.3 4.9E-05 40.9 3.9 34 7-48 147-180 (295)
172 PF05219 DREV: DREV methyltran 78.5 8.8 0.00019 36.3 7.5 20 29-48 94-113 (265)
173 PF02384 N6_Mtase: N-6 DNA Met 77.0 27 0.00059 33.0 10.6 132 28-191 45-185 (311)
174 KOG3191 Predicted N6-DNA-methy 75.7 8.9 0.00019 34.6 6.3 32 162-193 141-172 (209)
175 PF13679 Methyltransf_32: Meth 75.6 4.5 9.7E-05 34.1 4.3 23 27-49 23-45 (141)
176 COG0500 SmtA SAM-dependent met 74.9 17 0.00036 27.9 7.3 24 171-194 137-160 (257)
177 PLN02823 spermine synthase 74.4 36 0.00079 33.3 10.8 23 27-49 101-123 (336)
178 PF05185 PRMT5: PRMT5 arginine 73.4 2.8 6.1E-05 42.6 3.0 21 30-50 187-207 (448)
179 PRK03522 rumB 23S rRNA methylu 73.4 4.5 9.7E-05 38.9 4.2 20 30-49 174-193 (315)
180 PRK10909 rsmD 16S rRNA m(2)G96 73.1 4 8.7E-05 36.8 3.6 19 30-48 54-72 (199)
181 PF01728 FtsJ: FtsJ-like methy 72.9 3.3 7.1E-05 36.1 2.9 38 28-81 22-59 (181)
182 PRK04148 hypothetical protein; 72.6 13 0.00028 31.6 6.4 20 29-48 16-36 (134)
183 PRK13168 rumA 23S rRNA m(5)U19 71.9 5 0.00011 40.5 4.3 20 30-49 298-317 (443)
184 PLN02476 O-methyltransferase 71.4 31 0.00067 32.9 9.3 22 28-49 117-138 (278)
185 TIGR00479 rumA 23S rRNA (uraci 71.2 15 0.00031 36.9 7.5 19 30-48 293-311 (431)
186 KOG1331 Predicted methyltransf 70.7 4.6 0.0001 38.6 3.5 56 107-197 96-151 (293)
187 TIGR00095 RNA methyltransferas 68.3 6.9 0.00015 34.8 4.0 37 8-49 33-69 (189)
188 KOG1661 Protein-L-isoaspartate 66.9 50 0.0011 30.5 9.2 36 9-48 66-101 (237)
189 PF08704 GCD14: tRNA methyltra 66.6 36 0.00078 31.8 8.6 24 28-51 39-62 (247)
190 PF01269 Fibrillarin: Fibrilla 66.6 8.2 0.00018 35.7 4.1 95 8-120 55-149 (229)
191 COG0030 KsgA Dimethyladenosine 66.2 28 0.0006 32.9 7.7 52 30-87 31-94 (259)
192 COG2521 Predicted archaeal met 65.8 8.4 0.00018 36.1 4.0 110 28-190 133-246 (287)
193 COG4976 Predicted methyltransf 65.2 3.1 6.6E-05 38.9 1.1 64 167-261 203-266 (287)
194 TIGR02085 meth_trns_rumB 23S r 65.0 7.4 0.00016 38.4 3.9 19 31-49 235-253 (374)
195 COG5124 Protein predicted to b 64.4 4.5 9.8E-05 35.9 1.9 37 204-240 39-75 (209)
196 PF03962 Mnd1: Mnd1 family; I 64.1 3.9 8.4E-05 36.7 1.5 34 207-240 29-62 (188)
197 PRK11760 putative 23S rRNA C24 63.6 7.3 0.00016 38.4 3.4 41 9-49 190-231 (357)
198 PRK11933 yebU rRNA (cytosine-C 61.5 63 0.0014 33.2 9.9 21 29-49 113-133 (470)
199 TIGR01444 fkbM_fam methyltrans 60.2 17 0.00036 29.9 4.7 18 32-49 1-18 (143)
200 PF11968 DUF3321: Putative met 58.4 58 0.0013 30.0 8.1 85 9-133 33-120 (219)
201 PF09445 Methyltransf_15: RNA 57.3 6.7 0.00014 34.4 1.8 19 32-50 2-20 (163)
202 COG1189 Predicted rRNA methyla 56.6 13 0.00029 34.6 3.7 34 10-49 66-99 (245)
203 PF00398 RrnaAD: Ribosomal RNA 56.2 79 0.0017 29.4 9.0 52 29-86 30-93 (262)
204 PF07091 FmrO: Ribosomal RNA m 55.9 21 0.00047 33.5 5.0 63 9-81 90-166 (251)
205 KOG3433 Protein involved in me 54.4 8.3 0.00018 34.5 1.8 37 204-240 38-74 (203)
206 COG0742 N6-adenine-specific me 53.6 1.4E+02 0.003 26.9 9.6 48 29-79 43-103 (187)
207 KOG3115 Methyltransferase-like 53.0 7.6 0.00016 35.6 1.4 20 29-48 60-79 (249)
208 PRK13699 putative methylase; P 52.9 28 0.0006 32.0 5.2 21 169-189 52-72 (227)
209 TIGR02143 trmA_only tRNA (urac 52.3 44 0.00095 32.7 6.8 18 32-49 200-217 (353)
210 PRK01747 mnmC bifunctional tRN 51.4 42 0.00091 35.6 7.0 24 28-51 56-79 (662)
211 COG4122 Predicted O-methyltran 51.1 1.2E+02 0.0027 27.8 9.1 24 28-51 58-81 (219)
212 PF07757 AdoMet_MTase: Predict 49.0 9.9 0.00021 31.3 1.4 20 28-47 57-76 (112)
213 PRK05031 tRNA (uracil-5-)-meth 46.8 70 0.0015 31.4 7.3 44 31-78 208-263 (362)
214 smart00400 ZnF_CHCC zinc finge 44.4 20 0.00043 25.2 2.2 21 31-51 22-42 (55)
215 cd08788 CARD_NOD2_2_CARD15 Cas 43.2 27 0.00059 27.0 2.9 44 205-249 11-54 (81)
216 KOG3420 Predicted RNA methylas 43.0 15 0.00033 32.0 1.7 19 28-46 47-65 (185)
217 KOG1596 Fibrillarin and relate 42.8 2.6E+02 0.0057 26.6 9.8 96 7-120 137-232 (317)
218 COG5459 Predicted rRNA methyla 42.1 2.2E+02 0.0048 28.5 9.6 59 177-248 213-271 (484)
219 PF09243 Rsm22: Mitochondrial 40.0 30 0.00065 32.7 3.4 83 28-127 32-115 (274)
220 PF14904 FAM86: Family of unkn 39.2 29 0.00063 28.0 2.6 31 277-307 67-99 (100)
221 TIGR02987 met_A_Alw26 type II 38.2 39 0.00084 34.8 4.2 23 29-51 31-53 (524)
222 PF02375 JmjN: jmjN domain; I 37.3 14 0.00031 23.8 0.5 15 234-248 1-15 (34)
223 PF09597 IGR: IGR protein moti 35.9 36 0.00078 24.6 2.5 27 158-184 13-39 (57)
224 PF07101 DUF1363: Protein of u 35.9 14 0.00031 29.6 0.4 12 34-46 7-18 (124)
225 PRK00050 16S rRNA m(4)C1402 me 35.0 30 0.00066 33.3 2.6 22 30-51 20-41 (296)
226 COG2519 GCD14 tRNA(1-methylade 33.9 87 0.0019 29.6 5.3 46 171-231 177-222 (256)
227 PRK05313 hypothetical protein; 32.9 2.1E+02 0.0046 29.2 8.1 90 11-120 130-219 (452)
228 cd08025 RNR_PFL_like_DUF711 Un 32.3 1.8E+02 0.0039 29.3 7.4 87 12-120 127-213 (400)
229 PF05971 Methyltransf_10: Prot 32.1 2.5E+02 0.0053 27.2 8.2 61 186-259 216-282 (299)
230 COG4076 Predicted RNA methylas 30.6 56 0.0012 29.8 3.3 64 10-83 23-94 (252)
231 PF02268 TFIIA_gamma_N: Transc 30.4 63 0.0014 22.6 2.9 21 207-227 12-32 (49)
232 PHA00457 inhibitor of host bac 30.1 53 0.0012 24.0 2.5 30 229-259 25-58 (63)
233 KOG4589 Cell division protein 29.0 44 0.00094 30.5 2.3 24 27-50 67-90 (232)
234 KOG1501 Arginine N-methyltrans 29.0 43 0.00094 34.2 2.6 37 9-49 50-86 (636)
235 PF05167 DUF711: Uncharacteris 28.0 1.4E+02 0.003 30.1 6.0 91 8-120 105-195 (399)
236 PF04816 DUF633: Family of unk 27.1 1.4E+02 0.003 27.1 5.3 42 33-91 1-42 (205)
237 PF09851 SHOCT: Short C-termin 26.1 50 0.0011 20.6 1.6 18 212-229 6-23 (31)
238 TIGR00730 conserved hypothetic 25.8 1.1E+02 0.0023 27.1 4.3 41 206-249 137-177 (178)
239 smart00545 JmjN Small domain f 25.0 45 0.00097 22.5 1.3 16 233-248 2-17 (42)
240 KOG3987 Uncharacterized conser 24.5 90 0.002 29.0 3.5 36 12-47 95-130 (288)
241 PF13260 DUF4051: Protein of u 24.0 1.2E+02 0.0027 21.2 3.3 28 156-183 21-48 (54)
242 PF02636 Methyltransf_28: Puta 23.8 1.3E+02 0.0028 27.6 4.7 24 29-52 18-41 (252)
243 PF02527 GidB: rRNA small subu 22.5 1.3E+02 0.0028 26.7 4.2 16 32-47 51-66 (184)
244 PF01596 Methyltransf_3: O-met 22.0 67 0.0015 29.0 2.3 22 29-50 45-66 (205)
245 PF10925 DUF2680: Protein of u 21.6 1.2E+02 0.0026 22.0 3.1 42 205-251 15-56 (59)
246 COG2821 MltA Membrane-bound ly 21.5 75 0.0016 31.6 2.6 62 181-255 203-265 (373)
247 COG4798 Predicted methyltransf 21.0 1.3E+02 0.0027 27.7 3.7 20 28-47 47-66 (238)
248 KOG1269 SAM-dependent methyltr 20.7 1E+02 0.0022 30.6 3.4 101 32-192 113-218 (364)
249 COG2609 AceE Pyruvate dehydrog 20.7 4.6E+02 0.01 28.7 8.2 88 156-259 199-293 (887)
250 PF08714 Fae: Formaldehyde-act 20.7 1.2E+02 0.0025 26.6 3.3 46 203-248 76-124 (159)
251 KOG2920 Predicted methyltransf 20.6 50 0.0011 31.6 1.2 18 30-47 117-134 (282)
252 TIGR03126 one_C_fae formaldehy 20.3 1E+02 0.0023 26.9 3.0 28 204-231 79-106 (160)
No 1
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.7e-95 Score=703.55 Aligned_cols=317 Identities=44% Similarity=0.739 Sum_probs=266.4
Q ss_pred HHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC
Q 044174 11 IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL 90 (332)
Q Consensus 11 l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l 90 (332)
||+||++++.... .+++++|||||||+|+||+.+++.||++|+++|++.+ ..++|+|||||||||+||||+||++|
T Consensus 1 ~~~ai~~~~~~~~---~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~-~~~~~e~~v~~nDlP~NDFn~lF~~l 76 (334)
T PF03492_consen 1 LEEAIKELYNSSN---NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSN-NQPPPEFQVFFNDLPSNDFNTLFKSL 76 (334)
T ss_dssp -HHHHHHHHHSTT---TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT--SS--EEEEEEEE-TTS-HHHHHHCH
T ss_pred ChHHHHHHHhcCC---CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhc-CCCCCeEEEEeCCCCCccHHHHHHhC
Confidence 6899999986442 6889999999999999999999999999999998754 13689999999999999999999999
Q ss_pred ccc-------ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCC-CHHHHHHHHH
Q 044174 91 PQQ-------REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNA-AEEVVNAYAS 162 (332)
Q Consensus 91 ~~~-------~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~-~~~v~~ay~~ 162 (332)
|++ ++||++|||||||+||||++|+||+||++||||||++|+.+.+..+|+||||+||++++ +++|.+||++
T Consensus 77 ~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~ 156 (334)
T PF03492_consen 77 PSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAK 156 (334)
T ss_dssp HHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHH
T ss_pred hhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHH
Confidence 987 58999999999999999999999999999999999999999999999999999999955 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHH
Q 044174 163 QFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEE 242 (332)
Q Consensus 163 q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E 242 (332)
||++||.+||++||+||||||+||++++||++.++... +.+.+|++|+++|+|||.||+|++|++|+||+|+|+||.+|
T Consensus 157 Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eE 235 (334)
T PF03492_consen 157 QFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSST-GSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEE 235 (334)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTST-TCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHH
T ss_pred HHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccC-CcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHH
Confidence 99999999999999999999999999999999666544 56789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEEeEEEEeC-CCC---CC-----CCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHhchh
Q 044174 243 MVKLVDKNGHFSIKTVELTN-PTS---WL-----EGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSD 313 (332)
Q Consensus 243 ~~~~ie~~G~F~I~~le~~~-p~~---~~-----~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~~l~ 313 (332)
++++|+++|+|+|+++|.++ +.. +. +...+|+.+++++||++||+|++|||++|+|+||+||+++++++++
T Consensus 236 v~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~ 315 (334)
T PF03492_consen 236 VRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLE 315 (334)
T ss_dssp HHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 221 11 1124899999999999999999999999999999999999999998
Q ss_pred hhhcCCcceEEEEEEEEeC
Q 044174 314 KVESGYKEKTQLFVILMRK 332 (332)
Q Consensus 314 ~~~~~~~~~~~~~~~L~r~ 332 (332)
.......++++++++|+||
T Consensus 316 ~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 316 KEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HTHTT-BEEEEEEEEEEE-
T ss_pred HhhccCCCcEEEEEEEeeC
Confidence 8433458999999999997
No 2
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1.7e-92 Score=687.95 Aligned_cols=323 Identities=33% Similarity=0.546 Sum_probs=291.3
Q ss_pred ChhhhhhHHHHHHHHHHhhhhcccCCCC-CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCC
Q 044174 1 RLAADAVKEKIVDAITRNLNVCELSSAS-NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKT 79 (332)
Q Consensus 1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~-~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp 79 (332)
|+++..++|+|++||++++... .+ ++++|||||||+|+||+.+++.||++|+++|.+.+ ..+|+|||||||||
T Consensus 38 ~~~~~~~k~~leeai~~~~~~~----~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~--~~~pe~qv~~nDLP 111 (386)
T PLN02668 38 ALHARSMLHLLEETLDNVHLNS----SPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAG--LDPPEFSAFFSDLP 111 (386)
T ss_pred HHHHHHHHHHHHHHHHHhcccc----CCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcC--CCCCcceEEecCCC
Confidence 4678899999999998885321 23 68999999999999999999999999999998743 35789999999999
Q ss_pred CCchHHHHhcCccc----------------ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCC
Q 044174 80 SNDFNTLFTSLPQQ----------------REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWN 143 (332)
Q Consensus 80 ~NDFn~lf~~l~~~----------------~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~n 143 (332)
+||||+||++||++ ++||++|||||||+||||++|+||+||++|||||||+|+.+.|+.++.||
T Consensus 112 ~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~N 191 (386)
T PLN02668 112 SNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYN 191 (386)
T ss_pred CCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCccccc
Confidence 99999999999853 24999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHH-HHHHHHHHHHhhc
Q 044174 144 KGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDL-MATIFMELANEQL 222 (332)
Q Consensus 144 kg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv~eGl 222 (332)
||+||+++++++|.+||++||++||..||++||+||+|||+||++++||++.++..+...+.+|+. +.++|++||.||+
T Consensus 192 kg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGl 271 (386)
T PLN02668 192 KGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGL 271 (386)
T ss_pred CCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999998777666346777877 9999999999999
Q ss_pred cchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC----CCCC--CCCccHHHHHHHHHHHHhhHHHhhhCHHH
Q 044174 223 ITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP----TSWL--EGPIDIKAWTMHVRAAMEAMFSKHFRIEI 296 (332)
Q Consensus 223 i~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p----~~~~--~~~~~~~~~a~~iRa~~epll~~hfg~~i 296 (332)
|++||+|+||+|+|+||.+|++++|+++|+|+|+++|+++. ..+. +....++.+++++||++||++++|||++|
T Consensus 272 I~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i 351 (386)
T PLN02668 272 VTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEEL 351 (386)
T ss_pred CCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999999999872 1111 11246788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhcCCcceEEEEEEEE
Q 044174 297 IDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILM 330 (332)
Q Consensus 297 ~delf~r~~~~v~~~l~~~~~~~~~~~~~~~~L~ 330 (332)
+|+||+||+++++++++... ++.++.+++++|.
T Consensus 352 ~D~lF~r~~~~v~~~~~~~~-~~~~~~~~~~sL~ 384 (386)
T PLN02668 352 SNELFLRVERRATSHAKELL-EKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHHHHHHHHHHHHhhc-ccCceEEEEEEEe
Confidence 99999999999999888842 5778888888875
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=1.2e-10 Score=108.28 Aligned_cols=203 Identities=16% Similarity=0.191 Sum_probs=123.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH 107 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~ 107 (332)
....+|+|+|||+|..+..+.+. .|..+|+-.|+- -+.....+.. . +..+.+.+.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~-----------------~p~~~v~gvD~s-~~~~~~a~~~----~--~~~~~~d~~- 82 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARR-----------------WPGAVIEALDSS-PEMVAAARER----G--VDARTGDVR- 82 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH-----------------CCCCEEEEEECC-HHHHHHHHhc----C--CcEEEcChh-
Confidence 34579999999999877654321 123455666642 2233333221 1 122334543
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
.+.|++++|+++|+.++||+... ..+|+.=++-|+|||++++
T Consensus 83 ~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 83 DWKPKPDTDVVVSNAALQWVPEH--------------------------------------ADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred hCCCCCCceEEEEehhhhhCCCH--------------------------------------HHHHHHHHHhCCCCcEEEE
Confidence 45678899999999999997531 1234444577889999999
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhh-hcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCC
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAE-LDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSW 266 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~-~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~ 266 (332)
++.+... .+ .+.. +..+..++-....- -..+..+.++.+.+++..++++.| |++...+.......
T Consensus 125 ~~~~~~~-~~--------~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~~ 190 (255)
T PRK14103 125 QVPGNFD-AP--------SHAA----VRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVHQL 190 (255)
T ss_pred EcCCCcC-Ch--------hHHH----HHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeeeeC
Confidence 9866311 10 1111 11111111110000 001234556789999999999999 98876664322211
Q ss_pred CCCCccHHHHHHHHHHH-HhhHHHhhhCHHHHHHHHHHHHHHHHhch
Q 044174 267 LEGPIDIKAWTMHVRAA-MEAMFSKHFRIEIIDEMFNRLIRRLFEFS 312 (332)
Q Consensus 267 ~~~~~~~~~~a~~iRa~-~epll~~hfg~~i~delf~r~~~~v~~~l 312 (332)
.+ .+.+..|+++. +.++++ .++++.++++.+.+.+.+++..
T Consensus 191 -~~---~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 191 -TG---EDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLREAY 232 (255)
T ss_pred -CC---chhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHHHHC
Confidence 11 25688898865 467777 6999999999999999998874
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=1.4e-10 Score=107.73 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=129.9
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH 107 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~ 107 (332)
.+..+|+|+|||+|..+..+.+. .|.-+|+..|.-. +.-...+...+ ++ .-+.+++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~-----------------~~~~~v~gvD~s~-~~i~~a~~~~~--~~--~~~~~d~~- 86 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER-----------------WPAARITGIDSSP-AMLAEARSRLP--DC--QFVEADIA- 86 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH-----------------CCCCEEEEEECCH-HHHHHHHHhCC--CC--eEEECchh-
Confidence 34579999999999988766432 1224566666432 22222222111 11 11223332
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
.+.|++++|+++|+.++||+... ..+|+.-.+-|+|||++++
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 87 SWQPPQALDLIFANASLQWLPDH--------------------------------------LELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred ccCCCCCccEEEEccChhhCCCH--------------------------------------HHHHHHHHHhcCCCcEEEE
Confidence 34577899999999999996431 1345556678999999999
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhc-ccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCC
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELD-SFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSW 266 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d-~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~ 266 (332)
++.+.... ..+. .+.++.....-. ..+. .-..+.++|+.+++...+++.| +.|+..+...+++.
T Consensus 129 ~~~~~~~~---------~~~~----~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~~~ 193 (258)
T PRK01683 129 QMPDNLDE---------PSHV----LMREVAENGPWE-QNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTYYHPM 193 (258)
T ss_pred ECCCCCCC---------HHHH----HHHHHHccCchH-HHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeeeeeec
Confidence 86542110 1111 122222111000 0111 1123457799999999999999 67766554332222
Q ss_pred CCCCccHHHHHHHHHHH-HhhHHHhhhCHHHHHHHHHHHHHHHHhchh-hhhcC--CcceEEEEEEEEe
Q 044174 267 LEGPIDIKAWTMHVRAA-MEAMFSKHFRIEIIDEMFNRLIRRLFEFSD-KVESG--YKEKTQLFVILMR 331 (332)
Q Consensus 267 ~~~~~~~~~~a~~iRa~-~epll~~hfg~~i~delf~r~~~~v~~~l~-~~~~~--~~~~~~~~~~L~r 331 (332)
. + .+.+.+|+++. +.+++. +++++..+++.++|.+.+.+... .-. + ...+.-++++-+|
T Consensus 194 ~-~---~~~~~~~~~~~~~~~~~~-~l~~~~~~~f~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 256 (258)
T PRK01683 194 P-S---AQAIVEWVKGTGLRPFLD-PLTESEQAAFLAAYLARIAEAYPLQAD-GKVLLAFPRLFIVARR 256 (258)
T ss_pred C-C---chhhhhhhhhccHHHHHh-hCCHHHHHHHHHHHHHHHHHHCCCCCC-CcEEcccceEEEEEEe
Confidence 1 1 25677788864 477775 79999999999999999988743 211 1 2344455666555
No 5
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.00 E-value=1e-08 Score=92.80 Aligned_cols=165 Identities=18% Similarity=0.240 Sum_probs=104.8
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
.-|+...|++|||++||||...|..+. +.+ .+|.|||.+.+.
T Consensus 87 w~p~~~~dllfaNAvlqWlpdH~~ll~----------------------------------rL~----~~L~Pgg~LAVQ 128 (257)
T COG4106 87 WKPEQPTDLLFANAVLQWLPDHPELLP----------------------------------RLV----SQLAPGGVLAVQ 128 (257)
T ss_pred cCCCCccchhhhhhhhhhccccHHHHH----------------------------------HHH----HhhCCCceEEEE
Confidence 458889999999999999887665432 111 477899999999
Q ss_pred ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCc-CcccCCHHHHHHHHHhCCceEEeEEEEeCCCCCC
Q 044174 189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNL-PIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL 267 (332)
Q Consensus 189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~-P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~ 267 (332)
|++--++- + ..++++.++++-- +.++..+.. ----||+.-|-.++...+ -+|+--++.-.+...
T Consensus 129 mPdN~dep--s-----------H~~mr~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~Y~h~l~ 193 (257)
T COG4106 129 MPDNLDEP--S-----------HRLMRETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTTYYHQLP 193 (257)
T ss_pred CCCccCch--h-----------HHHHHHHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeeeccccCC
Confidence 98743221 1 2223333332211 111222110 112467888999998877 477766655433332
Q ss_pred CCCccHHHHHHHHHH-HHhhHHHhhhCHHHHHHHHHHHHHHHHhchhh-hh-cCCcceEEEEEEEEe
Q 044174 268 EGPIDIKAWTMHVRA-AMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDK-VE-SGYKEKTQLFVILMR 331 (332)
Q Consensus 268 ~~~~~~~~~a~~iRa-~~epll~~hfg~~i~delf~r~~~~v~~~l~~-~~-~~~~~~~~~~~~L~r 331 (332)
.++.+..|+++ .+.|.+.. ++++....+.++|..+++++... .. .--..|.-+||+-+|
T Consensus 194 ----~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~ 255 (257)
T COG4106 194 ----GADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATR 255 (257)
T ss_pred ----Cccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEec
Confidence 22678999985 56688884 99999999999999999986443 11 012345567776665
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.99 E-value=3.1e-08 Score=93.05 Aligned_cols=196 Identities=10% Similarity=0.063 Sum_probs=108.7
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH 107 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~ 107 (332)
+...+|+|+|||+|..+..++.. + ..+|+-.|+.. +.....+..... .--+..+.+++..
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~--------~----------~~~v~giD~s~-~~~~~a~~~~~~-~~~i~~~~~D~~~ 110 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEK--------Y----------GAHVHGVDICE-KMVNIAKLRNSD-KNKIEFEANDILK 110 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhh--------c----------CCEEEEEECCH-HHHHHHHHHcCc-CCceEEEECCccc
Confidence 44579999999999988766421 0 13455555432 222222221111 1123335567777
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
..+|++++|+++|+.++|+++. .|...+|+.-++-|+|||++++
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence 7789999999999888765431 1344567777788999999999
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCCC
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL 267 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~ 267 (332)
+-....+... + ...+...... . .+..++.++|.+++++.| |++...+-..++..
T Consensus 155 ~d~~~~~~~~---------~---~~~~~~~~~~----------~--~~~~~~~~~~~~~l~~aG-F~~v~~~d~~~~~~- 208 (263)
T PTZ00098 155 TDYCADKIEN---------W---DEEFKAYIKK----------R--KYTLIPIQEYGDLIKSCN-FQNVVAKDISDYWL- 208 (263)
T ss_pred EEeccccccC---------c---HHHHHHHHHh----------c--CCCCCCHHHHHHHHHHCC-CCeeeEEeCcHHHH-
Confidence 8665443211 0 1111111110 0 123579999999999999 98766653321100
Q ss_pred CCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHH
Q 044174 268 EGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLF 309 (332)
Q Consensus 268 ~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~ 309 (332)
... ..+..-+++--+-+. +.+|++..+.+-.-+...+.
T Consensus 209 --~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 209 --ELL-QVELKKLEEKKEEFL-KLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred --HHH-HHHHHHHHHhHHHHH-HhcCHHHHHHHHHHHHHHHH
Confidence 000 111122222222333 35777766666555555443
No 7
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.96 E-value=2.7e-09 Score=103.13 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=96.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcccc
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFHH 107 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy~ 107 (332)
.-+|+|+|||+|..++.++.. + +. +|+--| |+-.+...++...... ..-+.-+++++..
T Consensus 123 g~~VLDIGCG~G~~~~~la~~------------g-----~~-~V~GiD-~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGA------------G-----AK-LVVGID-PSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHc------------C-----CC-EEEEEc-CCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH
Confidence 368999999999998765331 1 11 366667 5555554443322110 1112335556655
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
-.+ ++++|+++|..++||+.. ...+|+.-++.|+|||++++
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~d--------------------------------------p~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRRS--------------------------------------PLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CCC-cCCcCEEEECChhhccCC--------------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence 444 788999999999998432 22356667788999999999
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCC
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPT 264 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~ 264 (332)
.....+.... .. +...+....+...++.||.+++...+++.| |++.++....++
T Consensus 225 ~~~~i~~~~~-----~~-----------------l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~~~t 278 (322)
T PRK15068 225 ETLVIDGDEN-----TV-----------------LVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDVSVT 278 (322)
T ss_pred EEEEecCCCc-----cc-----------------cCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeCCCC
Confidence 8654432211 00 011111223444567899999999999999 998887765554
No 8
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.91 E-value=2.3e-08 Score=90.53 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=114.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH 107 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~ 107 (332)
..+.+|+|+|||+|..+..+.+. .|..++...|......+..-+.+++ + +..+-+++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~~~~~~~~~~~~~~--~--~~~~~~d~~~ 91 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKR-----------------FPQAEFIALDISAGMLAQAKTKLSE--N--VQFICGDAEK 91 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHh-----------------CCCCcEEEEeChHHHHHHHHHhcCC--C--CeEEecchhh
Confidence 34578999999999987665432 1234567777654444333333332 1 2224466677
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
..+|++++|+++|+.++||+.. ...+|+...+-|+|||.+++
T Consensus 92 ~~~~~~~fD~vi~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 92 LPLEDSSFDLIVSNLALQWCDD--------------------------------------LSQALSELARVLKPGGLLAF 133 (240)
T ss_pred CCCCCCceeEEEEhhhhhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 7789999999999999999633 22466777788999999999
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCC
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSW 266 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~ 266 (332)
...+.+. + ..+..++.. ....+++.+++..++.+. |....++... +...
T Consensus 134 ~~~~~~~-----------~-~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~ 183 (240)
T TIGR02072 134 STFGPGT-----------L-HELRQSFGQ----------------HGLRYLSLDELKALLKNS--FELLTLEEELITLSF 183 (240)
T ss_pred EeCCccC-----------H-HHHHHHHHH----------------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC
Confidence 8765432 1 112222211 123457889999998765 6655544332 1111
Q ss_pred CCCCccHHHHHHHHHHHHhhHHH-hhhCHHHHHHHHHHHHHHHH
Q 044174 267 LEGPIDIKAWTMHVRAAMEAMFS-KHFRIEIIDEMFNRLIRRLF 309 (332)
Q Consensus 267 ~~~~~~~~~~a~~iRa~~epll~-~hfg~~i~delf~r~~~~v~ 309 (332)
. +...+..++|........ ...+.+...++.+.|.+...
T Consensus 184 ~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 184 D----DPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ 223 (240)
T ss_pred C----CHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence 1 125567777765443322 23566666677666665553
No 9
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.86 E-value=2.4e-07 Score=93.72 Aligned_cols=191 Identities=12% Similarity=0.132 Sum_probs=112.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR 108 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~ 108 (332)
...+|+|+|||+|..++.+.+.. ..+|+--|+. .+.-...+........-+.-+-+++...
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~------------------~~~v~gvDiS-~~~l~~A~~~~~~~~~~v~~~~~d~~~~ 326 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF------------------DVHVVGIDLS-VNMISFALERAIGRKCSVEFEVADCTKK 326 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc------------------CCEEEEEECC-HHHHHHHHHHhhcCCCceEEEEcCcccC
Confidence 35699999999998776654311 1245555553 2222222221111112233445677777
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
.+|++++|+++|..++||+... ..+|+.=++-|+|||++++.
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d~--------------------------------------~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQDK--------------------------------------PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CCCCCCEEEEEECCcccccCCH--------------------------------------HHHHHHHHHHcCCCeEEEEE
Confidence 7899999999999999997431 13455556778899999999
Q ss_pred ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCCCC
Q 044174 189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLE 268 (332)
Q Consensus 189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~ 268 (332)
...+....+. . .+...+. . .-+..++.+++.+++++.| |++..++.+.
T Consensus 369 ~~~~~~~~~~-----~----~~~~~~~---~-------------~g~~~~~~~~~~~~l~~aG-F~~i~~~d~~------ 416 (475)
T PLN02336 369 DYCRSPGTPS-----P----EFAEYIK---Q-------------RGYDLHDVQAYGQMLKDAG-FDDVIAEDRT------ 416 (475)
T ss_pred EeccCCCCCc-----H----HHHHHHH---h-------------cCCCCCCHHHHHHHHHHCC-Ceeeeeecch------
Confidence 8776543211 0 1111111 0 1134678999999999999 9987665331
Q ss_pred CCccHHHHHHHHHHH---HhhHHHhhhCHHHHHHHHHHHHHHHHh
Q 044174 269 GPIDIKAWTMHVRAA---MEAMFSKHFRIEIIDEMFNRLIRRLFE 310 (332)
Q Consensus 269 ~~~~~~~~a~~iRa~---~epll~~hfg~~i~delf~r~~~~v~~ 310 (332)
+.+...++.|...+ .+.++ +.+|++..+.+...+.+.+..
T Consensus 417 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 459 (475)
T PLN02336 417 -DQFLQVLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVR 459 (475)
T ss_pred -HHHHHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhh
Confidence 11223334443333 22233 357777777776666666554
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.86 E-value=1.3e-08 Score=92.77 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=94.1
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccccceeeecCCcccc
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQREYYSAGVPGSFHH 107 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~~~f~~~vpgSFy~ 107 (332)
..-+|+|+|||+|..+..+.+. + .|..+|+-.|+-. ......+.. .....--+.-+.+....
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~--------~--------~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEA--------V--------GPEGHVIGLDFSE-NMLSVGRQKVKDAGLHNVELVHGNAME 107 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHH--------h--------CCCCEEEEEECCH-HHHHHHHHHHHhcCCCceEEEEechhc
Confidence 3579999999999988765442 1 1234566666532 222222211 11110113334555555
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
-.+|++++|+|+++.++||++.. ..+|+.-.+-|+|||++++
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~--------------------------------------~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPDY--------------------------------------MQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCCCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHHcCcCeEEEE
Confidence 56788999999999999996431 1244555567789999998
Q ss_pred EecccCCCCCCCCcchhHHHHH----HHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDL----MATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~----l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
.-.+.++.. .....+.. +-..+..+...+......+. ..-..+|+.+|+++.+++.| |++.+++.+.
T Consensus 150 ~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 220 (231)
T TIGR02752 150 LETSQPTIP-----GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSYT 220 (231)
T ss_pred EECCCCCCh-----HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEcc
Confidence 765544321 01111100 01111111111110000000 11236789999999999999 9988777653
No 11
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.86 E-value=3.8e-08 Score=90.66 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=95.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCccc
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSFH 106 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSFy 106 (332)
...+|+|+|||+|..+..+.+.+ ..|..+++--|+-. +.-...+.. .... ..-+.-+-|++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~---------------~~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v~~~~~d~~ 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI---------------NQPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPVEILCNDIR 116 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc---------------CCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 44689999999999887764421 12345666666522 333333321 1110 112333556776
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
.-.+| +.|+++|++++||++. .|...+|+.-.+-|+|||+++
T Consensus 117 ~~~~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 117 HVEIK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred hCCCC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 65454 4789999999999743 123356777778999999999
Q ss_pred EEecccCCCCCCCCcchhHHHHHHHHHHHHHHH-hhccchhhh----cccCcCcccCCHHHHHHHHHhCCceE
Q 044174 187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELAN-EQLITEAEL----DSFNLPIYSASSEEMVKLVDKNGHFS 254 (332)
Q Consensus 187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~-eGli~~e~~----d~fn~P~y~ps~~E~~~~ie~~G~F~ 254 (332)
+.-..+.+... ..+.+...+..... .|. +.+++ +.+.-.....|++|+++.+++.| |.
T Consensus 159 i~d~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 159 LSEKFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred EeecccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 98654433221 12233333333333 343 33322 23333445579999999999999 76
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.80 E-value=3.5e-07 Score=84.71 Aligned_cols=141 Identities=11% Similarity=0.136 Sum_probs=84.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR 108 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~ 108 (332)
..-+|+|+|||+|..+..+.. . ..+|+..|+-. +.....+..... ..| +-+++..-
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~--------~-----------~~~v~~~D~s~-~~l~~a~~~~~~-~~~---~~~d~~~~ 97 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE--------R-----------GSQVTALDLSP-PMLAQARQKDAA-DHY---LAGDIESL 97 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH--------c-----------CCeEEEEECCH-HHHHHHHhhCCC-CCE---EEcCcccC
Confidence 356899999999987765421 1 12455555422 111111111110 112 34455555
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
.+|++++|+++|+.++||+...+ .+|+.-.+-|+|||.+++.
T Consensus 98 ~~~~~~fD~V~s~~~l~~~~d~~--------------------------------------~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 98 PLATATFDLAWSNLAVQWCGNLS--------------------------------------TALRELYRVVRPGGVVAFT 139 (251)
T ss_pred cCCCCcEEEEEECchhhhcCCHH--------------------------------------HHHHHHHHHcCCCeEEEEE
Confidence 68899999999999999955421 2444555778899999999
Q ss_pred ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEE
Q 044174 189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSI 255 (332)
Q Consensus 189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I 255 (332)
..+.++ +.-+.++|..+- + -....-+++.+|+...+...| +.+
T Consensus 140 ~~~~~~------------~~el~~~~~~~~--~---------~~~~~~~~~~~~l~~~l~~~~-~~~ 182 (251)
T PRK10258 140 TLVQGS------------LPELHQAWQAVD--E---------RPHANRFLPPDAIEQALNGWR-YQH 182 (251)
T ss_pred eCCCCc------------hHHHHHHHHHhc--c---------CCccccCCCHHHHHHHHHhCC-cee
Confidence 887653 123445555331 0 111234678999999998777 554
No 13
>PRK08317 hypothetical protein; Provisional
Probab=98.77 E-value=1.9e-06 Score=77.72 Aligned_cols=206 Identities=18% Similarity=0.124 Sum_probs=105.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH 107 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~ 107 (332)
....+|+|+|||+|..+..+.+.. .|.-+++--|+-.+-... .+........-+..+.+.+..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~----------------~~~~~v~~~d~~~~~~~~-a~~~~~~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRV----------------GPEGRVVGIDRSEAMLAL-AKERAAGLGPNVEFVRGDADG 80 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc----------------CCCcEEEEEeCCHHHHHH-HHHHhhCCCCceEEEeccccc
Confidence 445799999999999887665432 012344444543221111 111100000011122234444
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
..++++++|++++..++||+.. +..+|+.-.+-|+|||.+++
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCCcEEEE
Confidence 4578889999999999999654 12345556678889999999
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCC
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSW 266 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~ 266 (332)
....-+...... ... ..+...+..... .+.-| .+..++...+++.| |.+..++.+. +...
T Consensus 123 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----------~~~~~---~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~ 183 (241)
T PRK08317 123 LDTDWDTLVWHS--GDR---ALMRKILNFWSD----------HFADP---WLGRRLPGLFREAG-LTDIEVEPYTLIETD 183 (241)
T ss_pred EecCCCceeecC--CCh---HHHHHHHHHHHh----------cCCCC---cHHHHHHHHHHHcC-CCceeEEEEEEeccC
Confidence 865322110000 011 122222221111 11112 23468999999999 9888777664 2111
Q ss_pred CCCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHh
Q 044174 267 LEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFE 310 (332)
Q Consensus 267 ~~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~ 310 (332)
.........+..+++.+.+ ..-..++.++++++.+++....
T Consensus 184 ~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~ 224 (241)
T PRK08317 184 LKEADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLARA 224 (241)
T ss_pred cchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhc
Confidence 1111111223333333322 1224556677777777765543
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.74 E-value=1.6e-07 Score=87.44 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=88.1
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF 105 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF 105 (332)
+.+.+|+|+|||+|..++.+++. + .+|+..|.-. +.-...+...... ..-+.-+-+++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~------------g-------~~v~~vD~s~-~~l~~a~~~~~~~g~~~~v~~~~~d~ 102 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL------------G-------HQVILCDLSA-EMIQRAKQAAEAKGVSDNMQFIHCAA 102 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc------------C-------CEEEEEECCH-HHHHHHHHHHHhcCCccceEEEEcCH
Confidence 34579999999999988777531 0 1233334211 2222222111100 00111222333
Q ss_pred ccC-CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174 106 HHR-LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM 184 (332)
Q Consensus 106 y~~-lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~ 184 (332)
.+- .++++++|++++..++||+...+ .+|+.=++-|+|||+
T Consensus 103 ~~l~~~~~~~fD~V~~~~vl~~~~~~~--------------------------------------~~l~~~~~~LkpgG~ 144 (255)
T PRK11036 103 QDIAQHLETPVDLILFHAVLEWVADPK--------------------------------------SVLQTLWSVLRPGGA 144 (255)
T ss_pred HHHhhhcCCCCCEEEehhHHHhhCCHH--------------------------------------HHHHHHHHHcCCCeE
Confidence 322 25678999999999999986421 133344467889999
Q ss_pred EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174 185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT 261 (332)
Q Consensus 185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 261 (332)
+++.+..... ..+-..+..-+. .+..|+...+.. .-.|-+..+++++.+.+++.| |++....-+
T Consensus 145 l~i~~~n~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi 208 (255)
T PRK11036 145 LSLMFYNANG---------LLMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTGV 208 (255)
T ss_pred EEEEEECccH---------HHHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeeeE
Confidence 9988755321 001111111111 123333221111 113566778999999999999 998776633
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=98.74 E-value=4.4e-07 Score=88.37 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=87.8
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF 105 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF 105 (332)
...-+|+|+|||+|..+..+.+.. ..+|.--|+-.+ .....+.+.... .--+.-+-+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~------------------g~~v~gvD~s~~-~i~~a~~~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY------------------GANVKGITLSPV-QAARANALAAAQGLSDKVSFQVADA 177 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc------------------CCEEEEEECCHH-HHHHHHHHHHhcCCCCceEEEEcCc
Confidence 345789999999999998876531 012222222111 111111111000 01122234555
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
.+..||++++|+|+|..++|++.. ...+|+.=.+-|+|||++
T Consensus 178 ~~~~~~~~~FD~V~s~~~~~h~~d--------------------------------------~~~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 178 LNQPFEDGQFDLVWSMESGEHMPD--------------------------------------KRKFVQELARVAAPGGRI 219 (340)
T ss_pred ccCCCCCCCccEEEECCchhccCC--------------------------------------HHHHHHHHHHHcCCCcEE
Confidence 666689999999999999988533 113455556778899999
Q ss_pred EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174 186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT 261 (332)
Q Consensus 186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 261 (332)
++......+..+... ... ..-...+..+. ..+.+| .+.+.+|+.+++++.| |...+.+.+
T Consensus 220 vi~~~~~~~~~~~~~-~l~---~~~~~~~~~i~----------~~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~d~ 279 (340)
T PLN02244 220 IIVTWCHRDLEPGET-SLK---PDEQKLLDKIC----------AAYYLP-AWCSTSDYVKLAESLG-LQDIKTEDW 279 (340)
T ss_pred EEEEecccccccccc-cCC---HHHHHHHHHHH----------hhccCC-CCCCHHHHHHHHHHCC-CCeeEeeeC
Confidence 998655433221110 000 01111222211 112234 2348999999999999 887665543
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.73 E-value=9.9e-08 Score=88.39 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=99.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR 108 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~ 108 (332)
+..+|+|+|||+|--|+.+.+.+- +-+|..-|.-.+=.+.-=+.+.+.....+.-|-|...+-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-----------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-----------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-----------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 579999999999999988755321 223333333222222211112221112256678888999
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
.||++|+|++.+++.||++.+.+..+ +--++-|||||++++.
T Consensus 114 Pf~D~sFD~vt~~fglrnv~d~~~aL--------------------------------------~E~~RVlKpgG~~~vl 155 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVTDIDKAL--------------------------------------KEMYRVLKPGGRLLVL 155 (238)
T ss_pred CCCCCccCEEEeeehhhcCCCHHHHH--------------------------------------HHHHHhhcCCeEEEEE
Confidence 99999999999999999988755433 3334566799999998
Q ss_pred ecccCCCCCCCCcchhHHHHHHHH-HHHHHHHhhccc--hhhhc-ccCcCcccCCHHHHHHHHHhCCceEEeE
Q 044174 189 MPGIPYGMPYSHLTNGVMYDLMAT-IFMELANEQLIT--EAELD-SFNLPIYSASSEEMVKLVDKNGHFSIKT 257 (332)
Q Consensus 189 ~~gr~~~~~~~~~~~~~~~~~l~~-al~~mv~eGli~--~e~~d-~fn~P~y~ps~~E~~~~ie~~G~F~I~~ 257 (332)
=.++++...... ........ ++--+. .+++ .+... -.....-+|+.+++.+.+++.| |+...
T Consensus 156 e~~~p~~~~~~~----~~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 156 EFSKPDNPVLRK----AYILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred EcCCCCchhhHH----HHHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 877765432111 01111112 221110 1111 11111 1234556899999999999999 87555
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.72 E-value=6.8e-08 Score=82.11 Aligned_cols=138 Identities=23% Similarity=0.311 Sum_probs=83.4
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccc-
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFH- 106 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy- 106 (332)
....+|+|+|||.|.++..+.. . . .++...|.-...-.. ....+..|.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~--------~---------~--~~~~g~D~~~~~~~~------------~~~~~~~~~~ 69 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAK--------R---------G--FEVTGVDISPQMIEK------------RNVVFDNFDA 69 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHH--------T---------T--SEEEEEESSHHHHHH------------TTSEEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHH--------h---------C--CEEEEEECCHHHHhh------------hhhhhhhhhh
Confidence 5568999999999987655421 1 1 144444432211111 001111221
Q ss_pred -cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 107 -HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 107 -~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
...+|++++|+|+|+.+|||+.. +..+|+.-.+-|+|||++
T Consensus 70 ~~~~~~~~~fD~i~~~~~l~~~~d--------------------------------------~~~~l~~l~~~LkpgG~l 111 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDVLEHLPD--------------------------------------PEEFLKELSRLLKPGGYL 111 (161)
T ss_dssp HTHHCHSSSEEEEEEESSGGGSSH--------------------------------------HHHHHHHHHHCEEEEEEE
T ss_pred hhhhccccchhhHhhHHHHhhccc--------------------------------------HHHHHHHHHHhcCCCCEE
Confidence 34468899999999999999663 234667777889999999
Q ss_pred EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeE
Q 044174 186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKT 257 (332)
Q Consensus 186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~ 257 (332)
++....+.. .....+... ...... . --..+-+.++++.++++.| |+|.+
T Consensus 112 ~~~~~~~~~--------------~~~~~~~~~---~~~~~~---~--~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 112 VISDPNRDD--------------PSPRSFLKW---RYDRPY---G--GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEBTTS--------------HHHHHHHHC---CGTCHH---T--TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EEEEcCCcc--------------hhhhHHHhc---CCcCcc---C--ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 999988643 011112111 111100 0 1125569999999999999 98753
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.71 E-value=5.5e-08 Score=91.28 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=65.3
Q ss_pred cCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044174 101 VPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180 (332)
Q Consensus 101 vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~ 180 (332)
+-++...-.||++|+|++++++++||+.. ...+|+.-++-||
T Consensus 132 ~~~d~~~lp~~~~sfD~V~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLk 173 (261)
T PLN02233 132 IEGDATDLPFDDCYFDAITMGYGLRNVVD--------------------------------------RLKAMQEMYRVLK 173 (261)
T ss_pred EEcccccCCCCCCCEeEEEEecccccCCC--------------------------------------HHHHHHHHHHHcC
Confidence 34455555689999999999999999643 1235566667888
Q ss_pred cCCeEEEEecccCCCCCCCCcchhHHHHHH-HHHHHHHHH-hhccchhhhcccC-cC---cccCCHHHHHHHHHhCCceE
Q 044174 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLM-ATIFMELAN-EQLITEAELDSFN-LP---IYSASSEEMVKLVDKNGHFS 254 (332)
Q Consensus 181 pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l-~~al~~mv~-eGli~~e~~d~fn-~P---~y~ps~~E~~~~ie~~G~F~ 254 (332)
|||++++...++++... ...+++.. ...+.-+.. -|. . +.+. ++ --+++.+|+.+++++.| |+
T Consensus 174 pGG~l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~---~~y~~l~~s~~~f~s~~el~~ll~~aG-F~ 242 (261)
T PLN02233 174 PGSRVSILDFNKSTQPF-----TTSMQEWMIDNVVVPVATGYGL--A---KEYEYLKSSINEYLTGEELEKLALEAG-FS 242 (261)
T ss_pred cCcEEEEEECCCCCcHH-----HHHHHHHHHhhhhhHHHHHhCC--h---HHHHHHHHHHHhcCCHHHHHHHHHHCC-CC
Confidence 99999999877654321 11111111 111110100 011 0 1110 00 12789999999999999 88
Q ss_pred EeEEE
Q 044174 255 IKTVE 259 (332)
Q Consensus 255 I~~le 259 (332)
+.+..
T Consensus 243 ~~~~~ 247 (261)
T PLN02233 243 SAKHY 247 (261)
T ss_pred EEEEE
Confidence 65543
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.70 E-value=2.6e-07 Score=89.14 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=92.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc----ccccceeeecCCcc
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP----QQREYYSAGVPGSF 105 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~----~~~~~f~~~vpgSF 105 (332)
.-+|+|+|||+|..++.++.. + +. .|+--| |+-.+-..|+... ....+ .-.++++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~------------g-----~~-~v~GiD-pS~~ml~q~~~~~~~~~~~~~v--~~~~~~i 180 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGH------------G-----AK-SLVGID-PTVLFLCQFEAVRKLLDNDKRA--ILEPLGI 180 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHc------------C-----CC-EEEEEc-CCHHHHHHHHHHHHHhccCCCe--EEEECCH
Confidence 469999999999987655321 1 11 233333 2223333332211 11111 1133333
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
-+ +-+.+++|.|+|+.+|||+.. | ..+|+.=++-|+|||+|
T Consensus 181 e~-lp~~~~FD~V~s~gvL~H~~d-p-------------------------------------~~~L~el~r~LkpGG~L 221 (314)
T TIGR00452 181 EQ-LHELYAFDTVFSMGVLYHRKS-P-------------------------------------LEHLKQLKHQLVIKGEL 221 (314)
T ss_pred HH-CCCCCCcCEEEEcchhhccCC-H-------------------------------------HHHHHHHHHhcCCCCEE
Confidence 33 223468999999999999532 1 12566666889999999
Q ss_pred EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCC
Q 044174 186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTS 265 (332)
Q Consensus 186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~ 265 (332)
|++....+.... . ++ ...+....+...++.||.+++...+++.| |+..++.....+.
T Consensus 222 vletl~i~g~~~------~--------~l--------~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~~~tt 278 (314)
T TIGR00452 222 VLETLVIDGDLN------T--------VL--------VPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDVLKTT 278 (314)
T ss_pred EEEEEEecCccc------c--------cc--------CchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEeccCCC
Confidence 998654321110 0 00 01111223445678899999999999999 9877766544322
Q ss_pred CCCCCccHHHHHHHHH
Q 044174 266 WLEGPIDIKAWTMHVR 281 (332)
Q Consensus 266 ~~~~~~~~~~~a~~iR 281 (332)
.. .+..+.|++
T Consensus 279 ~~-----eqr~t~w~~ 289 (314)
T TIGR00452 279 PE-----EQRKTDWIL 289 (314)
T ss_pred HH-----Hhhhhhhhh
Confidence 11 155667765
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.68 E-value=3.9e-07 Score=84.64 Aligned_cols=163 Identities=14% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc--ccceeeecCCcc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ--REYYSAGVPGSF 105 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~~vpgSF 105 (332)
++..+|+|+|||+|.+++.+...+ ..|..+|+.-|. +-+.....+..... ...-+..+.|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~---------------~~~~~~v~gvD~-S~~ml~~A~~~~~~~~~~~~v~~~~~d~ 118 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNI---------------HHDNCKIIAIDN-SPAMIERCRRHIDAYKAPTPVDVIEGDI 118 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhc---------------CCCCCeEEEEeC-CHHHHHHHHHHHHhcCCCCCeEEEeCCh
Confidence 345789999999999887654321 012234444442 11222222221110 000122234555
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
.+-.+| ..|+++|+.++||++. . +...+|+.-++-|+|||.+
T Consensus 119 ~~~~~~--~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 119 RDIAIE--NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred hhCCCC--CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEE
Confidence 443333 4799999999999763 1 1223566667888999999
Q ss_pred EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcc----cCcCccc-CCHHHHHHHHHhCCceE
Q 044174 186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDS----FNLPIYS-ASSEEMVKLVDKNGHFS 254 (332)
Q Consensus 186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~----fn~P~y~-ps~~E~~~~ie~~G~F~ 254 (332)
++.-.-..+... ..+.+...|.++....-.+++++.. ... ... -|+++..+++++.| |+
T Consensus 161 ~l~e~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~-~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 161 VLSEKFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLEN-VMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred EEEEecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcccCCHHHHHHHHHHcC-ch
Confidence 997432222211 1233444555544433344444432 211 233 38999999999999 65
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.67 E-value=3.4e-07 Score=82.29 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=75.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccc-eeeecCCccccC
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREY-YSAGVPGSFHHR 108 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~-f~~~vpgSFy~~ 108 (332)
.-+|+|+|||+|.+++.+.+. + .+|.--|+-. +.....+.......+ .+..+.+++...
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~------------g-------~~V~gvD~S~-~~i~~a~~~~~~~~~~~v~~~~~d~~~~ 90 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN------------G-------FDVTAWDKNP-MSIANLERIKAAENLDNLHTAVVDLNNL 90 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC------------C-------CEEEEEeCCH-HHHHHHHHHHHHcCCCcceEEecChhhC
Confidence 468999999999999887632 0 1223333311 111111111100000 022222333332
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
.+ ++++|+++|+.++||+.. .|...+++.-++-|+|||++++.
T Consensus 91 ~~-~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 91 TF-DGEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred Cc-CCCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 23 357999999999999742 13345666667778899996554
Q ss_pred -ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174 189 -MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 189 -~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 259 (332)
.....+ .+. . -. |-+..+.+|+++.++ | |++.+.+
T Consensus 134 ~~~~~~~-~~~-~------------------------------~~-~~~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 134 AAMDTAD-YPC-T------------------------------VG-FPFAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred EEecCCC-CCC-C------------------------------CC-CCCccCHHHHHHHhC--C-CeEEEee
Confidence 333211 100 0 01 235678999999887 7 8876664
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.67 E-value=5e-07 Score=87.42 Aligned_cols=155 Identities=8% Similarity=0.031 Sum_probs=87.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCccc
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFH 106 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy 106 (332)
+..+|+|+|||+|..+..+... ..+|+--|.-.. .-...+...... .--+.-+-+++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-------------------g~~V~GID~s~~-~i~~Ar~~~~~~~~~~~i~~~~~dae 190 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-------------------GATVTGVDAVDK-NVKIARLHADMDPVTSTIEYLCTTAE 190 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-------------------CCEEEEEeCCHH-HHHHHHHHHHhcCcccceeEEecCHH
Confidence 3469999999999988765421 123333332211 111111110000 001223345555
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
+-.++++++|+|+|..+|||+...+ .||+.-++-|||||+++
T Consensus 191 ~l~~~~~~FD~Vi~~~vLeHv~d~~--------------------------------------~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 191 KLADEGRKFDAVLSLEVIEHVANPA--------------------------------------EFCKSLSALTIPNGATV 232 (322)
T ss_pred HhhhccCCCCEEEEhhHHHhcCCHH--------------------------------------HHHHHHHHHcCCCcEEE
Confidence 5556788999999999999966521 35666667788999999
Q ss_pred EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEE
Q 044174 187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le 259 (332)
+....+.. .. .+..+.. .+.+. +.+.. -...| .+.+++|++.++++.| |++..+.
T Consensus 233 ist~nr~~--------~~-~~~~i~~--~eyi~-~~lp~-----gth~~~~f~tp~eL~~lL~~aG-f~i~~~~ 288 (322)
T PLN02396 233 LSTINRTM--------RA-YASTIVG--AEYIL-RWLPK-----GTHQWSSFVTPEELSMILQRAS-VDVKEMA 288 (322)
T ss_pred EEECCcCH--------HH-HHHhhhh--HHHHH-hcCCC-----CCcCccCCCCHHHHHHHHHHcC-CeEEEEe
Confidence 99875421 01 1111100 01111 11111 11122 4789999999999999 9998887
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.57 E-value=1.2e-06 Score=85.22 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=89.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR 108 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~ 108 (332)
...+|+|+|||+|..++.+++.. +..+|...|+-. +.....+......+ +..+.|+..+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-----------------~~~~VtgVD~S~-~mL~~A~~k~~~~~--i~~i~gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-----------------DAKNVTILDQSP-HQLAKAKQKEPLKE--CKIIEGDAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-----------------CCCEEEEEECCH-HHHHHHHHhhhccC--CeEEeccHHhC
Confidence 35799999999999887664321 113455566522 22222322211111 12256777777
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
-+|++++|+++|+.++|++... ...|+.-.+-|+|||++++.
T Consensus 173 p~~~~sFDvVIs~~~L~~~~d~--------------------------------------~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 173 PFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CCCCCceeEEEEcChhhhCCCH--------------------------------------HHHHHHHHHhcCCCcEEEEE
Confidence 7889999999999999985431 12455566778899999876
Q ss_pred ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC
Q 044174 189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP 263 (332)
Q Consensus 189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p 263 (332)
-....+ . .+..-+.+ .-..+|+.+|+.+.+++.| |+..+++.+.|
T Consensus 215 ~~~~p~-----------~--~~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i~~ 259 (340)
T PLN02490 215 GPVHPT-----------F--WLSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRIGP 259 (340)
T ss_pred EecCcc-----------h--hHHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEcCh
Confidence 322111 0 01111110 0113589999999999999 98877776543
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.56 E-value=6.5e-07 Score=81.24 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=82.8
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCccccCC
Q 044174 32 RLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSFHHRL 109 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSFy~~l 109 (332)
+|+|+|||+|..+..+++.. +..+|.-.|+ +-+.-...+.. ... -.--+..+.+.+....
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-----------------~~~~v~gid~-s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-----------------PHLQLHGYTI-SPEQAEVGRERIRALGLQGRIRIFYRDSAKDP 63 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-----------------CCCEEEEEEC-CHHHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence 69999999999877664421 1223344444 11111111111 100 0001112223333333
Q ss_pred cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174 110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
+| +++|+++|..++|++.. +..+|+.-++-|+|||++++.-
T Consensus 64 ~~-~~fD~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 FP-DTYDLVFGFEVIHHIKD--------------------------------------KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CC-CCCCEeehHHHHHhCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence 34 48999999999998533 2346667778889999999875
Q ss_pred cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
....... . . ..-..+.|+++.+|+.+.+++.| |++...+.+.
T Consensus 105 ~~~~~~~---~----------------------~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~ 146 (224)
T smart00828 105 FIANLLS---A----------------------I-----EHEETTSYLVTREEWAELLARNN-LRVVEGVDAS 146 (224)
T ss_pred cccccCc---c----------------------c-----cccccccccCCHHHHHHHHHHCC-CeEEEeEECc
Confidence 4321100 0 0 00113557899999999999999 9998877654
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.54 E-value=3e-07 Score=70.90 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=57.3
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCcCCC
Q 044174 34 ADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQS 113 (332)
Q Consensus 34 aD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lfP~~ 113 (332)
+|+|||+|.++..+.+. +...|+-.|.-.. .....+....... +.-+-+++..-.||++
T Consensus 1 LdiG~G~G~~~~~l~~~------------------~~~~v~~~D~~~~-~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR------------------GGASVTGIDISEE-MLEQARKRLKNEG--VSFRQGDAEDLPFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT------------------TTCEEEEEES-HH-HHHHHHHHTTTST--EEEEESBTTSSSS-TT
T ss_pred CEecCcCCHHHHHHHhc------------------cCCEEEEEeCCHH-HHHHHHhcccccC--chheeehHHhCccccc
Confidence 69999999999887653 0122222222111 1111111111111 1146677888899999
Q ss_pred ceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 114 SIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 114 svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
|+|+++|+.++||+ + |...+++.=++-|||||++++
T Consensus 60 sfD~v~~~~~~~~~---~-----------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL---E-----------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -EEEEEEESHGGGS---S-----------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccceeec---c-----------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999997 1 334566667788889999985
No 26
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.48 E-value=1.5e-06 Score=78.75 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=91.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcccc
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSFHH 107 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSFy~ 107 (332)
..+|+|+|||+|..+..+.... ++..+++..|+..+-. ...+.. ... ..--+..+-+++..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~----------------~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV----------------GKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA 114 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc----------------CCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc
Confidence 4799999999999887764422 1134566666633211 122221 110 00112234456666
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
..++++++|++++++++|++++.+ .+|+.-.+-|+|||++++
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~~~~~--------------------------------------~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNVPDID--------------------------------------KALREMYRVLKPGGRLVI 156 (239)
T ss_pred CCCCCCCccEEEEecccccCCCHH--------------------------------------HHHHHHHHhccCCcEEEE
Confidence 667888999999999999865422 345555677889999988
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHH-HHH-hh-ccch--hhhccc-CcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFME-LAN-EQ-LITE--AELDSF-NLPIYSASSEEMVKLVDKNGHFSIKTVELT 261 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~-mv~-eG-li~~--e~~d~f-n~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 261 (332)
.-...++... +..+...+.. +.. -+ .... +....+ +.--.+++.+++..++++.| |++.+...+
T Consensus 157 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 226 (239)
T PRK00216 157 LEFSKPTNPP---------LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNL 226 (239)
T ss_pred EEecCCCchH---------HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeee
Confidence 7554432210 1111121111 000 00 0000 000000 00123579999999999999 998777754
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.47 E-value=3.9e-06 Score=75.27 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=57.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL 109 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l 109 (332)
+.+|+|+|||+|.+++.+++. + .+|+--|.-. +.-...+.......+=+....+..-..-
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~------------g-------~~V~~iD~s~-~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 90 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA------------G-------YDVRAWDHNP-ASIASVLDMKARENLPLRTDAYDINAAA 90 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC------------C-------CeEEEEECCH-HHHHHHHHHHHHhCCCceeEeccchhcc
Confidence 469999999999999887631 0 1334444421 2222222111110000111111111111
Q ss_pred cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174 110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
+ ++++|+++|+.++||++. .++..+++.-++-|+|||++++..
T Consensus 91 ~-~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 91 L-NEDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred c-cCCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2 357999999999999643 134456777778889999966543
No 28
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.45 E-value=2.2e-05 Score=77.73 Aligned_cols=130 Identities=6% Similarity=0.040 Sum_probs=79.4
Q ss_pred CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174 112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG 191 (332)
Q Consensus 112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g 191 (332)
++++|.++|...+||+.. +++..+++.-.+-|+|||++++...+
T Consensus 226 ~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 478999999988888521 23445666777888899999999877
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEEEeCCCCCCCCC
Q 044174 192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGP 270 (332)
Q Consensus 192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~~~ 270 (332)
.+...... . .-++.+.+|- +.|+.+++....+ .| |.|+.++.+.+
T Consensus 270 ~~~~~~~~------------~-------------~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~~------- 315 (383)
T PRK11705 270 SNKTDTNV------------D-------------PWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNFGA------- 315 (383)
T ss_pred CCCCCCCC------------C-------------CCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecChh-------
Confidence 65421100 0 0123344563 7899999999877 46 99988876532
Q ss_pred ccHHHHHHHHHHHHhh--HHHhhhCHHHHHHHHHHHHHHHHhch
Q 044174 271 IDIKAWTMHVRAAMEA--MFSKHFRIEIIDEMFNRLIRRLFEFS 312 (332)
Q Consensus 271 ~~~~~~a~~iRa~~ep--ll~~hfg~~i~delf~r~~~~v~~~l 312 (332)
.+++++..|.+.|... -+.+-+|++.. ..+..|-...+...
T Consensus 316 hy~~TL~~W~~~f~~~~~~~~~~~~~~~~-r~w~~yl~~~~~~F 358 (383)
T PRK11705 316 DYDRTLMAWHENFEAAWPELADNYSERFY-RMWRYYLLSCAGAF 358 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHH
Confidence 2446666776555443 12334554432 23444444444433
No 29
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.43 E-value=6.1e-07 Score=83.00 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=62.0
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccccceeeecCCccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQREYYSAGVPGSFH 106 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~~~f~~~vpgSFy 106 (332)
....+|+|+|||+|..|+.+... . .|...|.--|.-. +-..+.+.. ......-+.-+-|+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~--------~--------~~~~~v~~vD~s~-~ML~~a~~k~~~~~~~~i~~v~~da~ 108 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARR--------V--------GPNGKVVGVDISP-GMLEVARKKLKREGLQNIEFVQGDAE 108 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGG--------S--------S---EEEEEES-H-HHHHHHHHHHHHTT--SEEEEE-BTT
T ss_pred CCCCEEEEeCCChHHHHHHHHHH--------C--------CCccEEEEecCCH-HHHHHHHHHHHhhCCCCeeEEEcCHH
Confidence 44579999999999988776321 1 1223444443321 112222211 1111114455667778
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
+-.||++|+|.+.+++.+|-+...+ ..|+.-.+-|||||+++
T Consensus 109 ~lp~~d~sfD~v~~~fglrn~~d~~--------------------------------------~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 109 DLPFPDNSFDAVTCSFGLRNFPDRE--------------------------------------RALREMYRVLKPGGRLV 150 (233)
T ss_dssp B--S-TT-EEEEEEES-GGG-SSHH--------------------------------------HHHHHHHHHEEEEEEEE
T ss_pred HhcCCCCceeEEEHHhhHHhhCCHH--------------------------------------HHHHHHHHHcCCCeEEE
Confidence 8889999999999999999865422 23444556788999999
Q ss_pred EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhccc----CcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174 187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSF----NLPIYSASSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f----n~P~y~ps~~E~~~~ie~~G~F~I~~le 259 (332)
+.-.++++... ...++...-..+.=. --+++..+ .+.+ ..-.-||+.+|+.+.+++.| |+..+.+
T Consensus 151 ile~~~p~~~~-----~~~~~~~y~~~ilP~-~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~ 219 (233)
T PF01209_consen 151 ILEFSKPRNPL-----LRALYKFYFKYILPL-IGRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYR 219 (233)
T ss_dssp EEEEEB-SSHH-----HHHHHHH------------------------------------------------------
T ss_pred EeeccCCCCch-----hhceeeeeecccccc-cccccccc-cccccccccccccccccccccccccccc-ccccccc
Confidence 98888765321 112222111111000 01222222 1111 12235789999999999999 8754443
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.42 E-value=3.9e-06 Score=75.26 Aligned_cols=165 Identities=14% Similarity=0.179 Sum_probs=91.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCcccc
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFHH 107 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy~ 107 (332)
+..+|+|+|||+|..+..++... +...+++.-|.-. +.-...+. .....+ +.-+.+++..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~----------------~~~~~~~~iD~~~-~~~~~~~~~~~~~~~--i~~~~~d~~~ 99 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA----------------PDRGKVTGVDFSS-EMLEVAKKKSELPLN--IEFIQADAEA 99 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc----------------CCCceEEEEECCH-HHHHHHHHHhccCCC--ceEEecchhc
Confidence 46799999999999887664321 1114555555422 22222111 111111 1223466666
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
..++++++|+++++..+|+... ...+|+.-.+-|+|||++++
T Consensus 100 ~~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 100 LPFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 6678889999999999998543 12356677788899999997
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHH-HHH--hhccchhhhcccC----cCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFME-LAN--EQLITEAELDSFN----LPIYSASSEEMVKLVDKNGHFSIKTVEL 260 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~-mv~--eGli~~e~~d~fn----~P~y~ps~~E~~~~ie~~G~F~I~~le~ 260 (332)
.-.-..... .+..+.+.+.. +.. .+..... .+.+. ...-+++.+|++.++++.| |++...+.
T Consensus 142 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~ 210 (223)
T TIGR01934 142 LEFSKPANA---------LLKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRS 210 (223)
T ss_pred EEecCCCch---------hhHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeee
Confidence 654322211 12222222221 110 0111100 11111 0112578999999999999 98877764
Q ss_pred e
Q 044174 261 T 261 (332)
Q Consensus 261 ~ 261 (332)
.
T Consensus 211 ~ 211 (223)
T TIGR01934 211 L 211 (223)
T ss_pred e
Confidence 4
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.41 E-value=1.9e-06 Score=69.15 Aligned_cols=95 Identities=22% Similarity=0.342 Sum_probs=65.9
Q ss_pred ceEEEeecCCCCcchHHHHH--------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc
Q 044174 30 IIRLADLGCAVGSNTINAMQ--------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE 95 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~ 95 (332)
.-+|+|+|||+|..++.+.+ ..++..+++..... ..+.+++...|+ ..++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~---------- 67 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDF---------- 67 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTT----------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCccc----------
Confidence 36899999999999999987 56666666653321 245677777776 211111
Q ss_pred ceeeecCCccccCCcCCCceeEEEecC-ccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 044174 96 YYSAGVPGSFHHRLFPQSSIHFAHCSY-ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA 174 (332)
Q Consensus 96 ~f~~~vpgSFy~~lfP~~svd~~~S~~-alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~ 174 (332)
.+.+|+++++. ++|++-.. .+...+|+.
T Consensus 68 ----------------~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~ 96 (112)
T PF12847_consen 68 ----------------LEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLER 96 (112)
T ss_dssp ----------------SSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHH
T ss_pred ----------------CCCCCEEEECCCccccccch-----------------------------------hHHHHHHHH
Confidence 12399999999 67753221 355667888
Q ss_pred HHHhhccCCeEEEEe
Q 044174 175 RAEEIVSGGMMVIIM 189 (332)
Q Consensus 175 Ra~EL~pGG~mvl~~ 189 (332)
-.+-|+|||+|++.-
T Consensus 97 ~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 97 IRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhcCCCcEEEEEE
Confidence 889999999999863
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.39 E-value=4.2e-06 Score=79.49 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174 112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG 191 (332)
Q Consensus 112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g 191 (332)
++++|+++|+.++|++.. .++..+|+.-.+-|+|||++++....
T Consensus 182 ~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred cCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 568999999999999742 24456777777889999997775433
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC-cccCCHHHHHHHHHhCCceEEeEEE
Q 044174 192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP-IYSASSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~y~ps~~E~~~~ie~~G~F~I~~le 259 (332)
..+..+ ...| -+..+.+|+++.+.. |+|.+.+
T Consensus 226 ~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 226 DTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred ccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 221100 1123 356779999998853 8887774
No 33
>PRK06202 hypothetical protein; Provisional
Probab=98.33 E-value=1.1e-05 Score=74.03 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=49.6
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccc-eeeecCCccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREY-YSAGVPGSFH 106 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~-f~~~vpgSFy 106 (332)
.+..+|+|+|||+|..+..+.... .+ . .+..+|.-.|+-. +.-...+......++ +..+....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~----~-----g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~l- 123 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RR----D-----GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDEL- 123 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----Hh----C-----CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEecccc-
Confidence 456799999999999887654321 11 1 2345677777633 333333333221111 222211111
Q ss_pred cCCcCCCceeEEEecCccccccC
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSK 129 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~ 129 (332)
.++++++|+++|+.+|||+..
T Consensus 124 --~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 124 --VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred --cccCCCccEEEECCeeecCCh
Confidence 237889999999999999754
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.31 E-value=8.2e-05 Score=70.49 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHH
Q 044174 166 KDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMV 244 (332)
Q Consensus 166 ~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~ 244 (332)
+++..|++.-++-|+|||++++...+..+...... ......| +..+-+|- +.||.+|+.
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~-------~~~~~~~-------------i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE-------RRSSSDF-------------IRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC-------TTCCCHH-------------HHHHTSTTS---BHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecccccccchhh-------cCCCceE-------------EEEeeCCCCCCCCHHHHH
Confidence 45677888889999999999999777543210000 0000011 12233444 678999999
Q ss_pred HHHHhCCceEEeEEEEe
Q 044174 245 KLVDKNGHFSIKTVELT 261 (332)
Q Consensus 245 ~~ie~~G~F~I~~le~~ 261 (332)
..+++.| |+|...+.+
T Consensus 203 ~~~~~~~-l~v~~~~~~ 218 (273)
T PF02353_consen 203 RAAEDAG-LEVEDVENL 218 (273)
T ss_dssp HHHHHTT--EEEEEEE-
T ss_pred HHHhcCC-EEEEEEEEc
Confidence 9999999 999988865
No 35
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.29 E-value=1.9e-05 Score=75.51 Aligned_cols=153 Identities=11% Similarity=0.159 Sum_probs=89.8
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cccc-ccceeeecCCcc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQ-REYYSAGVPGSF 105 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~-~~~f~~~vpgSF 105 (332)
.+..+|+|+|||+|..++.+.+. .|..++..-|+|. --...+. +... ..--+..++|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~-----------------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~rv~~~~~d~ 208 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH-----------------FPELDSTILNLPG--AIDLVNENAAEKGVADRMRGIAVDI 208 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH-----------------CCCCEEEEEecHH--HHHHHHHHHHhCCccceEEEEecCc
Confidence 34579999999999887766432 2456777778862 3333322 1111 122466788999
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
+...+|. .|+++.+..+|-... .+-..+|+.=++-|+|||++
T Consensus 209 ~~~~~~~--~D~v~~~~~lh~~~~------------------------------------~~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 209 YKESYPE--ADAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred cCCCCCC--CCEEEeEhhhhcCCh------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 9766776 499988888883211 01224566667889999999
Q ss_pred EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEe
Q 044174 186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIK 256 (332)
Q Consensus 186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~ 256 (332)
++.=.-.++... . .+..+...+..+ |.. + .+.-+++.+|+.+++++.| |+..
T Consensus 251 ~i~d~~~~~~~~--~-----~~~~~~~~~~~~---~~~-------~-~~~~~~~~~e~~~ll~~aG-f~~v 302 (306)
T TIGR02716 251 LILDMVIDDPEN--P-----NFDYLSHYILGA---GMP-------F-SVLGFKEQARYKEILESLG-YKDV 302 (306)
T ss_pred EEEEeccCCCCC--c-----hhhHHHHHHHHc---ccc-------c-ccccCCCHHHHHHHHHHcC-CCee
Confidence 887432222110 0 111222222111 211 0 1123556899999999999 8643
No 36
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.26 E-value=1.3e-06 Score=78.04 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=24.0
Q ss_pred cccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 235 IYSASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 235 ~y~ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
..++|.+|+.+++++.| |+|...+.++
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 45789999999999999 9999988774
No 37
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.18 E-value=7.4e-06 Score=73.66 Aligned_cols=91 Identities=20% Similarity=0.324 Sum_probs=60.2
Q ss_pred ceEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccce
Q 044174 30 IIRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYY 97 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f 97 (332)
+-+++|+|||.|.||+-++ ...++.+.+.....+ -+|+...-|+-.-++
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~-----l~i~~~~~Dl~~~~~-------------- 91 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG-----LDIRTRVADLNDFDF-------------- 91 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT------TEEEEE-BGCCBS---------------
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC-----ceeEEEEecchhccc--------------
Confidence 5699999999999999998 345555555433322 237777777633222
Q ss_pred eeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044174 98 SAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAE 177 (332)
Q Consensus 98 ~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~ 177 (332)
| +.+|+++|...+|.|.. + .+..+++...+
T Consensus 92 -------------~-~~yD~I~st~v~~fL~~--~----------------------------------~~~~i~~~m~~ 121 (192)
T PF03848_consen 92 -------------P-EEYDFIVSTVVFMFLQR--E----------------------------------LRPQIIENMKA 121 (192)
T ss_dssp -------------T-TTEEEEEEESSGGGS-G--G----------------------------------GHHHHHHHHHH
T ss_pred -------------c-CCcCEEEEEEEeccCCH--H----------------------------------HHHHHHHHHHh
Confidence 2 47899999999999764 1 12235566668
Q ss_pred hhccCCeEEEEe
Q 044174 178 EIVSGGMMVIIM 189 (332)
Q Consensus 178 EL~pGG~mvl~~ 189 (332)
.++|||.++++.
T Consensus 122 ~~~pGG~~li~~ 133 (192)
T PF03848_consen 122 ATKPGGYNLIVT 133 (192)
T ss_dssp TEEEEEEEEEEE
T ss_pred hcCCcEEEEEEE
Confidence 899999988854
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.17 E-value=7.3e-05 Score=67.82 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=25.1
Q ss_pred cCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 233 LPIYSASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 233 ~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
.++|+++.+|+.+++++.| |++...+.+.
T Consensus 180 ~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 180 TSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred cceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 5678899999999999999 9998887553
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.14 E-value=4.2e-05 Score=71.66 Aligned_cols=155 Identities=14% Similarity=0.050 Sum_probs=84.2
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc-ccccceeeecCCccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-QQREYYSAGVPGSFH 106 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~-~~~~~f~~~vpgSFy 106 (332)
...-+|+|+|||+|..++.+.... .+.-+|+--|.-. ..-...+... ...---+.-+.|++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~----------------g~~~~v~gvD~s~-~~l~~A~~~~~~~g~~~v~~~~~d~~ 138 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRV----------------GPTGKVIGVDMTP-EMLAKARANARKAGYTNVEFRLGEIE 138 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh----------------CCCCEEEEECCCH-HHHHHHHHHHHHcCCCCEEEEEcchh
Confidence 445799999999998776543211 1123444444421 1122222110 000001223445666
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
.-.+|++++|+++|+.++||....+ ..|+.-.+-|+|||+++
T Consensus 139 ~l~~~~~~fD~Vi~~~v~~~~~d~~--------------------------------------~~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 139 ALPVADNSVDVIISNCVINLSPDKE--------------------------------------RVFKEAFRVLKPGGRFA 180 (272)
T ss_pred hCCCCCCceeEEEEcCcccCCCCHH--------------------------------------HHHHHHHHHcCCCcEEE
Confidence 6567889999999999999853311 13334446788999999
Q ss_pred EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174 187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT 261 (332)
Q Consensus 187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 261 (332)
+.-....... .+.+...+. +. .|. .....+.+|+..++++.| |...++...
T Consensus 181 i~~~~~~~~~----------~~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~~~ 231 (272)
T PRK11873 181 ISDVVLRGEL----------PEEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVDITIQPK 231 (272)
T ss_pred EEEeeccCCC----------CHHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCceEEEec
Confidence 8743321110 011221111 10 011 112457899999999999 887766543
No 40
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.11 E-value=0.00015 Score=65.66 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.7
Q ss_pred cCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 233 LPIYSASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 233 ~P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
.+.++.+.+++.+++++.| |++...+.+.
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 216 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERIS 216 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence 4567789999999999999 9998887664
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=0.00065 Score=64.55 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=108.2
Q ss_pred CCCceEEEeecCCCCcchHHHHHHH-------------HHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc
Q 044174 27 ASNIIRLADLGCAVGSNTINAMQDV-------------LEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ 93 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~~~i-------------i~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~ 93 (332)
..+-.+|+|+|||-|..++.+++.- .+..+++..+.+. .-.++|.+-|.+ ||+.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl---~~~v~v~l~d~r--d~~e-------- 136 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL---EDNVEVRLQDYR--DFEE-------- 136 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC---CcccEEEecccc--cccc--------
Confidence 4567999999999999999998653 2222333333331 225777777764 3433
Q ss_pred ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174 94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN 173 (332)
Q Consensus 94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~ 173 (332)
.+|-+.|-=+++- -..+.|..|++
T Consensus 137 --------------------~fDrIvSvgmfEh------------------------------------vg~~~~~~ff~ 160 (283)
T COG2230 137 --------------------PFDRIVSVGMFEH------------------------------------VGKENYDDFFK 160 (283)
T ss_pred --------------------ccceeeehhhHHH------------------------------------hCcccHHHHHH
Confidence 2566666333322 22345677888
Q ss_pred HHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC-cccCCHHHHHHHHHhCCc
Q 044174 174 ARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP-IYSASSEEMVKLVDKNGH 252 (332)
Q Consensus 174 ~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~y~ps~~E~~~~ie~~G~ 252 (332)
.-.+-|+|||+|++--.+....... ....| ++.+-+| -+.||..++....++.|
T Consensus 161 ~~~~~L~~~G~~llh~I~~~~~~~~-----------~~~~~-------------i~~yiFPgG~lPs~~~i~~~~~~~~- 215 (283)
T COG2230 161 KVYALLKPGGRMLLHSITGPDQEFR-----------RFPDF-------------IDKYIFPGGELPSISEILELASEAG- 215 (283)
T ss_pred HHHhhcCCCceEEEEEecCCCcccc-----------cchHH-------------HHHhCCCCCcCCCHHHHHHHHHhcC-
Confidence 8899999999999998876653210 01111 1222334 36789999999999999
Q ss_pred eEEeEEEEeCCCCCCCCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHhchhhh
Q 044174 253 FSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKV 315 (332)
Q Consensus 253 F~I~~le~~~p~~~~~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~~l~~~ 315 (332)
|.|...+.+.|+ +++++..|-..+-...=+ .+...-++++.+++..+...-..+
T Consensus 216 ~~v~~~~~~~~h-------Ya~Tl~~W~~~f~~~~~~--a~~~~~e~~~r~w~~yl~~~~~~F 269 (283)
T COG2230 216 FVVLDVESLRPH-------YARTLRLWRERFEANRDE--AIALYDERFYRMWELYLAACAAAF 269 (283)
T ss_pred cEEehHhhhcHH-------HHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHh
Confidence 998777766332 344444443322221111 122223444455666666544443
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.04 E-value=3.8e-05 Score=77.75 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=52.4
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
.+|++++|+++|+.++||++. .++..+|+.-++-|+|||+|++.
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 468899999999999999754 13445777777889999999885
Q ss_pred ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCC
Q 044174 189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNG 251 (332)
Q Consensus 189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G 251 (332)
=..-... | .+....-|..+++..+++.++.++|
T Consensus 142 d~~~~~~-------------------------~-----~~~~~~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 142 ESCFHQS-------------------------G-----DSKRKNNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred eccCCCC-------------------------C-----cccccCCCCeecChHHHHHHHHHhe
Confidence 3211110 0 0000123556677889999998877
No 43
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.04 E-value=3.8e-05 Score=65.61 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=60.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC---CchHHHHhcCcccccceeeecCCcc
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS---NDFNTLFTSLPQQREYYSAGVPGSF 105 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~---NDFn~lf~~l~~~~~~f~~~vpgSF 105 (332)
+..+|+|+|||+|..++.+... . .|..+++.-|.-. +--+..++.+.-. .+..+-+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~-------~---------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~---ni~~~~~d~ 63 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKE-------L---------NPGAKIIGVDISEEMIEYAKKRAKELGLD---NIEFIQGDI 63 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHH-------S---------TTTSEEEEEESSHHHHHHHHHHHHHTTST---TEEEEESBT
T ss_pred CCCEEEEecCcCcHHHHHHHHh-------c---------CCCCEEEEEECcHHHHHHhhccccccccc---ccceEEeeh
Confidence 4689999999999999887641 0 1123344443322 1111111111111 111122333
Q ss_pred cc--CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174 106 HH--RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG 183 (332)
Q Consensus 106 y~--~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG 183 (332)
.+ +.++ +.+|+++++.++||+.. ...+|+.-.+-|++||
T Consensus 64 ~~l~~~~~-~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 64 EDLPQELE-EKFDIIISNGVLHHFPD--------------------------------------PEKVLKNIIRLLKPGG 104 (152)
T ss_dssp TCGCGCSS-TTEEEEEEESTGGGTSH--------------------------------------HHHHHHHHHHHEEEEE
T ss_pred hccccccC-CCeeEEEEcCchhhccC--------------------------------------HHHHHHHHHHHcCCCc
Confidence 33 1144 79999999999998543 2345566667888999
Q ss_pred eEEEEecc
Q 044174 184 MMVIIMPG 191 (332)
Q Consensus 184 ~mvl~~~g 191 (332)
++++....
T Consensus 105 ~~i~~~~~ 112 (152)
T PF13847_consen 105 ILIISDPN 112 (152)
T ss_dssp EEEEEEEE
T ss_pred EEEEEECC
Confidence 99998766
No 44
>PRK05785 hypothetical protein; Provisional
Probab=98.03 E-value=4e-05 Score=70.46 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=47.4
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL 109 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l 109 (332)
.-+|+|+|||+|..+..+.+.. ..+|+--|+ +-+.-.+.+. +.-+ +-|++....
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~------------------~~~v~gvD~-S~~Ml~~a~~----~~~~---~~~d~~~lp 105 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF------------------KYYVVALDY-AENMLKMNLV----ADDK---VVGSFEALP 105 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc------------------CCEEEEECC-CHHHHHHHHh----ccce---EEechhhCC
Confidence 5699999999999887664431 013333442 2222222221 1112 346677778
Q ss_pred cCCCceeEEEecCccccccC
Q 044174 110 FPQSSIHFAHCSYALHWLSK 129 (332)
Q Consensus 110 fP~~svd~~~S~~alHWLs~ 129 (332)
||++|+|+++|++++||+..
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCCCCEEEEEecChhhccCC
Confidence 99999999999999999654
No 45
>PRK06922 hypothetical protein; Provisional
Probab=98.02 E-value=1.3e-05 Score=83.55 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=66.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc--
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH-- 107 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~-- 107 (332)
..+|+|+|||+|..+..+.+. .|..+|+--|+..+ .-...+........-+..+-|+.-+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-----------------~P~~kVtGIDIS~~-MLe~Ararl~~~g~~ie~I~gDa~dLp 480 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-----------------TEDKRIYGIDISEN-VIDTLKKKKQNEGRSWNVIKGDAINLS 480 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-----------------CCCCEEEEEECCHH-HHHHHHHHhhhcCCCeEEEEcchHhCc
Confidence 479999999999877655331 12344455554432 1111111100000001112233322
Q ss_pred CCcCCCceeEEEecCccccc-cCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 108 RLFPQSSIHFAHCSYALHWL-SKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWL-s~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
..||++++|++++++++||+ +.+|..-. .++ ..|...+|+.-.+-|||||+++
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCCCcEEE
Confidence 23788999999999999975 44552210 000 2467778888888999999999
Q ss_pred EEe
Q 044174 187 IIM 189 (332)
Q Consensus 187 l~~ 189 (332)
+.-
T Consensus 535 I~D 537 (677)
T PRK06922 535 IRD 537 (677)
T ss_pred EEe
Confidence 963
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.94 E-value=0.00011 Score=66.21 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
+.+|++++|.++++++.+|...... +.+ .+...||+.=++-|+|||++++
T Consensus 105 ~~~~~~~~D~V~~~~~~p~~~~~~~-----------~~~-------------------~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 105 DMFPDGSLDRIYLNFPDPWPKKRHH-----------KRR-------------------LVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHcCccccceEEEECCCCCCCcccc-----------ccc-------------------cCCHHHHHHHHHHcCCCCEEEE
Confidence 4478889999999988888553110 000 0123466666778889999998
Q ss_pred EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccc
Q 044174 188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLIT 224 (332)
Q Consensus 188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~ 224 (332)
.... .+.+...+..|...|+-.
T Consensus 155 ~~~~---------------~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 155 ATDW---------------EGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred EcCC---------------HHHHHHHHHHHHhCcccc
Confidence 7632 124455666666666543
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.92 E-value=1.1e-05 Score=63.69 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=43.8
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc---cceeeecCCccccCCc
Q 044174 34 ADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR---EYYSAGVPGSFHHRLF 110 (332)
Q Consensus 34 aD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~---~~f~~~vpgSFy~~lf 110 (332)
+|+|||+|..+..+++.. |..++...|.-.+=-...=+.+.... ...+...........
T Consensus 1 LdiGcG~G~~~~~l~~~~-----------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~- 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-----------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD- 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC-
T ss_pred CEeCccChHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc-
Confidence 599999999998776532 34555555544322211001111110 112222222222222
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
+.+++|+|+++.++||+. |+..+|+.-++-|+|||++
T Consensus 63 ~~~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 PPESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp C----SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred cccccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 227999999999999981 3345677777889999986
No 48
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.92 E-value=0.0002 Score=64.71 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=54.5
Q ss_pred CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174 112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG 191 (332)
Q Consensus 112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g 191 (332)
++++|+++++.++|+... ...+|+.-.+-|+|||.+++....
T Consensus 110 ~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 478999999998888532 123566666778899999877543
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174 192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL 260 (332)
Q Consensus 192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 260 (332)
+.. .......+. .++ ..+..... ......+.+.+++.+.+++.| |+|..+.-
T Consensus 152 ~~~--------~~~~~~~~~---~~~-~~~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~ 203 (224)
T TIGR01983 152 RTP--------KSYLLAIVG---AEY-ILRIVPKG----THDWEKFIKPSELTSWLESAG-LRVKDVKG 203 (224)
T ss_pred CCc--------hHHHHHHHh---hhh-hhhcCCCC----cCChhhcCCHHHHHHHHHHcC-Ceeeeeee
Confidence 211 010111110 011 11111110 001113558899999999999 99988773
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.87 E-value=0.00011 Score=69.22 Aligned_cols=117 Identities=18% Similarity=0.367 Sum_probs=64.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHH---------HHhcCcccc--cc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNT---------LFTSLPQQR--EY 96 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~---------lf~~l~~~~--~~ 96 (332)
..+++|.|+|||+|--+-.++-.+.+.... . ..+.++|+-.|.-..==.. -++.+|... .|
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~----~----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~y 169 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK----A----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARY 169 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhh----c----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhh
Confidence 456999999999997644333222222111 0 1235677777764311100 011222110 23
Q ss_pred ee----------------eecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHH
Q 044174 97 YS----------------AGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAY 160 (332)
Q Consensus 97 f~----------------~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay 160 (332)
|. .-..+..-+..+|.+++|+|+|.++|||++. |
T Consensus 170 f~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~----------------------------- 219 (264)
T smart00138 170 FSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-P----------------------------- 219 (264)
T ss_pred EEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-H-----------------------------
Confidence 32 1122333344457899999999999999753 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 161 ASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 161 ~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
+....|+.=++-|+|||.|++.
T Consensus 220 ------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 220 ------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ------HHHHHHHHHHHHhCCCeEEEEE
Confidence 1223455555778899999873
No 50
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.87 E-value=0.00052 Score=62.60 Aligned_cols=94 Identities=12% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
+.+.+|+++++..++++.. ...+|+.-.+-|+|||+|++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 5578999999888887432 11345555667789999998876
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174 191 GIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 191 gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le 259 (332)
++.. ......... ...+..++ .. .......+.+.+|+.+++++.| |++....
T Consensus 153 ~~~~--------~~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~ 204 (233)
T PRK05134 153 NRNL--------KSYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDIT 204 (233)
T ss_pred CCCh--------HHHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeee
Confidence 5321 011111111 11111111 10 0111224678999999999999 9988776
No 51
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.86 E-value=0.00013 Score=69.81 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=91.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc----ccceeeecCCcc
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ----REYYSAGVPGSF 105 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~----~~~f~~~vpgSF 105 (332)
.-+|+|+||+.|.-++.+... + +. .|+--| |+-.|...|+.+... ..+|. +|-..
T Consensus 116 gk~VLDIGC~nGY~~frM~~~------------G-----A~-~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~--lplgv 174 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR------------G-----AK-SVIGID-PSPLFYLQFEAIKHFLGQDPPVFE--LPLGV 174 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc------------C-----CC-EEEEEC-CChHHHHHHHHHHHHhCCCccEEE--cCcch
Confidence 369999999999998876421 1 11 233333 555667666665432 22332 34444
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNA-AEEVVNAYASQFAKDMENFLNARAEEIVSGGM 184 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~-~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~ 184 (332)
++-.. .+++|.|||--.| +... |-. .|+.=.+-|++||.
T Consensus 175 E~Lp~-~~~FDtVF~MGVL------------------------YHrr~Pl~---------------~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 175 EDLPN-LGAFDTVFSMGVL------------------------YHRRSPLD---------------HLKQLKDSLRPGGE 214 (315)
T ss_pred hhccc-cCCcCEEEEeeeh------------------------hccCCHHH---------------HHHHHHHhhCCCCE
Confidence 44444 7899999993322 2222 212 23333467899999
Q ss_pred EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEE
Q 044174 185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTV 258 (332)
Q Consensus 185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~l 258 (332)
||++.+..+.+.. .-+++++....++.=||-||..-++..++++| |+-.++
T Consensus 215 LvLETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~ 265 (315)
T PF08003_consen 215 LVLETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRC 265 (315)
T ss_pred EEEEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEE
Confidence 9999776543221 12356666778888899999999999999999 864333
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.83 E-value=0.00011 Score=65.44 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCcchHHHH
Q 044174 30 IIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~ 48 (332)
..+|+|+|||+|..++.+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la 61 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA 61 (181)
T ss_pred CCeEEEecCCCCccHHHHH
Confidence 5799999999999988764
No 53
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.82 E-value=4.8e-05 Score=69.85 Aligned_cols=141 Identities=23% Similarity=0.439 Sum_probs=90.6
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHH---------HhhhhcCCCCCCCceE--EEecCCCCCchHHHHhcCcccccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIK---------NKCHSQCPSSKLPEFQ--VFFNDKTSNDFNTLFTSLPQQREY 96 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~---------~~~~~~~~~~~~~~~~--v~~nDlp~NDFn~lf~~l~~~~~~ 96 (332)
......+|+|||-|.-+-.+...-++.+. +.|+. ++.|++. -+.-|-..-
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~----~qdp~i~~~~~v~DEE~L--------------- 131 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD----AQDPSIETSYFVGDEEFL--------------- 131 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc----cCCCceEEEEEecchhcc---------------
Confidence 44568999999999998887655444331 11221 1223322 222222222
Q ss_pred eeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044174 97 YSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARA 176 (332)
Q Consensus 97 f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra 176 (332)
-|-+||+|++.||.++||....|.... .-.
T Consensus 132 ------------df~ens~DLiisSlslHW~NdLPg~m~--------------------------------------~ck 161 (325)
T KOG2940|consen 132 ------------DFKENSVDLIISSLSLHWTNDLPGSMI--------------------------------------QCK 161 (325)
T ss_pred ------------cccccchhhhhhhhhhhhhccCchHHH--------------------------------------HHH
Confidence 266799999999999999999885432 112
Q ss_pred HhhccCCeEEEEecccCCCCCCCCcchhHHHHH-HHHHHHHHHHhhccchhhhcccCcCcccC--CHHHHHHHHHhCCce
Q 044174 177 EEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDL-MATIFMELANEQLITEAELDSFNLPIYSA--SSEEMVKLVDKNGHF 253 (332)
Q Consensus 177 ~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv~eGli~~e~~d~fn~P~y~p--s~~E~~~~ie~~G~F 253 (332)
..|||.|.|+..|.|-+. ++++ .+--|.+|-.+|-|+ |..-| ...++-.++...| |
T Consensus 162 ~~lKPDg~FiasmlggdT-----------LyELR~slqLAelER~GGiS---------phiSPf~qvrDiG~LL~rAG-F 220 (325)
T KOG2940|consen 162 LALKPDGLFIASMLGGDT-----------LYELRCSLQLAELEREGGIS---------PHISPFTQVRDIGNLLTRAG-F 220 (325)
T ss_pred HhcCCCccchhHHhcccc-----------HHHHHHHhhHHHHHhccCCC---------CCcChhhhhhhhhhHHhhcC-c
Confidence 578899999999998432 3332 344566888888876 43333 4567778899999 7
Q ss_pred EEeEE
Q 044174 254 SIKTV 258 (332)
Q Consensus 254 ~I~~l 258 (332)
..-.+
T Consensus 221 ~m~tv 225 (325)
T KOG2940|consen 221 SMLTV 225 (325)
T ss_pred cccee
Confidence 65333
No 54
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.81 E-value=0.00012 Score=68.21 Aligned_cols=172 Identities=14% Similarity=0.174 Sum_probs=101.4
Q ss_pred CCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc----cccce----e
Q 044174 27 ASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ----QREYY----S 98 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~----~~~~f----~ 98 (332)
....++++|++||+|-.|+.+++.+-+.-. ..+-.|... |+|.=--.... ..+++ +
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~-----------~~~~~V~v~-----Dinp~mL~vgkqRa~~~~l~~~~~~ 161 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFG-----------DRESKVTVL-----DINPHMLAVGKQRAKKRPLKASSRV 161 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccC-----------CCCceEEEE-----eCCHHHHHHHHHHHhhcCCCcCCce
Confidence 355699999999999999998765433211 112233333 44442222211 11222 3
Q ss_pred eecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044174 99 AGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEE 178 (332)
Q Consensus 99 ~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~E 178 (332)
.-+.|.=-...||++++|...+++.+.-..+++. ...+|| +-
T Consensus 162 ~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k----------------------~l~EAY----------------RV 203 (296)
T KOG1540|consen 162 EWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK----------------------ALREAY----------------RV 203 (296)
T ss_pred EEEeCCcccCCCCCCcceeEEEecceecCCCHHH----------------------HHHHHH----------------Hh
Confidence 4466777888899999999999887765333332 233444 57
Q ss_pred hccCCeEEEEecccCCCCCCCCc---chhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEE
Q 044174 179 IVSGGMMVIIMPGIPYGMPYSHL---TNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSI 255 (332)
Q Consensus 179 L~pGG~mvl~~~gr~~~~~~~~~---~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I 255 (332)
|||||+|.+.-...-+..+.... +.-.+.-.+.+.+....+.+..=-|-+. =||+.+|+...+|+.| |..
T Consensus 204 LKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F~~ 276 (296)
T KOG1540|consen 204 LKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-FSS 276 (296)
T ss_pred cCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-Ccc
Confidence 88999999887776553321100 1111223445555544444332111111 3688999999999999 887
Q ss_pred eE-EE
Q 044174 256 KT-VE 259 (332)
Q Consensus 256 ~~-le 259 (332)
.. .|
T Consensus 277 ~~~ye 281 (296)
T KOG1540|consen 277 VNGYE 281 (296)
T ss_pred ccccc
Confidence 65 44
No 55
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.78 E-value=0.00016 Score=67.61 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=91.2
Q ss_pred eEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCce-----EEEecCCCCCchHHHHhcCccc
Q 044174 31 IRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEF-----QVFFNDKTSNDFNTLFTSLPQQ 93 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~-----~v~~nDlp~NDFn~lf~~l~~~ 93 (332)
.+|+|+|||.|--|..++ +..|+.-+++ .++. |+.- .+-+.|.-.+++..
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~d----P~~~~~~~y~l~~~~~~~E~~~~-------- 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMD----PVLEGAIAYRLEYEDTDVEGLTG-------- 157 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcC----chhccccceeeehhhcchhhccc--------
Confidence 779999999999998887 5566666655 2222 2211 23344544444433
Q ss_pred ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174 94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN 173 (332)
Q Consensus 94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~ 173 (332)
.+|.|.|+-.+|- -+|...||.
T Consensus 158 --------------------~fDaVvcsevleH--------------------------------------V~dp~~~l~ 179 (282)
T KOG1270|consen 158 --------------------KFDAVVCSEVLEH--------------------------------------VKDPQEFLN 179 (282)
T ss_pred --------------------ccceeeeHHHHHH--------------------------------------HhCHHHHHH
Confidence 3788888655544 146778999
Q ss_pred HHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCce
Q 044174 174 ARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHF 253 (332)
Q Consensus 174 ~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F 253 (332)
+=++-|+|||+++++-.-|.--. ..+.+ .+.+.+...|-.|.- .+--|++++|+..+++.++ +
T Consensus 180 ~l~~~lkP~G~lfittinrt~lS-----~~~~i--~~~E~vl~ivp~Gth---------~~ekfi~p~e~~~~l~~~~-~ 242 (282)
T KOG1270|consen 180 CLSALLKPNGRLFITTINRTILS-----FAGTI--FLAEIVLRIVPKGTH---------TWEKFINPEELTSILNANG-A 242 (282)
T ss_pred HHHHHhCCCCceEeeehhhhHHH-----hhccc--cHHHHHHHhcCCCCc---------CHHHcCCHHHHHHHHHhcC-c
Confidence 99999999999999987664211 11111 122222224444532 4556789999999999998 8
Q ss_pred EEeEEE
Q 044174 254 SIKTVE 259 (332)
Q Consensus 254 ~I~~le 259 (332)
.|+.+-
T Consensus 243 ~v~~v~ 248 (282)
T KOG1270|consen 243 QVNDVV 248 (282)
T ss_pred chhhhh
Confidence 887766
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.77 E-value=0.00011 Score=58.31 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=14.2
Q ss_pred EEeecCCCCcchHHHHHH
Q 044174 33 LADLGCAVGSNTINAMQD 50 (332)
Q Consensus 33 iaD~GCs~G~ns~~~~~~ 50 (332)
|+|+|||+|.++..+...
T Consensus 1 ILDlgcG~G~~~~~l~~~ 18 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR 18 (101)
T ss_dssp -EEET-TTSHHHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHH
Confidence 799999999999888765
No 57
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.73 E-value=0.00028 Score=67.58 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH-
Q 044174 9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF- 87 (332)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf- 87 (332)
.+|++...++.... +...+|+|+|||+|.-|..+++.... ..+++--|+.. ++-...
T Consensus 48 ~il~~~~~~ia~~~-----~~~~~iLELGcGtG~~t~~Ll~~l~~----------------~~~~~~iDiS~-~mL~~a~ 105 (301)
T TIGR03438 48 AILERHADEIAAAT-----GAGCELVELGSGSSRKTRLLLDALRQ----------------PARYVPIDISA-DALKESA 105 (301)
T ss_pred HHHHHHHHHHHHhh-----CCCCeEEecCCCcchhHHHHHHhhcc----------------CCeEEEEECCH-HHHHHHH
Confidence 45666666555432 33468999999999999988765421 12233333322 111111
Q ss_pred hcCcc-cccceeeecCCccccCC-cCCC----ceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHH
Q 044174 88 TSLPQ-QREYYSAGVPGSFHHRL-FPQS----SIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYA 161 (332)
Q Consensus 88 ~~l~~-~~~~f~~~vpgSFy~~l-fP~~----svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~ 161 (332)
+.+.. ....-+.++-|+|.+.+ +|.. ...++++..++|+++.
T Consensus 106 ~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~-------------------------------- 153 (301)
T TIGR03438 106 AALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP-------------------------------- 153 (301)
T ss_pred HHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH--------------------------------
Confidence 11211 11233445556666532 3332 4567777778888652
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEecccCC
Q 044174 162 SQFAKDMENFLNARAEEIVSGGMMVIIMPGIPY 194 (332)
Q Consensus 162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~ 194 (332)
.|...||+.-++-|+|||+|++.+-...+
T Consensus 154 ----~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 154 ----EEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred ----HHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 23446788888889999999987755443
No 58
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.72 E-value=0.00026 Score=64.36 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=62.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC-
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR- 108 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~- 108 (332)
.-+|+|+|||+|.-|..+++.. .+.-.|+--|+-. .+ .++. +..+-|++.+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~----------------~~~~~V~aVDi~~--~~----~~~~-----v~~i~~D~~~~~ 104 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI----------------GDKGRVIACDILP--MD----PIVG-----VDFLQGDFRDEL 104 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc----------------CCCceEEEEeccc--cc----CCCC-----cEEEecCCCChH
Confidence 4589999999999887765421 1123444444422 11 1111 22344455553
Q ss_pred -------CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174 109 -------LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS 181 (332)
Q Consensus 109 -------lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p 181 (332)
-++++++|+++|+.+.||... |. .| . + .+ .......|+.=.+-|+|
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~--~--~~-~~~~~~~L~~~~~~Lkp 157 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I--P--RA-MYLVELALDMCRDVLAP 157 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H--H--HH-HHHHHHHHHHHHHHcCC
Confidence 257789999999999999332 11 00 0 0 00 01123566666677889
Q ss_pred CCeEEEEecc
Q 044174 182 GGMMVIIMPG 191 (332)
Q Consensus 182 GG~mvl~~~g 191 (332)
||+|++....
T Consensus 158 GG~~vi~~~~ 167 (209)
T PRK11188 158 GGSFVVKVFQ 167 (209)
T ss_pred CCEEEEEEec
Confidence 9999996544
No 59
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.0005 Score=63.60 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHH
Q 044174 7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTL 86 (332)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~l 86 (332)
-+.||.....++..... ....+|..+|||.|...+.+++. .+.+.+.||..|.-.|-=. +
T Consensus 53 dR~wL~~Efpel~~~~~----~~~~~ilEvGCGvGNtvfPll~~---------------~~n~~l~v~acDfsp~Ai~-~ 112 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDE----KSAETILEVGCGVGNTVFPLLKT---------------SPNNRLKVYACDFSPRAIE-L 112 (264)
T ss_pred hhHHHHHhhHHhhCccc----cChhhheeeccCCCcccchhhhc---------------CCCCCeEEEEcCCChHHHH-H
Confidence 45688888877776542 22339999999998777665431 1245588888876554322 2
Q ss_pred HhcCcccc----cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHH
Q 044174 87 FTSLPQQR----EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYAS 162 (332)
Q Consensus 87 f~~l~~~~----~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~ 162 (332)
.+.-.... ..|+.-+-++=-...++.+|+|++..-+. ||-+|+ +-. .
T Consensus 113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~p----------------------ek~----~ 163 (264)
T KOG2361|consen 113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHP----------------------EKM----Q 163 (264)
T ss_pred HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE---EeccCh----------------------HHH----H
Confidence 22222111 22333333332445556667776655222 233332 221 1
Q ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhh-hcccCcCcccCCHH
Q 044174 163 QFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAE-LDSFNLPIYSASSE 241 (332)
Q Consensus 163 q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~-~d~fn~P~y~ps~~ 241 (332)
++.+.+. +-|||||.+++-=-|+.+-. .+.-- ++-.|++.. +..=--+.||-+.+
T Consensus 164 ~a~~nl~-------~llKPGG~llfrDYg~~Dla------------qlRF~-----~~~~i~~nfYVRgDGT~~YfF~~e 219 (264)
T KOG2361|consen 164 SVIKNLR-------TLLKPGGSLLFRDYGRYDLA------------QLRFK-----KGQCISENFYVRGDGTRAYFFTEE 219 (264)
T ss_pred HHHHHHH-------HHhCCCcEEEEeecccchHH------------HHhcc-----CCceeecceEEccCCceeeeccHH
Confidence 2333333 45569999999887876521 11100 122222111 11112478999999
Q ss_pred HHHHHHHhCCceEEeEEEE
Q 044174 242 EMVKLVDKNGHFSIKTVEL 260 (332)
Q Consensus 242 E~~~~ie~~G~F~I~~le~ 260 (332)
|+++++.+.| |..++++.
T Consensus 220 eL~~~f~~ag-f~~~~~~~ 237 (264)
T KOG2361|consen 220 ELDELFTKAG-FEEVQLEV 237 (264)
T ss_pred HHHHHHHhcc-cchhcccc
Confidence 9999999999 88777764
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.64 E-value=0.00045 Score=61.89 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174 6 AVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 6 ~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
...++.++.+-+......+ .+...+|+|+|||+|..++.+..
T Consensus 24 ~~~~~~~~~~~d~l~l~~~--l~~g~~VLDiGcGtG~~al~la~ 65 (187)
T PRK00107 24 DPEELWERHILDSLAIAPY--LPGGERVLDVGSGAGFPGIPLAI 65 (187)
T ss_pred CHHHHHHHHHHHHHHHHhh--cCCCCeEEEEcCCCCHHHHHHHH
Confidence 4455555555433333221 23468999999999998887753
No 61
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.64 E-value=0.0024 Score=61.74 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.1
Q ss_pred cccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 235 IYSASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 235 ~y~ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
.|+.+.+|++.++++.| |+|...+...
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 46779999999999999 9998877553
No 62
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00096 Score=61.77 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=37.3
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
+=+++|||+|.+.-|+|| =|+.+|++.-++-|++.|.+++.
T Consensus 95 ~g~e~SVDlI~~Aqa~HW---------------------------------------Fdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHW---------------------------------------FDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cCCCcceeeehhhhhHHh---------------------------------------hchHHHHHHHHHHcCCCCCEEEE
Confidence 335999999999999999 27778899999999998877666
Q ss_pred ecccC
Q 044174 189 MPGIP 193 (332)
Q Consensus 189 ~~gr~ 193 (332)
..=++
T Consensus 136 W~Y~d 140 (261)
T KOG3010|consen 136 WNYND 140 (261)
T ss_pred EEccC
Confidence 65443
No 63
>PRK04266 fibrillarin; Provisional
Probab=97.60 E-value=0.0012 Score=60.98 Aligned_cols=21 Identities=19% Similarity=0.242 Sum_probs=17.6
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~ 49 (332)
+..+|+|+|||+|..|+.+.+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~ 92 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSD 92 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHH
Confidence 347999999999999887754
No 64
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.58 E-value=0.00047 Score=61.00 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=17.5
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~ 49 (332)
...+|+|+|||+|..++.++.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~ 51 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAAL 51 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHH
Confidence 356899999999999987753
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.58 E-value=0.00045 Score=62.22 Aligned_cols=93 Identities=19% Similarity=0.346 Sum_probs=65.8
Q ss_pred CCceEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc
Q 044174 28 SNIIRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE 95 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~ 95 (332)
+.--++.|+|||.|..|..++ ...|+.-++++.. .|.+++..-|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~--------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG------LPHVEWIQADVPE--------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT---------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCC---------------
Confidence 556889999999999999887 4556666665532 4678877777764
Q ss_pred ceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044174 96 YYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNAR 175 (332)
Q Consensus 96 ~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~R 175 (332)
..|.+++|+++.+-.+++|+.. .|+..++..-
T Consensus 101 -------------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~l~~l 132 (201)
T PF05401_consen 101 -------------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAALDRL 132 (201)
T ss_dssp ----------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHHHHHH
T ss_pred -------------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHHHHHH
Confidence 1388899999999999998751 3566777888
Q ss_pred HHhhccCCeEEEEe
Q 044174 176 AEEIVSGGMMVIIM 189 (332)
Q Consensus 176 a~EL~pGG~mvl~~ 189 (332)
.+-|.|||.||+.-
T Consensus 133 ~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 133 VAALAPGGHLVFGH 146 (201)
T ss_dssp HHTEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEE
Confidence 88999999999964
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.57 E-value=0.00032 Score=65.96 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=42.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR 108 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~ 108 (332)
...+|+|+|||+|..+..+.+.. .. ....+|+-.|+-.+=-...-+..+ + +.-+-++..+-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~~------~~~~~v~giD~s~~~l~~A~~~~~---~--~~~~~~d~~~l 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------PE------ITTMQLFGLDISKVAIKYAAKRYP---Q--VTFCVASSHRL 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------cc------ccCCeEEEECCCHHHHHHHHHhCC---C--CeEEEeecccC
Confidence 34689999999999887765421 00 011355666653221111111111 1 11233455556
Q ss_pred CcCCCceeEEEecCc
Q 044174 109 LFPQSSIHFAHCSYA 123 (332)
Q Consensus 109 lfP~~svd~~~S~~a 123 (332)
.||++++|+++|..+
T Consensus 146 p~~~~sfD~I~~~~~ 160 (272)
T PRK11088 146 PFADQSLDAIIRIYA 160 (272)
T ss_pred CCcCCceeEEEEecC
Confidence 688999999998653
No 67
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00056 Score=63.80 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCCceEEEeecCCCCcchHHHHHH--------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc
Q 044174 27 ASNIIRLADLGCAVGSNTINAMQD--------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ 92 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~ 92 (332)
.+..-+|+|+|||.|.-++.+.+. ..+..++.... + .-...++|+..| ++...+.
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n--~l~~ri~v~~~D-----i~~~~~~--- 110 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-N--PLEERIQVIEAD-----IKEFLKA--- 110 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-C--cchhceeEehhh-----HHHhhhc---
Confidence 455899999999999999999855 22222222211 1 123457766664 4443322
Q ss_pred cccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHH
Q 044174 93 QREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFL 172 (332)
Q Consensus 93 ~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL 172 (332)
.+..++|+|+| .|+- ++-... ..+.+.++-...+..-++..++
T Consensus 111 -----------------~~~~~fD~Ii~---------NPPy---------f~~~~~--~~~~~~~~~Ar~e~~~~le~~i 153 (248)
T COG4123 111 -----------------LVFASFDLIIC---------NPPY---------FKQGSR--LNENPLRAIARHEITLDLEDLI 153 (248)
T ss_pred -----------------ccccccCEEEe---------CCCC---------CCCccc--cCcChhhhhhhhhhcCCHHHHH
Confidence 23448999999 3433 332222 2244555556667778899999
Q ss_pred HHHHHhhccCCeEEEEec
Q 044174 173 NARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 173 ~~Ra~EL~pGG~mvl~~~ 190 (332)
+.=++-||+||++.++..
T Consensus 154 ~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 154 RAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred HHHHHHccCCCEEEEEec
Confidence 999999999999998873
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.54 E-value=0.00037 Score=62.33 Aligned_cols=52 Identities=25% Similarity=0.458 Sum_probs=34.9
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
.++|++++|.+++++..+|-.+.. . |-++. -..||+.=++-|+|||.+++
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k~~h-~----------~~r~~-------------------~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPKKRH-N----------KRRIT-------------------QPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred hhCCCCceeEEEEECCCcCCCCCc-c----------ccccC-------------------CHHHHHHHHHHhCCCCEEEE
Confidence 346778999999999999954311 0 00110 12466666788899999988
Q ss_pred Ee
Q 044174 188 IM 189 (332)
Q Consensus 188 ~~ 189 (332)
..
T Consensus 131 ~t 132 (194)
T TIGR00091 131 KT 132 (194)
T ss_pred Ee
Confidence 76
No 69
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.50 E-value=0.00061 Score=64.83 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEec
Q 044174 166 KDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 166 ~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
...+.+++.=.+-|+|||+++++++
T Consensus 228 ~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 228 DLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4456678777788999999999885
No 70
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.48 E-value=0.00064 Score=51.55 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=55.7
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC-c
Q 044174 32 RLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL-F 110 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l-f 110 (332)
+|+|+|||.|..+..+.. .+...++..|+..+-....-+.........+.-+-+++.+.. .
T Consensus 1 ~ildig~G~G~~~~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (107)
T cd02440 1 RVLDLGCGTGALALALAS------------------GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE 62 (107)
T ss_pred CeEEEcCCccHHHHHHhc------------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc
Confidence 589999999998766643 012345555554332222211110000000111223333333 3
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
+.+++|+++++..+|+.+ .+...+++.-.+-|+|||.+++.
T Consensus 63 ~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 ADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 567899999999988850 12334555555667899999886
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.46 E-value=0.00034 Score=69.26 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=59.5
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHh-cCcccc---cceeeecCCccc
Q 044174 31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFT-SLPQQR---EYYSAGVPGSFH 106 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~-~l~~~~---~~f~~~vpgSFy 106 (332)
-+|+|+|||+|.-++.+.+. .|..+|+..|... .--...+ ++.... ..-+..+.+..+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~-----------------~P~~~V~~vD~S~-~Av~~A~~N~~~n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK-----------------NPQAKVVFVDESP-MAVASSRLNVETNMPEALDRCEFMINNAL 291 (378)
T ss_pred CeEEEEeccccHHHHHHHHh-----------------CCCCEEEEEECCH-HHHHHHHHHHHHcCcccCceEEEEEcccc
Confidence 48999999999987765431 2456666666632 1111111 010000 001222334444
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
.. ++..++|+|+||-.+|+.-.+.. .. ...+++.=.+-|+|||.++
T Consensus 292 ~~-~~~~~fDlIlsNPPfh~~~~~~~----------------------~i-----------a~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 292 SG-VEPFRFNAVLCNPPFHQQHALTD----------------------NV-----------AWEMFHHARRCLKINGELY 337 (378)
T ss_pred cc-CCCCCEEEEEECcCcccCccCCH----------------------HH-----------HHHHHHHHHHhcccCCEEE
Confidence 43 35678999999988887432211 11 1134444456788999999
Q ss_pred EEe
Q 044174 187 IIM 189 (332)
Q Consensus 187 l~~ 189 (332)
++.
T Consensus 338 iV~ 340 (378)
T PRK15001 338 IVA 340 (378)
T ss_pred EEE
Confidence 995
No 72
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.46 E-value=0.00065 Score=59.00 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=62.1
Q ss_pred CccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 044174 103 GSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG 182 (332)
Q Consensus 103 gSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG 182 (332)
|+..+-.++++++|++++++++||+.+ ...+|+.-++-||||
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpG 74 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVD--------------------------------------RLRAMKEMYRVLKPG 74 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCC--------------------------------------HHHHHHHHHHHcCcC
Confidence 444455578899999999999999642 123455556777899
Q ss_pred CeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC----cccCCHHHHHHHHHhCCceEEeEE
Q 044174 183 GMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP----IYSASSEEMVKLVDKNGHFSIKTV 258 (332)
Q Consensus 183 G~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P----~y~ps~~E~~~~ie~~G~F~I~~l 258 (332)
|++++.-.+.++... ....+..... .-+..-|.+... .+.+..- ..+|+.+|+.+++++.| |+..+.
T Consensus 75 G~l~i~d~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~ 145 (160)
T PLN02232 75 SRVSILDFNKSNQSV-----TTFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH 145 (160)
T ss_pred eEEEEEECCCCChHH-----HHHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence 999988766544221 0101100000 000111111111 1112111 35789999999999999 874443
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=97.45 E-value=0.003 Score=57.65 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=81.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL 109 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l 109 (332)
.-+|+|+|||+|..++.+... . .-+|+..|.-.. .-...+........-+..+-+++.. .
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~--~----------------~~~v~~vD~s~~-~l~~a~~n~~~~~~~~~~~~~d~~~-~ 96 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA--G----------------AGSVTAVDISRR-AVRSARLNALLAGVDVDVRRGDWAR-A 96 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc--C----------------CCeEEEEECCHH-HHHHHHHHHHHhCCeeEEEECchhh-h
Confidence 469999999999988776431 0 012333333221 1111111000001112334456655 4
Q ss_pred cCCCceeEEEecCccccccCCccccccC-CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 110 FPQSSIHFAHCSYALHWLSKVPEELLDE-NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 110 fP~~svd~~~S~~alHWLs~~P~~~~~~-~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
+|++++|+++++--.+.-+... ..+. ..-.|+.| .....++..|++.=.+-|+|||++++.
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG----------------PDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC----------------CcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5788999999975333222110 0000 00001111 011234566777777889999999987
Q ss_pred ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCC
Q 044174 189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNG 251 (332)
Q Consensus 189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G 251 (332)
.....+ +.+++..+...|+ .-+.+.+..+|+ -|..-.....+++.|
T Consensus 159 ~~~~~~---------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 159 QSELSG---------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred EecccC---------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 644321 1234444434443 333444455663 333334456677888
No 74
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.44 E-value=0.00086 Score=54.20 Aligned_cols=20 Identities=40% Similarity=0.348 Sum_probs=17.1
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~ 49 (332)
..+|+|+|||+|..+..+++
T Consensus 20 ~~~vldlG~G~G~~~~~l~~ 39 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAAR 39 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 45999999999999988754
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.42 E-value=0.00053 Score=62.89 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=64.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR 108 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~ 108 (332)
...+|+|+|||+|..++.++... |..+++..|.-..=....=+.+....---+.-+.+++..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-----------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~- 148 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-----------------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE- 148 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-
Confidence 34689999999999888775421 123444444321111111111110000012234455554
Q ss_pred CcCCCceeEEEecCccccccCC---ccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKV---PEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~---P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
.+|++++|+++|+--.+..+.. +..+...+ +.... .-......++..|++.=.+.|+|||.+
T Consensus 149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e--------------~~~~~-~~~~~~~~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHE--------------PRLAL-FGGEDGLDFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred cCcCCceeEEEECCCCCchhhhhhcChhhhhcC--------------CHHHH-cCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence 4578899999997554432221 11110000 00000 001223456677888888899999999
Q ss_pred EEEe
Q 044174 186 VIIM 189 (332)
Q Consensus 186 vl~~ 189 (332)
++..
T Consensus 214 ~~~~ 217 (251)
T TIGR03534 214 LLEI 217 (251)
T ss_pred EEEE
Confidence 9875
No 76
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.41 E-value=0.0049 Score=56.47 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=18.3
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~ 49 (332)
+.-+|+|.|||.|.|++.+++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~ 57 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE 57 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh
Confidence 346999999999999999874
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.40 E-value=0.001 Score=59.99 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~ 49 (332)
..+|+|+|||+|..|..+.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred CCEEEEECcCccHHHHHHHH
Confidence 46899999999999977654
No 78
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.40 E-value=0.00097 Score=60.20 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=17.1
Q ss_pred CCceEEEeecCCCCcchHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~ 48 (332)
....+|+|+|||+|..|..+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la 97 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLA 97 (212)
T ss_pred CCCCEEEEECCCccHHHHHHH
Confidence 445799999999999987543
No 79
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.38 E-value=0.00053 Score=67.03 Aligned_cols=106 Identities=11% Similarity=0.199 Sum_probs=60.4
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCc
Q 044174 31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLF 110 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lf 110 (332)
-+|+|+|||+|..++.+... .|..+|...|.-..=-...=.++.... +-...+.++.+..
T Consensus 198 g~VLDlGCG~G~ls~~la~~-----------------~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~-- 257 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH-----------------SPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSD-- 257 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh-----------------CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccc--
Confidence 47999999999987665431 134456666653210000000111100 0011123344442
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
.++++|+++|+-.+||.-.. ...+...|++.=++-|+|||.|+++.
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cCCCccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 35789999999999983210 01345567777778899999999875
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.37 E-value=0.0013 Score=59.70 Aligned_cols=36 Identities=11% Similarity=0.258 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
.|.+...+.+.+.. .+..+|+|+|||+|..|..+..
T Consensus 61 ~p~~~~~~~~~l~~------~~g~~VLdIG~GsG~~t~~la~ 96 (212)
T PRK13942 61 AIHMVAIMCELLDL------KEGMKVLEIGTGSGYHAAVVAE 96 (212)
T ss_pred cHHHHHHHHHHcCC------CCcCEEEEECCcccHHHHHHHH
Confidence 34454444444432 3357999999999999977654
No 81
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.34 E-value=0.0013 Score=57.75 Aligned_cols=123 Identities=13% Similarity=0.055 Sum_probs=61.8
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCc
Q 044174 31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLF 110 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lf 110 (332)
-+|+|+|||+|..++.+.... + +|+-.|+-. ++-...+.......+-+..+-++.+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-----------------~--~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~~d~~~~-- 78 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-----------------K--CILTTDINP-FAVKELRENAKLNNVGLDVVMTDLFKG-- 78 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-----------------C--EEEEEECCH-HHHHHHHHHHHHcCCceEEEEcccccc--
Confidence 579999999999887765320 1 333333311 111111110000011122344555543
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
+.+++|+++|+..+|.....+.. .+....++..| ..-...+..||+.=.+-|+|||++++...
T Consensus 79 ~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 79 VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG----------------KDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cCCcccEEEECCCCCCCcchhcc-cchhhhhhhcC----------------CchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 24589999999888865432211 00000000000 00012245577777778899999999875
Q ss_pred cc
Q 044174 191 GI 192 (332)
Q Consensus 191 gr 192 (332)
+.
T Consensus 142 ~~ 143 (179)
T TIGR00537 142 SL 143 (179)
T ss_pred cc
Confidence 43
No 82
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.34 E-value=0.0014 Score=60.20 Aligned_cols=103 Identities=23% Similarity=0.313 Sum_probs=73.0
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH 107 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~ 107 (332)
++.-+|+|+|+|+|..++.++. . .|.+++..-|||.. ....+. .-.+.-+||+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~--------~---------~P~l~~~v~Dlp~v--~~~~~~-----~~rv~~~~gd~f- 153 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALAR--------A---------YPNLRATVFDLPEV--IEQAKE-----ADRVEFVPGDFF- 153 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHH--------H---------STTSEEEEEE-HHH--HCCHHH-----TTTEEEEES-TT-
T ss_pred cCccEEEeccCcchHHHHHHHH--------H---------CCCCcceeeccHhh--hhcccc-----ccccccccccHH-
Confidence 3446899999999998876633 2 46788999999873 111111 345667999999
Q ss_pred CCcCCCceeEEEecCccc-cccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC--Ce
Q 044174 108 RLFPQSSIHFAHCSYALH-WLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG--GM 184 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alH-WLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG--G~ 184 (332)
.-+|. .|+++-...|| | +. .+-..+|+.-++.|+|| |+
T Consensus 154 ~~~P~--~D~~~l~~vLh~~-~d------------------------------------~~~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 154 DPLPV--ADVYLLRHVLHDW-SD------------------------------------EDCVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp TCCSS--ESEEEEESSGGGS--H------------------------------------HHHHHHHHHHHHHSEECTTEE
T ss_pred hhhcc--ccceeeehhhhhc-ch------------------------------------HHHHHHHHHHHHHhCCCCCCe
Confidence 88999 99999999998 6 21 24446888889999999 99
Q ss_pred EEEEecccCC
Q 044174 185 MVIIMPGIPY 194 (332)
Q Consensus 185 mvl~~~gr~~ 194 (332)
+++.=.-.++
T Consensus 195 llI~e~~~~~ 204 (241)
T PF00891_consen 195 LLIIEMVLPD 204 (241)
T ss_dssp EEEEEEEECS
T ss_pred EEEEeeccCC
Confidence 9988655444
No 83
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.32 E-value=0.0011 Score=57.98 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=57.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCccccC
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFHHR 108 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy~~ 108 (332)
.-+|+|+|||+|.-++.+... .|...|...|.-.+=-...=+++.... .- +..+.++.+..
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~-----------------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~ 93 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKR-----------------GPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA 93 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHT-----------------STCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT
T ss_pred CCeEEEecCChHHHHHHHHHh-----------------CCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc
Confidence 467999999999999887531 123334444433222221111111111 10 33334444443
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
+ ++.++|+++||--+|+-. +....-+..|++.=.+-|+|||.+++.
T Consensus 94 ~-~~~~fD~Iv~NPP~~~~~---------------------------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 94 L-PDGKFDLIVSNPPFHAGG---------------------------------DDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp C-CTTCEEEEEE---SBTTS---------------------------------HCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-cccceeEEEEccchhccc---------------------------------ccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 3 478999999954433311 001122345566556788899999987
Q ss_pred ec
Q 044174 189 MP 190 (332)
Q Consensus 189 ~~ 190 (332)
..
T Consensus 140 ~~ 141 (170)
T PF05175_consen 140 IN 141 (170)
T ss_dssp EE
T ss_pred ee
Confidence 63
No 84
>PHA03411 putative methyltransferase; Provisional
Probab=97.30 E-value=0.002 Score=61.02 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=64.5
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCc
Q 044174 31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLF 110 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lf 110 (332)
-+|+|+|||+|..++.+... .+..+|+..|+-. ++-.+.+.... . +..+-+++..- .
T Consensus 66 grVLDLGcGsGilsl~la~r-----------------~~~~~V~gVDisp-~al~~Ar~n~~--~--v~~v~~D~~e~-~ 122 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHR-----------------CKPEKIVCVELNP-EFARIGKRLLP--E--AEWITSDVFEF-E 122 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHh-----------------CCCCEEEEEECCH-HHHHHHHHhCc--C--CEEEECchhhh-c
Confidence 58999999999877665331 0123455555532 33333333211 1 12234455432 2
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHH--HHHHHHHHHHHhhccCCeEEEE
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAK--DMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~--d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
+..++|+++|+-.++++..... .+ ...|.-|. ...+ .+..||+..+.=|+|+|...+.
T Consensus 123 ~~~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~----------------~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 123 SNEKFDVVISNPPFGKINTTDT--KD--VFEYTGGE----------------FEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCCCcEEEEcCCccccCchhh--hh--hhhhccCc----------------cccccccHHHHHhhhHheecCCceEEEE
Confidence 4568999999999998643211 10 01111110 0001 1467888888888899977777
Q ss_pred ecc
Q 044174 189 MPG 191 (332)
Q Consensus 189 ~~g 191 (332)
+-|
T Consensus 183 yss 185 (279)
T PHA03411 183 YSG 185 (279)
T ss_pred Eec
Confidence 544
No 85
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.26 E-value=0.0076 Score=55.01 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHH
Q 044174 169 ENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVD 248 (332)
Q Consensus 169 ~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie 248 (332)
..+++.-.+-|+|||++++.....+... ..-|-|.-+.+|+++.+.
T Consensus 132 ~~~~~~l~~lLkpgG~~ll~~~~~~~~~----------------------------------~~gpp~~~~~~eL~~~f~ 177 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLLITLDYDQSE----------------------------------MAGPPFSVSPAEVEALYG 177 (213)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEcCCCC----------------------------------CCCcCCCCCHHHHHHHhc
Confidence 3466677788999998777665432211 011447788999999886
Q ss_pred hCCceEEeEEEEeC
Q 044174 249 KNGHFSIKTVELTN 262 (332)
Q Consensus 249 ~~G~F~I~~le~~~ 262 (332)
.+ |.|+.++...
T Consensus 178 -~~-~~i~~~~~~~ 189 (213)
T TIGR03840 178 -GH-YEIELLESRD 189 (213)
T ss_pred -CC-ceEEEEeecc
Confidence 34 8888877544
No 86
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.19 E-value=0.0026 Score=57.11 Aligned_cols=93 Identities=18% Similarity=0.361 Sum_probs=62.5
Q ss_pred cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174 110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
||++|+|.|+-+-+|+=+.+ |..+ |+ +-|+-|.+.+++|
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~-P~~v-------------------------------------L~---EmlRVgr~~IVsF 109 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRR-PDEV-------------------------------------LE---EMLRVGRRAIVSF 109 (193)
T ss_pred CCCCCccEEehHhHHHhHhH-HHHH-------------------------------------HH---HHHHhcCeEEEEe
Confidence 79999999999888876544 4332 22 3356899999999
Q ss_pred cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCccc------CCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS------ASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~------ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
+.- +. |. .-..+.-.|..+..+ .+..+||. -|..+++++.++.| ++|++-..+.
T Consensus 110 PNF-----------g~-W~----~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 110 PNF-----------GH-WR----NRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD 169 (193)
T ss_pred cCh-----------HH-HH----HHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence 652 21 21 112233346666443 34455664 58999999999999 8998877765
No 87
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.18 E-value=0.0026 Score=61.25 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhccCCeEEEEec
Q 044174 167 DMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 167 d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
..+.+++.-.+-|+|||+++++++
T Consensus 241 ~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 241 LVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 344577777777899999999864
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.16 E-value=0.003 Score=57.29 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
.|.+.+.+.+.+.. ....+|+|+|||+|..|+.+..
T Consensus 62 ~p~~~~~~~~~l~~------~~~~~VLDiG~GsG~~a~~la~ 97 (215)
T TIGR00080 62 APHMVAMMTELLEL------KPGMKVLEIGTGSGYQAAVLAE 97 (215)
T ss_pred hHHHHHHHHHHhCC------CCcCEEEEECCCccHHHHHHHH
Confidence 34444445444432 3457999999999999987654
No 89
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.15 E-value=0.00051 Score=62.43 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=47.5
Q ss_pred CCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC-CchHHHHhcCcccccceeeecCCcc
Q 044174 27 ASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS-NDFNTLFTSLPQQREYYSAGVPGSF 105 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~-NDFn~lf~~l~~~~~~f~~~vpgSF 105 (332)
.++..+|||+|||++.-+ .++.. .+.|+-=||-. ||+-+ .|=++.||
T Consensus 70 ~~~~~viaD~GCGdA~la--------~~~~~------------~~~V~SfDLva~n~~Vt---------acdia~vP--- 117 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA--------KAVPN------------KHKVHSFDLVAPNPRVT---------ACDIANVP--- 117 (219)
T ss_dssp S-TTS-EEEES-TT-HHH--------HH--S---------------EEEEESS-SSTTEE---------ES-TTS-S---
T ss_pred cCCCEEEEECCCchHHHH--------Hhccc------------CceEEEeeccCCCCCEE---------EecCccCc---
Confidence 466799999999998766 11211 23344444433 33221 12223344
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
++++|+|++..+-||.= .||..||+-=.+-|||||.|
T Consensus 118 ----L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L 154 (219)
T PF05148_consen 118 ----LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGIL 154 (219)
T ss_dssp ------TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEE
T ss_pred ----CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEE
Confidence 69999999988655431 37888999888999999999
Q ss_pred EEEec
Q 044174 186 VIIMP 190 (332)
Q Consensus 186 vl~~~ 190 (332)
.+.-.
T Consensus 155 ~IAEV 159 (219)
T PF05148_consen 155 KIAEV 159 (219)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88753
No 90
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.14 E-value=0.0021 Score=62.62 Aligned_cols=106 Identities=18% Similarity=0.306 Sum_probs=62.6
Q ss_pred CceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCC--CCCC----ceEEEecCCCCCchHHHHhc
Q 044174 29 NIIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPS--SKLP----EFQVFFNDKTSNDFNTLFTS 89 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~--~~~~----~~~v~~nDlp~NDFn~lf~~ 89 (332)
...+|+|||||-|+-..-.. ...|+..+++|.+.... ...+ ...++..|..... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~----l~- 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES----LR- 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH----HH-
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch----hh-
Confidence 67999999999999876654 44555566666331100 0011 2222333332211 11
Q ss_pred CcccccceeeecCCccccCCcC--CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHH
Q 044174 90 LPQQREYYSAGVPGSFHHRLFP--QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKD 167 (332)
Q Consensus 90 l~~~~~~f~~~vpgSFy~~lfP--~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d 167 (332)
..++ ...+|+|=+-.|||..=.. +.-
T Consensus 137 ------------------~~~~~~~~~FDvVScQFalHY~Fes----------------------------------e~~ 164 (331)
T PF03291_consen 137 ------------------EKLPPRSRKFDVVSCQFALHYAFES----------------------------------EEK 164 (331)
T ss_dssp ------------------CTSSSTTS-EEEEEEES-GGGGGSS----------------------------------HHH
T ss_pred ------------------hhccccCCCcceeehHHHHHHhcCC----------------------------------HHH
Confidence 1222 3599999999999983321 233
Q ss_pred HHHHHHHHHHhhccCCeEEEEecc
Q 044174 168 MENFLNARAEEIVSGGMMVIIMPG 191 (332)
Q Consensus 168 ~~~fL~~Ra~EL~pGG~mvl~~~g 191 (332)
.++||+.-++-|+|||.|+.+++-
T Consensus 165 ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 165 ARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHhcCCCCEEEEEecC
Confidence 467999999999999999999974
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.13 E-value=0.0013 Score=65.37 Aligned_cols=100 Identities=18% Similarity=0.309 Sum_probs=60.5
Q ss_pred CceEEEeecCCCCcchHHHHHH--------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc
Q 044174 29 NIIRLADLGCAVGSNTINAMQD--------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR 94 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~ 94 (332)
....++|+|||+|..++.++.. .+..+.++....+ ...+.++..|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA---------------- 181 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDA---------------- 181 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCH----------------
Confidence 3468999999999999888743 2233322222211 12233333332
Q ss_pred cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 044174 95 EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA 174 (332)
Q Consensus 95 ~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~ 174 (332)
...-..+|++++|.+++++...|..+.. .++ -...||+.
T Consensus 182 ---------~~ll~~~~~~s~D~I~lnFPdPW~KkrH-------------RRl-------------------v~~~fL~e 220 (390)
T PRK14121 182 ---------RLLLELLPSNSVEKIFVHFPVPWDKKPH-------------RRV-------------------ISEDFLNE 220 (390)
T ss_pred ---------HHhhhhCCCCceeEEEEeCCCCccccch-------------hhc-------------------cHHHHHHH
Confidence 1112357899999999998888833211 011 02356777
Q ss_pred HHHhhccCCeEEEEe
Q 044174 175 RAEEIVSGGMMVIIM 189 (332)
Q Consensus 175 Ra~EL~pGG~mvl~~ 189 (332)
=++-|+|||.+.+..
T Consensus 221 ~~RvLkpGG~l~l~T 235 (390)
T PRK14121 221 ALRVLKPGGTLELRT 235 (390)
T ss_pred HHHHcCCCcEEEEEE
Confidence 778888999998876
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.12 E-value=0.0029 Score=59.98 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174 165 AKDMENFLNARAEEIVSGGMMVIIMPG 191 (332)
Q Consensus 165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~g 191 (332)
..+.+.+++.-.+-|+|||.++++++-
T Consensus 220 l~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 220 LNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 345667777777788999999999853
No 93
>PTZ00146 fibrillarin; Provisional
Probab=97.11 E-value=0.0095 Score=56.98 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ 50 (332)
++.|-.||-.=++... ..+..+|+|+|||+|..|..+.+.
T Consensus 114 rSKlaa~i~~g~~~l~---IkpG~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 114 RSKLAAAIIGGVANIP---IKPGSKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred ccHHHHHHHCCcceec---cCCCCEEEEeCCcCCHHHHHHHHH
Confidence 3456666633222221 233469999999999988776553
No 94
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.06 E-value=0.0058 Score=56.12 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=46.2
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
-+-.|+++++|-++|-.|++||=..-+... .=++-+..|+..=+..|++|++-
T Consensus 104 ~GlpfrpGtFDg~ISISAvQWLcnA~~s~~---------------------------~P~~Rl~~FF~tLy~~l~rg~ra 156 (270)
T KOG1541|consen 104 EGLPFRPGTFDGVISISAVQWLCNADKSLH---------------------------VPKKRLLRFFGTLYSCLKRGARA 156 (270)
T ss_pred CCCCCCCCccceEEEeeeeeeecccCcccc---------------------------ChHHHHHHHhhhhhhhhccCcee
Confidence 466799999999999999999866443321 11356777888888999999999
Q ss_pred EEEecc
Q 044174 186 VIIMPG 191 (332)
Q Consensus 186 vl~~~g 191 (332)
|+.+-=
T Consensus 157 V~QfYp 162 (270)
T KOG1541|consen 157 VLQFYP 162 (270)
T ss_pred EEEecc
Confidence 999954
No 95
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.05 E-value=0.0045 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhccCCeEEEEe
Q 044174 167 DMENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 167 d~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
+...+|+.=.+-|+|||++++..
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEE
Confidence 45667888888899999999975
No 96
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.90 E-value=0.0033 Score=56.94 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=44.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFH 106 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy 106 (332)
+..-+|+|+|||+|..+..+.+.. +..+++--|.-. +.-...+. ++. +..+.|+..
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~-----------------~~~~v~giDiS~-~~l~~A~~~~~~-----~~~~~~d~~ 98 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLL-----------------PFKHIYGVEINE-YAVEKAKAYLPN-----INIIQGSLF 98 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhC-----------------CCCeEEEEECCH-HHHHHHHhhCCC-----CcEEEeecc
Confidence 445689999999998887764321 112233333221 11112211 111 112245555
Q ss_pred cCCcCCCceeEEEecCcccccc
Q 044174 107 HRLFPQSSIHFAHCSYALHWLS 128 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs 128 (332)
. .+|++++|+|+|+.+||+++
T Consensus 99 ~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 99 D-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred C-CCCCCCEEEEEECChhhhCC
Confidence 5 68999999999999998763
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.87 E-value=0.0047 Score=57.58 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEe
Q 044174 165 AKDMENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 165 ~~d~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
..++..|++.=.+-|+|||.++++.
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3456667777778888999999976
No 98
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.83 E-value=0.02 Score=51.20 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCceEEEeecCCCCcchHHHH--------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCC
Q 044174 28 SNIIRLADLGCAVGSNTINAM--------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKT 79 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp 79 (332)
.+.-++.|+|||+|.-|+..+ ...++.+++.+.+-+ -+.++|.--|-|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap 94 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAP 94 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccch
Confidence 334699999999999999987 335666666655432 234554444444
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.83 E-value=0.011 Score=47.57 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhccCCeEEEEec
Q 044174 167 DMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 167 d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
+...|++.=.+-|+|||.+++..+
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 556788888899999999999864
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=96.78 E-value=0.037 Score=48.15 Aligned_cols=23 Identities=17% Similarity=0.540 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhccCCeEEEEec
Q 044174 168 MENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 168 ~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
...|++.-.+-|+|||.+++...
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEc
Confidence 45677777788999999988763
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.77 E-value=0.011 Score=56.36 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCcchHHH
Q 044174 30 IIRLADLGCAVGSNTINA 47 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~ 47 (332)
.-+|+|+|||+|..++.+
T Consensus 160 g~~VLDvGcGsG~lai~a 177 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAA 177 (288)
T ss_pred CCEEEEeCCChhHHHHHH
Confidence 479999999999877654
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.76 E-value=0.004 Score=64.00 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=64.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc-cc-cceeeecCCcccc
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ-QR-EYYSAGVPGSFHH 107 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~-~~-~~f~~~vpgSFy~ 107 (332)
..+|+|+|||+|..++.++.. .|..+|+..|.-. +...+.+.-.. .. .-.+..+-|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~-----------------~p~~~v~avDis~-~al~~A~~N~~~~~l~~~v~~~~~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCE-----------------LPNANVIATDISL-DAIEVAKSNAIKYEVTDRIQIIHSNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHH-----------------CCCCeEEEEECCH-HHHHHHHHHHHHcCCccceeeeecchhh
Confidence 468999999999999876542 1234555556521 22222221110 00 0123334455554
Q ss_pred CCcCCCceeEEEecCccccccCCccc---cccC-CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEE---LLDE-NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG 183 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~---~~~~-~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG 183 (332)
. +|.+++|+++|+--....+..+.. +.+. ...++-.| +.....++.+++.-.+-|+|||
T Consensus 201 ~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg----------------~dGl~~~~~il~~a~~~L~~gG 263 (506)
T PRK01544 201 N-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAE----------------EDGLQAYFIIAENAKQFLKPNG 263 (506)
T ss_pred h-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCC----------------ccHHHHHHHHHHHHHHhccCCC
Confidence 3 366789999996433332222111 0000 00000000 1233455667777777889999
Q ss_pred eEEEEec
Q 044174 184 MMVIIMP 190 (332)
Q Consensus 184 ~mvl~~~ 190 (332)
.++++++
T Consensus 264 ~l~lEig 270 (506)
T PRK01544 264 KIILEIG 270 (506)
T ss_pred EEEEEEC
Confidence 9999863
No 103
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.73 E-value=0.029 Score=50.97 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF 87 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf 87 (332)
|.-|-+.+++.+.. ... +|+++|||+|--+..+.+. -|.++.-=+|...+-+.++-
T Consensus 11 k~pIl~vL~~~l~~------~~~-~vLEiaSGtGqHa~~FA~~-----------------lP~l~WqPSD~~~~~~~sI~ 66 (204)
T PF06080_consen 11 KDPILEVLKQYLPD------SGT-RVLEIASGTGQHAVYFAQA-----------------LPHLTWQPSDPDDNLRPSIR 66 (204)
T ss_pred HhHHHHHHHHHhCc------cCc-eEEEEcCCccHHHHHHHHH-----------------CCCCEEcCCCCChHHHhhHH
Confidence 34444556555432 212 7999999999888776432 24566666777777776665
Q ss_pred hcCccc-----ccceeeecCCccccC----CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHH
Q 044174 88 TSLPQQ-----REYYSAGVPGSFHHR----LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVN 158 (332)
Q Consensus 88 ~~l~~~-----~~~f~~~vpgSFy~~----lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ 158 (332)
.-+... .+-...-|...--.- .++.+++|.++|.+.+|-.+- . ..
T Consensus 67 a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~---~----------------------~~- 120 (204)
T PF06080_consen 67 AWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPW---S----------------------AV- 120 (204)
T ss_pred HHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCH---H----------------------HH-
Confidence 433211 111111111110000 126779999999999997443 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccC
Q 044174 159 AYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSA 238 (332)
Q Consensus 159 ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~p 238 (332)
..+++.=++-|++||.|++.-+=..++..+++ ++ ..+...|++. +--|=.+
T Consensus 121 ----------~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN--~~FD~sLr~r--------------dp~~GiR 171 (204)
T PF06080_consen 121 ----------EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SN--AAFDASLRSR--------------DPEWGIR 171 (204)
T ss_pred ----------HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HH--HHHHHHHhcC--------------CCCcCcc
Confidence 23556667899999999998765555544433 11 2445555522 3347889
Q ss_pred CHHHHHHHHHhCCceEEeEEE
Q 044174 239 SSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 239 s~~E~~~~ie~~G~F~I~~le 259 (332)
..+++.++-+++| ++.+...
T Consensus 172 D~e~v~~lA~~~G-L~l~~~~ 191 (204)
T PF06080_consen 172 DIEDVEALAAAHG-LELEEDI 191 (204)
T ss_pred CHHHHHHHHHHCC-CccCccc
Confidence 9999999999999 6654443
No 104
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.67 E-value=0.0023 Score=59.94 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEec
Q 044174 166 KDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 166 ~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
.||..|++--.+-|++||.+.+.-.
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEEeh
Confidence 3788899999999999999988754
No 105
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.64 E-value=0.03 Score=53.03 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=72.0
Q ss_pred ceEEEeecCCCCcchHHHHH--------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc
Q 044174 30 IIRLADLGCAVGSNTINAMQ--------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE 95 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~ 95 (332)
.-.|+|+|||+|.-|+.++. ..|.-..+.++... -.--|.|.++|+-+-=|+..-
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~-------- 217 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHP-------- 217 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccc--------
Confidence 34899999999999999873 34444444444332 133688999888776555511
Q ss_pred ceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHH--------HHHHHH
Q 044174 96 YYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYA--------SQFAKD 167 (332)
Q Consensus 96 ~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~--------~q~~~d 167 (332)
.+.+.+|+..| .|+-+.+.+-+. ..++|.. |. .....-
T Consensus 218 --------------l~~~~~dllvs---------NPPYI~~dD~~~----------l~~eV~~-yEp~lALdGg~eG~~~ 263 (328)
T KOG2904|consen 218 --------------LLEGKIDLLVS---------NPPYIRKDDNRQ----------LKPEVRL-YEPKLALDGGLEGYDN 263 (328)
T ss_pred --------------cccCceeEEec---------CCCcccccchhh----------cCchhee-cCchhhhccccchhHH
Confidence 46677888888 344443221110 0111110 00 011123
Q ss_pred HHHHHHHHHHhhccCCeEEEEecccCC
Q 044174 168 MENFLNARAEEIVSGGMMVIIMPGIPY 194 (332)
Q Consensus 168 ~~~fL~~Ra~EL~pGG~mvl~~~gr~~ 194 (332)
+..|+..-.+-|+|||.++++..++..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEeccccc
Confidence 445666667789999999999998854
No 106
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.63 E-value=0.0019 Score=65.39 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=20.1
Q ss_pred ccCCcCCCceeEEEecCccc-cccC
Q 044174 106 HHRLFPQSSIHFAHCSYALH-WLSK 129 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alH-WLs~ 129 (332)
.+..||++++|++||+-|+. |.+.
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred ccccCCccchhhhhcccccccchhc
Confidence 46679999999999999986 7554
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.48 E-value=0.013 Score=58.85 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.3
Q ss_pred eEEEeecCCCCcchHHHHH
Q 044174 31 IRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~ 49 (332)
.+|+|+|||+|..++.+..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~ 271 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVAL 271 (423)
T ss_pred CEEEEEeChhhHHHHHHHH
Confidence 4899999999999987753
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.30 E-value=0.052 Score=48.33 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=17.0
Q ss_pred CceEEEeecCCCCcchHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~ 48 (332)
..-+|+|+|||+|..++.+.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la 59 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAG 59 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHH
Confidence 34689999999999988774
No 109
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.25 E-value=0.11 Score=46.32 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.3
Q ss_pred CCceEEEeecCCCCcchHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~ 48 (332)
...-+|+|+|||+|.-++.+.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHH
Confidence 445799999999999888764
No 110
>PRK00811 spermidine synthase; Provisional
Probab=96.22 E-value=0.041 Score=52.31 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.3
Q ss_pred CCCceEEEeecCCCCcchHHHH
Q 044174 27 ASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
.+++-+|+|+|||+|..+..++
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l 95 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVL 95 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHH
Confidence 3556799999999999987775
No 111
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.22 E-value=0.025 Score=52.59 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.1
Q ss_pred CceEEEeecCCCCcchHHH
Q 044174 29 NIIRLADLGCAVGSNTINA 47 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~ 47 (332)
..-+|+|+|||+|..++.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~ 137 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAA 137 (250)
T ss_pred CCCEEEEeCCcHHHHHHHH
Confidence 3579999999999776544
No 112
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.18 E-value=0.04 Score=50.25 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=62.0
Q ss_pred cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 044174 95 EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA 174 (332)
Q Consensus 95 ~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~ 174 (332)
.+|+.|-+.+.-+ +|+.|+|.|.+..+|.=-.+ ..+. |+.
T Consensus 128 ~~fvva~ge~l~~--l~d~s~DtVV~TlvLCSve~-------------------------------~~k~-------L~e 167 (252)
T KOG4300|consen 128 ERFVVADGENLPQ--LADGSYDTVVCTLVLCSVED-------------------------------PVKQ-------LNE 167 (252)
T ss_pred EEEEeechhcCcc--cccCCeeeEEEEEEEeccCC-------------------------------HHHH-------HHH
Confidence 4688888776654 39999999998655432111 1222 333
Q ss_pred HHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceE
Q 044174 175 RAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFS 254 (332)
Q Consensus 175 Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~ 254 (332)
-.+-|+|||++++.--|++.-+. ...+++...+-+-.+...| +.=--|.-+.||+.. |+
T Consensus 168 ~~rlLRpgG~iifiEHva~~y~~-----~n~i~q~v~ep~~~~~~dG---------------C~ltrd~~e~Leda~-f~ 226 (252)
T KOG4300|consen 168 VRRLLRPGGRIIFIEHVAGEYGF-----WNRILQQVAEPLWHLESDG---------------CVLTRDTGELLEDAE-FS 226 (252)
T ss_pred HHHhcCCCcEEEEEecccccchH-----HHHHHHHHhchhhheeccc---------------eEEehhHHHHhhhcc-cc
Confidence 33455699999999888765221 1222322222222222222 222344556777777 88
Q ss_pred EeEEEEeC-CCC
Q 044174 255 IKTVELTN-PTS 265 (332)
Q Consensus 255 I~~le~~~-p~~ 265 (332)
+.+.+.+. |+.
T Consensus 227 ~~~~kr~~~~tt 238 (252)
T KOG4300|consen 227 IDSCKRFNFGTT 238 (252)
T ss_pred cchhhcccCCce
Confidence 88888776 443
No 113
>PLN03075 nicotianamine synthase; Provisional
Probab=96.17 E-value=0.028 Score=53.94 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=16.2
Q ss_pred CceEEEeecCCCCcchHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~ 48 (332)
.+-+|+|+|||.|+-|...+
T Consensus 123 ~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH
Confidence 56899999999998766554
No 114
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.032 Score=50.80 Aligned_cols=49 Identities=31% Similarity=0.432 Sum_probs=36.3
Q ss_pred eeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 115 IHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 115 vd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
+++.+---+..|=+..|-. +|+++.+.+++-+++.+ -|++||+||+-.+
T Consensus 122 V~v~~gDG~~G~~~~aPyD------------~I~Vtaaa~~vP~~Ll~---------------QL~~gGrlv~PvG 170 (209)
T COG2518 122 VTVRHGDGSKGWPEEAPYD------------RIIVTAAAPEVPEALLD---------------QLKPGGRLVIPVG 170 (209)
T ss_pred eEEEECCcccCCCCCCCcC------------EEEEeeccCCCCHHHHH---------------hcccCCEEEEEEc
Confidence 7777777777775555532 58888777777777665 4789999999987
No 115
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.16 E-value=0.027 Score=51.38 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174 7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
..|.+...+-+.+.+ ....+|+|+|||+|.+|..+.
T Consensus 56 s~P~~~a~~l~~L~l------~pg~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 56 SAPSMVARMLEALDL------KPGDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp --HHHHHHHHHHTTC-------TT-EEEEES-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHhc------CCCCEEEEecCCCcHHHHHHH
Confidence 456666666666653 335899999999999998875
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.11 E-value=0.077 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhccCCeEEEEeccc
Q 044174 169 ENFLNARAEEIVSGGMMVIIMPGI 192 (332)
Q Consensus 169 ~~fL~~Ra~EL~pGG~mvl~~~gr 192 (332)
..+|+.=++-|+|||++++.++..
T Consensus 274 ~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 274 ERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHHHHHHHHHccCCcEEEEEEcCC
Confidence 456666667889999999998754
No 117
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.04 E-value=0.081 Score=53.34 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=39.2
Q ss_pred CCceeEEEe---cCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 112 QSSIHFAHC---SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 112 ~~svd~~~S---~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
++++|.|++ ++.+..+.+.|+.... .+++ -..+..+.-...|..=++-|+|||+||..
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKE----DFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHh---------------CCHH----HHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 457888886 2445556665544321 0111 12344455567888888899999999988
Q ss_pred ecccC
Q 044174 189 MPGIP 193 (332)
Q Consensus 189 ~~gr~ 193 (332)
.....
T Consensus 366 TCs~~ 370 (431)
T PRK14903 366 TCTVT 370 (431)
T ss_pred ECCCC
Confidence 76643
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.73 E-value=0.069 Score=49.87 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.2
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~ 49 (332)
..+|+|+|||+|.-++.+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred CCEEEEecCchHHHHHHHHH
Confidence 46899999999999988754
No 119
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.73 E-value=0.13 Score=51.74 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 165 AKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
......+|..=++-|+|||+||....
T Consensus 348 ~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 348 AALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 34556778777788999999997764
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.71 E-value=0.13 Score=51.65 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=64.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCccccC
Q 044174 30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFHHR 108 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy~~ 108 (332)
..+|+|+|||+|.-|+.+++.+- .-.|+-.|.-.+=-..+-+++.... .+-+..+.|.-...
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~-----------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP-----------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC-----------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 46999999999999987754310 1233444442222222222221111 11122222322221
Q ss_pred C--cCCCceeEEEec---CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174 109 L--FPQSSIHFAHCS---YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG 183 (332)
Q Consensus 109 l--fP~~svd~~~S~---~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG 183 (332)
. .+.+++|.+++- +++.-+.+.|+... ..++..+ .+..+.-..+|+.=++-|+|||
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~--------------~~~~~~~-----~~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKW--------------LRKPRDI-----AELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhh--------------cCCHHHH-----HHHHHHHHHHHHHHHHhcCCCc
Confidence 1 256789999862 34444445554321 1111222 2233344567777777899999
Q ss_pred eEEEEeccc
Q 044174 184 MMVIIMPGI 192 (332)
Q Consensus 184 ~mvl~~~gr 192 (332)
+||.....-
T Consensus 363 ~lvystcs~ 371 (426)
T TIGR00563 363 TLVYATCSV 371 (426)
T ss_pred EEEEEeCCC
Confidence 999887654
No 121
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.09 Score=50.52 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
..+.-+++.+.. .+..+++|+|||||--|+...
T Consensus 149 T~lcL~~Le~~~--------~~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 149 TSLCLEALEKLL--------KKGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred HHHHHHHHHHhh--------cCCCEEEEecCChhHHHHHHH
Confidence 345555555433 356899999999999998876
No 122
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.67 E-value=0.027 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.1
Q ss_pred HHHHHHHHhhccCCeEEEEeccc
Q 044174 170 NFLNARAEEIVSGGMMVIIMPGI 192 (332)
Q Consensus 170 ~fL~~Ra~EL~pGG~mvl~~~gr 192 (332)
.|+++=++=+||||.|++.-.-|
T Consensus 142 ~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 142 SFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred HHHHHHHHHcCCCcEEEEecccc
Confidence 37778888899999999987664
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.38 E-value=0.077 Score=51.55 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=17.8
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~ 49 (332)
+..+|+|+|||+|.+++.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHH
Confidence 347999999999999988754
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.25 E-value=0.16 Score=51.30 Aligned_cols=21 Identities=19% Similarity=0.031 Sum_probs=17.8
Q ss_pred ceEEEeecCCCCcchHHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ 50 (332)
.-+|+|+|||+|.-|+.+.+.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~ 271 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAEL 271 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999887653
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.02 E-value=0.21 Score=46.97 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=16.4
Q ss_pred CCceEEEeecCCCCcchHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~ 48 (332)
+++-+|+|+|||+|..+..++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll 91 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVL 91 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHH
Confidence 445599999999999776554
No 126
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.99 E-value=0.072 Score=48.81 Aligned_cols=135 Identities=20% Similarity=0.318 Sum_probs=78.4
Q ss_pred CCceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc
Q 044174 28 SNIIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR 94 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~ 94 (332)
.+.-+.+|.|+|.|.-|-.++ ...++..++..... .+.-.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~---------------------------~~~v~ 106 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD---------------------------NPRVG 106 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG---------------------------GCCEE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc---------------------------CCCcc
Confidence 567899999999999997653 33444443321110 00011
Q ss_pred cceeeecCCccccCCcCC-CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174 95 EYYSAGVPGSFHHRLFPQ-SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN 173 (332)
Q Consensus 95 ~~f~~~vpgSFy~~lfP~-~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~ 173 (332)
.+|..|.- -.-|. +..|++|.-||+-.|.. .|+-.||+
T Consensus 107 ~~~~~gLQ-----~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~ 145 (218)
T PF05891_consen 107 EFYCVGLQ-----DFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLK 145 (218)
T ss_dssp EEEES-GG-----G----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHH
T ss_pred eEEecCHh-----hccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHH
Confidence 34444443 22354 79999999888877654 58899999
Q ss_pred HHHHhhccCCeEEEEe-cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCc
Q 044174 174 ARAEEIVSGGMMVIIM-PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGH 252 (332)
Q Consensus 174 ~Ra~EL~pGG~mvl~~-~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~ 252 (332)
.=.+.|+|||.+|+=- ...... ...+++ | -...||.+.++.+++++|
T Consensus 146 RCk~~L~~~G~IvvKEN~~~~~~-------------------------~~~D~~--D----sSvTRs~~~~~~lF~~AG- 193 (218)
T PF05891_consen 146 RCKQALKPNGVIVVKENVSSSGF-------------------------DEFDEE--D----SSVTRSDEHFRELFKQAG- 193 (218)
T ss_dssp HHHHHEEEEEEEEEEEEEESSSE-------------------------EEEETT--T----TEEEEEHHHHHHHHHHCT-
T ss_pred HHHHhCcCCcEEEEEecCCCCCC-------------------------cccCCc--c----CeeecCHHHHHHHHHHcC-
Confidence 8889999999888742 221110 011111 2 236788999999999999
Q ss_pred eEEeEEEEeC
Q 044174 253 FSIKTVELTN 262 (332)
Q Consensus 253 F~I~~le~~~ 262 (332)
++|.+-+.-.
T Consensus 194 l~~v~~~~Q~ 203 (218)
T PF05891_consen 194 LRLVKEEKQK 203 (218)
T ss_dssp -EEEEEEE-T
T ss_pred CEEEEecccc
Confidence 7887776543
No 127
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.16 Score=48.82 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=15.9
Q ss_pred EEEeecCCCCcchHHHHH
Q 044174 32 RLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~ 49 (332)
+|+|+|||-|.-++.+.+
T Consensus 161 ~vlDlGCG~Gvlg~~la~ 178 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAK 178 (300)
T ss_pred cEEEeCCCccHHHHHHHH
Confidence 999999999999887754
No 128
>PRK04457 spermidine synthase; Provisional
Probab=94.91 E-value=0.37 Score=45.27 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.7
Q ss_pred CCceEEEeecCCCCcchHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~ 48 (332)
+.+-+|+|+|||.|.-+..+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~ 85 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIY 85 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHH
Confidence 445689999999998877664
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.91 E-value=0.26 Score=49.82 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174 165 AKDMENFLNARAEEIVSGGMMVIIMPGI 192 (332)
Q Consensus 165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~gr 192 (332)
.+.-..+|..=++-|+|||+||......
T Consensus 353 ~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 353 VGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3455578888888899999999987554
No 130
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.81 E-value=0.14 Score=49.61 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=35.6
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
++-++|++=|=+|+|+-=. + ..-.+.+|+.-++-|+|||.|+-+++
T Consensus 193 ~dp~fDivScQF~~HYaFe--------------------t--------------ee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFE--------------------T--------------EESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CCCCcceeeeeeeEeeeec--------------------c--------------HHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 5556999999999997111 0 11234689999999999999999996
Q ss_pred c
Q 044174 191 G 191 (332)
Q Consensus 191 g 191 (332)
-
T Consensus 239 d 239 (389)
T KOG1975|consen 239 D 239 (389)
T ss_pred c
Confidence 5
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=94.79 E-value=0.3 Score=45.85 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174 165 AKDMENFLNARAEEIVSGGMMVIIMPG 191 (332)
Q Consensus 165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~g 191 (332)
.+.-..+|+.=++-|+|||++|.....
T Consensus 175 ~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 175 SALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 344456788888889999999877543
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.42 E-value=0.16 Score=44.02 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=18.1
Q ss_pred ceEEEeecCCCCcchHHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ 50 (332)
.-+|+|+|||+|..|..+++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc
Confidence 458999999999999988753
No 133
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=94.09 E-value=0.61 Score=47.01 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 165 AKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
.+.-..+|..=++-|||||+||....
T Consensus 360 ~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 360 APLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 34446778888888999999997653
No 134
>PLN02366 spermidine synthase
Probab=93.88 E-value=0.59 Score=45.12 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=17.4
Q ss_pred CCCceEEEeecCCCCcchHHHH
Q 044174 27 ASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
.+++-+|+|+|||.|..+..++
T Consensus 89 ~~~pkrVLiIGgG~G~~~rell 110 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIA 110 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHH
Confidence 3567899999999999766554
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=93.64 E-value=0.13 Score=46.27 Aligned_cols=112 Identities=18% Similarity=0.286 Sum_probs=60.5
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--ccccee-eecCCcccc
Q 044174 31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYS-AGVPGSFHH 107 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~-~~vpgSFy~ 107 (332)
..++|+|||.|...+.++.. .|+..++--|.-.+=.....+.... ..++.+ .+=...+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-----------------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~ 81 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-----------------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR 81 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-----------------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH
T ss_pred CeEEEecCCCCHHHHHHHHH-----------------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh
Confidence 39999999999988877531 2344444444433333322222211 113332 233344567
Q ss_pred CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174 108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
.++|++|++-++-++.==|-.+--. |-++. . ..||..=++-|+|||.+.+
T Consensus 82 ~~~~~~~v~~i~i~FPDPWpK~rH~-----------krRl~----~---------------~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 82 RLFPPGSVDRIYINFPDPWPKKRHH-----------KRRLV----N---------------PEFLELLARVLKPGGELYF 131 (195)
T ss_dssp HHSTTTSEEEEEEES-----SGGGG-----------GGSTT----S---------------HHHHHHHHHHEEEEEEEEE
T ss_pred hcccCCchheEEEeCCCCCcccchh-----------hhhcC----C---------------chHHHHHHHHcCCCCEEEE
Confidence 7889999999999888777443211 11221 1 1467777788999998876
Q ss_pred Ee
Q 044174 188 IM 189 (332)
Q Consensus 188 ~~ 189 (332)
.-
T Consensus 132 ~T 133 (195)
T PF02390_consen 132 AT 133 (195)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 136
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.49 E-value=0.48 Score=44.37 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=35.1
Q ss_pred CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
-.+-+|+++|..--.| ||.... -..+.+|++.-+.-|.|||+||++=-
T Consensus 163 ~~~~fDiIlcLSiTkW--------------------IHLNwg------------D~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKW--------------------IHLNWG------------DDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccccEEEEEEeeee--------------------Eecccc------------cHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 4456788888777777 444332 24577888889999999999999753
No 137
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.22 E-value=0.23 Score=47.30 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=16.6
Q ss_pred EEEeecCCCCcchHHHHHH
Q 044174 32 RLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~~ 50 (332)
+|+|+|||||.-++.++..
T Consensus 113 ~ilDlGTGSG~iai~la~~ 131 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE 131 (280)
T ss_pred cEEEecCChHHHHHHHHhh
Confidence 8999999999999887643
No 138
>PRK03612 spermidine synthase; Provisional
Probab=93.14 E-value=0.55 Score=48.52 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=17.8
Q ss_pred CCceEEEeecCCCCcchHHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
+++-+|+|+|||+|..+..+++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~ 317 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK 317 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh
Confidence 5567999999999998876653
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.03 E-value=0.56 Score=43.31 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.2
Q ss_pred CCceEEEeecCCCCcchHHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
.++-+|+|+||++|..++.++.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~ 88 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTAL 88 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHH
Confidence 3467999999999999887754
No 140
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.96 E-value=0.66 Score=42.16 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhccCCeEEE
Q 044174 164 FAKDMENFLNARAEEIVSGGMMVI 187 (332)
Q Consensus 164 ~~~d~~~fL~~Ra~EL~pGG~mvl 187 (332)
|..|+..-|..+..+||+|-++|.
T Consensus 133 F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 133 FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 345666778888899999877664
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=92.89 E-value=2.3 Score=42.55 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174 163 QFAKDMENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 163 q~~~d~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
++.+++..+++.=.+-|+|||.+++.-
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 445667777777778889999998654
No 142
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=92.68 E-value=1.8 Score=42.29 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=93.9
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR 108 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~ 108 (332)
..-..+|.|-|.|..+=.+++ .| |.+..+-=|+|.=+-..-.-. |. |--+.|-|++-
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~--------~f---------p~ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~ 233 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS--------KY---------PHIKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQD 233 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH--------hC---------CCCceeecCHHHHHhhhhhhc-CC-----cceeccccccc
Confidence 467889999999988755533 22 334444444443222221111 11 67788999998
Q ss_pred CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174 109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII 188 (332)
Q Consensus 109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~ 188 (332)
.|++- ++|.-|+||-+.. +|...||+.=++-|+|||.+++.
T Consensus 234 -~P~~d--aI~mkWiLhdwtD------------------------------------edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 234 -TPKGD--AIWMKWILHDWTD------------------------------------EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred -CCCcC--eEEEEeecccCCh------------------------------------HHHHHHHHHHHHhCCCCCEEEEE
Confidence 99887 8998888883211 58888999999999999999887
Q ss_pred ecccCCCCCCCCc--chhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174 189 MPGIPYGMPYSHL--TNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT 261 (332)
Q Consensus 189 ~~gr~~~~~~~~~--~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~ 261 (332)
=.-.+.+...+.. ......+++-.+.. +-| --++.+|++..+.++| |.+-.+-..
T Consensus 275 E~V~p~e~~~dd~~s~v~~~~d~lm~~~~---~~G--------------kert~~e~q~l~~~~g-F~~~~~~~~ 331 (342)
T KOG3178|consen 275 ENVTPEEDKFDDIDSSVTRDMDLLMLTQT---SGG--------------KERTLKEFQALLPEEG-FPVCMVALT 331 (342)
T ss_pred eccCCCCCCccccccceeehhHHHHHHHh---ccc--------------eeccHHHHHhcchhhc-CceeEEEec
Confidence 5433322211110 11211222222222 113 2478999999999999 887666544
No 143
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.66 E-value=7.3 Score=37.51 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=41.6
Q ss_pred HHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCccc--CCHHHHHHHHH
Q 044174 171 FLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS--ASSEEMVKLVD 248 (332)
Q Consensus 171 fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~--ps~~E~~~~ie 248 (332)
-|+--+..|.|||.||.+. .+- +. -.+.|..+|.... +| -||-+ +|.+|+.++++
T Consensus 231 sl~gl~~al~pgG~lIyTg--QPw--------HP-Qle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTG--QPW--------HP-QLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred HHHHHHHHhCCCcEEEEcC--CCC--------Cc-chHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHH
Confidence 4566667888999998764 221 11 1357778877551 23 36766 68999999999
Q ss_pred hCCceE
Q 044174 249 KNGHFS 254 (332)
Q Consensus 249 ~~G~F~ 254 (332)
.+| |+
T Consensus 288 ~aG-F~ 292 (311)
T PF12147_consen 288 AAG-FE 292 (311)
T ss_pred HcC-Cc
Confidence 999 65
No 144
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=92.43 E-value=0.36 Score=47.12 Aligned_cols=115 Identities=15% Similarity=0.254 Sum_probs=70.4
Q ss_pred hHHHHHHHHHH-hhhhcccC--CCCCceEEEeecCCCCcchHHHHH------------HHHHHHHHhhhhcCCCCCCCce
Q 044174 7 VKEKIVDAITR-NLNVCELS--SASNIIRLADLGCAVGSNTINAMQ------------DVLEVIKNKCHSQCPSSKLPEF 71 (332)
Q Consensus 7 ~~~~l~~ai~~-~~~~~~~~--~~~~~~~iaD~GCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~ 71 (332)
...||.+.++. .+...-.. ..-+.-+|+|.|||+|--|+..+. .|++...+....++
T Consensus 35 heeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~-------- 106 (346)
T KOG1499|consen 35 HEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNG-------- 106 (346)
T ss_pred HHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcC--------
Confidence 34566666642 22221111 134567999999999999988763 33333232222211
Q ss_pred EEEecCCCCCchHHHHhcCcccccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecC
Q 044174 72 QVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTN 151 (332)
Q Consensus 72 ~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~ 151 (332)
| ..-+--+.|.-.+-.+|-..+|++.|-|-=+||-
T Consensus 107 -----------~-----------~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll----------------------- 141 (346)
T KOG1499|consen 107 -----------L-----------EDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL----------------------- 141 (346)
T ss_pred -----------c-----------cceEEEeecceEEEecCccceeEEeehhhhHHHH-----------------------
Confidence 1 1234445666666678888999999965555543
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 152 AAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 152 ~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
+..=+...|-+|-+=|+|||.++
T Consensus 142 ------------~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 142 ------------YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ------------HhhhhhhhhhhhhhccCCCceEc
Confidence 23345567889999999999885
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=92.30 E-value=0.57 Score=43.68 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~ 49 (332)
..+|+|+|||+|.-++.++.
T Consensus 50 ~grVLDlG~GSG~Lalala~ 69 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVH 69 (241)
T ss_pred CCEEEEccChHHHHHHHHHH
Confidence 46999999999988877654
No 146
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.18 E-value=0.24 Score=51.01 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=65.4
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--cccceeeecCCcc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYSAGVPGSF 105 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~~vpgSF 105 (332)
.+...++|+|||.|..++.++.. .|+..++--|.-.+=...+.+.... -.++.+..--..+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~-----------------~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~ 408 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKM-----------------NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL 408 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHh-----------------CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 45789999999999988776531 2333333333333322222222111 1133322112223
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
....||++|+|-+|-++.=-|=.+-- .|-++. . ..||+.=+.-|+|||.+
T Consensus 409 ~~~~~~~~sv~~i~i~FPDPWpKkrh-----------~krRl~----~---------------~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 409 ILNDLPNNSLDGIYILFPDPWIKNKQ-----------KKKRIF----N---------------KERLKILQDKLKDNGNL 458 (506)
T ss_pred HHHhcCcccccEEEEECCCCCCCCCC-----------cccccc----C---------------HHHHHHHHHhcCCCCEE
Confidence 45678999999999999888843311 122222 1 13566666788899999
Q ss_pred EEEe
Q 044174 186 VIIM 189 (332)
Q Consensus 186 vl~~ 189 (332)
.+.-
T Consensus 459 ~~~T 462 (506)
T PRK01544 459 VFAS 462 (506)
T ss_pred EEEc
Confidence 8754
No 147
>PLN02672 methionine S-methyltransferase
Probab=91.76 E-value=0.5 Score=52.82 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174 165 AKDMENFLNARAEEIVSGGMMVIIMPGI 192 (332)
Q Consensus 165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~gr 192 (332)
..-.++++..=.+-|+|||.|+++++++
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEiG~~ 281 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNMGGR 281 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 3444667777778899999999999864
No 148
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=91.35 E-value=2.3 Score=38.34 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=24.6
Q ss_pred hhhhhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174 3 AADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 3 ~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
|...+-.+|.+.|. .+... ...-+|+|||||.|.--..+.
T Consensus 47 ae~riv~wl~d~~~-~~rv~-----~~A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 47 AEERIVDWLKDLIV-ISRVS-----KQADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred HHHHHHHHHHhhhh-hhhhc-----ccccceeeccCCchHHHHHHH
Confidence 34455667776665 33322 223499999999987655543
No 149
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.04 E-value=0.5 Score=44.52 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=55.2
Q ss_pred ceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccC
Q 044174 114 SIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIP 193 (332)
Q Consensus 114 svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~ 193 (332)
.+|.+.|+.||.=.++.++ .+++-|+.-+.-|||||.|++...-..
T Consensus 158 ~~D~v~s~fcLE~a~~d~~----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLD----------------------------------EYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp SEEEEEEESSHHHH-SSHH----------------------------------HHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred chhhhhhhHHHHHHcCCHH----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 5999999999987776432 233345566678999999999876432
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174 194 YGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL 260 (332)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 260 (332)
+. + .. ..-.+|.+.-+.+.+++.|+++| |.|...+.
T Consensus 204 t~--Y---~v-------------------------G~~~F~~l~l~ee~v~~al~~aG-~~i~~~~~ 239 (256)
T PF01234_consen 204 TY--Y---MV-------------------------GGHKFPCLPLNEEFVREALEEAG-FDIEDLEK 239 (256)
T ss_dssp SE--E---EE-------------------------TTEEEE---B-HHHHHHHHHHTT-EEEEEEEG
T ss_pred ee--E---EE-------------------------CCEecccccCCHHHHHHHHHHcC-CEEEeccc
Confidence 21 0 01 11236888889999999999999 99999883
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=90.49 E-value=1.7 Score=43.05 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.1
Q ss_pred CCCceEEEeecCCCCcchHHHH
Q 044174 27 ASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
.+++-+|+++|||+|.....++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelL 169 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVL 169 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHH
Confidence 4566799999999998655554
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=90.20 E-value=2.1 Score=37.53 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=23.8
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS 80 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~ 80 (332)
....+|++||||+|--++.+... . ..-.|+++|++.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~--------~---------~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL--------F---------GAARVVLTDYNE 79 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT------------------T-SEEEEEE-S-
T ss_pred cCCceEEEECCccchhHHHHHhc--------c---------CCceEEEeccch
Confidence 45679999999999888876543 0 134688888876
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=90.10 E-value=4.8 Score=39.13 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHhCCceEEeEEEE
Q 044174 238 ASSEEMVKLVDKNGHFSIKTVEL 260 (332)
Q Consensus 238 ps~~E~~~~ie~~G~F~I~~le~ 260 (332)
.+.+++.+.+++.|.=.+..+|.
T Consensus 271 ~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 271 ENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred CCHHHHHHHHHHcCCceEEEEEE
Confidence 58999999999999434544543
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=89.82 E-value=3.4 Score=44.35 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.6
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~ 49 (332)
.-+|+|+||++|.-|+.++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~ 558 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAAL 558 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHH
Confidence 35899999999999999873
No 154
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=89.35 E-value=4.2 Score=39.50 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHH
Q 044174 9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVL 52 (332)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii 52 (332)
.+|++-..++... .+...+|+|||||+|.=|-.+++.+.
T Consensus 61 ~iL~~~~~~Ia~~-----i~~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 61 EILKKHSSDIAAS-----IPSGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred HHHHHHHHHHHHh-----cCCCCEEEEECCCchHHHHHHHHHHH
Confidence 3555544444433 24456899999999998888877654
No 155
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=89.26 E-value=0.83 Score=43.73 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=27.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS 80 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~ 80 (332)
++++|-..|||+|-=.-.++--+.+.... ....++|+-.|+-.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~---------~~~~~~I~atDIs~ 157 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGT---------APGRWKVFASDIDT 157 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcc---------cCCCcEEEEEECCH
Confidence 46999999999997665554333332211 01257888888754
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=88.86 E-value=1.1 Score=42.09 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=33.2
Q ss_pred CceEEEeecCCCCcchHHHHHH------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQD------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNT 85 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~ 85 (332)
..-+|+|+|||+|..|..+++. .++.+++.. ..+.+++...|...-++..
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~-------~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETF-------AEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhh-------ccCceEEEEChhhcCCHHH
Confidence 3468999999999999988753 333333321 1145778888776655544
No 157
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=87.01 E-value=0.74 Score=45.05 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=82.1
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cc-cccceeeecCCccc
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQ-QREYYSAGVPGSFH 106 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~-~~~~f~~~vpgSFy 106 (332)
..-.|+|.|||+|-.|+..+++=-..|.+...+ .-..-.+.| .. .-.-.+..+||--.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS--------------------~MAqyA~~Lv~~N~~~~rItVI~GKiE 236 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS--------------------EMAQYARKLVASNNLADRITVIPGKIE 236 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh--------------------HHHHHHHHHHhcCCccceEEEccCccc
Confidence 346789999999999999876532222111000 000001111 11 11346778888887
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
+--+|. .+|+++| -|-+ .+-+ -++=+..+|.+| +=|+|.|.|+
T Consensus 237 dieLPE-k~DviIS---------EPMG------------~mL~--------------NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 237 DIELPE-KVDVIIS---------EPMG------------YMLV--------------NERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred cccCch-hccEEEe---------ccch------------hhhh--------------hHHHHHHHHHHH-hhcCCCCccc
Confidence 777765 5888888 3422 2211 135567888999 9999999999
Q ss_pred EEecccCCCCCCCCcchhHHHHHHH---------------HHHHHHHHhhccchhhhcccCcCccc
Q 044174 187 IIMPGIPYGMPYSHLTNGVMYDLMA---------------TIFMELANEQLITEAELDSFNLPIYS 237 (332)
Q Consensus 187 l~~~gr~~~~~~~~~~~~~~~~~l~---------------~al~~mv~eGli~~e~~d~fn~P~y~ 237 (332)
=+++-. .-.|.+. .....+... ..|..-+-+|+..+--+|.|.+-+..
T Consensus 280 PT~gdi-HlAPFsD--E~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~Rilm 342 (517)
T KOG1500|consen 280 PTVGDI-HLAPFSD--EQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILM 342 (517)
T ss_pred Ccccce-eecccch--HHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceee
Confidence 877432 1112211 111112222 23333345577777777877766554
No 158
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=86.71 E-value=23 Score=33.70 Aligned_cols=176 Identities=20% Similarity=0.308 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHH-----------HH----HHHHHhhhhcCCCCCCCceE
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQD-----------VL----EVIKNKCHSQCPSSKLPEFQ 72 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~-----------ii----~~i~~~~~~~~~~~~~~~~~ 72 (332)
.+-|.+++.+.+.... ...+..+|+-=|||-|+-+..++.. .+ .-|-..+. ..-++.
T Consensus 37 ~~~I~~~L~~~~p~~~--~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~------~~~~~~ 108 (270)
T PF07942_consen 37 YSPILDELESLFPPAG--SDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCS------QPNQFT 108 (270)
T ss_pred HHHHHHHHHHhhcccc--cCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccC------CCCcEE
Confidence 3445566666654221 1466799999999999999887621 00 11111111 122333
Q ss_pred EE-ecCCCCCchH--HHHhcC--ccc-------ccceeeecCCccccCCcCC---CceeEEEecCccccccCCccccccC
Q 044174 73 VF-FNDKTSNDFN--TLFTSL--PQQ-------REYYSAGVPGSFHHRLFPQ---SSIHFAHCSYALHWLSKVPEELLDE 137 (332)
Q Consensus 73 v~-~nDlp~NDFn--~lf~~l--~~~-------~~~f~~~vpgSFy~~lfP~---~svd~~~S~~alHWLs~~P~~~~~~ 137 (332)
++ |.+..+|-.+ ..++.+ |+- .+--.+++.|+|-.---++ +++|.|.+.+=+
T Consensus 109 I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI------------- 175 (270)
T PF07942_consen 109 IYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI------------- 175 (270)
T ss_pred EecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-------------
Confidence 32 2223333222 222221 211 1345678888888766666 688888884211
Q ss_pred CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHH
Q 044174 138 NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMEL 217 (332)
Q Consensus 138 ~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~m 217 (332)
.| +++.-.+|..-.+-||||| ..+.++=..-+. + ++
T Consensus 176 -------------DT------------A~Ni~~Yi~tI~~lLkpgG-~WIN~GPLlyh~-----------~-------~~ 211 (270)
T PF07942_consen 176 -------------DT------------AENIIEYIETIEHLLKPGG-YWINFGPLLYHF-----------E-------PM 211 (270)
T ss_pred -------------ec------------hHHHHHHHHHHHHHhccCC-EEEecCCccccC-----------C-------CC
Confidence 11 2455568888889999999 333332111100 0 00
Q ss_pred HHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174 218 ANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL 260 (332)
Q Consensus 218 v~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~ 260 (332)
+ +. +-.....|.||++.++++-| |++++-+.
T Consensus 212 ---~-~~-------~~~sveLs~eEi~~l~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 212 ---S-IP-------NEMSVELSLEEIKELIEKLG-FEIEKEES 242 (270)
T ss_pred ---C-CC-------CCcccCCCHHHHHHHHHHCC-CEEEEEEE
Confidence 0 00 00115678999999999999 99987665
No 159
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=86.57 E-value=5.5 Score=36.80 Aligned_cols=36 Identities=8% Similarity=0.015 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174 7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
..|.|.+-+.++. .+..-+|++-|||.|.+..-+++
T Consensus 28 pnp~L~~~~~~l~-------~~~~~rvLvPgCGkg~D~~~LA~ 63 (226)
T PRK13256 28 PNEFLVKHFSKLN-------INDSSVCLIPMCGCSIDMLFFLS 63 (226)
T ss_pred CCHHHHHHHHhcC-------CCCCCeEEEeCCCChHHHHHHHh
Confidence 3456655554421 13346999999999999998874
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=86.28 E-value=4.6 Score=36.39 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=25.9
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS 80 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~ 80 (332)
..+++|-..|||+|-=+-.++--+-+..... ..-.++|+-+|+-.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~--------~~~~~~I~atDi~~ 74 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGA--------LGWDFRILATDISP 74 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S---------TT-SEEEEEEES-H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhccc--------CCCceEEEEEECCH
Confidence 4689999999999976665544333322211 12268888888743
No 161
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.19 E-value=0.89 Score=37.33 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=33.5
Q ss_pred eeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174 115 IHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190 (332)
Q Consensus 115 vd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~ 190 (332)
+|++.|.+..-| ||+ ...-..+.+|++.-++-|+|||+|+++--
T Consensus 2 yDvilclSVtkW--------------------IHL------------n~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------------IHL------------NWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES-HHH--------------------HHH------------HHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEeeEE--------------------EEe------------cCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 688999888888 554 33445677888889999999999999863
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=86.13 E-value=26 Score=32.03 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=19.3
Q ss_pred CcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174 234 PIYSASSEEMVKLVDKNGHFSIKTVELTN 262 (332)
Q Consensus 234 P~y~ps~~E~~~~ie~~G~F~I~~le~~~ 262 (332)
|=|.=+.+||++++. .+ |+|+.++..+
T Consensus 166 PPf~v~~~ev~~l~~-~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 166 PPFSVTEEEVRELFG-PG-FEIEELEEED 192 (218)
T ss_dssp SS----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred cCCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence 446668899999999 66 9999999754
No 163
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=85.96 E-value=2.1 Score=39.89 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=18.7
Q ss_pred CceEEEeecCCCCcchHHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ 50 (332)
+.-+|+|+|||+|..|..+.+.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh
Confidence 3478999999999999998753
No 164
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.27 E-value=1.6 Score=39.33 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=29.5
Q ss_pred ceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCCCCCCceEEEecCC
Q 044174 30 IIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDK 78 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDl 78 (332)
.-+|+|+|||+|.-++... ...++..++.+.... -.+.++-.|.
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~dv 102 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVADV 102 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcch
Confidence 4579999999999998876 456666666654422 2355555554
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=83.11 E-value=1.1 Score=41.39 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.0
Q ss_pred CCceEEEeecCCCCcchHHHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ 50 (332)
.+.-+++|+|||+|.-|..+++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc
Confidence 34569999999999999887654
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=83.00 E-value=2.9 Score=40.09 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=34.4
Q ss_pred CceEEEeecCCCCcchHHHHHH------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCch
Q 044174 29 NIIRLADLGCAVGSNTINAMQD------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDF 83 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDF 83 (332)
..-+|+|+|||.|.-|..++.. .++.+++.....+ ..+.++++..|....|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTEF 99 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhcc
Confidence 3468999999999999888743 4555555443211 13458888887765443
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=82.98 E-value=13 Score=34.25 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=35.4
Q ss_pred ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185 (332)
Q Consensus 106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m 185 (332)
...++|++|+|-++-++.==|=.+-- +|-++-. . .||+.=++-|+|||.+
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~~------------~-------~fl~~~a~~Lk~gG~l 160 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRH-----------HKRRLTQ------------P-------EFLKLYARKLKPGGVL 160 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccc-----------cccccCC------------H-------HHHHHHHHHccCCCEE
Confidence 34566777999999998888833311 2334321 1 3566666778899999
Q ss_pred EEEe
Q 044174 186 VIIM 189 (332)
Q Consensus 186 vl~~ 189 (332)
.+..
T Consensus 161 ~~aT 164 (227)
T COG0220 161 HFAT 164 (227)
T ss_pred EEEe
Confidence 8865
No 168
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=82.44 E-value=23 Score=33.65 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=30.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS 80 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~ 80 (332)
++++|--.|||+|-=.-.++-.+.+..... .+..++|+-.|.-.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~--------~~~~~~I~AtDId~ 139 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKL--------AGFRVKILATDIDL 139 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccc--------cCCceEEEEEECCH
Confidence 689999999999977666554444443320 24579999999743
No 169
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=81.90 E-value=5.2 Score=37.06 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=18.0
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~ 49 (332)
+.-+|+|+|||+|..|..+.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 357899999999999988864
No 170
>PRK11524 putative methyltransferase; Provisional
Probab=81.33 E-value=3.3 Score=39.25 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhccCCeEEEEe
Q 044174 168 MENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 168 ~~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
+..+|+.=.+-|||||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 4566666678899999999964
No 171
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=79.28 E-value=2.3 Score=40.91 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174 7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
+..+.-+++.++. .+.-+|+|+|||||--++...
T Consensus 147 TT~lcl~~l~~~~--------~~g~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 147 TTRLCLELLEKYV--------KPGKRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp HHHHHHHHHHHHS--------STTSEEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHHHhc--------cCCCEEEEeCCcHHHHHHHHH
Confidence 3445555665542 222499999999999988765
No 172
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=78.54 E-value=8.8 Score=36.29 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=17.7
Q ss_pred CceEEEeecCCCCcchHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~ 48 (332)
+..+++|+|.|+|.-|..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 56889999999999998875
No 173
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=76.97 E-value=27 Score=33.04 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=62.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc----Cccc-ccceeeecC
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS----LPQQ-REYYSAGVP 102 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~----l~~~-~~~f~~~vp 102 (332)
....+|+|-.||+|.--+.++..+.+. ... .++.+++-.|.- ........ +... ....-....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~----~~~------~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK----RNK------IKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC----HHH------HCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred cccceeechhhhHHHHHHHHHHhhccc----ccc------cccceeEeecCc--HHHHHHHHhhhhhhcccccccccccc
Confidence 446789999999998877776655443 111 246777766662 22211111 1110 111112233
Q ss_pred CccccCCcC-CCceeEEEecCc--cc-cccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044174 103 GSFHHRLFP-QSSIHFAHCSYA--LH-WLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEE 178 (332)
Q Consensus 103 gSFy~~lfP-~~svd~~~S~~a--lH-WLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~E 178 (332)
-+|-...+. ...+|++.++=- .. | ........ ..|.++ ... ....|+ .|+..=-+-
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~--~~~~~~---~~~-----------~~~~~~-~Fi~~~l~~ 172 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKD--ERFKKY---FPP-----------KSNAEY-AFIEHALSL 172 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES----STGGGCTT--CCCTTC---SSS-----------TTEHHH-HHHHHHHHT
T ss_pred ccccccccccccccccccCCCCcccccc---cccccccc--cccccc---CCC-----------ccchhh-hhHHHHHhh
Confidence 445455554 689999999622 22 3 11111110 011111 000 001222 266666788
Q ss_pred hccCCeEEEEecc
Q 044174 179 IVSGGMMVIIMPG 191 (332)
Q Consensus 179 L~pGG~mvl~~~g 191 (332)
|++||++++.++.
T Consensus 173 Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 173 LKPGGRAAIILPN 185 (311)
T ss_dssp EEEEEEEEEEEEH
T ss_pred cccccceeEEecc
Confidence 9999999999864
No 174
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.66 E-value=8.9 Score=34.57 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEecccC
Q 044174 162 SQFAKDMENFLNARAEEIVSGGMMVIIMPGIP 193 (332)
Q Consensus 162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~ 193 (332)
+..+.=..+||..--.=|.|-|.+.+...-+.
T Consensus 141 ~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 141 KDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 44445556777777777789999999887653
No 175
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=75.61 E-value=4.5 Score=34.05 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.9
Q ss_pred CCCceEEEeecCCCCcchHHHHH
Q 044174 27 ASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
.....+|+|+|||.|.-|..+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 36689999999999999988765
No 176
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=74.95 E-value=17 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=17.7
Q ss_pred HHHHHHHhhccCCeEEEEecccCC
Q 044174 171 FLNARAEEIVSGGMMVIIMPGIPY 194 (332)
Q Consensus 171 fL~~Ra~EL~pGG~mvl~~~gr~~ 194 (332)
.++...+-|+|||.+++.......
T Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 137 ALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCC
Confidence 345555668899999999877654
No 177
>PLN02823 spermine synthase
Probab=74.38 E-value=36 Score=33.28 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=17.7
Q ss_pred CCCceEEEeecCCCCcchHHHHH
Q 044174 27 ASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
.+++-+|+-+|+|.|..+..+++
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~ 123 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLR 123 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHh
Confidence 35567899999999987766653
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=73.40 E-value=2.8 Score=42.60 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.2
Q ss_pred ceEEEeecCCCCcchHHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~ 50 (332)
..+|+|+|||+|+-+...+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A 207 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQA 207 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHT
T ss_pred ceEEEEeCCCccHHHHHHHHH
Confidence 589999999999998877654
No 179
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=73.40 E-value=4.5 Score=38.89 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.5
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~ 49 (332)
.-+|+|+|||+|..++.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 36899999999999988874
No 180
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=73.13 E-value=4 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.1
Q ss_pred ceEEEeecCCCCcchHHHH
Q 044174 30 IIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~ 48 (332)
..+|+|+|||+|.-++.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 54 DARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CCEEEEcCCCccHHHHHHH
Confidence 3589999999999998654
No 181
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=72.90 E-value=3.3 Score=36.07 Aligned_cols=38 Identities=24% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCC
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSN 81 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~N 81 (332)
.+..+++|+|||.|+-|-.+++.. .+.-.|+-.|+...
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~----------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRG----------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTST----------------TTEEEEEEEESSST
T ss_pred ccccEEEEcCCcccceeeeeeecc----------------cccceEEEEecccc
Confidence 367999999999999986664432 13466777777665
No 182
>PRK04148 hypothetical protein; Provisional
Probab=72.60 E-value=13 Score=31.57 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=15.0
Q ss_pred CceEEEeecCCCCc-chHHHH
Q 044174 29 NIIRLADLGCAVGS-NTINAM 48 (332)
Q Consensus 29 ~~~~iaD~GCs~G~-ns~~~~ 48 (332)
+..+|+|+|||.|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 35789999999997 554444
No 183
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=71.90 E-value=5 Score=40.51 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.4
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~ 49 (332)
..+|+|+|||+|..|+.+..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH
Confidence 46899999999999988764
No 184
>PLN02476 O-methyltransferase
Probab=71.39 E-value=31 Score=32.91 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=18.9
Q ss_pred CCceEEEeecCCCCcchHHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
.++-+|+|+||++|..|+.++.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~ 138 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVAL 138 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHH
Confidence 3467999999999999998765
No 185
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=71.18 E-value=15 Score=36.89 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=17.1
Q ss_pred ceEEEeecCCCCcchHHHH
Q 044174 30 IIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~ 48 (332)
.-+|+|+|||+|..++.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999876
No 186
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=70.67 E-value=4.6 Score=38.58 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=40.6
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
.-.+++.|+|...|.+.+||||..-. .+ ..|+--.++|+|||.+.
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~R----------------------------R~-------~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRER----------------------------RE-------RALEELLRVLRPGGNAL 140 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHH----------------------------HH-------HHHHHHHHHhcCCCceE
Confidence 34578899999999999999986221 11 12334447889999999
Q ss_pred EEecccCCCCC
Q 044174 187 IIMPGIPYGMP 197 (332)
Q Consensus 187 l~~~gr~~~~~ 197 (332)
+...+..-...
T Consensus 141 vyvwa~~q~~~ 151 (293)
T KOG1331|consen 141 VYVWALEQHQS 151 (293)
T ss_pred EEEehhhccCc
Confidence 99988755443
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=68.30 E-value=6.9 Score=34.83 Aligned_cols=37 Identities=14% Similarity=-0.002 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
...+.+|+-..+... -..-+++|++||+|.-++.+++
T Consensus 33 ~~~vrea~f~~l~~~-----~~g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 33 TRVVRELFFNILRPE-----IQGAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred hHHHHHHHHHHHHHh-----cCCCEEEEecCCCcHHHHHHHh
Confidence 345566665444221 1246899999999999998874
No 188
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.86 E-value=50 Score=30.52 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174 9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~ 48 (332)
|-+...+-++++.. ...-...+|+|.|+|.-|-.+.
T Consensus 66 p~mha~~le~L~~~----L~pG~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 66 PHMHATALEYLDDH----LQPGASFLDVGSGSGYLTACFA 101 (237)
T ss_pred hHHHHHHHHHHHHh----hccCcceeecCCCccHHHHHHH
Confidence 33444444555432 2445889999999999887654
No 189
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=66.63 E-value=36 Score=31.84 Aligned_cols=24 Identities=25% Similarity=0.190 Sum_probs=16.7
Q ss_pred CCceEEEeecCCCCcchHHHHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDV 51 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~i 51 (332)
...-+|++-|.|+|.-|..++..+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHH
T ss_pred CCCCEEEEecCCcHHHHHHHHHHh
Confidence 345899999999999999987544
No 190
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=66.61 E-value=8.2 Score=35.72 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF 87 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf 87 (332)
++.|-.||..-++.. + .....+|+-||.|+| .|..-++.|++. .| .-.-|-|+.-+.=|+-.+.
T Consensus 55 RSKLaAai~~Gl~~~--~-ik~gskVLYLGAasG-TTVSHvSDIvg~-------~G-----~VYaVEfs~r~~rdL~~la 118 (229)
T PF01269_consen 55 RSKLAAAILKGLENI--P-IKPGSKVLYLGAASG-TTVSHVSDIVGP-------DG-----VVYAVEFSPRSMRDLLNLA 118 (229)
T ss_dssp T-HHHHHHHTT-S----S---TT-EEEEETTTTS-HHHHHHHHHHTT-------TS-----EEEEEESSHHHHHHHHHHH
T ss_pred hhHHHHHHHcCcccc--C-CCCCCEEEEecccCC-CccchhhhccCC-------CC-----cEEEEEecchhHHHHHHHh
Confidence 445666775433322 2 344689999999996 455556666551 11 1233333333333555555
Q ss_pred hcCcccccceeeecCCccccCCcCCCceeEEEe
Q 044174 88 TSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120 (332)
Q Consensus 88 ~~l~~~~~~f~~~vpgSFy~~lfP~~svd~~~S 120 (332)
+..+.--++.--|--=.=|..+++ .+|++|+
T Consensus 119 ~~R~NIiPIl~DAr~P~~Y~~lv~--~VDvI~~ 149 (229)
T PF01269_consen 119 KKRPNIIPILEDARHPEKYRMLVE--MVDVIFQ 149 (229)
T ss_dssp HHSTTEEEEES-TTSGGGGTTTS----EEEEEE
T ss_pred ccCCceeeeeccCCChHHhhcccc--cccEEEe
Confidence 554431111111111112556655 8999998
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=66.22 E-value=28 Score=32.93 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=41.7
Q ss_pred ceEEEeecCCCCcchHHHHH------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQ------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF 87 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf 87 (332)
.-+|.++|+|.|.-|..+++ .++..+++... ....++|+..|.=.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~------~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA------PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc------cccceEEEeCchhcCcchhhc
Confidence 68999999999999999984 45555655532 245799999999999999876
No 192
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=65.84 E-value=8.4 Score=36.13 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCceEEEeecCCCCcchHHHHHH-HHHHHHHhhhhcCCCCCCCc-eEEEecCCCCCchHHHHhcCcccccceeeecCCcc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQD-VLEVIKNKCHSQCPSSKLPE-FQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSF 105 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~-ii~~i~~~~~~~~~~~~~~~-~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSF 105 (332)
.+-.+|+|-=.|=|..++..+.. .+..+. . .+ .|. +++ ---|.|+.-.. ..-+--+.|.-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~Vit-v-Ek------dp~VLeL----a~lNPwSr~l~------~~~i~iilGD~ 194 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVIT-V-EK------DPNVLEL----AKLNPWSRELF------EIAIKIILGDA 194 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEE-E-ee------CCCeEEe----eccCCCCcccc------ccccEEecccH
Confidence 45689999988999998876543 111110 0 00 111 110 01122222111 11133455555
Q ss_pred cc--CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174 106 HH--RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG 183 (332)
Q Consensus 106 y~--~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG 183 (332)
|+ +=|+++|+|++.- .|+-+. -..+.|++.|-+.+-+.|+ |||
T Consensus 195 ~e~V~~~~D~sfDaIiH---------DPPRfS-------------------~AgeLYseefY~El~RiLk-------rgG 239 (287)
T COG2521 195 YEVVKDFDDESFDAIIH---------DPPRFS-------------------LAGELYSEEFYRELYRILK-------RGG 239 (287)
T ss_pred HHHHhcCCccccceEee---------CCCccc-------------------hhhhHhHHHHHHHHHHHcC-------cCC
Confidence 54 4589999999875 454332 1236788877777776666 999
Q ss_pred eEEEEec
Q 044174 184 MMVIIMP 190 (332)
Q Consensus 184 ~mvl~~~ 190 (332)
+|+=-.+
T Consensus 240 rlFHYvG 246 (287)
T COG2521 240 RLFHYVG 246 (287)
T ss_pred cEEEEeC
Confidence 9987764
No 193
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.24 E-value=3.1 Score=38.88 Aligned_cols=64 Identities=19% Similarity=0.362 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHH
Q 044174 167 DMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKL 246 (332)
Q Consensus 167 d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ 246 (332)
++..++-.-+.-|+|||.|.++.=--+..+ +. .+.- .--|.-+..=+++.
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-------~f---~l~p--------------------s~RyAH~~~YVr~~ 252 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDG-------GF---VLGP--------------------SQRYAHSESYVRAL 252 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCC-------Ce---ecch--------------------hhhhccchHHHHHH
Confidence 566788888999999999998863322211 00 1111 12377778889999
Q ss_pred HHhCCceEEeEEEEe
Q 044174 247 VDKNGHFSIKTVELT 261 (332)
Q Consensus 247 ie~~G~F~I~~le~~ 261 (332)
++..| |+|..++-.
T Consensus 253 l~~~G-l~~i~~~~t 266 (287)
T COG4976 253 LAASG-LEVIAIEDT 266 (287)
T ss_pred HHhcC-ceEEEeecc
Confidence 99999 898888743
No 194
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=64.99 E-value=7.4 Score=38.42 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.9
Q ss_pred eEEEeecCCCCcchHHHHH
Q 044174 31 IRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~ 49 (332)
-+|+|+|||+|..++.+++
T Consensus 235 ~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CEEEEccCCccHHHHHHhh
Confidence 5899999999999998873
No 195
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=64.35 E-value=4.5 Score=35.92 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCH
Q 044174 204 GVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240 (332)
Q Consensus 204 ~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~ 240 (332)
+.+...+.+.|++||++|+|+-|+..+-|+=|-|||.
T Consensus 39 ~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 39 QIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred ccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 4456788999999999999999999999999999984
No 196
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.07 E-value=3.9 Score=36.69 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhccchhhhcccCcCcccCCH
Q 044174 207 YDLMATIFMELANEQLITEAELDSFNLPIYSASS 240 (332)
Q Consensus 207 ~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~ 240 (332)
-..+.+++..||++|+|..+++.+-|+=|-|||.
T Consensus 29 ~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~ 62 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQ 62 (188)
T ss_pred hhhHHHHHHHHhccccchhhhccCeeEEEecChH
Confidence 3588999999999999999999999999999985
No 197
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=63.63 E-value=7.3 Score=38.37 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhcc-cCCCCCceEEEeecCCCCcchHHHHH
Q 044174 9 EKIVDAITRNLNVCE-LSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 9 ~~l~~ai~~~~~~~~-~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
=.|+||+........ ........+++|+|||+|+-|-.+++
T Consensus 190 lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~ 231 (357)
T PRK11760 190 LKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVR 231 (357)
T ss_pred HHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHH
Confidence 367788765432110 01134568999999999999977764
No 198
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=61.54 E-value=63 Score=33.17 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.0
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~ 49 (332)
...+|+|++||.|+=|..+++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~ 133 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAA 133 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHH
Confidence 447999999999999988765
No 199
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=60.23 E-value=17 Score=29.93 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=15.0
Q ss_pred EEEeecCCCCcchHHHHH
Q 044174 32 RLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~ 49 (332)
+|+|+||+.|.-|+.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~ 18 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFAR 18 (143)
T ss_pred CEEEccCCccHHHHHHHH
Confidence 589999999998877653
No 200
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=58.39 E-value=58 Score=30.02 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHh
Q 044174 9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFT 88 (332)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~ 88 (332)
.+|.+.+++...... .....++++|+||=+..|.+.- . +.|.|.--||-+.+=
T Consensus 33 K~lv~wL~~~~~~~~--~~~~~lrlLEVGals~~N~~s~-~-------------------~~fdvt~IDLns~~~----- 85 (219)
T PF11968_consen 33 KWLVEWLKELGVRPK--NGRPKLRLLEVGALSTDNACST-S-------------------GWFDVTRIDLNSQHP----- 85 (219)
T ss_pred HHHHHHhhhhccccc--cccccceEEeecccCCCCcccc-c-------------------CceeeEEeecCCCCC-----
Confidence 355566665543321 1345699999999887877542 1 223344444432100
Q ss_pred cCcccccceeeecCCccccCCcC---CCceeEEEecCccccccCCccc
Q 044174 89 SLPQQREYYSAGVPGSFHHRLFP---QSSIHFAHCSYALHWLSKVPEE 133 (332)
Q Consensus 89 ~l~~~~~~f~~~vpgSFy~~lfP---~~svd~~~S~~alHWLs~~P~~ 133 (332)
.+ .=-.|.+|..| ++++|+|.+|-.|.. +|..
T Consensus 86 ~I----------~qqDFm~rplp~~~~e~FdvIs~SLVLNf---VP~p 120 (219)
T PF11968_consen 86 GI----------LQQDFMERPLPKNESEKFDVISLSLVLNF---VPDP 120 (219)
T ss_pred Cc----------eeeccccCCCCCCcccceeEEEEEEEEee---CCCH
Confidence 00 01134555554 789999999998887 5643
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=57.30 E-value=6.7 Score=34.45 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=16.1
Q ss_pred EEEeecCCCCcchHHHHHH
Q 044174 32 RLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~~ 50 (332)
+|+|.-||.|+||+.++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999999854
No 202
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=56.61 E-value=13 Score=34.63 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174 10 KIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 10 ~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
-|++|+.+.- + ..+.-+++|+|.|+|+-|-.+++
T Consensus 66 KL~~ale~F~-l-----~~k~kv~LDiGsSTGGFTd~lLq 99 (245)
T COG1189 66 KLEKALEEFE-L-----DVKGKVVLDIGSSTGGFTDVLLQ 99 (245)
T ss_pred HHHHHHHhcC-c-----CCCCCEEEEecCCCccHHHHHHH
Confidence 4566665422 2 46678999999999999988765
No 203
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=56.16 E-value=79 Score=29.37 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=35.5
Q ss_pred CceEEEeecCCCCcchHHHHH------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQ------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTL 86 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~l 86 (332)
+.-.|+|+|.|.|.-|-.+.+ ...+.+++.+. ..+.+++++.|.-.=|....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHh
Confidence 468999999999999999874 34555555432 14568888888665555543
No 204
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=55.91 E-value=21 Score=33.50 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH--------------HHHHHHHHHhhhhcCCCCCCCceEEE
Q 044174 9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM--------------QDVLEVIKNKCHSQCPSSKLPEFQVF 74 (332)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~ 74 (332)
|.|++-..++... .+.+-+|+|+|||-=|-++..| ..+++.+....... .++..+-
T Consensus 90 ~~Ld~fY~~if~~-----~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~ 159 (251)
T PF07091_consen 90 PNLDEFYDEIFGR-----IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDAR 159 (251)
T ss_dssp GGHHHHHHHHCCC-----S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEE
T ss_pred hhHHHHHHHHHhc-----CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCccee
Confidence 3444444444332 3558899999999777776555 44566555543332 2455555
Q ss_pred ecCCCCC
Q 044174 75 FNDKTSN 81 (332)
Q Consensus 75 ~nDlp~N 81 (332)
+.|+-++
T Consensus 160 v~Dl~~~ 166 (251)
T PF07091_consen 160 VRDLLSD 166 (251)
T ss_dssp EE-TTTS
T ss_pred Eeeeecc
Confidence 5565544
No 205
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.36 E-value=8.3 Score=34.46 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCH
Q 044174 204 GVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240 (332)
Q Consensus 204 ~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~ 240 (332)
+.+|..+.++|+.||++|++..+++..-|.=|-|||.
T Consensus 38 gIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~ 74 (203)
T KOG3433|consen 38 GIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSE 74 (203)
T ss_pred ceehhHHHHHHHHHhccchHHHHHhcccccccccchH
Confidence 4457788999999999999999999999999999985
No 206
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=53.60 E-value=1.4e+02 Score=26.87 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=33.9
Q ss_pred CceEEEeecCCCCcchHHHHH-------------HHHHHHHHhhhhcCCCCCCCceEEEecCCC
Q 044174 29 NIIRLADLGCAVGSNTINAMQ-------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKT 79 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~-------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp 79 (332)
..-+++|+=+|+|...+..++ .....|++.....+ ...+.+++.+|--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~---~~~~~~~~~~da~ 103 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG---LEGEARVLRNDAL 103 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CccceEEEeecHH
Confidence 357999999999999999984 35566666544332 1356788877754
No 207
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=53.03 E-value=7.6 Score=35.65 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=15.7
Q ss_pred CceEEEeecCCCCcchHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAM 48 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~ 48 (332)
...-+||+|||=|+-.+.+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Ls 79 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLA 79 (249)
T ss_pred ccceEEeeccCccchhhhcc
Confidence 45889999999997766543
No 208
>PRK13699 putative methylase; Provisional
Probab=52.94 E-value=28 Score=31.97 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhccCCeEEEEe
Q 044174 169 ENFLNARAEEIVSGGMMVIIM 189 (332)
Q Consensus 169 ~~fL~~Ra~EL~pGG~mvl~~ 189 (332)
..+++.=++-|||||.|++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 355666667899999998744
No 209
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=52.35 E-value=44 Score=32.75 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.9
Q ss_pred EEEeecCCCCcchHHHHH
Q 044174 32 RLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~ 49 (332)
+|+|+|||+|.-|+.+..
T Consensus 200 ~vlDl~~G~G~~sl~la~ 217 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQ 217 (353)
T ss_pred cEEEEeccccHHHHHHHH
Confidence 699999999999997663
No 210
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=51.41 E-value=42 Score=35.60 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCceEEEeecCCCCcchHHHHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDV 51 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~i 51 (332)
.+.++|+|+|=|+|-|++..++..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~ 79 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAF 79 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHH
Confidence 456999999999999999998764
No 211
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=51.05 E-value=1.2e+02 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHH
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDV 51 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~i 51 (332)
.++-+|+++|.+.|..|+.++..+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l 81 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALAL 81 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhC
Confidence 457899999999999999887643
No 212
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=48.99 E-value=9.9 Score=31.25 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCceEEEeecCCCCcchHHH
Q 044174 28 SNIIRLADLGCAVGSNTINA 47 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~ 47 (332)
.+....+|+|||.|--.-.+
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL 76 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYIL 76 (112)
T ss_pred CCCCceEEccCCchHHHHHH
Confidence 35678999999998665544
No 213
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=46.77 E-value=70 Score=31.42 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=28.7
Q ss_pred eEEEeecCCCCcchHHHHH------------HHHHHHHHhhhhcCCCCCCCceEEEecCC
Q 044174 31 IRLADLGCAVGSNTINAMQ------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDK 78 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDl 78 (332)
-+++|++||+|.-|+.+.. ..++..++.....+ ...++++..|.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~ 263 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSA 263 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCH
Confidence 4699999999999997663 34444444433322 22577777776
No 214
>smart00400 ZnF_CHCC zinc finger.
Probab=44.37 E-value=20 Score=25.20 Aligned_cols=21 Identities=24% Similarity=0.448 Sum_probs=17.2
Q ss_pred eEEEeecCCCCcchHHHHHHH
Q 044174 31 IRLADLGCAVGSNTINAMQDV 51 (332)
Q Consensus 31 ~~iaD~GCs~G~ns~~~~~~i 51 (332)
-..=++||+.|++.|.+++.+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 446789999999999988754
No 215
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=43.21 E-value=27 Score=27.04 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHh
Q 044174 205 VMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDK 249 (332)
Q Consensus 205 ~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~ 249 (332)
.+...+..+|+.|...|.+++++-|....|.+.|+ +.-+.+|..
T Consensus 11 rl~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~s-qqARrLLD~ 54 (81)
T cd08788 11 RLQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPS-QQARRLLDL 54 (81)
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcchhhcCCCChH-HHHHHHHHH
Confidence 34567889999999999999999999999999887 445666654
No 216
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=43.03 E-value=15 Score=32.03 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=15.4
Q ss_pred CCceEEEeecCCCCcchHH
Q 044174 28 SNIIRLADLGCAVGSNTIN 46 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~ 46 (332)
-+..+++|||||+|--++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a 65 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIA 65 (185)
T ss_pred ccCcchhhhcCchhhhHHH
Confidence 4467899999999987744
No 217
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=42.76 E-value=2.6e+02 Score=26.59 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHH
Q 044174 7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTL 86 (332)
Q Consensus 7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~l 86 (332)
.+..|..+|..=++..- ...--+|+=||.++|..- .-++.|+. .. -.-.-|=|++-+.-|...+
T Consensus 137 frSKLAA~I~gGvdnih---ikpGsKVLYLGAasGttV-SHvSDiVG-------pe-----G~VYAVEfs~rsGRdL~nm 200 (317)
T KOG1596|consen 137 FRSKLAAGILGGVDNIH---IKPGSKVLYLGAASGTTV-SHVSDIVG-------PE-----GCVYAVEFSHRSGRDLINM 200 (317)
T ss_pred HHHHHHHHhhcCcccee---ecCCceEEEeeccCCcee-ehhhcccC-------CC-----ceEEEEEecccchHHHHHH
Confidence 45667777764443321 244579999999998653 22222221 11 1245566888888888888
Q ss_pred HhcCcccccceeeecCCccccCCcCCCceeEEEe
Q 044174 87 FTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120 (332)
Q Consensus 87 f~~l~~~~~~f~~~vpgSFy~~lfP~~svd~~~S 120 (332)
.+..+.--++---|--=.=|.-|+| -+|++||
T Consensus 201 AkkRtNiiPIiEDArhP~KYRmlVg--mVDvIFa 232 (317)
T KOG1596|consen 201 AKKRTNIIPIIEDARHPAKYRMLVG--MVDVIFA 232 (317)
T ss_pred hhccCCceeeeccCCCchheeeeee--eEEEEec
Confidence 8876542111111111112455555 8999998
No 218
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=42.09 E-value=2.2e+02 Score=28.54 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=40.9
Q ss_pred HhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHH
Q 044174 177 EEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVD 248 (332)
Q Consensus 177 ~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie 248 (332)
+-+.|||.+|++-.|.+- -|+.|..|=..+.+.|-.+.|. +|+.-+..|++-+-+-+|.
T Consensus 213 ~l~~~gg~lVivErGtp~-----------Gf~~I~rAR~~ll~~~~~~~e~--~~~ahiiAPCPH~~~CPl~ 271 (484)
T COG5459 213 NLLAPGGHLVIVERGTPA-----------GFERILRARQILLAPGNFPDEF--NYFAHIIAPCPHQRKCPLQ 271 (484)
T ss_pred HhccCCCeEEEEeCCCch-----------hHHHHHHHHHHHhcCCCCcccc--ccceeeeccCCCCCCCCcc
Confidence 456799999999877432 2788888888887877665443 4555566677666666655
No 219
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=40.04 E-value=30 Score=32.66 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=40.8
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCccc
Q 044174 28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFH 106 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy 106 (332)
-.+-+|+|+|||.|..+..+ .. .+.. ..+++.-| ++.....+.+.|-... ..-.......++
T Consensus 32 f~P~~vLD~GsGpGta~wAa-~~-------~~~~--------~~~~~~vd-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAA-RE-------VWPS--------LKEYTCVD-RSPEMLELAKRLLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred CCCceEEEecCChHHHHHHH-HH-------HhcC--------ceeeeeec-CCHHHHHHHHHHHhcccccccchhhhhhh
Confidence 34679999999998754332 22 2211 12344444 3444455444442211 000011123344
Q ss_pred cCCcCCCceeEEEecCccccc
Q 044174 107 HRLFPQSSIHFAHCSYALHWL 127 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWL 127 (332)
....+-..-|++.++++|-=|
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL 115 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNEL 115 (274)
T ss_pred cccccCCCCcEEEEehhhhcC
Confidence 333333333999999988643
No 220
>PF14904 FAM86: Family of unknown function
Probab=39.24 E-value=29 Score=28.01 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.9
Q ss_pred HHHHHHHHhhHHHhh--hCHHHHHHHHHHHHHH
Q 044174 277 TMHVRAAMEAMFSKH--FRIEIIDEMFNRLIRR 307 (332)
Q Consensus 277 a~~iRa~~epll~~h--fg~~i~delf~r~~~~ 307 (332)
..|.|.|...++..| .+.|+.|+||+.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 457899999999854 5889999999999875
No 221
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=38.20 E-value=39 Score=34.83 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=19.4
Q ss_pred CceEEEeecCCCCcchHHHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQDV 51 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~i 51 (332)
...+|+|.|||+|.-.+.++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~ 53 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKN 53 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHH
Confidence 56899999999999988876654
No 222
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=37.35 E-value=14 Score=23.83 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=8.6
Q ss_pred CcccCCHHHHHHHHH
Q 044174 234 PIYSASSEEMVKLVD 248 (332)
Q Consensus 234 P~y~ps~~E~~~~ie 248 (332)
|.|.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 778999999887764
No 223
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=35.94 E-value=36 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174 158 NAYASQFAKDMENFLNARAEEIVSGGM 184 (332)
Q Consensus 158 ~ay~~q~~~d~~~fL~~Ra~EL~pGG~ 184 (332)
+.+++-|..||..++..++..||.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 456778888999999999999998664
No 224
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=35.88 E-value=14 Score=29.57 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=9.3
Q ss_pred EeecCCCCcchHH
Q 044174 34 ADLGCAVGSNTIN 46 (332)
Q Consensus 34 aD~GCs~G~ns~~ 46 (332)
.|+||| |+||+.
T Consensus 7 IDIGcG-~GNTmd 18 (124)
T PF07101_consen 7 IDIGCG-AGNTMD 18 (124)
T ss_pred cccccC-CCcchh
Confidence 599999 667754
No 225
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=34.95 E-value=30 Score=33.25 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=18.7
Q ss_pred ceEEEeecCCCCcchHHHHHHH
Q 044174 30 IIRLADLGCAVGSNTINAMQDV 51 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~~~~i 51 (332)
..+++|.+||.|+-|..+++.+
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERL 41 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhC
Confidence 3589999999999999988653
No 226
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=33.90 E-value=87 Score=29.58 Aligned_cols=46 Identities=13% Similarity=0.350 Sum_probs=33.2
Q ss_pred HHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhccc
Q 044174 171 FLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSF 231 (332)
Q Consensus 171 fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f 231 (332)
.|..-++.|+|||.+++-.+. .+.+...+..|.+.|.++.+.....
T Consensus 177 ~le~~~~~Lkpgg~~~~y~P~---------------veQv~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 177 VLEHVSDALKPGGVVVVYSPT---------------VEQVEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred HHHHHHHHhCCCcEEEEEcCC---------------HHHHHHHHHHHHhcCccchhhheee
Confidence 566667899999999988755 3467777777777787766554433
No 227
>PRK05313 hypothetical protein; Provisional
Probab=32.86 E-value=2.1e+02 Score=29.21 Aligned_cols=90 Identities=16% Similarity=0.290 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC
Q 044174 11 IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL 90 (332)
Q Consensus 11 l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l 90 (332)
|-+.|.+.+..+.. ...+.+|+.==.|-=..+...+.++|..+.+.-..... ...--+.||.|+-|.|.|
T Consensus 130 lI~siPeaL~~t~~--v~ssVnv~st~~GInmdav~~~~~~Ik~~A~~t~~~~g-~g~ak~vVfaN~~~d~PF------- 199 (452)
T PRK05313 130 LIESIPEALASTER--VCSSVNVGSTKAGINMDAVKLMGEIIKETAELTKDRDG-IGCAKLVVFANAPEDNPF------- 199 (452)
T ss_pred HHHHHHHHHHhcCc--eeeEEEecccccCCCHHHHHHHHHHHHHHHHhCCCcCC-ccceeEEEEccCCCCCCC-------
Confidence 34445555444311 23344444322222233555566666666554321100 124569999999999987
Q ss_pred cccccceeeecCCccccCCcCCCceeEEEe
Q 044174 91 PQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120 (332)
Q Consensus 91 ~~~~~~f~~~vpgSFy~~lfP~~svd~~~S 120 (332)
.||+|++-==|+..+.++.|
T Consensus 200 ----------mpgA~Hg~ge~d~vinVGvS 219 (452)
T PRK05313 200 ----------MAGAFHGVGEPDAVINVGVS 219 (452)
T ss_pred ----------CCCccccCCCCCcEEEEeec
Confidence 67999976678888999999
No 228
>cd08025 RNR_PFL_like_DUF711 Uncharacterized proteins with similarity to Ribonucleotide reductase and Pyruvate formate lyase. This subfamily contains Streptococcus pneumoniae Sp0239 and similar uncharacterized proteins. Sp0239 is structurally similar to ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL), which are believed to have diverged from a common ancestor. RNR and PFL possess a ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. PFL is an essential enzyme in anaerobic bacteria that catalyzes the conversion of pyruvate and CoA to acteylCoA and formate.
Probab=32.29 E-value=1.8e+02 Score=29.29 Aligned_cols=87 Identities=17% Similarity=0.302 Sum_probs=51.8
Q ss_pred HHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc
Q 044174 12 VDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP 91 (332)
Q Consensus 12 ~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~ 91 (332)
-+.|.+.+..+.. ...+.+|+.==.|-=-.+...+.++|..+.+.-.. + ...--+.||.|+-|.|.|
T Consensus 127 I~sipeaL~~t~~--v~ssVnv~st~~GIn~dav~~~~~~Ik~~A~~t~~-g--~g~ar~~V~~N~~~d~PF-------- 193 (400)
T cd08025 127 IESIPEALASTER--VCSSVNVASTKAGINMDAVKLMGEIIKETAELTKD-G--IGCAKLVVFANAPEDNPF-------- 193 (400)
T ss_pred HHHHHHHHHhcCc--eeeEEeecccccCCCHHHHHHHHHHHHHHHhcCCC-c--ccceeEEEEccCCCCCCC--------
Confidence 3444444443311 23344444332222223555556666666543221 1 124579999999999987
Q ss_pred ccccceeeecCCccccCCcCCCceeEEEe
Q 044174 92 QQREYYSAGVPGSFHHRLFPQSSIHFAHC 120 (332)
Q Consensus 92 ~~~~~f~~~vpgSFy~~lfP~~svd~~~S 120 (332)
.||+|++-=-|+.-+.++.|
T Consensus 194 ---------mpgA~Hg~ge~d~~i~VGvs 213 (400)
T cd08025 194 ---------MAGAFHGVGEPDAVINVGVS 213 (400)
T ss_pred ---------CCCcccCCCCCCcEEEEcCC
Confidence 67999998888888999888
No 229
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=32.08 E-value=2.5e+02 Score=27.17 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCccc------CCHHHHHHHHHhCCceEEeEEE
Q 044174 186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS------ASSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~------ps~~E~~~~ie~~G~F~I~~le 259 (332)
...+.|..++--..+++.+.+-.+|.+++. -.-++-||. -|...+.+.|++.|.=.+...|
T Consensus 216 ~~~~~G~~~El~~~GGEv~FV~rMI~ES~~-------------~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e 282 (299)
T PF05971_consen 216 KLNFTGQSNELWCEGGEVAFVKRMIKESLQ-------------LKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTE 282 (299)
T ss_dssp -------TTTTHHHHTHHHHHHHHHHHHHH-------------HGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEE
T ss_pred cccCCCCcceEEcCCccHHHHHHHHHHHHH-------------hCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEE
Confidence 345667766654444455555455555443 112356775 5789999999988854444444
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=30.57 E-value=56 Score=29.83 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHH-------HHhhhhcCC-CCCCCceEEEecCCCCC
Q 044174 10 KIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVI-------KNKCHSQCP-SSKLPEFQVFFNDKTSN 81 (332)
Q Consensus 10 ~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i-------~~~~~~~~~-~~~~~~~~v~~nDlp~N 81 (332)
...+||.+..+ -+.+|||.|+|.-|+......-..+ +..|...+. -...-+++|.-.|.-.=
T Consensus 23 vF~~ai~~va~----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 23 VFTSAIAEVAE----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred HHHHHHHHHhh----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 44566766543 4689999999999998876522211 122222110 01234677777777777
Q ss_pred ch
Q 044174 82 DF 83 (332)
Q Consensus 82 DF 83 (332)
||
T Consensus 93 ~f 94 (252)
T COG4076 93 DF 94 (252)
T ss_pred cc
Confidence 77
No 231
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=30.36 E-value=63 Score=22.65 Aligned_cols=21 Identities=24% Similarity=0.063 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhccchhh
Q 044174 207 YDLMATIFMELANEQLITEAE 227 (332)
Q Consensus 207 ~~~l~~al~~mv~eGli~~e~ 227 (332)
=..|.++|.+|+.+|.|+++-
T Consensus 12 G~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 358999999999999998764
No 232
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=30.06 E-value=53 Score=23.97 Aligned_cols=30 Identities=33% Similarity=0.720 Sum_probs=24.0
Q ss_pred cccCcCcccCCHHHHHHHHH----hCCceEEeEEE
Q 044174 229 DSFNLPIYSASSEEMVKLVD----KNGHFSIKTVE 259 (332)
Q Consensus 229 d~fn~P~y~ps~~E~~~~ie----~~G~F~I~~le 259 (332)
.+|-.|.|..|++|-...-| ..| |.|.++.
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 36789999999998877766 457 9998875
No 233
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=29.00 E-value=44 Score=30.47 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=19.0
Q ss_pred CCCceEEEeecCCCCcchHHHHHH
Q 044174 27 ASNIIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 27 ~~~~~~iaD~GCs~G~ns~~~~~~ 50 (332)
..+.-+|+|+||+.|.=|..+++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHh
Confidence 355689999999999988766553
No 234
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=28.95 E-value=43 Score=34.25 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174 9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ 49 (332)
Q Consensus 9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~ 49 (332)
--|+.+|++..... ..+..-++|+|.|+|--|+.++.
T Consensus 50 ~gi~~tIte~kh~~----~~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 50 LGIEKTITEPKHVL----DIGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred HHHHHHhcccceec----cCceEEEEEccCCccHHHHHHHH
Confidence 34677777655433 46778999999999999988773
No 235
>PF05167 DUF711: Uncharacterised ACR (DUF711); InterPro: IPR007841 The proteins in this family are functionally uncharacterised. The proteins are around 450 amino acids long.; PDB: 2HA9_A.
Probab=27.97 E-value=1.4e+02 Score=30.06 Aligned_cols=91 Identities=16% Similarity=0.350 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174 8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF 87 (332)
Q Consensus 8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf 87 (332)
...+-+.|.+++..+. ....+..|++=--|-...++..+.++|..+.++-.. + ...--|.|++|..|.|.|
T Consensus 105 ~~~~i~~ip~~l~~t~--~v~~svnv~~~~~Gin~dav~~~~~~I~~la~~t~~-g--~g~~rf~v~~n~~~~~Pf---- 175 (399)
T PF05167_consen 105 DKALIESIPEALASTG--RVCSSVNVASTKAGINMDAVRRMAEIIKELAERTPD-G--EGNARFAVFANCPPDNPF---- 175 (399)
T ss_dssp HHHHHHHHHHHHHS-S--SEEEEEEEEETTTEEEHHHHHHHHHHHHHHHCT-S-----SCGGGEEEEES--TT--S----
T ss_pred cHHHHHHHHHHHHhcC--CeEEEEEecccccCCCHHHHHHHHHHHHHHHhcCcc-c--ccceeeEEEecCCCCCCc----
Confidence 3444455656655431 122345555422222344555555555555543210 0 123479999999998877
Q ss_pred hcCcccccceeeecCCccccCCcCCCceeEEEe
Q 044174 88 TSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120 (332)
Q Consensus 88 ~~l~~~~~~f~~~vpgSFy~~lfP~~svd~~~S 120 (332)
.|++||+.=-|+..+++++|
T Consensus 176 -------------fp~ayh~~g~~~~~~~vGvs 195 (399)
T PF05167_consen 176 -------------FPGAYHGVGEPDTVINVGVS 195 (399)
T ss_dssp --------------TT----TTS-SEEEEEEE-
T ss_pred -------------cccCcCCCCCCCceEEeecc
Confidence 57888877778889999999
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=27.09 E-value=1.4e+02 Score=27.09 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=27.5
Q ss_pred EEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc
Q 044174 33 LADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP 91 (332)
Q Consensus 33 iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~ 91 (332)
|||+||=+|.-.+.++++ ..--.++..|.-.+.+...-.++.
T Consensus 1 vaDIGtDHgyLpi~L~~~-----------------~~~~~~ia~DI~~gpL~~A~~~i~ 42 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-----------------GKAPKAIAVDINPGPLEKAKENIA 42 (205)
T ss_dssp EEEET-STTHHHHHHHHT-----------------TSEEEEEEEESSHHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHhc-----------------CCCCEEEEEeCCHHHHHHHHHHHH
Confidence 799999999998888631 123356666666666666555554
No 237
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=26.13 E-value=50 Score=20.56 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=14.6
Q ss_pred HHHHHHHHhhccchhhhc
Q 044174 212 TIFMELANEQLITEAELD 229 (332)
Q Consensus 212 ~al~~mv~eGli~~e~~d 229 (332)
..|.+|.+.|.|+++++.
T Consensus 6 ~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 457788899999998864
No 238
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=25.84 E-value=1.1e+02 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHh
Q 044174 206 MYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDK 249 (332)
Q Consensus 206 ~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~ 249 (332)
.|+-+-+-++.|+++|.++++..+ ...+..+++|+-+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 688888999999999999987765 45568899999888864
No 239
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=25.04 E-value=45 Score=22.55 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=13.6
Q ss_pred cCcccCCHHHHHHHHH
Q 044174 233 LPIYSASSEEMVKLVD 248 (332)
Q Consensus 233 ~P~y~ps~~E~~~~ie 248 (332)
+|.|.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999987764
No 240
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=24.46 E-value=90 Score=28.95 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHH
Q 044174 12 VDAITRNLNVCELSSASNIIRLADLGCAVGSNTINA 47 (332)
Q Consensus 12 ~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~ 47 (332)
++..++++.+....-..++.+++|+|.|.|--|...
T Consensus 95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m 130 (288)
T KOG3987|consen 95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRM 130 (288)
T ss_pred HHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhh
Confidence 344455555442222466799999999999888764
No 241
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.98 E-value=1.2e+02 Score=21.18 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174 156 VVNAYASQFAKDMENFLNARAEEIVSGG 183 (332)
Q Consensus 156 v~~ay~~q~~~d~~~fL~~Ra~EL~pGG 183 (332)
-.|.|.+.|++|-...|.+|.+-++..|
T Consensus 21 hmkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 21 HMKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 3578999999999999999999887644
No 242
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=23.79 E-value=1.3e+02 Score=27.65 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=17.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQDVL 52 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ii 52 (332)
.+++|+++|.|+|..+.-+++.+-
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~ 41 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLR 41 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHC
T ss_pred cCcEEEEECCCchHHHHHHHHHHH
Confidence 469999999999988777665443
No 243
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=22.49 E-value=1.3e+02 Score=26.73 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.9
Q ss_pred EEEeecCCCCcchHHH
Q 044174 32 RLADLGCAVGSNTINA 47 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~ 47 (332)
+++|+|+|-|-=.+.+
T Consensus 51 ~~lDiGSGaGfPGipL 66 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPL 66 (184)
T ss_dssp EEEEETSTTTTTHHHH
T ss_pred eEEecCCCCCChhHHH
Confidence 8999999999777665
No 244
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=21.96 E-value=67 Score=29.03 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.2
Q ss_pred CceEEEeecCCCCcchHHHHHH
Q 044174 29 NIIRLADLGCAVGSNTINAMQD 50 (332)
Q Consensus 29 ~~~~iaD~GCs~G~ns~~~~~~ 50 (332)
++-+|+++||+.|..|+.++..
T Consensus 45 ~~k~vLEIGt~~GySal~la~~ 66 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEA 66 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHh
Confidence 3579999999999999998753
No 245
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=21.58 E-value=1.2e+02 Score=22.01 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCC
Q 044174 205 VMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNG 251 (332)
Q Consensus 205 ~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G 251 (332)
-++++=.+.+...|..|.|++|..|.+. -..++...-.+++|
T Consensus 15 qm~e~kK~~idk~Ve~G~iTqeqAd~ik-----~~id~~~~~~~qnG 56 (59)
T PF10925_consen 15 QMLELKKQIIDKYVEAGVITQEQADAIK-----KHIDQRQEYMQQNG 56 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHcC
Confidence 3556667888999999999999987542 12444444555555
No 246
>COG2821 MltA Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]
Probab=21.53 E-value=75 Score=31.63 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=41.5
Q ss_pred cCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhc-ccCcCcccCCHHHHHHHHHhCCceEE
Q 044174 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELD-SFNLPIYSASSEEMVKLVDKNGHFSI 255 (332)
Q Consensus 181 pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d-~fn~P~y~ps~~E~~~~ie~~G~F~I 255 (332)
.|+++-+.+.|..+ ..|.-|... |+++|.|+.+++- .-..-|.--.++|+.++|++|-||--
T Consensus 203 dG~~~r~~YAgkng----------~py~sIGr~---Lid~Gei~~~~~SMq~Ir~W~~~np~rv~elL~~N~sfVF 265 (373)
T COG2821 203 DGRLNRFGYAGKNG----------HPYTSIGRL---LIDRGEIPKEEMSMQAIRDWFEANPQRVDELLEQNPSFVF 265 (373)
T ss_pred CCCEEEEEEcccCC----------CcchhHHHH---HHHcCCCCcccCCHHHHHHHHHHCHHHHHHHHhhCCceEE
Confidence 45555666666432 234455554 4588999988754 22345777889999999999988754
No 247
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=21.02 E-value=1.3e+02 Score=27.75 Aligned_cols=20 Identities=20% Similarity=-0.170 Sum_probs=16.0
Q ss_pred CCceEEEeecCCCCcchHHH
Q 044174 28 SNIIRLADLGCAVGSNTINA 47 (332)
Q Consensus 28 ~~~~~iaD~GCs~G~ns~~~ 47 (332)
....+|+|+=-|.|--|-.+
T Consensus 47 kpg~tVid~~PGgGy~TrI~ 66 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIF 66 (238)
T ss_pred CCCCEEEEEecCCccHhhhh
Confidence 44588999999999888654
No 248
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=20.68 E-value=1e+02 Score=30.56 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=59.8
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc-----cccceeeecCCccc
Q 044174 32 RLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ-----QREYYSAGVPGSFH 106 (332)
Q Consensus 32 ~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~-----~~~~f~~~vpgSFy 106 (332)
.+.|.||+.|+-+... +..+. +.. .|+-.|++...=...-. ...+.+ +-+-|-
T Consensus 113 ~~~~~~~g~~~~~~~i-----~~f~~-~~~--------------~Gl~~n~~e~~~~~~~~~~~~l~~k~~~--~~~~~~ 170 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYI-----AVFKK-AGV--------------VGLDNNAYEAFRANELAKKAYLDNKCNF--VVADFG 170 (364)
T ss_pred cccccCcCcCchhHHH-----HHhcc-CCc--------------cCCCcCHHHHHHHHHHHHHHHhhhhcce--ehhhhh
Confidence 7889999999977654 32222 111 23334444321111110 012223 778888
Q ss_pred cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV 186 (332)
Q Consensus 107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv 186 (332)
..+|+++++|++.+.-+...++. -.++|++++ +.++|||+.+
T Consensus 171 ~~~fedn~fd~v~~ld~~~~~~~--------------------------~~~~y~Ei~------------rv~kpGG~~i 212 (364)
T KOG1269|consen 171 KMPFEDNTFDGVRFLEVVCHAPD--------------------------LEKVYAEIY------------RVLKPGGLFI 212 (364)
T ss_pred cCCCCccccCcEEEEeecccCCc--------------------------HHHHHHHHh------------cccCCCceEE
Confidence 99999999999999655554322 233445544 5588999999
Q ss_pred EEeccc
Q 044174 187 IIMPGI 192 (332)
Q Consensus 187 l~~~gr 192 (332)
..-..+
T Consensus 213 ~~e~i~ 218 (364)
T KOG1269|consen 213 VKEWIK 218 (364)
T ss_pred eHHHHH
Confidence 876544
No 249
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=20.67 E-value=4.6e+02 Score=28.66 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccC---
Q 044174 156 VVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFN--- 232 (332)
Q Consensus 156 v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn--- 232 (332)
....|+.. |..+|.+|.--=.+.++|++ |+|-++.+ ......+|..|+++-.+ +++ =+-+.|
T Consensus 199 ~~aiyqAr----f~kYL~~RGl~~~~~~~v~a-fLGDgEmD------Epes~gAi~~A~re~Ld-Nli---fVincNlQr 263 (887)
T COG2609 199 IQAIYQAR----FLKYLEARGLKDTSDQKVWA-FLGDGEMD------EPESRGAITEAAREKLD-NLI---FVINCNLQR 263 (887)
T ss_pred HHHHHHHH----HHHHHHhcCCcCCCCCeEEE-EecCcccC------CchhhHHHHHHHHhcCC-ceE---EEEecchhh
Confidence 44556654 45677777655556777665 55655443 23345677777652111 111 011112
Q ss_pred --cCcccC--CHHHHHHHHHhCCceEEeEEE
Q 044174 233 --LPIYSA--SSEEMVKLVDKNGHFSIKTVE 259 (332)
Q Consensus 233 --~P~y~p--s~~E~~~~ie~~G~F~I~~le 259 (332)
-|.--- =..|+..+++..| |.|.++-
T Consensus 264 LDgpVrgngkiiqelE~~FrgAG-W~Vikvi 293 (887)
T COG2609 264 LDGPVRGNGKIIQELEGIFRGAG-WNVIKVI 293 (887)
T ss_pred cCCcccCCchhHHHHHHHhccCC-ceEEEEE
Confidence 233223 4789999999999 9998876
No 250
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=20.65 E-value=1.2e+02 Score=26.62 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccchhhhcccC---cCcccCCHHHHHHHHH
Q 044174 203 NGVMYDLMATIFMELANEQLITEAELDSFN---LPIYSASSEEMVKLVD 248 (332)
Q Consensus 203 ~~~~~~~l~~al~~mv~eGli~~e~~d~fn---~P~y~ps~~E~~~~ie 248 (332)
.|.....+..+..|.|.||+|++++.++.- .=|..|..++.+.+.+
T Consensus 76 fGpaQaavA~AVaD~V~eG~iP~~~a~dl~Iiv~Vfi~p~a~D~~kiy~ 124 (159)
T PF08714_consen 76 FGPAQAAVAKAVADAVEEGIIPKDEADDLVIIVSVFIHPDALDDKKIYR 124 (159)
T ss_dssp CTHHHHHHHHHHHHHHHTTSS-TTTGGGEEEEEEEE--TT---HHHHHH
T ss_pred cCHHHHHHHHHHHHHHHcCCCChhhcCcEEEEEEEEeCccccCHHHHHH
Confidence 344456788999999999999999888642 2244455555544443
No 251
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=20.62 E-value=50 Score=31.60 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.3
Q ss_pred ceEEEeecCCCCcchHHH
Q 044174 30 IIRLADLGCAVGSNTINA 47 (332)
Q Consensus 30 ~~~iaD~GCs~G~ns~~~ 47 (332)
--+|+||||++|--.+..
T Consensus 117 ~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFA 134 (282)
T ss_pred CceeEecCCcccccchhh
Confidence 358999999998766654
No 252
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=20.32 E-value=1e+02 Score=26.93 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhhccc
Q 044174 204 GVMYDLMATIFMELANEQLITEAELDSF 231 (332)
Q Consensus 204 ~~~~~~l~~al~~mv~eGli~~e~~d~f 231 (332)
|.....+..+..|.|.||+|++++.|+.
T Consensus 79 GpaQ~avA~AVaD~V~eG~iP~~~addl 106 (160)
T TIGR03126 79 GPAQAAVAKAVADSVEEGIIPKDEADDL 106 (160)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhhCcE
Confidence 3444678889999999999999988764
Done!