Query 044175
Match_columns 537
No_of_seqs 199 out of 2129
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 4.1E-30 1.4E-34 271.0 29.7 443 8-535 6-473 (491)
2 2xut_A Proton/peptide symporte 100.0 5.2E-30 1.8E-34 272.5 24.5 470 11-536 8-505 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 4.5E-25 1.5E-29 229.4 25.3 399 14-533 27-433 (451)
4 3o7q_A L-fucose-proton symport 99.9 8E-24 2.8E-28 219.2 31.5 359 12-491 23-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 3.9E-23 1.3E-27 217.5 20.8 155 49-211 53-215 (491)
6 2gfp_A EMRD, multidrug resista 99.9 1.8E-22 6.1E-27 204.8 16.5 166 18-210 3-168 (375)
7 2cfq_A Lactose permease; trans 99.8 2.9E-21 9.9E-26 199.2 8.8 388 15-535 7-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 8.6E-13 3E-17 136.4 15.0 177 15-215 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 4.1E-11 1.4E-15 123.3 17.8 168 15-211 258-427 (438)
10 2cfq_A Lactose permease; trans 99.2 2.1E-11 7E-16 125.2 11.6 174 16-215 221-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 9E-11 3.1E-15 122.9 11.7 186 16-219 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 1.1E-08 3.7E-13 106.9 18.4 182 16-219 277-465 (491)
13 2gfp_A EMRD, multidrug resista 98.7 1.8E-09 6.2E-14 108.7 1.5 162 15-203 199-363 (375)
14 2xut_A Proton/peptide symporte 98.0 1.6E-06 5.5E-11 91.2 3.4 149 53-218 337-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=4.1e-30 Score=270.96 Aligned_cols=443 Identities=17% Similarity=0.235 Sum_probs=294.5
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhh-ccch
Q 044175 8 IKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNE-----MHFNLAGASNTLTNLMGSTFLLCLVGGFISDT-FLSR 81 (537)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Gr 81 (537)
+..++++|.++.+.+..+++++++|++.++++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + ||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~ 84 (491)
T 4aps_A 6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GA 84 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CH
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc
Confidence 34566888999999999999999999999999999988 99999999999999999999999999999999 7 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhh
Q 044175 82 FATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGA 161 (537)
Q Consensus 82 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 161 (537)
|+++.++.++..++.+++.++. +...++++|+++|++.|...+...++++|++|+++.+
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (491)
T 4aps_A 85 RPAVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH--
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc--
Confidence 9999999999999998888753 6778999999999999999999999999999977632
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccccccc---CCCC-CchhhHHHHH
Q 044175 162 KALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQ---QPGE-SPLVRVSQVV 237 (537)
Q Consensus 162 ~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~v~~~~ 237 (537)
|++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++..++ ++++ ...++..+..
T Consensus 144 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 144 --RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred --ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 777888888999999999999999999889999999998776666655554443332211 1111 1111111100
Q ss_pred HH--------------HHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhH
Q 044175 238 VV--------------AIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQV 303 (537)
Q Consensus 238 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
+. .....+. ..++........... ....+..+ . |+... ...
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~-~-----------~~~~~-~~~ 276 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVGWN-SLPAYINLLTIVAIA-----------IPVFYFAW-M-----------ISSVK-VTS 276 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHSSC-CTTHHHHHHHHHHHH-----------HHHHHHHH-H-----------C--------
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-ccccchhhhhHHHHH-----------HHHHHHHH-H-----------hhccc-ccH
Confidence 00 0001100 000000000000000 00000000 0 00000 000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhcchhhheecc-ccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccC
Q 044175 304 EEVKILTRMMPILASTILMNTCLAQLQTFSVTQGA-YMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITG 382 (537)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~ 382 (537)
.++++..+...++.....++..+.+..+....+.. ..+.. ....+.......+..++..++.+++.+++.||.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~-- 350 (491)
T 4aps_A 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ-- 350 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC--
Confidence 12233333445555555556665555443222211 11211 234556677777888888888888766655442
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchh
Q 044175 383 HPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMR 462 (537)
Q Consensus 383 ~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 462 (537)
......+..|.++.++++.+........ ... .+.+.+++++.+++.+++++...+..++++.|.+|++.|
T Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 351 ----PSSPTKFAVGLMFAGLSFLLMAIPGALY---GTS---GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp ------CHHHHHHHHHHHHHHHTTTHHHHHHC---CCC---TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHHHHhc---CCC---CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 2456677788888888877766543220 000 124566777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 463 TLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 463 g~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
++++|+.+...++|..+++.+.+.+.+ .++...|++.++++++..++.+++.+
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA--------------------KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG--------------------SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888765431 22345677777777777666655543
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=5.2e-30 Score=272.53 Aligned_cols=470 Identities=17% Similarity=0.282 Sum_probs=288.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc-chhH
Q 044175 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMH------FNLAGASNTLTNLMGSTFLLCLVGGFISDTFL-SRFA 83 (537)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~ 83 (537)
++++|.++.+.+..++.++++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 4567788889999999999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhh
Q 044175 84 TCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKA 163 (537)
Q Consensus 84 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 163 (537)
++.++.++..++.+++.++. .+...++++|+++|++.|...+...++++|++|+++ |..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~ 145 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSL 145 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTH
T ss_pred HHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHH
Confidence 99999999999998888762 157788999999999999999999999999999877 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHh
Q 044175 164 LASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKN 243 (537)
Q Consensus 164 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 243 (537)
+...+++.+.+.++|..++|.+++++.+..||++.|++.++..++..+.++..+++.++++|++++..+..+.+....++
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhh
Confidence 34556668889999999999999999888899999998887766666555544444333333222222211111111111
Q ss_pred ccCCCCCChhhhhhhhhh-----hccCCccccC--------------CCCchhH--hhhhccCCCCCCCCCCcccccchh
Q 044175 244 RKLSLPENPEELYEINEK-----ERVGTEERIP--------------HTNQFRC--LDKAAIVPKDSTEAAPWRVCTLTQ 302 (537)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 302 (537)
++.+ ++......+.... ..... +... ...+..+ +++.+.. +..++
T Consensus 226 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 291 (524)
T 2xut_A 226 KVEG-KGNIGLVLALIGGVSAAYALVNI-PTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS------------HPDAA 291 (524)
T ss_dssp -CTT-HHHHHHHHHHHHHHHHHHTGGGT-TTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCS------------CCSSS
T ss_pred hhcc-cCccchhhhhhhhhhhhhhhccc-chhhhhhhhhhhhhhhhcccccchhhHHhhhhcc------------ccHhH
Confidence 1100 0000000000000 00000 0000 0000011 1111000 00001
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccC
Q 044175 303 VEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITG 382 (537)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~ 382 (537)
.++.++......++.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 122333434444444444555555555554444333333220 0 2334555667777888888888876555555432
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchh
Q 044175 383 HPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMR 462 (537)
Q Consensus 383 ~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 462 (537)
+ .+..+.+.+|+++.+++++.....+... .++ .+.+.+++++.+++.+++++...+..++++.+.+|++.|
T Consensus 369 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 369 K---LTALRKMGAGIAITGLSWIVVGTIQLMM-----DGG-SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp -----CCHHHHHTHHHHHHHHHHTTTTTTTTT-----TTT-CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred C---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----cCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 2 3556677788888888877655431100 000 123556677789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 463 TLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 463 g~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
|+++|+.++..++|+.+++.+.+.+.+.+.. +|...... +.....|++.+++++++.++++++.++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVT------EQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH------HHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccc------cccccccc--cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876632211 12110000 011223777788888887777666544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=4.5e-25 Score=229.37 Aligned_cols=399 Identities=9% Similarity=-0.063 Sum_probs=245.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
++.++.+.+..+...+..+...+.++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 3455556666666666655555555544 4567 9999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHH----HhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 94 LALVMITV----QAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 94 i~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
++.+++++ +. +...++++|+++|++.|...+...++++|.+|+++ |+++++
T Consensus 104 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 158 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS 158 (451)
T ss_dssp HHHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred HHHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence 99999888 53 66789999999999999999999999999999777 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCC
Q 044175 170 YFLLTTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSL 248 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 248 (537)
+...+.++|..++|.+++++.+..| ||+.|++.++..++..+..++..++.++....++. + + .
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~--~ 222 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------E--Y 222 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------T--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------h--h
Confidence 9999999999999999999888888 99999988776655544443333321111100000 0 0 0
Q ss_pred CCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHH-HHHHHHHHHhhh
Q 044175 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPI-LASTILMNTCLA 327 (537)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 327 (537)
.++. +.+ . + ++.. ++..++....++....+.+...... ......+... .
T Consensus 223 ~~~~----~~~-~--~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 272 (451)
T 1pw4_A 223 KNDY----PDD-Y--N---EKAE-------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI-L 272 (451)
T ss_dssp CCC------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccc----ccc-c--h---hhhh-------------------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHH-H
Confidence 0000 000 0 0 0000 0000000000000001111111111 1111111111 1
Q ss_pred hcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHH-HHHHH
Q 044175 328 QLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSA-VSMTI 406 (537)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~-~~~~~ 406 (537)
.+.+.+..+..+.+ ....+.+.....+..++..++..++.+++.+ ++.+.+.++..+.. ++++.
T Consensus 273 ~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 337 (451)
T 1pw4_A 273 DWSPTYLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIV 337 (451)
T ss_dssp HHHHHHBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHH
Confidence 11121211111111 1111223334445555555555554433200 12233444444433 45444
Q ss_pred HHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHH-HHHHHHHHHH
Q 044175 407 AGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSF-GNFLSSVFVD 485 (537)
Q Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~~~~~l~~ 485 (537)
..... ..+.+.+....++.|++.....+..+.+..+.+|++.|+++.|+.+....+ |..+++.+.+
T Consensus 338 ~~~~~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 338 YWMNP-------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp TTSCC-------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33310 124455566677778877788888889999999999999999999999999 9999999988
Q ss_pred HhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 044175 486 IINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYA 533 (537)
Q Consensus 486 ~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~ 533 (537)
.+.+. .++...|++.+++.+++.++.+..
T Consensus 405 ~l~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 405 YTVDF-------------------FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHS-------------------SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 76532 124556777777777777665554
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=8e-24 Score=219.15 Aligned_cols=359 Identities=11% Similarity=0.030 Sum_probs=227.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
++++.+..+.+..++..+.++...+.+ +++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 345566666666666666665444444 457788999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+++.+++..... .++.+.++++|+++|++.|...+...++++|.+|+++ |++.+++.
T Consensus 101 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 158 (438)
T 3o7q_A 101 YALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLA 158 (438)
T ss_dssp HHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHH
T ss_pred HHHHHHHHHhccc----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHH
Confidence 9999988833211 1378899999999999999999999999999999888 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhc-cccc-------------------------chHHHHHHHHHHHHHHHHHHhccccccccCC
Q 044175 172 LLTTTLAAVIGVTAIVYVS-TEKA-------------------------WWGGFLISSIVTFIGFIALVIGKPFYRNQQP 225 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 225 (537)
..+.++|..++|.+++++. +..+ |++.|++.+....+..+..+..+. ++.++
T Consensus 159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~ 236 (438)
T 3o7q_A 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccc
Confidence 9999999999999999987 5544 899987766554444443333211 11100
Q ss_pred CCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHH
Q 044175 226 GESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEE 305 (537)
Q Consensus 226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
++++ ++ ++ .....++.+. -.
T Consensus 237 ~~~~--------------------~~----------------~~--~~~~~~~~~~----------------------~~ 256 (438)
T 3o7q_A 237 DNHS--------------------DA----------------KQ--GSFSASLSRL----------------------AR 256 (438)
T ss_dssp TCCC--------------------CS----------------ST--TSHHHHHHHH----------------------TT
T ss_pred cccc--------------------cc----------------cc--cchhhhHHHH----------------------Hh
Confidence 0000 00 00 0000000000 00
Q ss_pred HHHHHhH-HHHHHHHHHHHHhhhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCC
Q 044175 306 VKILTRM-MPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHP 384 (537)
Q Consensus 306 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~ 384 (537)
.+.+... +..............+.+..+..+..+.+. ...+.......+..++..++..++.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~~r~-------- 322 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGTWLISRF-------- 322 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 0111111 111111111111111111210211111111 1112223333444455555555544333
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHH
Q 044175 385 SGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTL 464 (537)
Q Consensus 385 ~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 464 (537)
++.+.+..+.++.+++.+..... +..+.....++.+++.....|..+++..+..|++ ++.
T Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 323 ---APHKVLAAYALIAMALCLISAFA----------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 33345566666666666555442 1122333457778888888899999999999977 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044175 465 STSFTFLSLSFGNFLSSVFVDIINAVT 491 (537)
Q Consensus 465 ~~g~~~~~~~~g~~~~~~l~~~i~~~~ 491 (537)
+.++.. .+.++..+++.+.+.+.+..
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999877 67799999999998877544
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.90 E-value=3.9e-23 Score=217.49 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=114.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHH
Q 044175 49 NLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFY 128 (537)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (537)
+..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++........+.. .....-..+...++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-TVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-SCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-HHHHHHhhhHHHHH
Confidence 345668899999999999999999999995 9999999999999999999885321000000000 00000013778999
Q ss_pred HHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc--------ccchHHHH
Q 044175 129 ASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE--------KAWWGGFL 200 (537)
Q Consensus 129 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~--------~g~~~~f~ 200 (537)
++|+++|+|.|+..+..+.+++|..|+++ |++..++...+..+|..+++.++..+... .+||..+.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 99999999999999999999999999877 88999988888889988888777655432 34666666
Q ss_pred HHHHHHHHHHH
Q 044175 201 ISSIVTFIGFI 211 (537)
Q Consensus 201 i~~~~~~~~~~ 211 (537)
+..+..++..+
T Consensus 205 ~~~~~~~~~~~ 215 (491)
T 4gc0_A 205 SECIPALLFLM 215 (491)
T ss_dssp TTHHHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 55554443333
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=1.8e-22 Score=204.85 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 97 (537)
..+....++..+......+.++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566666667666666666654 578999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH
Q 044175 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177 (537)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (537)
++..+. +...+++.|+++|++.+...+...+++.|.+|+++ |++.++......++
T Consensus 81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 888874 67889999999999999999999999999999877 89999999999999
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Q 044175 178 AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 178 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 210 (537)
|..++|.+++++.+..+|+..|++.++..++..
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999999999999988899999987766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.83 E-value=2.9e-21 Score=199.15 Aligned_cols=388 Identities=10% Similarity=0.006 Sum_probs=213.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|..+.+....++..+++....++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ ||||++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666777777777788999999999999999999999999999999999999999995 999999999887655
Q ss_pred HHHHH---HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 95 ALVMI---TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 95 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
+.... ..... ....+..++++.+++.|...+...+...+..++.. ++++..++..
T Consensus 86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~ 143 (417)
T 2cfq_A 86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRA 143 (417)
T ss_dssp CHHHHHHHTHHHH------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHH
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHH
Confidence 33211 11110 00012334555555555444444444444332111 1245556666
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCC
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPEN 251 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (537)
....++|..++|.+++++.+ .+|+..|++.++..++..+..+..+++ ++++.+ .++.
T Consensus 144 ~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~~ 200 (417)
T 2cfq_A 144 RMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VANA 200 (417)
T ss_dssp SSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------cccc
Confidence 66778999999999998876 589998887655433332222221111 110000 0000
Q ss_pred hhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcch
Q 044175 252 PEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQT 331 (537)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 331 (537)
+ + ++....+..++.+ .+ . .+.+.............+..+.+..+
T Consensus 201 ---------~--~---~~~~~~~~~~~~~----------------~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (417)
T 2cfq_A 201 ---------V--G---ANHSAFSLKLALE----------------LF-----R-QPKLWFLSLYVIGVSCTYDVFDQQFA 244 (417)
T ss_dssp ---------S--S---SCCCCCCHHHHHH----------------HT-----T-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------c--c---cccccccHHHHHH----------------Hh-----c-CCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000000000000 00 0 01111111111111111122222222
Q ss_pred hhheeccccCCCCCccccCC---CcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 044175 332 FSVTQGAYMDPQLGSIKVPT---PSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAG 408 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~ 408 (537)
.+... ..+.. .... +....++.+..++...+..++.|++. +.+.+..+.++.++++...+
T Consensus 245 ~~~~~--~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----------~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 245 NFFTS--FFATG----EQGTRVFGYVTTMGELLNASIMFFAPLIINRIG-----------GKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHH--TSSSH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH--HHhcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------HHHHHHHHHHHHHHHHHHHH
Confidence 11111 01100 0001 11222333333444444455444332 33445566666666654443
Q ss_pred HHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 044175 409 FVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSF-TFLSLSFGNFLSSVFVDII 487 (537)
Q Consensus 409 ~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~~~~~l~~~i 487 (537)
.. .+.+.++....+.+++.....+..+.++.|.+|++.||++.++ ++..+++|+.+++.+.+.+
T Consensus 308 ~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 308 FA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp TC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred Hh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 31 1233444445556666666667778899999999999999998 4888889999999988865
Q ss_pred hhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 488 NAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 488 ~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.+. .++...|.+.+++++++.++.+.+.+
T Consensus 373 ~~~-------------------~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 373 YES-------------------IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHH-------------------SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHh-------------------cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 421 23455677888888877776655444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=8.6e-13 Score=136.45 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=149.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc--chhHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFL--SRFATCLIFGTLE 92 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Gr~~~~~~~~~~~ 92 (537)
|.++.+.+..++..++++++..+.+.|+++.+|++..+.+.+.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 567788888888999999999999999998899999999999999999999999999999999 8 9999988887766
Q ss_pred H-HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 93 V-LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 93 ~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
. ++.+++.... ..+...+.+..++.|++.+...+....++.|.+|+++ |++++++.
T Consensus 331 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 387 (451)
T 1pw4_A 331 VTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 387 (451)
T ss_dssp HHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence 6 5555444331 1245667777788999988888888899999999877 89999999
Q ss_pred HHHHHH-HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 172 LLTTTL-AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 172 ~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
+...++ |..++|.+.+++.+..||+..|++.+++.+++.+..+.
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999899999998877766666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=4.1e-11 Score=123.30 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLY-FKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
|.++...+..++....+++...+++.| +++.+|++..+.+...+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456777777788888888888999999 8888899999999999999999999999999999995 99999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++.++..... +.. ..+..++.|++.+...|...++..|.+|++ ++.+.++..
T Consensus 337 ~~~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 388 (438)
T 3o7q_A 337 ALCLISAFAG-------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHCC-------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred HHHHHHHHcC-------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence 8877766652 333 334457888999999999999989988843 344444443
Q ss_pred HHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFI 211 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~ 211 (537)
...+|..++|.+.|++.+..| ++..|.+.++..++..+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 556999999999999999888 99998876655444333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=2.1e-11 Score=125.25 Aligned_cols=174 Identities=10% Similarity=-0.022 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---chhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHF---NLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
..+...+..+.....++.....++.|+++.++. +..+.+...+...+...++.+++|+++||+ |||+++..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 344444444444445555556678888766653 234456667777778888999999999995 9999999888887
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH-
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF- 171 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~- 171 (537)
+++.++.... .+...+++..++.+++.+...+....+++|.+|++. |++..+..
T Consensus 300 ~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 354 (417)
T 2cfq_A 300 SVRIIGSSFA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCF 354 (417)
T ss_dssp HHHHHHHTTC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence 7776555443 244556666667777766666667889999999765 88888874
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
..+..+|+.++|.++|++.+..|++..|.+.+++.+++.+..+.
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 56677999999999999988888888888777766666555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.17 E-value=9e-11 Score=122.86 Aligned_cols=186 Identities=8% Similarity=-0.025 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHH-----HHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCL-----IFGT 90 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-----~~~~ 90 (537)
..+.+.+..++....++.....++.|+++.++.+..+.+.+.+...+...++.++.|+++||+ |||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 455566666677777777788889999988888877888888888999999999999999995 9987655 6777
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 91 LEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
+..++.+++........-. ...+...+.+..++.|++.+...+...+++.|.+|++. |+++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTS----------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCC----------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHHhcCCC----------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 7777766655542110000 01255667778889999999999999999999999888 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccc
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPF 219 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 219 (537)
.+...++|..++|.+.+++.+. ++...|.+.+...++..+..+...++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 66667776666555555555444433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.99 E-value=1.1e-08 Score=106.87 Aligned_cols=182 Identities=9% Similarity=-0.076 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.........++..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 333344444444444333444444555567788888887777788889999999999999995 9999999999888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhH-HHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAA-YFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
.+.+....... ..... ...+..+..+.+. ...|....+.+|.+|.+. |+++.++....
T Consensus 356 ~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 356 MFSLGTAFYTQ--------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHTT--------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHhcc--------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 77666543211 11222 2222222222332 234666788999999988 99999998888
Q ss_pred HHHHHHHHHHHHhhhcc------cccchHHHHHHHHHHHHHHHHHHhcccc
Q 044175 175 TTLAAVIGVTAIVYVST------EKAWWGGFLISSIVTFIGFIALVIGKPF 219 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 219 (537)
..+++.+++.+.+.+.+ ..++...|++.+.+.+++.+..++..||
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 88998888877766543 2345556776666666665555554444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.74 E-value=1.8e-09 Score=108.67 Aligned_cols=162 Identities=9% Similarity=-0.045 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH-HH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL-EV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~-~~ 93 (537)
|.++...+..++...++++...+.+.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3566777777888888888888889999888999999999999999999999999999999995 883 2333333 22
Q ss_pred HHHH--HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 94 LALV--MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 94 i~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+.. ...... ..+.+.+++..++.|++.+...+...++..|..| ++ |++..+..
T Consensus 276 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~ 331 (375)
T 2gfp_A 276 AGLLMWIPDWFG-----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALV 331 (375)
T ss_dssp TSSSSSHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHH
T ss_pred HHHHHHHHhhhc-----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHH
Confidence 2222 122211 0145566677888999999999999999999887 44 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISS 203 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~ 203 (537)
....++|..++|.+.+.+.+..+++..+.+.+
T Consensus 332 ~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 332 GGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 98999999999999998877777777766533
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.04 E-value=1.6e-06 Score=91.16 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHh----hhccch----hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchh
Q 044175 53 ASNTLTNLMGSTFLLCLVGGFIS----DTFLSR----FATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIA 124 (537)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~G~la----D~~~Gr----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (537)
.+.+.....+...+..++.+++. ||. || ++.+.++.++..++.+++........ + +...+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~---~~~~~~ 405 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD-------G---GSALSI 405 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-------T---TCCCCS
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-------C---CCCcCH
Confidence 44444444455566666666654 453 43 24566777777777665554320000 0 001245
Q ss_pred HHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc--cc-------
Q 044175 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK--AW------- 195 (537)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--g~------- 195 (537)
.++.+..++.|++.+...+...+++.|..|++. |++++++.+...++|..++|.+.+.+.+.. +|
T Consensus 406 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~ 479 (524)
T 2xut_A 406 FWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS 479 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 667778889999999999999999999999888 899999999999999999999999887642 23
Q ss_pred --hHHHHHHHHHHHHHHHHHHhccc
Q 044175 196 --WGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 196 --~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
+..|++.+.+.+++.+..+...+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 480 VTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555544444333
Done!