BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044176
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 165/383 (43%), Gaps = 71/383 (18%)
Query: 1 LSNNRIRGRISKSDSQRWKSLTYLDIS-NNF----LTQIEQHPWKNITVLNLQNNTIQGT 55
LS N G + +S + SL LD+S NNF L + Q+P + L LQNN G
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 56 ILVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTIL 115
I PP+ SN N LSGTIP LG+ S +L L
Sbjct: 410 I---PPT-----LSN-------------CSELVSLHLSFNYLSGTIPSSLGSLS-KLRDL 447
Query: 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
L N L+G IP L +L L+ N L G P L++CT L +++ NN +
Sbjct: 448 KLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLP---- 226
P W+G L L IL L +N F G +P E +L +DL+ N F G +P
Sbjct: 507 PKWIGRLENLAILKLSNNSFSG-------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 227 --------------RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
R++++ + MK + L QG + ++ + +
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN--RLSTRNPCNITS 617
Query: 273 RIITIFTT-----------IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
R+ T+ +D+S N G IP+ +G L +LNL HN ++GSIP
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 322 NMIVLESLDLSSNKLHGRIPEQF 344
++ L LDLSSNKL GRIP+
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAM 700
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 46/270 (17%)
Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
+L L ++ N + G D + +L L ++SN P +L DC+ L+ +++ N
Sbjct: 179 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234
Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
+ F + + LK+L + SN+F GP+ LP ++L+ + L+ N+FTG +P ++
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK-------GRDLVLKRIITI--FTTI 281
+ +T+ +D G+ + ++ + +L + ++ + +
Sbjct: 291 GACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 282 DLSSNQFQGEIPQVLGDF-KSLIVLNLS--------------------------HNGLTG 314
DLS N+F GE+P+ L + SL+ L+LS +NG TG
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 315 SIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
IP + +N L SL LS N L G IP
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 150/401 (37%), Gaps = 77/401 (19%)
Query: 1 LSNNRIRGRISKSDSQRWKSLTYLDIS-NNFLTQIEQHPWKNITVLNLQNNTIQGTILVP 59
+S N+I G + D R +L +LD+S NNF T I L
Sbjct: 185 ISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIP--------------------FLGD 221
Query: 60 PPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNN 119
+ + S NKL G N G IPP L L L
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAE 278
Query: 120 NYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSFPRY------------------------ 154
N G IPD F +G+CD L L L+ N G+ P +
Sbjct: 279 NKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 155 -LADCTGLEVVNVGNNMIGDTFPSWLGSLPG-LKILVLRSNRFYGPLCEVNIMLPFEALR 212
L GL+V+++ N P L +L L L L SN F GP+ P L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 213 IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVL- 271
+ L +N FTG +P T+ N E S L S+ K RDL L
Sbjct: 398 ELYLQNNGFTGKIP-------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 272 ---------KRIITIFT--TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF 320
+ ++ + T T+ L N GEIP L + +L ++LS+N LTG IP
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 321 ANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361
+ L L LS+N G IP + D C S DL TN
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGD---CRSLIWLDLNTN 548
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT---QIEQHPWKNITVLNLQNNTIQGTIL 57
LSNNR+ G I K R ++L L +SNN + E +++ L+L N GTI
Sbjct: 497 LSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI- 554
Query: 58 VPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHL 117
A + K+ + +G + G S QL L
Sbjct: 555 -----PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 118 NN------NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
N G F N + L ++ N L G P+ + L ++N+G+N I
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPR 227
+ P +G L GL IL L SN+ G + + M L IDLS+N +G +P
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQA--MSALTMLTEIDLSNNNLSGPIPE 722
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 22/164 (13%)
Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF-LPRWIFVSLETMK 237
LGS GLK L + SN P +V+ L +L ++DLS N +G + W+
Sbjct: 122 LGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVL------- 173
Query: 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297
SDG GE + +++ D+ + R + + +D+SSN F IP LG
Sbjct: 174 ------SDGC---GELKHL--AISGNKISGDVDVSRCVNL-EFLDVSSNNFSTGIP-FLG 220
Query: 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
D +L L++S N L+G + + L+ L++SSN+ G IP
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 167/383 (43%), Gaps = 71/383 (18%)
Query: 1 LSNNRIRGRISKSDSQRWKSLTYLDIS-NNF----LTQIEQHPWKNITVLNLQNNTIQGT 55
LS N G + +S + SL LD+S NNF L + Q+P + L LQNN G
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 56 ILVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTIL 115
I P S + L S + F N LSGTIP LG+ S +L L
Sbjct: 407 I-PPTLSNCSELVSLHLSF--------------------NYLSGTIPSSLGSLS-KLRDL 444
Query: 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
L N L+G IP L +L L+ N L G P L++CT L +++ NN +
Sbjct: 445 KLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLP---- 226
P W+G L L IL L +N F G +P E +L +DL+ N F G +P
Sbjct: 504 PKWIGRLENLAILKLSNNSFSG-------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 227 --------------RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
R++++ + MK + L QG + ++ + +
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN--RLSTRNPCNITS 614
Query: 273 RIITIFTT-----------IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
R+ T+ +D+S N G IP+ +G L +LNL HN ++GSIP
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 322 NMIVLESLDLSSNKLHGRIPEQF 344
++ L LDLSSNKL GRIP+
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAM 697
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 46/270 (17%)
Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
+L L ++ N + G D + +L L ++SN P +L DC+ L+ +++ N
Sbjct: 176 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 231
Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
+ F + + LK+L + SN+F GP+ LP ++L+ + L+ N+FTG +P ++
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK-------GRDLVLKRIITI--FTTI 281
+ +T+ +D G+ + ++ + +L + ++ + +
Sbjct: 288 GACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 282 DLSSNQFQGEIPQVLGDFK-SLIVLNLS--------------------------HNGLTG 314
DLS N+F GE+P+ L + SL+ L+LS +NG TG
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 315 SIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
IP + +N L SL LS N L G IP
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 150/401 (37%), Gaps = 77/401 (19%)
Query: 1 LSNNRIRGRISKSDSQRWKSLTYLDIS-NNFLTQIEQHPWKNITVLNLQNNTIQGTILVP 59
+S N+I G + D R +L +LD+S NNF T I L
Sbjct: 182 ISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIP--------------------FLGD 218
Query: 60 PPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNN 119
+ + S NKL G N G IPP L L L
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAE 275
Query: 120 NYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSFPRY------------------------ 154
N G IPD F +G+CD L L L+ N G+ P +
Sbjct: 276 NKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 155 -LADCTGLEVVNVGNNMIGDTFPSWLGSLPG-LKILVLRSNRFYGPLCEVNIMLPFEALR 212
L GL+V+++ N P L +L L L L SN F GP+ P L+
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 213 IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVL- 271
+ L +N FTG +P T+ N E S L S+ K RDL L
Sbjct: 395 ELYLQNNGFTGKIP-------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 272 ---------KRIITIFT--TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF 320
+ ++ + T T+ L N GEIP L + +L ++LS+N LTG IP
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 321 ANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361
+ L L LS+N G IP + D C S DL TN
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGD---CRSLIWLDLNTN 545
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT---QIEQHPWKNITVLNLQNNTIQGTIL 57
LSNNR+ G I K R ++L L +SNN + E +++ L+L N GTI
Sbjct: 494 LSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI- 551
Query: 58 VPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHL 117
A + K+ + +G + G S QL L
Sbjct: 552 -----PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 118 NN------NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
N G F N + L ++ N L G P+ + L ++N+G+N I
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPR 227
+ P +G L GL IL L SN+ G + + M L IDLS+N +G +P
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQA--MSALTMLTEIDLSNNNLSGPIPE 719
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 22/164 (13%)
Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF-LPRWIFVSLETMK 237
LGS GLK L + SN P +V+ L +L ++DLS N +G + W+
Sbjct: 119 LGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVL------- 170
Query: 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297
SDG GE + +++ D+ + R + + +D+SSN F IP LG
Sbjct: 171 ------SDGC---GELKHL--AISGNKISGDVDVSRCVNL-EFLDVSSNNFSTGIP-FLG 217
Query: 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
D +L L++S N L+G + + L+ L++SSN+ G IP
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 89/226 (39%), Gaps = 30/226 (13%)
Query: 95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154
NNL G IPP + TQL L++ + + G IPD F + L +L + N L G+ P
Sbjct: 87 NNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGL-KILVLRSNRFYG--PLCEVNIMLPFEAL 211
++ L + N I P GS L + + NR G P N+ L F
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF--- 201
Query: 212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVL 271
+DLS N +G + +++ + + DL
Sbjct: 202 --VDLSRNML--------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 272 KRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317
+ +DL +N+ G +PQ L K L LN+S N L G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 34/225 (15%)
Query: 6 IRGRISKSDSQRWKSLTYLDISN---NFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPS 62
I I+K + +T+ ++S +FL+QI K + L+ N + GT+ PPS
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-----KTLVTLDFSYNALSGTL---PPS 144
Query: 63 TRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNNNYL 122
+ L G N +SG IP G+FS T + ++ N L
Sbjct: 145 ISSL----PNLVG--------------ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 123 QGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSL 182
G+IP FAN +L + L+ N L G + +++ N + +G
Sbjct: 187 TGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 183 PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPR 227
L L LR+NR YG L + L F L +++S N G +P+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIPQ 286
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 283 LSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
++ G IP L K+L+ L+ S+N L+G++P S +++ L + N++ G IP+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 343 QF 344
+
Sbjct: 168 SY 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVL-ESLDLSS 333
I T+D S N G +P + +L+ + N ++G+IP S+ + L S+ +S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 334 NKLHGRIPEQFVD 346
N+L G+IP F +
Sbjct: 184 NRLTGKIPPTFAN 196
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 25/217 (11%)
Query: 151 FPRYLADCTGLEVVNVG--NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPF 208
P LA+ L + +G NN++G P + L L L + G + + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPD--FLSQI 124
Query: 209 EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE--EDY--YQDSVTVTV 264
+ L +D S+N +G LP S+ ++ N+ DG + G + Y + T
Sbjct: 125 KTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 265 KGRDLVLKRIITIFTT-----IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT---GSI 316
R+ + +I F +DLS N +G+ + G K+ ++L+ N L G +
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 317 PVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF 353
+S L LDL +N+++G +P+ + S
Sbjct: 241 GLSKN----LNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 260 VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS 319
V + KG ++ K I T + L NQF +P+ L ++K L +++LS+N ++ S
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 320 FANMIVLESLDLSSNKLHGRIPEQF 344
F+NM L +L LS N+L P F
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTF 98
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
T +DLS Q + P SL VLN+SHN + + L+ LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 79/210 (37%), Gaps = 16/210 (7%)
Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI---GDTFPSWLGSLPGLKILVLRSN 193
L+ L SNK +F D LE +++ N + G S G++ LK L L
Sbjct: 351 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLS-- 405
Query: 194 RFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD-EKGSDGLYMQGE 252
F G + + L E L +D H+ +F+SL + +D + G
Sbjct: 406 -FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464
Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTI------DLSSNQFQGEIPQVLGDFKSLIVLN 306
+ + + G + IFT + DLS Q + P SL VLN
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 307 LSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
+SHN + + L+ LD S N +
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 296 LGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHG 338
+G K+L LN++HN + +P F+N+ LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 87 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 143
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 144 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 186
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HN L P LG LT+L ++ N L +P G +L+ L L N+L+ P
Sbjct: 86 HNQLQSL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
L LE +++ NN + + L L L L+L+ N Y
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL----RGSFPRYLADCTGLEVVN 165
+ L +L+LN+NYL P F++ + LR L LNSN+L P LE+++
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTA-LRGLSLNSNRLTVLSHNDLP------ANLEILD 532
Query: 166 VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNI 204
+ N + P SL L I N+F +CE +
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDI---THNKF---ICECEL 565
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 136 DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
DL+ L L NK+ L+V+N+ N++G+ + S LP + + L+ N
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 196 YGPLCEVNIMLPFEALRIIDLSHNEFT--GFLP 226
+ + E L+ +DL N T F+P
Sbjct: 351 --AIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 23/198 (11%)
Query: 136 DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
+ R L L N+++ A LE + + N++ P +L L+ L LRSNR
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY 255
L + + L +D+S N+ L ++F L +K+++ +D +Y+
Sbjct: 93 --KLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 256 YQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP-QVLGDFKSLIVLNLSHNGLTG 314
+S+ L L++ +L+S IP + L LIVL L H +
Sbjct: 150 GLNSL------EQLTLEK-------CNLTS------IPTEALSHLHGLIVLRLRHLNINA 190
Query: 315 SIPVSFANMIVLESLDLS 332
SF + L+ L++S
Sbjct: 191 IRDYSFKRLYRLKVLEIS 208
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 23/226 (10%)
Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL--RGSFPRYLADCTGLEVVNVGNNM 170
T L L +N LQ +P + L L L+SN L +G + T L+ +++ N
Sbjct: 31 TRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
+ ++LG L L+ L + + + E ++ L L +D+SH T IF
Sbjct: 90 VITMSSNFLG-LEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIF 146
Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG 290
L +++ + G+ +E++ D T + R+L T +DLS Q +
Sbjct: 147 NGLSSLEVLKMAGNSF-----QENFLPDIFT---ELRNL---------TFLDLSQCQLEQ 189
Query: 291 EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
P SL VLN+SHN + + L+ LD S N +
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 256 YQDSVTVTVKGRDLV-LKRIITIFTTIDLSSNQFQGEIPQ--VLGDFKSLIVLNLSHNGL 312
+ + TV GR L + R I + TT L ++ G I + G L+ L L N L
Sbjct: 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66
Query: 313 TGSIPVSFANMIVLESLDLSSNKL 336
TG P +F ++ L L NK+
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKI 90
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
HNNLS T L L L++N+L +AF +LR L L+SN L
Sbjct: 48 HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLHTLDEF 106
Query: 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSN---RFYGPLCEVNIMLPFEA 210
+D LEV+ + NN I + + L+ L L N RF L + LP
Sbjct: 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP--K 164
Query: 211 LRIIDLSHNEFTGF-------LPRWI 229
L ++DLS N+ LP W+
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWV 190
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRI 340
+DLSSN + D ++L VL L +N + +F +M L+ L LS N++ R
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRF 151
Query: 341 PEQFV 345
P + +
Sbjct: 152 PVELI 156
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 152 PRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEAL 211
P+ L+ T ++N+ N I + + S + SL L+IL++ NR ++++ + L
Sbjct: 16 PKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQEL 71
Query: 212 RIIDLSHNEF 221
+DLSHN+
Sbjct: 72 EYLDLSHNKL 81
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 21/178 (11%)
Query: 164 VNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223
++ NN++ DT G L L+ L+L+ N+ + ++L+ +D+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 224 FLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL 283
DEK D + + S +T D + + + +DL
Sbjct: 388 ---------------YDEKKGDCSWTKSLLSLNMSSNILT----DTIFRCLPPRIKVLDL 428
Query: 284 SSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
SN+ + IP+ + ++L LN++ N L F + L+ + L +N P
Sbjct: 429 HSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 280 TIDLSSNQFQGE--IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
T+DLS N + L + L LNLSHN G +F LE LDL+ +LH
Sbjct: 351 TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 338 GRIPE 342
P+
Sbjct: 411 INAPQ 415
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR----GS 150
NN ++P + + TQL L+L N L+ +P + L+ L LN+N+L+ G+
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 151 FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV 202
F + T L+ +++ N + L L+ + L N+F CE+
Sbjct: 151 FDKL----TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLF 74
+SLT+LD+S N + + + P N+ LN +N I+ + PPS SNNKL
Sbjct: 277 QSLTFLDVSENIFSGLSELP-PNLYYLNASSNEIRSLCDL-PPSLEELNVSNNKLI 330
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 283 LSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
L NQ Q V +L LNL+HN L F + L LDLS N+L +PE
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPE 174
Query: 343 QFVD 346
D
Sbjct: 175 GVFD 178
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR----GS 150
NN ++P + + TQL L+L N L+ +P + L+ L LN+N+L+ G+
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 151 FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV 202
F + T L+ +++ N + L L+ + L N+F CE
Sbjct: 151 FDKL----TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCET 198
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
++LSSN +I + G SL LN S N +T P AN+ LE LD+SSNK+
Sbjct: 134 LELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 266 GRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLN---LSHNGLTGSIPVSFAN 322
G + V K + +DL +N+ EI GDFK+L L+ L +N ++ P +FA
Sbjct: 42 GLEKVPKDLPPDTALLDLQNNKIT-EIKD--GDFKNLKNLHTLILINNKISKISPGAFAP 98
Query: 323 MIVLESLDLSSNKLHGRIPEQF 344
++ LE L LS N+L +PE+
Sbjct: 99 LVKLERLYLSKNQLK-ELPEKM 119
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF-YGPLCEVNIMLPFEALRIIDLSHN 219
L+V+N+ ++++ + LP L+ L L+ N F G + + N + L I+ LS
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486
Query: 220 EFTGFLPRWIFVSLETMKNVD 240
+ + + + F SL+ M +VD
Sbjct: 487 DLSS-IDQHAFTSLKMMNHVD 506
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 266 GRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLN---LSHNGLTGSIPVSFAN 322
G + V K + +DL +N+ EI GDFK+L L+ L +N ++ P +FA
Sbjct: 42 GLEKVPKDLPPDTALLDLQNNKIT-EIKD--GDFKNLKNLHTLILINNKISKISPGAFAP 98
Query: 323 MIVLESLDLSSNKLHGRIPEQF 344
++ LE L LS N+L +PE+
Sbjct: 99 LVKLERLYLSKNQLK-ELPEKM 119
>pdb|2GSR|A Chain A, Structure Of Porcine Class Pi Glutathione S-Transferase
pdb|2GSR|B Chain B, Structure Of Porcine Class Pi Glutathione S-Transferase
Length = 207
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 268 DLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLE 327
DL K I+T + ++ E+P+ L F++L+ N +SFA+ +L+
Sbjct: 96 DLRCKYATLIYTNYEAGKEKYVKELPEHLKPFETLLSQNQGGQAFVVGSQISFADYNLLD 155
Query: 328 SL 329
L
Sbjct: 156 LL 157
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 270 VLKRIITIFTTID---LSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVL 326
+LK + + FT ++ L+ N+ L+ LNLS N L F N+ L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349
Query: 327 ESLDLSSNKLHGRIPEQFV 345
E LDLS N + + F+
Sbjct: 350 EVLDLSYNHIRALGDQSFL 368
>pdb|2YHM|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHP|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|R Chain R, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|S Chain S, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|T Chain T, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|U Chain U, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|V Chain V, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|K Chain K, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|M Chain M, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|W Chain W, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Y Chain Y, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Z Chain Z, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
Length = 375
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 12 KSDSQRWKSLTYLDISNNFLTQIEQHP 38
K++ +R+K L DI+N+F E+HP
Sbjct: 191 KNEMKRYKGLLPKDIANSFYEVFEKHP 217
>pdb|2WJ8|A Chain A, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|B Chain B, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|C Chain C, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|D Chain D, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|E Chain E, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|F Chain F, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|G Chain G, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|H Chain H, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|I Chain I, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|J Chain J, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|K Chain K, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|L Chain L, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|M Chain M, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|N Chain N, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|O Chain O, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|P Chain P, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|Q Chain Q, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|R Chain R, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|S Chain S, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|T Chain T, Respiratory Syncitial Virus Ribonucleoprotein
Length = 391
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 12 KSDSQRWKSLTYLDISNNFLTQIEQHP 38
K++ +R+K L DI+N+F E+HP
Sbjct: 191 KNEMKRYKGLLPKDIANSFYEVFEKHP 217
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
T I L N + P +K L ++LS+N ++ P +F + L SL L NK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 284 SSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
S ++ + E+ Q+L K VLNL HN L+ +F L LDL SN +H
Sbjct: 60 SISKLEPELCQILPLLK---VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIH 110
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
T I L N + P +K L ++LS+N ++ P +F + L SL L NK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,209,583
Number of Sequences: 62578
Number of extensions: 406269
Number of successful extensions: 1094
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 211
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)