Query 044176
Match_columns 362
No_of_seqs 183 out of 2594
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 12:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-36 8.1E-41 301.5 22.8 346 2-353 77-457 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-35 6.3E-40 295.1 23.4 352 1-361 195-581 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.7E-34 8E-39 250.7 7.2 331 1-356 85-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.6E-33 3.4E-38 246.8 5.1 336 19-362 78-427 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.9E-29 6.3E-34 222.1 -3.0 347 1-361 14-372 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3E-27 6.5E-32 209.5 -0.1 308 3-342 41-379 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 6.3E-27 1.4E-31 197.0 -4.2 344 2-361 99-538 (565)
8 PRK15387 E3 ubiquitin-protein 99.9 3E-22 6.6E-27 189.1 17.2 260 2-347 209-468 (788)
9 KOG0472 Leucine-rich repeat pr 99.9 1.5E-25 3.2E-30 188.8 -5.5 310 2-345 168-548 (565)
10 KOG0618 Serine/threonine phosp 99.9 7.2E-23 1.6E-27 188.9 1.1 344 3-362 30-463 (1081)
11 PLN03210 Resistant to P. syrin 99.9 5.2E-20 1.1E-24 186.1 21.5 316 8-335 578-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 7.9E-20 1.7E-24 184.7 22.1 329 10-354 549-899 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 1.7E-20 3.7E-25 177.3 15.8 255 20-362 202-456 (788)
14 KOG4237 Extracellular matrix p 99.8 1.6E-22 3.4E-27 170.2 0.3 277 60-355 66-353 (498)
15 PRK15370 E3 ubiquitin-protein 99.8 6.6E-20 1.4E-24 174.3 14.0 247 19-337 178-428 (754)
16 KOG0618 Serine/threonine phosp 99.8 1.7E-22 3.7E-27 186.5 -3.5 282 23-337 182-489 (1081)
17 PRK15370 E3 ubiquitin-protein 99.8 2.9E-20 6.3E-25 176.7 11.4 240 1-313 185-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 7.1E-20 1.5E-24 161.5 4.7 94 79-172 75-178 (319)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.3E-19 5E-24 158.2 5.6 240 62-341 24-295 (319)
20 KOG4237 Extracellular matrix p 99.7 9.7E-20 2.1E-24 153.6 -3.6 146 23-170 50-199 (498)
21 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.1E-22 124.5 -2.6 149 18-171 32-185 (264)
22 KOG0617 Ras suppressor protein 99.6 3.7E-17 8.1E-22 122.9 -2.3 83 110-196 33-115 (264)
23 KOG1909 Ran GTPase-activating 99.4 2.6E-14 5.7E-19 119.3 0.2 249 38-337 28-311 (382)
24 KOG1909 Ran GTPase-activating 99.3 1.6E-12 3.5E-17 108.8 4.0 185 135-361 92-308 (382)
25 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.1E-16 96.4 5.2 103 84-190 41-147 (175)
26 KOG3207 Beta-tubulin folding c 99.2 9.6E-12 2.1E-16 107.1 2.0 211 82-337 118-339 (505)
27 KOG3207 Beta-tubulin folding c 99.2 6.2E-12 1.3E-16 108.3 0.5 182 14-197 141-340 (505)
28 KOG0532 Leucine-rich repeat (L 99.2 2.6E-12 5.6E-17 114.1 -1.9 190 21-219 77-270 (722)
29 COG4886 Leucine-rich repeat (L 99.1 8.6E-11 1.9E-15 106.7 6.2 195 23-228 97-296 (394)
30 COG4886 Leucine-rich repeat (L 99.1 1.6E-10 3.5E-15 104.9 7.1 169 20-196 117-290 (394)
31 PF14580 LRR_9: Leucine-rich r 99.1 2.1E-10 4.5E-15 90.0 5.9 124 41-167 20-148 (175)
32 KOG1259 Nischarin, modulator o 99.1 4.8E-11 1E-15 98.3 2.2 76 275-353 328-404 (490)
33 KOG0532 Leucine-rich repeat (L 99.1 8.4E-12 1.8E-16 110.9 -3.1 190 23-224 54-249 (722)
34 PF13855 LRR_8: Leucine rich r 99.1 1.5E-10 3.3E-15 74.7 3.5 61 276-336 1-61 (61)
35 KOG4658 Apoptotic ATPase [Sign 99.0 3.4E-10 7.3E-15 110.3 7.4 287 18-331 522-826 (889)
36 KOG1259 Nischarin, modulator o 99.0 5.2E-11 1.1E-15 98.1 1.5 137 82-227 281-417 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.6E-09 3.5E-14 105.7 5.7 279 38-338 521-808 (889)
38 PLN03150 hypothetical protein; 98.9 7.8E-09 1.7E-13 98.6 9.0 107 87-195 420-527 (623)
39 PLN03150 hypothetical protein; 98.8 9.2E-09 2E-13 98.1 8.2 108 62-171 419-527 (623)
40 PF13855 LRR_8: Leucine rich r 98.8 1.4E-09 3E-14 70.1 1.8 60 300-362 1-60 (61)
41 KOG2120 SCF ubiquitin ligase, 98.8 2.4E-10 5.2E-15 94.0 -2.5 182 136-334 186-373 (419)
42 KOG2120 SCF ubiquitin ligase, 98.7 7.5E-10 1.6E-14 91.2 -2.8 223 113-357 139-372 (419)
43 KOG2982 Uncharacterized conser 98.7 6.2E-09 1.4E-13 85.9 2.0 200 18-217 70-287 (418)
44 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.8E-13 92.8 -0.0 102 18-123 94-199 (414)
45 KOG0531 Protein phosphatase 1, 98.5 2E-08 4.2E-13 91.6 -0.6 192 18-222 71-268 (414)
46 COG5238 RNA1 Ran GTPase-activa 98.5 6E-08 1.3E-12 79.2 1.8 44 80-123 87-133 (388)
47 COG5238 RNA1 Ran GTPase-activa 98.4 1.7E-07 3.7E-12 76.6 2.8 88 135-222 92-198 (388)
48 KOG1859 Leucine-rich repeat pr 98.3 9.1E-08 2E-12 88.3 0.2 126 111-246 165-291 (1096)
49 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.8E-12 78.3 0.6 77 21-97 47-133 (418)
50 KOG4579 Leucine-rich repeat (L 98.3 1.2E-07 2.6E-12 69.4 0.0 83 275-362 52-134 (177)
51 PF12799 LRR_4: Leucine Rich r 98.3 1.3E-06 2.9E-11 51.5 3.8 38 300-338 1-38 (44)
52 KOG4341 F-box protein containi 98.3 6.1E-08 1.3E-12 83.7 -2.9 277 41-335 139-437 (483)
53 KOG1859 Leucine-rich repeat pr 98.2 3E-07 6.5E-12 85.0 -0.3 178 152-362 102-290 (1096)
54 KOG1644 U2-associated snRNP A' 98.1 5.5E-06 1.2E-10 64.9 5.3 82 111-193 65-150 (233)
55 KOG4579 Leucine-rich repeat (L 98.1 2.7E-07 5.9E-12 67.5 -1.8 83 85-171 53-135 (177)
56 KOG4341 F-box protein containi 98.0 9E-08 1.9E-12 82.7 -6.0 282 61-360 138-435 (483)
57 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 63.3 5.6 131 85-220 19-151 (233)
58 PF12799 LRR_4: Leucine Rich r 98.0 6.8E-06 1.5E-10 48.5 3.4 38 276-314 1-38 (44)
59 KOG3665 ZYG-1-like serine/thre 98.0 3.9E-06 8.5E-11 80.4 2.8 154 85-240 122-281 (699)
60 PRK15386 type III secretion pr 97.9 0.0001 2.2E-09 65.5 10.3 133 18-169 51-187 (426)
61 KOG3665 ZYG-1-like serine/thre 97.9 6E-06 1.3E-10 79.1 2.9 159 110-308 122-283 (699)
62 PRK15386 type III secretion pr 97.8 0.00017 3.7E-09 64.1 9.9 75 81-170 48-123 (426)
63 KOG2739 Leucine-rich acidic nu 97.6 8.4E-05 1.8E-09 60.9 4.0 86 275-360 64-155 (260)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00044 9.6E-09 51.9 6.5 40 9-49 2-44 (129)
65 PF13306 LRR_5: Leucine rich r 97.4 0.00057 1.2E-08 51.3 6.7 59 57-118 8-66 (129)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00032 6.9E-09 57.6 2.2 83 275-361 42-126 (260)
67 KOG2123 Uncharacterized conser 96.8 3.1E-05 6.8E-10 63.9 -5.3 82 18-99 18-102 (388)
68 KOG1947 Leucine rich repeat pr 96.7 0.00045 9.7E-09 64.6 0.4 37 110-146 243-280 (482)
69 KOG1947 Leucine rich repeat pr 96.5 0.00062 1.4E-08 63.6 0.2 172 39-220 187-373 (482)
70 KOG2123 Uncharacterized conser 96.5 0.00019 4.1E-09 59.4 -2.9 100 111-215 20-123 (388)
71 PF00560 LRR_1: Leucine Rich R 96.5 0.0013 2.7E-08 32.2 1.1 21 325-346 1-21 (22)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.01 2.2E-07 28.9 1.4 18 20-37 1-18 (22)
73 KOG3864 Uncharacterized conser 95.3 0.0059 1.3E-07 48.4 0.6 82 277-358 102-186 (221)
74 PF13504 LRR_7: Leucine rich r 94.9 0.018 4E-07 26.0 1.4 17 19-35 1-17 (17)
75 KOG4308 LRR-containing protein 94.8 0.00079 1.7E-08 62.0 -6.6 64 278-341 235-307 (478)
76 KOG4308 LRR-containing protein 94.7 0.00047 1E-08 63.4 -8.0 62 276-337 262-331 (478)
77 PF13516 LRR_6: Leucine Rich r 94.2 0.017 3.7E-07 28.8 0.4 18 324-341 2-19 (24)
78 KOG3864 Uncharacterized conser 93.1 0.019 4.2E-07 45.6 -0.8 37 299-335 150-187 (221)
79 smart00370 LRR Leucine-rich re 92.6 0.098 2.1E-06 26.5 1.8 20 85-105 2-21 (26)
80 smart00369 LRR_TYP Leucine-ric 92.6 0.098 2.1E-06 26.5 1.8 20 85-105 2-21 (26)
81 PF13516 LRR_6: Leucine Rich r 92.6 0.038 8.2E-07 27.5 0.2 18 300-317 2-19 (24)
82 smart00370 LRR Leucine-rich re 91.8 0.15 3.2E-06 25.9 1.8 15 324-338 2-16 (26)
83 smart00369 LRR_TYP Leucine-ric 91.8 0.15 3.2E-06 25.9 1.8 15 324-338 2-16 (26)
84 smart00365 LRR_SD22 Leucine-ri 82.9 1.2 2.6E-05 22.6 1.8 17 19-35 2-18 (26)
85 KOG0473 Leucine-rich repeat pr 81.2 0.042 9.2E-07 44.7 -5.9 81 62-147 43-123 (326)
86 smart00368 LRR_RI Leucine rich 80.8 0.94 2E-05 23.4 1.0 11 302-312 4-14 (28)
87 KOG0473 Leucine-rich repeat pr 80.1 0.059 1.3E-06 43.9 -5.4 90 78-172 35-124 (326)
88 smart00364 LRR_BAC Leucine-ric 78.2 1.6 3.5E-05 22.1 1.3 18 19-36 2-19 (26)
89 KOG3763 mRNA export factor TAP 73.9 1.6 3.5E-05 40.5 1.1 75 17-91 216-307 (585)
90 KOG3763 mRNA export factor TAP 72.0 2.8 6.1E-05 38.9 2.3 85 275-359 217-312 (585)
91 KOG4242 Predicted myosin-I-bin 65.6 23 0.0005 32.6 6.5 182 40-226 165-371 (553)
92 smart00367 LRR_CC Leucine-rich 62.3 5.2 0.00011 20.0 1.2 16 323-338 1-17 (26)
93 TIGR00864 PCC polycystin catio 35.1 24 0.00053 39.9 2.0 29 1-30 2-30 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-36 Score=301.51 Aligned_cols=346 Identities=29% Similarity=0.400 Sum_probs=180.6
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccc-cccc---CCcCCCcEEEccCCcCCCCCCC-CCCCccEEEccCcccccC
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQ---HPWKNITVLNLQNNTIQGTILV-PPPSTRAFLFSNNKLFGQ 76 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~~~~---~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~~~~~~~ 76 (362)
++|+++|.+|.. +..+++|+.|++++|+++ .++. ..+++|++|++++|.+.+..+. .+++|++|++++|.+.+.
T Consensus 77 ~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~ 155 (968)
T PLN00113 77 SGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE 155 (968)
T ss_pred cCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc
Confidence 455666555443 333466666666666665 2333 1455666666666666544333 256666666666666555
Q ss_pred CcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhh
Q 044176 77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLA 156 (362)
Q Consensus 77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 156 (362)
.|..++++++|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+..|..+... ++|++|++++|.+.+..|..++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHh
Confidence 56666666666666666666555555555555 456666666666555555555443 5566666666665555555556
Q ss_pred cCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhh
Q 044176 157 DCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236 (362)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 236 (362)
.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+... ..+++|++|++++|.+.+..|.. +..+++|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L 310 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPEL-VIQLQNL 310 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChh-HcCCCCC
Confidence 66666666666665555555555555566666665555544333322 34455555555555554444433 3344444
Q ss_pred hhccccCCCccccc-------------------------CCccccccceeeee--cC---cchHhhhhcccccEEeccCc
Q 044176 237 KNVDEKGSDGLYMQ-------------------------GEEDYYQDSVTVTV--KG---RDLVLKRIITIFTTIDLSSN 286 (362)
Q Consensus 237 ~~l~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~--~~---~~~~~~~~~~~L~~L~l~~n 286 (362)
+.+++.++...... ...........+.. .. ........+++++.|++++|
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 44444443221110 00000000000000 00 00111112344555555555
Q ss_pred ccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhcc
Q 044176 287 QFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF 353 (362)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l 353 (362)
.+++..|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|++++.+|..+..+++|+.|
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 5555555555555666666666666655555666666666666666666666555555555555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-35 Score=295.10 Aligned_cols=352 Identities=30% Similarity=0.431 Sum_probs=211.9
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCCC---CCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL---VPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~~~~~ 74 (362)
|++|++++.+|..+... ++|+.|++++|.++...+ ..+++|+.|++++|.+.+..+ ..+++|+.|++++|.+.
T Consensus 195 L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 195 LASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred ccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 35666666666554443 677777777766664333 355666666666666554332 22556666666666665
Q ss_pred cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 154 (362)
+..|..+.++++|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+..|..+... ++|++|++++|.+.+..|..
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChH
Confidence 5555556666666666666666554555544444 455555555555554444444432 45555555555555444545
Q ss_pred hhcCCCCcEEEccCCCC------------------------CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCc
Q 044176 155 LADCTGLEVVNVGNNMI------------------------GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA 210 (362)
Q Consensus 155 ~~~l~~L~~L~l~~~~~------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 210 (362)
++.+++|+.|++++|.+ .+..|..+..+++|+.|++++|.+.+..+.. +..+++
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~--~~~l~~ 429 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE--FTKLPL 429 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh--HhcCCC
Confidence 55555555555554444 4444444555556666666666555443332 245666
Q ss_pred ccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccc--eeeeec---CcchHhhhhcccccEEeccC
Q 044176 211 LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDS--VTVTVK---GRDLVLKRIITIFTTIDLSS 285 (362)
Q Consensus 211 L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~L~~L~l~~ 285 (362)
|+.+++++|.+.+..+.. +..+++|+.+++.++............... +..... .........+++|+.|++++
T Consensus 430 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 430 VYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 666666666666555443 345666666666666433211110000111 111111 11122234477889999999
Q ss_pred cccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176 286 NQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 286 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n 361 (362)
|.+.+.+|..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++.+|..+..++.|+.+ ++++|
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l---~ls~N 581 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV---NISHN 581 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE---eccCC
Confidence 99988888888889999999999999998888999999999999999999998889888877777666 56665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-34 Score=250.66 Aligned_cols=331 Identities=22% Similarity=0.210 Sum_probs=244.7
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc--C------------------------CcCCCcEEEccCCcCCC
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--H------------------------PWKNITVLNLQNNTIQG 54 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~------------------------~~~~L~~L~l~~n~~~~ 54 (362)
+++|++. .+....|..+++|+++.+..|.++.+|. + .++.||.|||+.|.|..
T Consensus 85 lsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~ 163 (873)
T KOG4194|consen 85 LSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE 163 (873)
T ss_pred ccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc
Confidence 4566666 5555555556666666666666666655 1 23344555555554443
Q ss_pred C---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhh
Q 044176 55 T---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFA 131 (362)
Q Consensus 55 ~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 131 (362)
. .+..-+++++|++++|.|+......|.++.+|..|.|+.|+++ .+|...++-.++|+.|++.+|++...-...|.
T Consensus 164 i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 164 IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence 2 2223455777777777777666667777777777777777777 67766666336777777777777632233443
Q ss_pred cCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcc
Q 044176 132 NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEAL 211 (362)
Q Consensus 132 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L 211 (362)
++++|+.|.+.+|.+.....++|..+.++++|++..|++......++.++++|+.|+++.|.+....++. +..+++|
T Consensus 243 -gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~--WsftqkL 319 (873)
T KOG4194|consen 243 -GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS--WSFTQKL 319 (873)
T ss_pred -CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch--hhhcccc
Confidence 3477777777777777666778888889999999999887777778888999999999999887655444 4667899
Q ss_pred cEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCC
Q 044176 212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE 291 (362)
Q Consensus 212 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 291 (362)
++|++++|.++ ..++..+..+..|+.|.+.++...+ .....+..+++|+.|||+.|.+...
T Consensus 320 ~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~------------------l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 320 KELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDH------------------LAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred eeEeccccccc-cCChhHHHHHHHhhhhcccccchHH------------------HHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 99999999999 6777779999999999999885433 3334445588999999999988543
Q ss_pred ---cchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCC
Q 044176 292 ---IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARP 356 (362)
Q Consensus 292 ---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~ 356 (362)
....|.+++.|+.|.+.||++..+...+|.++++|++|||.+|.|-.+-|++|..+ +|+.|.+.
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 35567889999999999999997777899999999999999999999999999998 88877554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=1.6e-33 Score=246.77 Aligned_cols=336 Identities=20% Similarity=0.205 Sum_probs=242.8
Q ss_pred CCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCCCCC--CCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176 19 KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVP--PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS 93 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 93 (362)
+..+.|++++|.+.++.. ..+++|+.+++.+|.++.+.-.+ ..+++.|++.+|.|..+-...+.-++.|+.|||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 457789999999999887 58899999999999988755333 6779999999999998888888889999999999
Q ss_pred cCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173 (362)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (362)
.|.++ +++..-+.-..++++|++++|+|+......|... .+|..|.+++|+++...+..|..+++|+.|++..|++..
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 99998 7776555544689999999999986555566655 689999999999996666678889999999999999854
Q ss_pred CcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCc
Q 044176 174 TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253 (362)
Q Consensus 174 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 253 (362)
.-.-+|..+++|+.|.+..|.+...... +|..+.++++|++..|++..... ...-.++.|+.|+++.+....+....
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDG--AFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCc--ceeeecccceeecccchhhhhhc-ccccccchhhhhccchhhhheeecch
Confidence 4456788999999999999988763333 45788899999999999984444 44677889999998887542222110
Q ss_pred c-c--cccceeee---ecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc---CchhhhhcCC
Q 044176 254 D-Y--YQDSVTVT---VKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG---SIPVSFANMI 324 (362)
Q Consensus 254 ~-~--~~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~---~~~~~~~~~~ 324 (362)
= + ...++.++ .+......+..+..|+.|.|++|.++..--..|.++++|++|+|.+|.+.. .-...|.+++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 0 0 00011111 112222333334555555555555553333445566677777777776652 2344577777
Q ss_pred CcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 325 VLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 325 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+|++|++.||++..+...+|.+++.|++| ||.+|+
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~L---dL~~Na 427 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHL---DLGDNA 427 (873)
T ss_pred hhhheeecCceeeecchhhhccCccccee---cCCCCc
Confidence 88888888888776555577777777776 666664
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.9e-29 Score=222.13 Aligned_cols=347 Identities=23% Similarity=0.344 Sum_probs=225.8
Q ss_pred CCCCccc-ccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC--CCCCCCccEEEccCccccc
Q 044176 1 LSNNRIR-GRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI--LVPPPSTRAFLFSNNKLFG 75 (362)
Q Consensus 1 L~~n~~~-~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~L~~L~l~~~~~~~ 75 (362)
++.|.++ |..|.++-+ |+++++|.+.+.++..+|. .++.+|+.|.+.+|++.... ...+|.|+.+.+++|+++.
T Consensus 14 fsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn 92 (1255)
T KOG0444|consen 14 FSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN 92 (1255)
T ss_pred ccCCcCCCCcCchhHHH-hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc
Confidence 4678887 556665555 4999999999999999887 47888888888888876533 4457888888888887763
Q ss_pred -CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176 76 -QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154 (362)
Q Consensus 76 -~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 154 (362)
-+|+.+..+..|..|||++|++. +.|..+... ++.-.|++++|+|. .+|..++..+..|-.|++++|++. ..|..
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A-Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA-KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred CCCCchhcccccceeeecchhhhh-hcchhhhhh-cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence 36677778888888888888888 788877766 57778888888887 677766665677778888888776 55666
Q ss_pred hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCC-ccccccccccCCcccEEeccCCcccCCCchhHHhhh
Q 044176 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG-PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233 (362)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 233 (362)
...+..|+.|++++|.+...-...+..+++|+.|.+++.+-+- ..|.. +..+.+|+.+|++.|++. ..|+. ...+
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp-~vPec-ly~l 244 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSENNLP-IVPEC-LYKL 244 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccccCCC-cchHH-Hhhh
Confidence 7777777777777776643322223344444555554443321 11111 133444555555555544 33322 3344
Q ss_pred hhhhhccccCCCcccccCCccccccceeeeecCcch----HhhhhcccccEEeccCcccCC-CcchhhcCCCCCcEEEcc
Q 044176 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDL----VLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLS 308 (362)
Q Consensus 234 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~ 308 (362)
++|+.+.++.+...........+.....+..+..+. ...--+++|+.|.+.+|+++- -+|+.++.+.+|+.++.+
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 444444444444333322222211111111111111 111116778888898888863 368888889999999999
Q ss_pred CCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176 309 HNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 309 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n 361 (362)
+|.+. .+|++++.|++|+.|.|+.|++- ..|+++--++.|..| |+..|
T Consensus 325 nN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vL---DlreN 372 (1255)
T KOG0444|consen 325 NNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVL---DLREN 372 (1255)
T ss_pred ccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCccee---eccCC
Confidence 88887 89999999999999999999987 688877666555555 66655
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=3e-27 Score=209.48 Aligned_cols=308 Identities=23% Similarity=0.309 Sum_probs=231.0
Q ss_pred CCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCCC----CCCCCccEEEccCcccccC
Q 044176 3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTIL----VPPPSTRAFLFSNNKLFGQ 76 (362)
Q Consensus 3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~~~~~~~ 76 (362)
...+. .+|..+... ++|++|.+..|+++.+.+ ..++.||.+++..|++..... ..+..|+.|++++|++. .
T Consensus 41 rt~L~-~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-E 117 (1255)
T KOG0444|consen 41 RTKLE-QVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-E 117 (1255)
T ss_pred hhhhh-hChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-h
Confidence 34555 788888876 999999999999998887 578999999999998875332 23788899999999998 6
Q ss_pred CcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC-------
Q 044176 77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG------- 149 (362)
Q Consensus 77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------- 149 (362)
.|..+..-+++-+|+|++|+|. .+|..++....-|-.||+++|++. .+|...... ..|++|.+++|++..
T Consensus 118 vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL-~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL-SMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHH-hhhhhhhcCCChhhHHHHhcCc
Confidence 7888888899999999999998 899888776677888999999987 778777765 578888888876542
Q ss_pred ------------------CCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcc
Q 044176 150 ------------------SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEAL 211 (362)
Q Consensus 150 ------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L 211 (362)
.+|..+..+.+|+.+|++.|.+ ..+|+.+.++++|+.|+|++|+++..... ...+.+|
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~---~~~W~~l 270 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMT---EGEWENL 270 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeecc---HHHHhhh
Confidence 3455555666677777777766 45667777777777777777777653222 1445677
Q ss_pred cEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCC
Q 044176 212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE 291 (362)
Q Consensus 212 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 291 (362)
++|+++.|+++ .+|.. ...++.|+.+....+.... .+.+..+ +-+..|+.+...+|++. .
T Consensus 271 EtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~F----------------eGiPSGI-GKL~~Levf~aanN~LE-l 330 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTF----------------EGIPSGI-GKLIQLEVFHAANNKLE-L 330 (1255)
T ss_pred hhhccccchhc-cchHH-HhhhHHHHHHHhccCcccc----------------cCCccch-hhhhhhHHHHhhccccc-c
Confidence 77777777776 45544 5566777766655553211 1111111 11566889999999986 8
Q ss_pred cchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCch
Q 044176 292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342 (362)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 342 (362)
+|+.++.+.+|+.|.|+.|.+. .+|+++.-++.|+.||+..|.-. .+|+
T Consensus 331 VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPP 379 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPP 379 (1255)
T ss_pred CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCC
Confidence 8999999999999999999988 79999999999999999999755 4444
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=6.3e-27 Score=196.99 Aligned_cols=344 Identities=24% Similarity=0.317 Sum_probs=211.5
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcC-----------------------CCCC
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTI-----------------------QGTI 56 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~-----------------------~~~~ 56 (362)
++|++. .+|.+.... +++++++++.|.+..++. +.+..++.++..+|++ ....
T Consensus 99 s~n~ls-~lp~~i~s~-~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~ 176 (565)
T KOG0472|consen 99 SHNKLS-ELPEQIGSL-ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALP 176 (565)
T ss_pred ccchHh-hccHHHhhh-hhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCC
Confidence 455555 566665555 666666666665555554 2344444444444444 3322
Q ss_pred CCC--CCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCC
Q 044176 57 LVP--PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS 134 (362)
Q Consensus 57 ~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 134 (362)
+.. ++.|++++..+|-+. .+|+.++.+.+|..|++..|++. .+| ++... ..|+++.++.|.+. .+|++..+.+
T Consensus 177 ~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~-~lpae~~~~L 251 (565)
T KOG0472|consen 177 ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIE-MLPAEHLKHL 251 (565)
T ss_pred HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHH-hhHHHHhccc
Confidence 222 677788888887776 67778888888888888888888 777 44444 46888888888887 7888888777
Q ss_pred CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCc----------------
Q 044176 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP---------------- 198 (362)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---------------- 198 (362)
+++..|++++|+++ ..|..++-+.+|+.||+++|.+ ...|..++++ .|+.|.+.+|++...
T Consensus 252 ~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred ccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 89999999999998 6788888899999999999998 4567778888 888888888875310
Q ss_pred ---------------------ccc--ccccccCCcccEEeccCCcccCCCchhHHhhhh--hhhhccccCCCcccccCCc
Q 044176 199 ---------------------LCE--VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE--TMKNVDEKGSDGLYMQGEE 253 (362)
Q Consensus 199 ---------------------~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~~~ 253 (362)
.+. ......+.+.+.|++++-+++ ..|...|..-. -...+++..+....++...
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 000 001122345566666666665 33333222221 1233444444444443321
Q ss_pred cccccc-----eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc---------------
Q 044176 254 DYYQDS-----VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT--------------- 313 (362)
Q Consensus 254 ~~~~~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~--------------- 313 (362)
.-.... .+.......+.....+++|+.|++++|.+. .+|..++.+..|+.|+++.|.+.
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtl 486 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETL 486 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHH
Confidence 111110 001111111222233667777777777665 45556666666777777665443
Q ss_pred --------cCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176 314 --------GSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 314 --------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n 361 (362)
...+..+..|..|+.||+.+|.+. .+|..++++++|++| +++||
T Consensus 487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hL---eL~gN 538 (565)
T KOG0472|consen 487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHL---ELDGN 538 (565)
T ss_pred HhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEE---EecCC
Confidence 122334666677777777777777 566677777777776 55665
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=3e-22 Score=189.13 Aligned_cols=260 Identities=22% Similarity=0.318 Sum_probs=143.0
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSI 81 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 81 (362)
++|.++ .+|+.+. ++|+.|++++|+++.++. ..++|+.|++++|.++.. +..+++|+.|++++|.+.. +|..
T Consensus 209 s~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~-lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~-Lp~l- 280 (788)
T PRK15387 209 GESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTH-LPAL- 280 (788)
T ss_pred CCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC-CCCCCcEEEecCCccCcc-cCcccccceeeccCCchhh-hhhc-
Confidence 445555 4555433 345555555555555543 235555555555555532 2234455555555555542 2221
Q ss_pred cCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC
Q 044176 82 YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL 161 (362)
Q Consensus 82 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (362)
..+|+.|++++|+++ .+|.. .++|+.|++++|.+. .+|.. ...|+.|++++|.+++ +|.. ..+|
T Consensus 281 --p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l---p~~L 344 (788)
T PRK15387 281 --PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL---PSGL 344 (788)
T ss_pred --hhhcCEEECcCCccc-ccccc----ccccceeECCCCccc-cCCCC----cccccccccccCcccc-cccc---cccc
Confidence 234555555555555 44431 134555555555554 23321 1235555555555542 2221 1345
Q ss_pred cEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccc
Q 044176 162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDE 241 (362)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~ 241 (362)
+.|++++|++.. +|.. .++|+.|++++|.+... +.. ..+|+.|++++|.+.+ +|.
T Consensus 345 q~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L-P~l-----~~~L~~LdLs~N~Lt~-LP~-------------- 399 (788)
T PRK15387 345 QELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL-----PSGLKELIVSGNRLTS-LPV-------------- 399 (788)
T ss_pred ceEecCCCccCC-CCCC---CcccceehhhccccccC-ccc-----ccccceEEecCCcccC-CCC--------------
Confidence 555555555532 2221 23445555555554431 111 1345555555555442 221
Q ss_pred cCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhh
Q 044176 242 KGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321 (362)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 321 (362)
.+++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+.
T Consensus 400 --------------------------------l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~ 442 (788)
T PRK15387 400 --------------------------------LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLI 442 (788)
T ss_pred --------------------------------cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHh
Confidence 03568899999999884 4543 356888999999998 6888899
Q ss_pred cCCCcCEEEccCCcccccCchhhhhh
Q 044176 322 NMIVLESLDLSSNKLHGRIPEQFVDA 347 (362)
Q Consensus 322 ~~~~L~~L~l~~n~~~~~~~~~~~~l 347 (362)
+++.|+.|++++|++++..+..+..+
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hccCCCeEECCCCCCCchHHHHHHHH
Confidence 99999999999999998777766444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.5e-25 Score=188.80 Aligned_cols=310 Identities=25% Similarity=0.312 Sum_probs=173.3
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC-C---------------------
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI-L--------------------- 57 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~-~--------------------- 57 (362)
.+|+++ ++|+.... |+.|+++|+-.|-++.+|+ +.+..|..|++..|++.... +
T Consensus 168 ~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa 245 (565)
T KOG0472|consen 168 EGNKLK-ALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA 245 (565)
T ss_pred cccchh-hCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH
Confidence 355555 45555444 4666666666666666666 34555666666666554311 2
Q ss_pred ---CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhc--
Q 044176 58 ---VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN-- 132 (362)
Q Consensus 58 ---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-- 132 (362)
+.++++..||+++|+++ ..|+.++.+++|++||+++|.++ .+|.+++.+ .|+.|-+.||++.. +-..+.+
T Consensus 246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrT-iRr~ii~~g 320 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRT-IRREIISKG 320 (565)
T ss_pred HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHH-HHHHHHccc
Confidence 22556666666666666 45666666666666666666666 566666665 46666666665431 1000000
Q ss_pred ---------------------------------------CCCCccEEeccCCcccCCCchhhhcC--CCCcEEEccCCCC
Q 044176 133 ---------------------------------------GSCDLRSLGLNSNKLRGSFPRYLADC--TGLEVVNVGNNMI 171 (362)
Q Consensus 133 ---------------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~ 171 (362)
.+...+.|++++-+++.+..+.|..- .-....+++.|++
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL 400 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL 400 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH
Confidence 00123334444444442222222211 1244455555554
Q ss_pred CCCcchhccCCCCCCe-EEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCccccc
Q 044176 172 GDTFPSWLGSLPGLKI-LVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQ 250 (362)
Q Consensus 172 ~~~~~~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 250 (362)
. .+|..+..+..+.+ +.++.|.+ +.++... ..+++|..|+++.|-+. .+|.. +..+..++.++++.+.....+
T Consensus 401 ~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l--~~l~kLt~L~L~NN~Ln-~LP~e-~~~lv~Lq~LnlS~NrFr~lP 474 (565)
T KOG0472|consen 401 C-ELPKRLVELKELVTDLVLSNNKI-SFVPLEL--SQLQKLTFLDLSNNLLN-DLPEE-MGSLVRLQTLNLSFNRFRMLP 474 (565)
T ss_pred h-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHH--Hhhhcceeeecccchhh-hcchh-hhhhhhhheecccccccccch
Confidence 2 22222222222222 33333332 2233222 45566666666666555 45544 333444666666655322211
Q ss_pred CCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEE
Q 044176 251 GEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLD 330 (362)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 330 (362)
. ....+..++.+-.++|++....++.+.++.+|+.|++.+|.+. .+|+.+++|.+|++|+
T Consensus 475 ~-------------------~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 475 E-------------------CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE 534 (565)
T ss_pred H-------------------HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence 1 1111445777777889998777777999999999999999998 7999999999999999
Q ss_pred ccCCcccccCchhhh
Q 044176 331 LSSNKLHGRIPEQFV 345 (362)
Q Consensus 331 l~~n~~~~~~~~~~~ 345 (362)
++||+|. ..++.+.
T Consensus 535 L~gNpfr-~Pr~~iL 548 (565)
T KOG0472|consen 535 LDGNPFR-QPRHQIL 548 (565)
T ss_pred ecCCccC-CCHHHHh
Confidence 9999999 4444443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=7.2e-23 Score=188.95 Aligned_cols=344 Identities=23% Similarity=0.296 Sum_probs=170.9
Q ss_pred CCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCCCC--CCCCccEEEccCcccccCCc
Q 044176 3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTILV--PPPSTRAFLFSNNKLFGQIP 78 (362)
Q Consensus 3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 78 (362)
.|.+- ..|-.+....-+|+.|++++|++...|. ..+.+|+.|+++.|.|...... .+.+|+.+.+.+|.+. ..|
T Consensus 30 ~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP 107 (1081)
T KOG0618|consen 30 RNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLP 107 (1081)
T ss_pred ccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCc
Confidence 34444 3444444444558888888888888776 3567788888888877654422 2677777777777766 567
Q ss_pred ccccCCCCCCEEEcccCcccccCCCCccccc---------------------------------------ccccE-EEcc
Q 044176 79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFS---------------------------------------TQLTI-LHLN 118 (362)
Q Consensus 79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~---------------------------------------~~L~~-L~l~ 118 (362)
..+..+++|++|+++.|.+. .+|..+..+. ..+++ |++.
T Consensus 108 ~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr 186 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLR 186 (1081)
T ss_pred hhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecc
Confidence 77777788888888877775 4443322210 11222 3444
Q ss_pred cccccCcchhhhhc-----------------CCC----------------------CccEEeccCCcccCCCchhhhcCC
Q 044176 119 NNYLQGRIPDAFAN-----------------GSC----------------------DLRSLGLNSNKLRGSFPRYLADCT 159 (362)
Q Consensus 119 ~~~~~~~~~~~~~~-----------------~~~----------------------~L~~L~l~~~~~~~~~~~~~~~l~ 159 (362)
.|.+. ........ .-+ +|++++++.+.+. ..|.+++.+.
T Consensus 187 ~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~ 264 (1081)
T KOG0618|consen 187 YNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACA 264 (1081)
T ss_pred cchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcc
Confidence 43332 10000000 001 2333333433333 2344455555
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhh-hhh
Q 044176 160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET-MKN 238 (362)
Q Consensus 160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-l~~ 238 (362)
+|+.++...|.+ ...|..+....+|+.+.+..|.+...++. ..+.++|++|++..|.+. ..|...+..... +..
T Consensus 265 nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~---le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 265 NLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPF---LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT 339 (1081)
T ss_pred cceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCc---ccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence 555555555555 22334444445555555555554432222 245678888888888887 455444433332 444
Q ss_pred ccccCCCcccccCCcccccc------ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcC
Q 044176 239 VDEKGSDGLYMQGEEDYYQD------SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312 (362)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 312 (362)
++...+.............. ...-..+.....+..+.++|+.|++++|.+.......+.++..|++|+|+||++
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 44333322222110000000 000000111111122245555555555555544444455555555555555555
Q ss_pred ccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 313 TGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 313 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+ .+|..+..++.|+.|...+|++. ..| .+.. +..|.+.|++.|+
T Consensus 420 ~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~---l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 420 T-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ---LPQLKVLDLSCNN 463 (1081)
T ss_pred h-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh---cCcceEEecccch
Confidence 5 45555555555555555555555 344 2333 3334444666553
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=5.2e-20 Score=186.05 Aligned_cols=316 Identities=18% Similarity=0.186 Sum_probs=180.6
Q ss_pred ccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCC--CCCCCCCccEEEccCcccccCCcccccCC
Q 044176 8 GRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGT--ILVPPPSTRAFLFSNNKLFGQIPPSIYSL 84 (362)
Q Consensus 8 ~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 84 (362)
..+|..+...-++|+.|.+.++.++.+|. ..+.+|+.|++.++.+... ....+++|+.++++++.....+| .++.+
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l 656 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA 656 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccC
Confidence 34566555443568888888888887776 3567788888888877642 23447888888888765444555 36778
Q ss_pred CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEE
Q 044176 85 SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV 164 (362)
Q Consensus 85 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 164 (362)
++|++|++++|.....+|..+..+ ++|+.|++++|.....+|..+ .+++|++|++++|.....+|. ...+|+.|
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L 730 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNISWL 730 (1153)
T ss_pred CcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcCee
Confidence 888888888776554777777776 678888888775444566654 236788888888754434332 23567777
Q ss_pred EccCCCCCCCcchhccCCCCCCeEEccCCcCCCcccc-----ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhc
Q 044176 165 NVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCE-----VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239 (362)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 239 (362)
++.+|.+.. +|..+ .+++|++|.+..+........ ......+++|+.|++++|.....+|.. +..+++|+.|
T Consensus 731 ~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L 807 (1153)
T PLN03210 731 DLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHL 807 (1153)
T ss_pred ecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEE
Confidence 787777633 34332 455666666654321110000 001122356666666666555455554 4556666666
Q ss_pred cccCCCcccc-cCCccccccceeeeecC--cchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc
Q 044176 240 DEKGSDGLYM-QGEEDYYQDSVTVTVKG--RDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316 (362)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 316 (362)
++.+|..... +... .......+.... ....++..+++++.|++++|.++ .+|..+..+++|+.|++++|.-...+
T Consensus 808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred ECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 6655532211 1100 000000000100 01111122345666777766665 45666666677777777665433345
Q ss_pred hhhhhcCCCcCEEEccCCc
Q 044176 317 PVSFANMIVLESLDLSSNK 335 (362)
Q Consensus 317 ~~~~~~~~~L~~L~l~~n~ 335 (362)
|..+..++.|+.+++++|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 5556666666666666664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=7.9e-20 Score=184.73 Aligned_cols=329 Identities=15% Similarity=0.137 Sum_probs=222.0
Q ss_pred CCccccccCCCCcEEEcCCCccc-------cccc--CC-cCCCcEEEccCCcCCCCCCC-CCCCccEEEccCcccccCCc
Q 044176 10 ISKSDSQRWKSLTYLDISNNFLT-------QIEQ--HP-WKNITVLNLQNNTIQGTILV-PPPSTRAFLFSNNKLFGQIP 78 (362)
Q Consensus 10 ~~~~~~~~~~~L~~L~ls~~~i~-------~~~~--~~-~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~~~~~~~~~ 78 (362)
+...+|..|++|+.|.+..+... .++. .. .++|+.|++.++.+...... .+.+|+.|++.++.+. .++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence 55667888999999999765422 1222 12 24699999999877653322 3789999999999987 567
Q ss_pred ccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcC
Q 044176 79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC 158 (362)
Q Consensus 79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 158 (362)
..+..+++|+.|+++++.....+|. +..+ ++|++|++++|.....+|..+... ++|+.|++++|.....+|..+ ++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l-~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMA-TNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccC-CcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCCcC-CC
Confidence 7788999999999998764436764 5555 799999999987666788887765 899999999986544666554 78
Q ss_pred CCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC------CCchhHHhh
Q 044176 159 TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG------FLPRWIFVS 232 (362)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~ 232 (362)
++|+.|++++|......|.. ..+|++|++++|.+... |.. ..+++|+.|.+..+.... ..+......
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc-ccc---ccccccccccccccchhhccccccccchhhhhc
Confidence 99999999999765555542 46889999999987653 322 246788888887643211 111122334
Q ss_pred hhhhhhccccCCCccc-ccCCccccccceeeeecCc--chHhh--hhcccccEEeccCcccCCCcchhhcCCCCCcEEEc
Q 044176 233 LETMKNVDEKGSDGLY-MQGEEDYYQDSVTVTVKGR--DLVLK--RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNL 307 (362)
Q Consensus 233 ~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 307 (362)
.++|+.+++.++.... ++.....+.....+....+ ...++ ..+++|+.|++++|......|. ..++|+.|++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccccCEeEC
Confidence 5678888888774322 2222111222222222111 00111 1356788888887754333333 2367888999
Q ss_pred cCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176 308 SHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354 (362)
Q Consensus 308 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 354 (362)
++|.++ .+|.++..+++|+.|++++|+-...+|..+..++.|+.++
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 999888 6788899999999999998654445776666666665554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.7e-20 Score=177.34 Aligned_cols=255 Identities=24% Similarity=0.305 Sum_probs=174.5
Q ss_pred CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc
Q 044176 20 SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG 99 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 99 (362)
.-..|+++++.++.+|....++|+.|++.+|.++.. +..+++|+.|++++|.++. +|.. .++|+.|++++|.++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~L-P~lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~- 275 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT- 275 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCC-CCCCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-
Confidence 356788888888888875556788888888887753 3346778888888887773 3432 467778888888776
Q ss_pred cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc
Q 044176 100 TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179 (362)
Q Consensus 100 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 179 (362)
.+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.+++ +|.. ...|+.|++++|.+++ +|.
T Consensus 276 ~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-- 339 (788)
T PRK15387 276 HLPAL----PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-- 339 (788)
T ss_pred hhhhc----hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc--
Confidence 55542 246777788888776 45542 2567888888887763 3332 2356677777777643 332
Q ss_pred cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccc
Q 044176 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDS 259 (362)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 259 (362)
-..+|+.|++++|++...+. . .++|+.|++++|.+.. +|..
T Consensus 340 -lp~~Lq~LdLS~N~Ls~LP~-l-----p~~L~~L~Ls~N~L~~-LP~l------------------------------- 380 (788)
T PRK15387 340 -LPSGLQELSVSDNQLASLPT-L-----PSELYKLWAYNNRLTS-LPAL------------------------------- 380 (788)
T ss_pred -cccccceEecCCCccCCCCC-C-----Ccccceehhhcccccc-Cccc-------------------------------
Confidence 12467777777777765221 1 2456667777666652 2211
Q ss_pred eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccccc
Q 044176 260 VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR 339 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 339 (362)
+++|+.|++++|.+++ +|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .
T Consensus 381 ---------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~ 436 (788)
T PRK15387 381 ---------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-R 436 (788)
T ss_pred ---------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-c
Confidence 3468999999999984 4443 3689999999999984 5653 347889999999999 6
Q ss_pred CchhhhhhHhhhccCCCccccCC
Q 044176 340 IPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 340 ~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+|+.+..++.|+.+ ++++|.
T Consensus 437 LP~sl~~L~~L~~L---dLs~N~ 456 (788)
T PRK15387 437 LPESLIHLSSETTV---NLEGNP 456 (788)
T ss_pred cChHHhhccCCCeE---ECCCCC
Confidence 89888877766666 777774
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.6e-22 Score=170.24 Aligned_cols=277 Identities=20% Similarity=0.184 Sum_probs=166.9
Q ss_pred CCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc-ccccCcchhhhhcCCCCcc
Q 044176 60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN-NYLQGRIPDAFANGSCDLR 138 (362)
Q Consensus 60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~ 138 (362)
++....+.+..|.|+.+.+.+|..+++|+.|||++|+|+..-|..+..+ +++..|.+.+ |+|+ .+|...+..+..++
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 3444455555555555566666666666666666666663333333333 4555555544 5665 45555555555666
Q ss_pred EEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc----------ccccccccC
Q 044176 139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL----------CEVNIMLPF 208 (362)
Q Consensus 139 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----------~~~~~~~~~ 208 (362)
-|.+.-|++......+|..++.+..|.+.+|.+...-...+..+..++++.+..|.+.... .....++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 6666666666555666666666666666666653333335666666666666666532110 000011222
Q ss_pred CcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCccc
Q 044176 209 EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288 (362)
Q Consensus 209 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 288 (362)
+...-..+.+.++..+.+..+...+..+..--...+ ......+...+..+++|+.|++++|++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-----------------~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-----------------FPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-----------------CcCCcChHHHHhhcccceEeccCCCcc
Confidence 222333333333332222222222222111000000 011122233345589999999999999
Q ss_pred CCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCC
Q 044176 289 QGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFAR 355 (362)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~ 355 (362)
+++-..+|++...+++|+|..|++....-..|.++..|+.|+|.+|+|+-..|..|..+..|..+++
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 9888899999999999999999998766678999999999999999999999999998888887743
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=6.6e-20 Score=174.33 Aligned_cols=247 Identities=26% Similarity=0.361 Sum_probs=156.1
Q ss_pred CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176 19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS 98 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 98 (362)
.+...|+++++.++.+|....++++.|++++|.++.......++|++|++++|.++ .+|..+. .+|+.|++++|.+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 34667788877777777655567778888877777544333567777777777776 3454442 46777788877777
Q ss_pred ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176 99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178 (362)
Q Consensus 99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 178 (362)
.+|..+. .+|+.|++++|++. .+|..+. ++|++|++++|.++. +|..+. ..|+.|++++|.+.. +|..
T Consensus 255 -~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~ 322 (754)
T PRK15370 255 -ELPERLP---SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPET 322 (754)
T ss_pred -cCChhHh---CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcc
Confidence 6666543 36777777777776 4565432 467777777777763 343332 356777777777743 3332
Q ss_pred ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcccccc
Q 044176 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258 (362)
Q Consensus 179 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 258 (362)
+ .++|+.|++++|.++.. +... .++|+.|++++|.+. .+|..+
T Consensus 323 l--~~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L~-~LP~~l----------------------------- 365 (754)
T PRK15370 323 L--PPGLKTLEAGENALTSL-PASL----PPELQVLDVSKNQIT-VLPETL----------------------------- 365 (754)
T ss_pred c--cccceeccccCCccccC-Chhh----cCcccEEECCCCCCC-cCChhh-----------------------------
Confidence 2 25677777777776652 2211 257777777777765 333321
Q ss_pred ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhh----hcCCCcCEEEccCC
Q 044176 259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF----ANMIVLESLDLSSN 334 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~----~~~~~L~~L~l~~n 334 (362)
+++|+.|++++|+++ .+|..+. ..|+.|++++|++. .+|..+ ..++.+..+++.+|
T Consensus 366 ----------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 366 ----------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred ----------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCC
Confidence 345777777777776 3444432 35777777777776 344433 34467777777777
Q ss_pred ccc
Q 044176 335 KLH 337 (362)
Q Consensus 335 ~~~ 337 (362)
+++
T Consensus 426 pls 428 (754)
T PRK15370 426 PFS 428 (754)
T ss_pred Ccc
Confidence 776
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-22 Score=186.52 Aligned_cols=282 Identities=25% Similarity=0.336 Sum_probs=175.1
Q ss_pred EEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCC
Q 044176 23 YLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP 102 (362)
Q Consensus 23 ~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 102 (362)
.|++++|.++......+++|+.+....|++.... ..-++++.|+.++|.+....+. ....+|++++++.++++ .+|
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~-~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp 257 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE-ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP 257 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhhhcccceEE-ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch
Confidence 4778877777555556666666666655544211 1134566666666666522211 12346666666666666 566
Q ss_pred CCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh----
Q 044176 103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW---- 178 (362)
Q Consensus 103 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 178 (362)
+.++.+ .+|+.+++.+|++. .+|..+... .+|+.+.+..|.+. .+|......+.|++|++..|++.......
T Consensus 258 ~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~-~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 258 EWIGAC-ANLEALNANHNRLV-ALPLRISRI-TSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL 333 (1081)
T ss_pred HHHHhc-ccceEecccchhHH-hhHHHHhhh-hhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhh
Confidence 555555 46666666666664 555555543 55666666666555 44555555566666666665553221111
Q ss_pred ---------------------ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176 179 ---------------------LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237 (362)
Q Consensus 179 ---------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 237 (362)
-..++.|+.|++.+|.+++.. +..+..+++|+.|++++|++. .+|...+.+++.|+
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE 410 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCCHHHHhchHHhH
Confidence 112345777888888887633 334578899999999999988 67777788888888
Q ss_pred hccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc-
Q 044176 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI- 316 (362)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~- 316 (362)
+|+++++....+.. -...++.|+.|...+|.+. ..| .+..++.|+.+|++.|.++...
T Consensus 411 eL~LSGNkL~~Lp~-------------------tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 411 ELNLSGNKLTTLPD-------------------TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred HHhcccchhhhhhH-------------------HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 88888876443331 1122566778888778776 445 5678888888888888887432
Q ss_pred hhhhhcCCCcCEEEccCCccc
Q 044176 317 PVSFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 317 ~~~~~~~~~L~~L~l~~n~~~ 337 (362)
+.... -|.|++||++||.-.
T Consensus 470 ~~~~p-~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 470 PEALP-SPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhCC-CcccceeeccCCccc
Confidence 33222 278888888888743
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.9e-20 Score=176.70 Aligned_cols=240 Identities=23% Similarity=0.348 Sum_probs=181.2
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPS 80 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 80 (362)
|+++.++ .+|..+. ++++.|++++|.|+.++...+++|+.|++++|.++.......++|+.|++++|.+. .+|..
T Consensus 185 L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~ 259 (754)
T PRK15370 185 LKILGLT-TIPACIP---EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPER 259 (754)
T ss_pred eCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChh
Confidence 4567888 7887654 67999999999999999877789999999999988644333568999999999998 56666
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (362)
+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++. +|..+ .++
T Consensus 260 l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~s 326 (754)
T PRK15370 260 LP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPG 326 (754)
T ss_pred Hh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--ccc
Confidence 53 58999999999998 7887654 47999999999998 5665543 478999999999984 45433 368
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176 161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240 (362)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 240 (362)
|+.|++++|.++. +|..+ .++|+.|++++|++... +... .++|+.|++++|.+. .+|...
T Consensus 327 L~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~L-P~~l----p~~L~~LdLs~N~Lt-~LP~~l----------- 386 (754)
T PRK15370 327 LKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVL-PETL----PPTITTLDVSRNALT-NLPENL----------- 386 (754)
T ss_pred ceeccccCCcccc-CChhh--cCcccEEECCCCCCCcC-Chhh----cCCcCEEECCCCcCC-CCCHhH-----------
Confidence 9999999999865 45444 37999999999998753 3222 368999999999988 445432
Q ss_pred ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcch----hhcCCCCCcEEEccCCcCc
Q 044176 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ----VLGDFKSLIVLNLSHNGLT 313 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~i~ 313 (362)
...|+.|++++|+++ .+|. ..+.++.+..+++.+|.+.
T Consensus 387 ----------------------------------~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 ----------------------------------PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ----------------------------------HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 123556667777665 3333 2334466777777777766
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=7.1e-20 Score=161.50 Aligned_cols=94 Identities=29% Similarity=0.344 Sum_probs=41.6
Q ss_pred ccccCCCCCCEEEcccCcccccCCCCccccc--ccccEEEcccccccCc----chhhhhcCCCCccEEeccCCcccCC--
Q 044176 79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGR----IPDAFANGSCDLRSLGLNSNKLRGS-- 150 (362)
Q Consensus 79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~--~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-- 150 (362)
..+..+++|++|++++|.+.+..+..+..+. ++|++|++++|++.+. +...+....++|++|++++|.+++.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 3455566666666666665432222222221 1266666666555421 1111111114455555555555421
Q ss_pred --CchhhhcCCCCcEEEccCCCCC
Q 044176 151 --FPRYLADCTGLEVVNVGNNMIG 172 (362)
Q Consensus 151 --~~~~~~~l~~L~~L~l~~~~~~ 172 (362)
.+..+..++.|+.|++++|.+.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCc
Confidence 1222333445555555555443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=2.3e-19 Score=158.24 Aligned_cols=240 Identities=22% Similarity=0.203 Sum_probs=143.3
Q ss_pred CccEEEccCccccc----CCcccccCCCCCCEEEcccCcccc------cCCCCcccccccccEEEcccccccCcchhhhh
Q 044176 62 STRAFLFSNNKLFG----QIPPSIYSLSSLEYISLSHNNLSG------TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFA 131 (362)
Q Consensus 62 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~------~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 131 (362)
.|+.++++++.+.. .++..+...+.+++++++++.+.. .++..+... ++|+.|++++|.+....+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHHHH
Confidence 34555555554422 233445556667777777776651 122233333 5777888877777644444443
Q ss_pred cCC--CCccEEeccCCcccCC----CchhhhcC-CCCcEEEccCCCCCCC----cchhccCCCCCCeEEccCCcCCCccc
Q 044176 132 NGS--CDLRSLGLNSNKLRGS----FPRYLADC-TGLEVVNVGNNMIGDT----FPSWLGSLPGLKILVLRSNRFYGPLC 200 (362)
Q Consensus 132 ~~~--~~L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~ 200 (362)
... ++|++|++++|.+.+. +...+..+ ++|+.|++++|.+++. .+..+..+++|++|++++|.+.+...
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 331 2377888877776532 12234445 6777777777776532 22345556677777777777664221
Q ss_pred cc--cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176 201 EV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF 278 (362)
Q Consensus 201 ~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 278 (362)
.. .++..+++|++|++++|.+.+.....+... ...+++|
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~---------------------------------------~~~~~~L 223 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAET---------------------------------------LASLKSL 223 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH---------------------------------------hcccCCC
Confidence 11 123344577777777777653222111111 1126789
Q ss_pred cEEeccCcccCCCcchhhc-C----CCCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCCcccccCc
Q 044176 279 TTIDLSSNQFQGEIPQVLG-D----FKSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSNKLHGRIP 341 (362)
Q Consensus 279 ~~L~l~~n~~~~~~~~~~~-~----~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~ 341 (362)
+.|++++|.+++.....+. . .+.|+.|++++|.+++ .++..+..++.|+++++++|.++....
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 9999999998864333332 2 3789999999999873 334556777899999999999996533
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=9.7e-20 Score=153.56 Aligned_cols=146 Identities=20% Similarity=0.190 Sum_probs=114.3
Q ss_pred EEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc-Cccc
Q 044176 23 YLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH-NNLS 98 (362)
Q Consensus 23 ~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~ 98 (362)
.++.++..++.+|...-+....++|+.|+|+.. .|..+++|+.|++++|.|+.+.|++|.+++.+.+|-+-+ |+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 467788888888887777888899999988754 455588899999999999999999999999988876666 8998
Q ss_pred ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCC
Q 044176 99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170 (362)
Q Consensus 99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (362)
.+|...+.....++.|.+.-|++.-.....+.. ++++..|.+.+|.+.......|..+..++.+.+..|.
T Consensus 130 -~l~k~~F~gL~slqrLllNan~i~Cir~~al~d-L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 -DLPKGAFGGLSSLQRLLLNANHINCIRQDALRD-LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred -hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH-hhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 888877666578888888888887444445554 4889999999998874444477777777777776665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.9e-17 Score=124.49 Aligned_cols=149 Identities=30% Similarity=0.415 Sum_probs=102.1
Q ss_pred CCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC--CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176 18 WKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI--LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS 93 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 93 (362)
+.+++.|.+|.|.++.+++ ..+.+|+.|++.+|+++... ...+++|+.|+++-|.+. ..|..|+.++-|+.||+.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3788899999999999988 47888999999888887532 333666666666666655 566667777777777777
Q ss_pred cCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC
Q 044176 94 HNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171 (362)
Q Consensus 94 ~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (362)
.|++.. .+|..++.+ ..|+.|+++.|.+. .+|..+.+. ++|+.|.+++|.+. ..|..++.+++|+.|.+.+|++
T Consensus 111 ynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~l-t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKL-TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhh-cceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 666653 456666555 46666666666665 566665554 66666666666655 4566666666666666666666
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=3.7e-17 Score=122.90 Aligned_cols=83 Identities=30% Similarity=0.519 Sum_probs=54.1
Q ss_pred ccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEE
Q 044176 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILV 189 (362)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 189 (362)
..+..|.+++|.++ .+|..++.. .+|+.|++++|++. ..|..+..+++|+.|+++-|++ ...|+.|+.+|.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhh
Confidence 35666666666666 556666654 56777777777776 5666677777777777766665 45666666666666666
Q ss_pred ccCCcCC
Q 044176 190 LRSNRFY 196 (362)
Q Consensus 190 l~~n~~~ 196 (362)
+..|++.
T Consensus 109 ltynnl~ 115 (264)
T KOG0617|consen 109 LTYNNLN 115 (264)
T ss_pred ccccccc
Confidence 6666554
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-14 Score=119.34 Aligned_cols=249 Identities=23% Similarity=0.228 Sum_probs=149.2
Q ss_pred CcCCCcEEEccCCcCCC-------CCCCCCCCccEEEccCccc---ccCCc-------ccccCCCCCCEEEcccCccccc
Q 044176 38 PWKNITVLNLQNNTIQG-------TILVPPPSTRAFLFSNNKL---FGQIP-------PSIYSLSSLEYISLSHNNLSGT 100 (362)
Q Consensus 38 ~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~L~~~~~~~~ 100 (362)
.+..++.+++++|.+.. ......+.|+..++++--. ...+| +++-.+++|++|+||+|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34456666666665542 1122234555555554311 11222 2334556777777777777643
Q ss_pred CCCCcccc---cccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc--
Q 044176 101 IPPCLGNF---STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF-- 175 (362)
Q Consensus 101 ~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-- 175 (362)
.+..+..+ ...|++|.+.+|.+...-...+.. .|..+. .....+.-+.|+.+...+|++.+..
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence 33332222 135666666666654211111111 122211 1112234577888888888875432
Q ss_pred --chhccCCCCCCeEEccCCcCCCccc--cccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC
Q 044176 176 --PSWLGSLPGLKILVLRSNRFYGPLC--EVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG 251 (362)
Q Consensus 176 --~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 251 (362)
...++..+.|+.+.+..|.+..... ...++..+++|+.||+.+|-++..-.......++.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s---------------- 239 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS---------------- 239 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc----------------
Confidence 3456678899999999998864333 22367889999999999998874443332222221
Q ss_pred CccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhh-----cCCCCCcEEEccCCcCcc----Cchhhhhc
Q 044176 252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL-----GDFKSLIVLNLSHNGLTG----SIPVSFAN 322 (362)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~----~~~~~~~~ 322 (362)
+++|+.|++++|.+.......+ ...+.|+.|.+++|.|+. .+...+..
T Consensus 240 -----------------------~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 240 -----------------------WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred -----------------------cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 5678999999999976655443 347899999999999983 23344566
Q ss_pred CCCcCEEEccCCccc
Q 044176 323 MIVLESLDLSSNKLH 337 (362)
Q Consensus 323 ~~~L~~L~l~~n~~~ 337 (362)
.|.|.+|+|++|++.
T Consensus 297 k~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRLG 311 (382)
T ss_pred chhhHHhcCCccccc
Confidence 899999999999984
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=1.6e-12 Score=108.82 Aligned_cols=185 Identities=22% Similarity=0.223 Sum_probs=117.5
Q ss_pred CCccEEeccCCcccCCCchh----hhcCCCCcEEEccCCCCCCCcchh-------------ccCCCCCCeEEccCCcCCC
Q 044176 135 CDLRSLGLNSNKLRGSFPRY----LADCTGLEVVNVGNNMIGDTFPSW-------------LGSLPGLKILVLRSNRFYG 197 (362)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~n~~~~ 197 (362)
+.|+++++|+|.+....+.. +.++..|++|.+.+|.+....... .+.-+.|+.+....|.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 56777777777665433333 335667777777777663221111 2234677777777777654
Q ss_pred ccccc--cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176 198 PLCEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII 275 (362)
Q Consensus 198 ~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (362)
..... .++...+.|+.+.+..|.|..+-....... +..+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea---------------------------------------l~~~ 212 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA---------------------------------------LEHC 212 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHH---------------------------------------HHhC
Confidence 32222 244556777777777777763322111111 2238
Q ss_pred ccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccCchhhh-----hcCCCcCEEEccCCcccccCch----
Q 044176 276 TIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSIPVSF-----ANMIVLESLDLSSNKLHGRIPE---- 342 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~---- 342 (362)
++|++||+++|.++.+. ...++.+++|++|++++|.+......+| ...|+|+.|.+.+|.|+.....
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 89999999999998653 4456778899999999999987665554 4478999999999999864322
Q ss_pred hhhhhHhhhccCCCccccC
Q 044176 343 QFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 343 ~~~~l~~L~~l~~~~l~~n 361 (362)
.+...+.|..| ++.+|
T Consensus 293 ~~~ek~dL~kL---nLngN 308 (382)
T KOG1909|consen 293 CMAEKPDLEKL---NLNGN 308 (382)
T ss_pred HHhcchhhHHh---cCCcc
Confidence 23334445554 66665
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=1.5e-11 Score=96.42 Aligned_cols=103 Identities=26% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCc
Q 044176 84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLE 162 (362)
Q Consensus 84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~ 162 (362)
+.+|+.|++++|.++ .+. .+..+ +.|++|++++|+++ .++..+...+++|++|++++|.|.+.. -..+..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~-~l~-~l~~L-~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KLE-GLPGL-PRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCc-ccc-CccCh-hhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 334444444444444 222 22222 34444444444444 222222222244555555554444211 12344455555
Q ss_pred EEEccCCCCCCC---cchhccCCCCCCeEEc
Q 044176 163 VVNVGNNMIGDT---FPSWLGSLPGLKILVL 190 (362)
Q Consensus 163 ~L~l~~~~~~~~---~~~~~~~~~~L~~L~l 190 (362)
.|++.+|+++.. -...+..+|+|+.||-
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 555555554322 1112345566665553
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.6e-12 Score=107.14 Aligned_cols=211 Identities=20% Similarity=0.209 Sum_probs=113.4
Q ss_pred cCCCCCCEEEcccCcccccCCC-CcccccccccEEEcccccccCc-chhhhhcCCCCccEEeccCCcccCCCch-hhhcC
Q 044176 82 YSLSSLEYISLSHNNLSGTIPP-CLGNFSTQLTILHLNNNYLQGR-IPDAFANGSCDLRSLGLNSNKLRGSFPR-YLADC 158 (362)
Q Consensus 82 ~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l 158 (362)
+++++|++..|.++.+. ..+. ...+.+++++.||+++|-+..- .-..++..+|+|+.|+++.|.+...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45667777777777775 3332 2233336777777777765421 1234455567777777777766532211 22245
Q ss_pred CCCcEEEccCCCCCCCcch-hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176 159 TGLEVVNVGNNMIGDTFPS-WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237 (362)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 237 (362)
+.|+.|.++.|.++..... ....+|+|..|++..|.... .......-+..|++|++++|.+...........
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~----- 269 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT----- 269 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCccccccccccccc-----
Confidence 6677777777766432222 23456777777777664211 111122334566777777766553332222222
Q ss_pred hccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCc-chh-----hcCCCCCcEEEccCCc
Q 044176 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI-PQV-----LGDFKSLIVLNLSHNG 311 (362)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~-----~~~~~~L~~L~l~~n~ 311 (362)
++.|+.|+++.|.+.+.- |+. -..+++|+.|++..|+
T Consensus 270 -------------------------------------l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 270 -------------------------------------LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred -------------------------------------ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 455566666666554321 111 2356667777777777
Q ss_pred Ccc-CchhhhhcCCCcCEEEccCCccc
Q 044176 312 LTG-SIPVSFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 312 i~~-~~~~~~~~~~~L~~L~l~~n~~~ 337 (362)
|.+ .....+..+++|+.|.+..|+++
T Consensus 313 I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 313 IRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccchhhccchhhhhhccccccc
Confidence 641 11123455566666766666655
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.2e-12 Score=108.30 Aligned_cols=182 Identities=21% Similarity=0.200 Sum_probs=99.7
Q ss_pred ccccCCCCcEEEcCCCccccccc-----CCcCCCcEEEccCCcCCCCC----CCCCCCccEEEccCccccc-CCcccccC
Q 044176 14 DSQRWKSLTYLDISNNFLTQIEQ-----HPWKNITVLNLQNNTIQGTI----LVPPPSTRAFLFSNNKLFG-QIPPSIYS 83 (362)
Q Consensus 14 ~~~~~~~L~~L~ls~~~i~~~~~-----~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~~~~~~-~~~~~~~~ 83 (362)
....|++++.||+|+|-+..+.+ ..+|+|+.|+++.|.+.... -..+++|+.|.++.|+++- .+......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 44456777777777776665544 46777777777777654211 1126777777777777652 12223445
Q ss_pred CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchh-hhhcCCCCccEEeccCCcccCCC-chh-----hh
Q 044176 84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSNKLRGSF-PRY-----LA 156 (362)
Q Consensus 84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~ 156 (362)
+|.|+.|+|..|.......... ..++.|+.|++++|++-+ .+. .....++.|..|+++.+.+.+.- |.. ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 6777777777774221111111 122457777777776542 221 11122366777777776665331 111 23
Q ss_pred cCCCCcEEEccCCCCCCCc-chhccCCCCCCeEEccCCcCCC
Q 044176 157 DCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYG 197 (362)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~ 197 (362)
.+++|+.|++..|++.++. ...+..+++|+.+.+..|.++.
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 4567777777777664331 1223345566666666665543
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=2.6e-12 Score=114.08 Aligned_cols=190 Identities=21% Similarity=0.336 Sum_probs=115.6
Q ss_pred CcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC--CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176 21 LTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI--LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN 96 (362)
Q Consensus 21 L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 96 (362)
....|++.|++..++. ..|..|+.+.+..|.+.... ...+..|+.++++.|++. ..|..++.+ -|+.|.+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCc
Confidence 3446677777777666 35566666666666555332 233566666777777766 455555543 36667777777
Q ss_pred ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176 97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (362)
++ .+|+.++ ....|..||.+.|.+. .+|..+... .+|+.|.+++|++. .+|+.+. .-.|..||++.|++ ..+|
T Consensus 155 l~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l-~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki-s~iP 227 (722)
T KOG0532|consen 155 LT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYL-TSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI-SYLP 227 (722)
T ss_pred cc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhH-HHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce-eecc
Confidence 76 6777766 3356777777777766 566666554 56677777777666 4555555 33567777777777 4566
Q ss_pred hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN 219 (362)
Q Consensus 177 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 219 (362)
-.|.+|..|++|.|.+|++...+.....-+...=.++|+..-+
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 6677777777777777777653333322222222345555444
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=8.6e-11 Score=106.70 Aligned_cols=195 Identities=28% Similarity=0.414 Sum_probs=150.0
Q ss_pred EEEcCCCcc-ccccc-CCcCCCcEEEccCCcCCCCCCCC--CC-CccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 23 YLDISNNFL-TQIEQ-HPWKNITVLNLQNNTIQGTILVP--PP-STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 23 ~L~ls~~~i-~~~~~-~~~~~L~~L~l~~n~~~~~~~~~--~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
.++.+.+++ ..... ..++.++.|++.+|.+....... .+ +|+.|++++|.+. .+|..+..+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence 577777776 33333 35578999999999988766544 42 8999999999998 4556788899999999999999
Q ss_pred cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcch
Q 044176 98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS 177 (362)
Q Consensus 98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (362)
. .+|...+.. +.|+.|++++|.+. .+|...... ..|+++.+++|.+. ..+..+..+..+..+.+.+|++.. .+.
T Consensus 176 ~-~l~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 176 S-DLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred h-hhhhhhhhh-hhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 8 777766455 68999999999998 667654322 46999999999644 456678888888888888888743 256
Q ss_pred hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228 (362)
Q Consensus 178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 228 (362)
.++.++++++|++++|.+..... +....+++.++++++.+....+..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceecccccccccccc----ccccCccCEEeccCccccccchhh
Confidence 67888899999999999876443 377889999999999887555543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.6e-10 Score=104.93 Aligned_cols=169 Identities=33% Similarity=0.465 Sum_probs=68.9
Q ss_pred CCcEEEcCCCcccccccC--CcC-CCcEEEccCCcCCCC--CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176 20 SLTYLDISNNFLTQIEQH--PWK-NITVLNLQNNTIQGT--ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH 94 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~~--~~~-~L~~L~l~~n~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 94 (362)
.++.+++.++.++++++. .++ +|+.|++++|++... ....++.|+.|++++|.+. .+|...+..+.|+.|++++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccC
Confidence 344444444444444441 221 444444444444443 2333444444444444444 2222222344444444444
Q ss_pred CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176 95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174 (362)
Q Consensus 95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (362)
|++. .+|...... ..|+++++++|++. ..+..+... ..+..+.+.++++. ..+..++.++.++.|++++|.+...
T Consensus 196 N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 196 NKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred Cccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-eccchhccccccceecccccccccc
Confidence 4444 444332222 23444444444321 122222222 33444444444433 1233344444444444444444332
Q ss_pred cchhccCCCCCCeEEccCCcCC
Q 044176 175 FPSWLGSLPGLKILVLRSNRFY 196 (362)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~n~~~ 196 (362)
.+ ++...+++.++++++.+.
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cc--ccccCccCEEeccCcccc
Confidence 22 344444444444444443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=2.1e-10 Score=89.96 Aligned_cols=124 Identities=23% Similarity=0.193 Sum_probs=35.7
Q ss_pred CCcEEEccCCcCCCCCCC--CCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176 41 NITVLNLQNNTIQGTILV--PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118 (362)
Q Consensus 41 ~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~ 118 (362)
++++|++++|.|+...-. .+.+|+.|++++|.+... +.+..+++|++|++++|+++ .+.+.+....++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECc
Confidence 344444444444432111 234455555555555432 23555666666666666665 4443332222566666666
Q ss_pred cccccCcchhhhhcCCCCccEEeccCCcccCCC---chhhhcCCCCcEEEcc
Q 044176 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF---PRYLADCTGLEVVNVG 167 (362)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~ 167 (362)
+|++.....-.....+++|+.|++.+|+++... ...+..+|+|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 666543211111122366777777777666321 1245567888887643
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4.8e-11 Score=98.27 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=35.8
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccccc-CchhhhhhHhhhcc
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR-IPEQFVDAEICSSF 353 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l 353 (362)
+++|+.||+++|.++ ....+-..+-+.+.|.|++|.|.. ..++.++-+|..||+++|+|.+. ....++++|+|..+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 344555555555554 222233344455555555555542 13445555555555555555531 11234445555444
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=8.4e-12 Score=110.91 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=155.2
Q ss_pred EEEcCCCcccccccC----CcCCCcEEEccCCcCCCCCC--CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176 23 YLDISNNFLTQIEQH----PWKNITVLNLQNNTIQGTIL--VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN 96 (362)
Q Consensus 23 ~L~ls~~~i~~~~~~----~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 96 (362)
.|.+++..+..++.. .+..-...|++.|.+..... ..+..|+.+.+.+|.+- .+|.+++++..|.+++|+.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 366677777776653 33445677888887665332 23778889999999887 788999999999999999999
Q ss_pred ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176 97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (362)
++ .+|..++.+ .|+.|.+++|+++ .+|..+. ..+.|..|+.+.|.+. ..|..++.+.+|+.|.+..|++. .+|
T Consensus 133 lS-~lp~~lC~l--pLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp 205 (722)
T KOG0532|consen 133 LS-HLPDGLCDL--PLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLP 205 (722)
T ss_pred hh-cCChhhhcC--cceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCC
Confidence 99 999999987 4999999999998 7898888 5689999999999998 67888999999999999999984 466
Q ss_pred hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCC
Q 044176 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF 224 (362)
Q Consensus 177 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 224 (362)
..+. .-.|..||++.|++...+.. |.+|+.|++|-+..|.+.+.
T Consensus 206 ~El~-~LpLi~lDfScNkis~iPv~---fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 206 EELC-SLPLIRLDFSCNKISYLPVD---FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHHh-CCceeeeecccCceeecchh---hhhhhhheeeeeccCCCCCC
Confidence 6676 45688999999998764333 38899999999999999844
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=1.5e-10 Score=74.67 Aligned_cols=61 Identities=36% Similarity=0.520 Sum_probs=53.9
Q ss_pred ccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcc
Q 044176 276 TIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 336 (362)
|+|+.|++++|+++...+..|.++++|+.|++++|.+....+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999877777889999999999999999977778899999999999999875
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=3.4e-10 Score=110.35 Aligned_cols=287 Identities=23% Similarity=0.289 Sum_probs=159.4
Q ss_pred CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCc--C---CCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEE
Q 044176 18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNT--I---QGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYIS 91 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~--~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 91 (362)
+...+...+-++.+..++. ..+++|+.|-+..|. + ...++..+|.|+.|++++|.-.+..|..++++.+|++|+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3567777777887777766 356678888887774 2 233466688888888888777677888888888888888
Q ss_pred cccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCccc--CCCchhhhcCCCCcEEEccCC
Q 044176 92 LSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR--GSFPRYLADCTGLEVVNVGNN 169 (362)
Q Consensus 92 L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~ 169 (362)
++++.+. .+|.++..+ ..|.+|++..+......|. +...+++|++|.+...... ......+..+..|+.+.+...
T Consensus 602 L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccCCCcc-ccchHHHHH-Hhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 8888888 888888888 5888888887664433333 3333478888887765422 112223344445555444322
Q ss_pred CCCCCcchhccCCCCCC----eEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh----HHhh-hhhhhhcc
Q 044176 170 MIGDTFPSWLGSLPGLK----ILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW----IFVS-LETMKNVD 240 (362)
Q Consensus 170 ~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~-~~~l~~l~ 240 (362)
.. .+...+..++.|. .+.+..+.. ......+..+.+|+.|.+.++.+......+ .... ++++..+.
T Consensus 679 s~--~~~e~l~~~~~L~~~~~~l~~~~~~~---~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 679 SV--LLLEDLLGMTRLRSLLQSLSIEGCSK---RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred hh--HhHhhhhhhHHHHHHhHhhhhccccc---ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 21 0111122233332 222222111 112223466778888888887765322211 0000 11222222
Q ss_pred ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC-chhh
Q 044176 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS-IPVS 319 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~ 319 (362)
...+.... ........|+|+.|.+..|...+.+++....+..++.+.+..+.+.+. ....
T Consensus 754 ~~~~~~~r-------------------~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~ 814 (889)
T KOG4658|consen 754 ILNCHMLR-------------------DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS 814 (889)
T ss_pred hhcccccc-------------------ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec
Confidence 22211100 001112367899999998877666665555556666555555555433 2233
Q ss_pred hhcCCCcCEEEc
Q 044176 320 FANMIVLESLDL 331 (362)
Q Consensus 320 ~~~~~~L~~L~l 331 (362)
..+++++..+.+
T Consensus 815 l~~l~~i~~~~l 826 (889)
T KOG4658|consen 815 LGGLPQLYWLPL 826 (889)
T ss_pred CCCCceeEeccc
Confidence 334444433333
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=5.2e-11 Score=98.07 Aligned_cols=137 Identities=24% Similarity=0.273 Sum_probs=105.0
Q ss_pred cCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC
Q 044176 82 YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL 161 (362)
Q Consensus 82 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (362)
--|+.|+++||++|.|+ .+.+++ ++.|.++.|++++|.+. .+.. ++. +++|+.|++++|.++ ...++-..+.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v~n-La~-L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TVQN-LAE-LPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-eehh-hhh-cccceEeecccchhH-hhhhhHhhhcCE
Confidence 34778999999999998 777766 44489999999999987 3333 443 489999999999887 555666778889
Q ss_pred cEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCch
Q 044176 162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPR 227 (362)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 227 (362)
+.|.+++|.+.+. ..++++-+|..||+.+|++.. ......++.+|+|+++.+.+|.+.+...+
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCccccchH
Confidence 9999999988432 446677788999999998864 23344568899999999999998854443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.6e-09 Score=105.69 Aligned_cols=279 Identities=19% Similarity=0.201 Sum_probs=160.9
Q ss_pred CcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcc--cccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE
Q 044176 38 PWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNK--LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114 (362)
Q Consensus 38 ~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 114 (362)
.....+++.+-+|.+.... ....++|++|-+..|. +....+..|..++.|++|||++|.-.+.+|..++.+. +|++
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-hhhc
Confidence 4556788888777776433 3336789999999886 5545555678899999999998766668999999984 8999
Q ss_pred EEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC--CCCcchhccCCCCCCeEEccC
Q 044176 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI--GDTFPSWLGSLPGLKILVLRS 192 (362)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~ 192 (362)
|+++++.+. .+|..+.+. ..|.+|++..+.....++.....+.+|++|.+..... +......+..+.+|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHHH-HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999988 899998886 7999999998765545566777789999998866542 222223344555555555433
Q ss_pred CcCCCccccccccccCCccc----EEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcc
Q 044176 193 NRFYGPLCEVNIMLPFEALR----IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRD 268 (362)
Q Consensus 193 n~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (362)
... .....+..+..|+ .+.+.++... ........+.+++.|.+..+....... .+ .....
T Consensus 678 ~s~----~~~e~l~~~~~L~~~~~~l~~~~~~~~--~~~~~~~~l~~L~~L~i~~~~~~e~~~------~~----~~~~~ 741 (889)
T KOG4658|consen 678 SSV----LLLEDLLGMTRLRSLLQSLSIEGCSKR--TLISSLGSLGNLEELSILDCGISEIVI------EW----EESLI 741 (889)
T ss_pred chh----HhHhhhhhhHHHHHHhHhhhhcccccc--eeecccccccCcceEEEEcCCCchhhc------cc----ccccc
Confidence 221 0001112222222 2222111111 111123445555555555554321110 00 00000
Q ss_pred hHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 269 LVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 269 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
.. ..++++..+.+.++..- ..+.+.-..++|+.|++..+...+.+.+....+..++.+.+..+.+.+
T Consensus 742 ~~--~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 742 VL--LCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hh--hhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 00 01222333333333322 122333456788888888877665555666666666665555555554
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.87 E-value=7.8e-09 Score=98.59 Aligned_cols=107 Identities=25% Similarity=0.426 Sum_probs=77.8
Q ss_pred CCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEc
Q 044176 87 LEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV 166 (362)
Q Consensus 87 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 166 (362)
++.|+|++|.+.+.+|..+..+ ++|+.|++++|.+.+.+|..+... ++|+.|++++|.+.+.+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 6677777777777777777766 577777777777776777776654 77788888888777777777777788888888
Q ss_pred cCCCCCCCcchhccCC-CCCCeEEccCCcC
Q 044176 167 GNNMIGDTFPSWLGSL-PGLKILVLRSNRF 195 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~ 195 (362)
++|.+.+..|..++.. .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 8777777777666543 3556677777654
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=9.2e-09 Score=98.11 Aligned_cols=108 Identities=35% Similarity=0.505 Sum_probs=96.9
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
.++.|++++|.+.+.+|..++++++|+.|+|++|.+.+.+|..+..+ ++|+.|++++|.+.+.+|..+..+ ++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L-~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQL-TSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcC-CCCCEEE
Confidence 47889999999999999999999999999999999998899888887 799999999999998899988875 8999999
Q ss_pred ccCCcccCCCchhhhcC-CCCcEEEccCCCC
Q 044176 142 LNSNKLRGSFPRYLADC-TGLEVVNVGNNMI 171 (362)
Q Consensus 142 l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 171 (362)
+++|.+.+.+|..+... .++..+++.+|..
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcc
Confidence 99999999999888763 5677888888864
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.4e-09 Score=70.13 Aligned_cols=60 Identities=40% Similarity=0.482 Sum_probs=53.9
Q ss_pred CCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 300 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
|+|++|++++|+++...+..|..+++|++|++++|+++...|+.|..+++|+++ ++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L---~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL---DLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE---EETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE---eCcCCc
Confidence 578999999999997777889999999999999999998888899999999998 777774
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.4e-10 Score=94.03 Aligned_cols=182 Identities=19% Similarity=0.134 Sum_probs=97.7
Q ss_pred CccEEeccCCcccCC-CchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEE
Q 044176 136 DLRSLGLNSNKLRGS-FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII 214 (362)
Q Consensus 136 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 214 (362)
.++++++++..++.. ....+..+.+|+.|.+.++.+.+-+...+.+-.+|+.++++.+.-.........+..|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 366666666655521 2234455566666666666665555555556666666666655332222222233455556666
Q ss_pred eccCCcccCCCchhHHhh-hhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcc-cCCCc
Q 044176 215 DLSHNEFTGFLPRWIFVS-LETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ-FQGEI 292 (362)
Q Consensus 215 ~l~~n~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~ 292 (362)
+++.+....+.-.....+ -+.+..+.++++..... ......+..-+|+|..|||++|. ++...
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~---------------~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ---------------KSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh---------------hhHHHHHHHhCCceeeeccccccccCchH
Confidence 665555432221111111 12333444443321111 11112223337888888888874 45445
Q ss_pred chhhcCCCCCcEEEccCCcCccCchhh---hhcCCCcCEEEccCC
Q 044176 293 PQVLGDFKSLIVLNLSHNGLTGSIPVS---FANMIVLESLDLSSN 334 (362)
Q Consensus 293 ~~~~~~~~~L~~L~l~~n~i~~~~~~~---~~~~~~L~~L~l~~n 334 (362)
...+-+++-|+.|.++.|+.. .|.. +...|+|.+||+.++
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 556777888888888888753 4444 466788888888775
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.5e-10 Score=91.18 Aligned_cols=223 Identities=17% Similarity=0.167 Sum_probs=147.7
Q ss_pred cEEEcccccccCcchhhhhcCCCCccEEeccCCcccCC-Cchhhhc-CCCCcEEEccCCCCCCCcc-hhccCCCCCCeEE
Q 044176 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGS-FPRYLAD-CTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILV 189 (362)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~-l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 189 (362)
+++|+.+-++.......+.. .....+.+........ ..+.+.- -..|+++|+++..++.... ..+..|.+|+.+.
T Consensus 139 ~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lS 216 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLGRLLS--RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLS 216 (419)
T ss_pred eeeccCCCccChhHHHHHHh--CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcc
Confidence 55666665554111122221 2455555554332211 1122222 2469999999988754322 3456789999999
Q ss_pred ccCCcCCCccccccccccCCcccEEeccCCc-ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcc
Q 044176 190 LRSNRFYGPLCEVNIMLPFEALRIIDLSHNE-FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRD 268 (362)
Q Consensus 190 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (362)
+.++++.+.+. ..+++..+|+.++++.+. ++......++..|+.|.++.+.+|..++-. ..
T Consensus 217 lEg~~LdD~I~--~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~----------------Vt 278 (419)
T KOG2120|consen 217 LEGLRLDDPIV--NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK----------------VT 278 (419)
T ss_pred ccccccCcHHH--HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh----------------hh
Confidence 99999987443 345788899999999854 666666778999999999999998754322 12
Q ss_pred hHhhhhcccccEEeccCccc---CCCcchhhcCCCCCcEEEccCC-cCccCchhhhhcCCCcCEEEccCCcccccCchh-
Q 044176 269 LVLKRIITIFTTIDLSSNQF---QGEIPQVLGDFKSLIVLNLSHN-GLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ- 343 (362)
Q Consensus 269 ~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~- 343 (362)
..+....++++.|+++++.- ...+..-...+++|..|+|+.| .+++.....|.+++.|++|.++.|+. ++|+.
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~ 356 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETL 356 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHe
Confidence 23334467899999999742 2123333467899999999987 46666677899999999999999874 45665
Q ss_pred --hhhhHhhhccCCCc
Q 044176 344 --FVDAEICSSFARPD 357 (362)
Q Consensus 344 --~~~l~~L~~l~~~~ 357 (362)
+.+.|.|.+|++..
T Consensus 357 ~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFG 372 (419)
T ss_pred eeeccCcceEEEEecc
Confidence 44556677775543
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=6.2e-09 Score=85.87 Aligned_cols=200 Identities=19% Similarity=0.243 Sum_probs=123.6
Q ss_pred CCCCcEEEcCCCccccccc-----CCcCCCcEEEccCCcCCC---CCCCCCCCccEEEccCccccc-CCcccccCCCCCC
Q 044176 18 WKSLTYLDISNNFLTQIEQ-----HPWKNITVLNLQNNTIQG---TILVPPPSTRAFLFSNNKLFG-QIPPSIYSLSSLE 88 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~-----~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 88 (362)
++.++.+|+.+|.|.++.. +.+|.|+.|+++.|++.. ..+....+|+++.+.+..+.- .....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4667777777777777765 567777777777777653 223446677777777665541 2223455677777
Q ss_pred EEEcccCcccc--cCCCCcccccccccEEEcccccccC-cchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCcEE
Q 044176 89 YISLSHNNLSG--TIPPCLGNFSTQLTILHLNNNYLQG-RIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLEVV 164 (362)
Q Consensus 89 ~L~L~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L 164 (362)
+|.++.|.+.. .-........+.++++...+|.... .--..+....|++..+.+..|++.+.. .+.+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 77777773331 1112222233456666665554320 001122334478888888888776432 3456677888889
Q ss_pred EccCCCCCCCc-chhccCCCCCCeEEccCCcCCCcc----ccccccccCCcccEEecc
Q 044176 165 NVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYGPL----CEVNIMLPFEALRIIDLS 217 (362)
Q Consensus 165 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~ 217 (362)
+++.+.+.++. .+++.+++.|+.|.+.++++.+.. ....-++++++++.|+=+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 99999885542 356788999999999999876532 223345677888887633
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.3e-08 Score=92.77 Aligned_cols=102 Identities=29% Similarity=0.340 Sum_probs=80.1
Q ss_pred CCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176 18 WKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH 94 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 94 (362)
+++++.+++.+|.|+.+.. ..+++|+.|++++|.|+... ...++.|+.|++++|.+... ..+..++.|+.+++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSY 171 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhcccCCc
Confidence 4889999999999998887 57899999999999988754 44477799999999998754 4566688999999999
Q ss_pred CcccccCCCC-cccccccccEEEccccccc
Q 044176 95 NNLSGTIPPC-LGNFSTQLTILHLNNNYLQ 123 (362)
Q Consensus 95 ~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~ 123 (362)
|++. .+... ...+ ..++.+++.+|.+.
T Consensus 172 n~i~-~ie~~~~~~~-~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 172 NRIV-DIENDELSEL-ISLEELDLGGNSIR 199 (414)
T ss_pred chhh-hhhhhhhhhc-cchHHHhccCCchh
Confidence 9988 44442 2344 57888888888765
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=2e-08 Score=91.61 Aligned_cols=192 Identities=24% Similarity=0.273 Sum_probs=137.0
Q ss_pred CCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCCC--CCCCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176 18 WKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTIL--VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS 93 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 93 (362)
+..++.+.+..+.|+.+.. ..+++|+.+++.+|.|..... ..+++|++|++++|.|... ..+..+..|+.|+++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 4778888899998888333 678999999999999987655 5599999999999999865 456778889999999
Q ss_pred cCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173 (362)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (362)
+|.+. .+.. +..+ ..|+.+++++|++....+.. ...+..++.+++.+|.+.. ...+..+..+..+++..|.+..
T Consensus 149 ~N~i~-~~~~-~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 149 GNLIS-DISG-LESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cCcch-hccC-Cccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence 99997 4443 3334 68999999999987433311 2344789999999998863 2344445555555777776643
Q ss_pred CcchhccCCC--CCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 174 TFPSWLGSLP--GLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 174 ~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
..+ +.... .|+.+++++|++.... ..+..+..+..+++..+.+.
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~~~~---~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRISRSP---EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccC--cccchhHHHHHHhcccCcccccc---ccccccccccccchhhcccc
Confidence 321 22223 3788888888776422 22355677788888877765
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=6e-08 Score=79.18 Aligned_cols=44 Identities=34% Similarity=0.493 Sum_probs=26.4
Q ss_pred cccCCCCCCEEEcccCcccccCCCCccccc---ccccEEEccccccc
Q 044176 80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFS---TQLTILHLNNNYLQ 123 (362)
Q Consensus 80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~~ 123 (362)
++.+|++|+..+||+|.+....|+.+..+. ..|.+|.+++|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 455677777777777777655554433321 45666666666553
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=1.7e-07 Score=76.56 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=42.7
Q ss_pred CCccEEeccCCcccCCCchhh----hcCCCCcEEEccCCCCCCCcchhcc-------------CCCCCCeEEccCCcCCC
Q 044176 135 CDLRSLGLNSNKLRGSFPRYL----ADCTGLEVVNVGNNMIGDTFPSWLG-------------SLPGLKILVLRSNRFYG 197 (362)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~~~L~~L~l~~n~~~~ 197 (362)
|.|++.++++|.+....|+.+ .+-+.|++|.+++|.+..+...-++ .-|.|+.+....|++..
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 566666666666654444332 3445666666666655322111111 23556666666665543
Q ss_pred cccccc--ccccCCcccEEeccCCccc
Q 044176 198 PLCEVN--IMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 198 ~~~~~~--~~~~~~~L~~L~l~~n~~~ 222 (362)
...... .+..-..|+++.+..|.|.
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 221111 1112235666666666655
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=9.1e-08 Score=88.26 Aligned_cols=126 Identities=21% Similarity=0.190 Sum_probs=87.6
Q ss_pred cccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh-ccCCCCCCeEE
Q 044176 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW-LGSLPGLKILV 189 (362)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 189 (362)
.|...+.++|++. .+...+. .++.++.|++++|+++.. ..+..+++|++||++.|.+.. +|.. ...+ +|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeee
Confidence 4566666666665 4444444 347888888888888743 377788888888888888743 3332 2233 488888
Q ss_pred ccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCc
Q 044176 190 LRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG 246 (362)
Q Consensus 190 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~ 246 (362)
+.+|.++. ...+.++++|+.||+++|-+.+......+..+..|..|.+.++..
T Consensus 239 lrnN~l~t----L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTT----LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHh----hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88887764 223467888999999999887666555677777888888877754
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.3e-07 Score=78.27 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=36.0
Q ss_pred CcEEEcCCCccccccc-----CCcCCCcEEEccCCcCCCC-----CCCCCCCccEEEccCcccccCCcccccCCCCCCEE
Q 044176 21 LTYLDISNNFLTQIEQ-----HPWKNITVLNLQNNTIQGT-----ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYI 90 (362)
Q Consensus 21 L~~L~ls~~~i~~~~~-----~~~~~L~~L~l~~n~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 90 (362)
+..+.+.++.|-.... ..+..++.+|+.+|.|.+. ....+|.|++|+++.|++...+-..-....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3344444444444333 2345566666666666531 12335555555555555543221111234455555
Q ss_pred EcccCcc
Q 044176 91 SLSHNNL 97 (362)
Q Consensus 91 ~L~~~~~ 97 (362)
.|.|+.+
T Consensus 127 VLNgT~L 133 (418)
T KOG2982|consen 127 VLNGTGL 133 (418)
T ss_pred EEcCCCC
Confidence 5555544
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1.2e-07 Score=69.39 Aligned_cols=83 Identities=29% Similarity=0.299 Sum_probs=65.6
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 354 (362)
...|+..++++|.+.+..+..-..++.++.+++++|+|. .+|..+..+++|+.|+++.|.+. ..|+.+..+.++-+|
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L- 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML- 128 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh-
Confidence 345788999999998665555557778999999999999 68888999999999999999998 677777665555555
Q ss_pred CCccccCC
Q 044176 355 RPDLYTNA 362 (362)
Q Consensus 355 ~~~l~~n~ 362 (362)
+..+||
T Consensus 129 --ds~~na 134 (177)
T KOG4579|consen 129 --DSPENA 134 (177)
T ss_pred --cCCCCc
Confidence 555554
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.3e-06 Score=51.49 Aligned_cols=38 Identities=39% Similarity=0.594 Sum_probs=25.3
Q ss_pred CCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 300 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
++|++|++++|+|+ .+|..+.+|++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35777777777777 455567777777777777777773
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=6.1e-08 Score=83.69 Aligned_cols=277 Identities=16% Similarity=0.075 Sum_probs=148.3
Q ss_pred CCcEEEccCCcCCCCC-----CCCCCCccEEEccCccccc-CCcccc-cCCCCCCEEEcccC-cccccCCCCcccccccc
Q 044176 41 NITVLNLQNNTIQGTI-----LVPPPSTRAFLFSNNKLFG-QIPPSI-YSLSSLEYISLSHN-NLSGTIPPCLGNFSTQL 112 (362)
Q Consensus 41 ~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~L~~~-~~~~~~~~~l~~~~~~L 112 (362)
.|+.|.+.++.-.+.. ...+|++++|.+.++...+ ..-..+ ..+++++++++..| .+++.....+....++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3555655555322211 1226667777666664221 110111 23667777777663 33322223344444677
Q ss_pred cEEEccccc-ccCcchhhhhcCCCCccEEeccCCcccCCCchhh----hcCCCCcEEEccCCC-CCCCcc-hhccCCCCC
Q 044176 113 TILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL----ADCTGLEVVNVGNNM-IGDTFP-SWLGSLPGL 185 (362)
Q Consensus 113 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~-~~~~~~-~~~~~~~~L 185 (362)
+++++++|. +++..-..+..+...++++...+|.-. ..+.+ +.+..+..+++..|. +++... ..-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 777777765 333223344444455666666655211 11122 223445555554442 333321 112345677
Q ss_pred CeEEccCCcCCCccccccccccCCcccEEeccCCcc-cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeee
Q 044176 186 KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF-TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTV 264 (362)
Q Consensus 186 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (362)
+.++.+++...+..+.+---.++++|+.+.+..+.- +..-...+-..+..|+.+++..+..........
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s---------- 366 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS---------- 366 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh----------
Confidence 777777764432222221224567888888877662 222223345566777777777665444332222
Q ss_pred cCcchHhhhhcccccEEeccCccc-CCCcc----hhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEccCCc
Q 044176 265 KGRDLVLKRIITIFTTIDLSSNQF-QGEIP----QVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDLSSNK 335 (362)
Q Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~----~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~ 335 (362)
+...++.|+++.+++|.. +++.. ..-..+..|..+.+.++... +...+.+..++.|+.+++-+++
T Consensus 367 ------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 367 ------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 222378899999998853 44422 22245677888999988654 5556667889999999988886
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=3e-07 Score=84.96 Aligned_cols=178 Identities=21% Similarity=0.182 Sum_probs=113.6
Q ss_pred chhhhcCCCCcEEEccCCCCCCCcchhccCC-CCCCeEEccCCcCC----------CccccccccccCCcccEEeccCCc
Q 044176 152 PRYLADCTGLEVVNVGNNMIGDTFPSWLGSL-PGLKILVLRSNRFY----------GPLCEVNIMLPFEALRIIDLSHNE 220 (362)
Q Consensus 152 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~----------~~~~~~~~~~~~~~L~~L~l~~n~ 220 (362)
|-.+..+..|++|.+.++.+.. . ..+..+ ..|++|-.. +..+ +..... -.+..|...++++|.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns---~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS---PVWNKLATASFSYNR 175 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc---hhhhhHhhhhcchhh
Confidence 5567788999999999998732 1 111111 122222111 1110 111111 234567788888888
Q ss_pred ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCC
Q 044176 221 FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300 (362)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 300 (362)
+. ..+. .+.-++.++.|++.++....+. ....+++|+.|||++|.+....--...+++
T Consensus 176 L~-~mD~-SLqll~ale~LnLshNk~~~v~--------------------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 176 LV-LMDE-SLQLLPALESLNLSHNKFTKVD--------------------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK 233 (1096)
T ss_pred HH-hHHH-HHHHHHHhhhhccchhhhhhhH--------------------HHHhcccccccccccchhccccccchhhhh
Confidence 76 3333 3666778888888877533332 122389999999999999844332344555
Q ss_pred CCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 301 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
|+.|.+.+|.++.. ..+.++++|+.||+++|-+.+.- .+..+..|.+|....|.||.
T Consensus 234 -L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hs--eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 -LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHS--ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcch--hhhHHHHHHHHHHHhhcCCc
Confidence 99999999999843 66899999999999999888532 34555666666666888874
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=5.5e-06 Score=64.95 Aligned_cols=82 Identities=28% Similarity=0.288 Sum_probs=34.2
Q ss_pred cccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCcEEEccCCCCCCCc---chhccCCCCCC
Q 044176 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLEVVNVGNNMIGDTF---PSWLGSLPGLK 186 (362)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~ 186 (362)
.|.+|.+.+|+|+ .+...+...+++|+.|.+.+|.+.... -..+..+++|+.|.+-+|.++..- ...+..+|+|+
T Consensus 65 rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~ 143 (233)
T KOG1644|consen 65 RLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR 143 (233)
T ss_pred ccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce
Confidence 4444444444444 222223333344444444444433110 112334455555555555443211 11244556666
Q ss_pred eEEccCC
Q 044176 187 ILVLRSN 193 (362)
Q Consensus 187 ~L~l~~n 193 (362)
.||++.-
T Consensus 144 ~LDF~kV 150 (233)
T KOG1644|consen 144 TLDFQKV 150 (233)
T ss_pred Eeehhhh
Confidence 6665543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2.7e-07 Score=67.54 Aligned_cols=83 Identities=31% Similarity=0.361 Sum_probs=40.0
Q ss_pred CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEE
Q 044176 85 SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV 164 (362)
Q Consensus 85 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 164 (362)
.+|...+|++|.+. .+|+.+....+.++++++.+|.+. .+|..++.+ +.|+.++++.|.+. ..|..+..+.++..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam-~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM-PALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhh-HHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 34444455555555 444444333334555555555554 445554443 55555555555554 344444445555555
Q ss_pred EccCCCC
Q 044176 165 NVGNNMI 171 (362)
Q Consensus 165 ~l~~~~~ 171 (362)
+..+|.+
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 5444444
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.05 E-value=9e-08 Score=82.70 Aligned_cols=282 Identities=17% Similarity=0.143 Sum_probs=147.6
Q ss_pred CCccEEEccCcccccC--CcccccCCCCCCEEEcccCcc-cccCCCCcccccccccEEEccccc-ccCcchhhhhcCCCC
Q 044176 61 PSTRAFLFSNNKLFGQ--IPPSIYSLSSLEYISLSHNNL-SGTIPPCLGNFSTQLTILHLNNNY-LQGRIPDAFANGSCD 136 (362)
Q Consensus 61 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~ 136 (362)
..|+.|.++++.=.+. .-..-.++++++.|.+.++.. ++....++.+..+++++|++..|. ++...-..+...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3456666666543221 112223566777776666642 222223344444567777776643 343333445555667
Q ss_pred ccEEeccCCc-ccCCCch-hhhcCCCCcEEEccCCCCCCC--cchhccCCCCCCeEEccCCcCCCccccccccccCCccc
Q 044176 137 LRSLGLNSNK-LRGSFPR-YLADCTGLEVVNVGNNMIGDT--FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALR 212 (362)
Q Consensus 137 L~~L~l~~~~-~~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 212 (362)
|++++++.|. +++...+ ...+...++.+...+|.-.+. +...-+.++.+..+++..|........+..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 7777777664 3332222 233445555555555532111 00111234445566665553322222222234566777
Q ss_pred EEeccCCcc-cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccC--
Q 044176 213 IIDLSHNEF-TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQ-- 289 (362)
Q Consensus 213 ~L~l~~n~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-- 289 (362)
.++.+.+.. ....-...-.++.+|+.+.+..+..+...++.. +...++.|+.+++.++...
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~----------------l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM----------------LGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh----------------hhcCChhhhhhcccccceehh
Confidence 887776543 222222334455666666666665443333222 2233788999999988653
Q ss_pred CCcchhhcCCCCCcEEEccCCcC-ccCc----hhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCcccc
Q 044176 290 GEIPQVLGDFKSLIVLNLSHNGL-TGSI----PVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYT 360 (362)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~n~i-~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~ 360 (362)
+.+.+.-.+++.|+.+.+++|.. ++.. ...-..+..|..+.+++++.+.. ..+..+...+.|...++++
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLEHLSICRNLERIELID 435 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHHHHHhhCcccceeeeec
Confidence 22333335789999999998864 3331 12235577899999999986532 2344454545544445543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.03 E-value=1.1e-05 Score=63.34 Aligned_cols=131 Identities=22% Similarity=0.226 Sum_probs=94.2
Q ss_pred CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEE
Q 044176 85 SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV 164 (362)
Q Consensus 85 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 164 (362)
..-+++++.+.++. .+ +.++....+...+|++.|.+. . ...+. .++.|.+|.+++|+|+...|..-..++.|..|
T Consensus 19 ~~e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~-~-l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 19 VRERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLR-K-LDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred cccccccccccccc-ch-hhccccccccceecccccchh-h-cccCC-CccccceEEecCCcceeeccchhhhccccceE
Confidence 34567788887775 22 234455467889999999875 2 22333 34899999999999996656555567889999
Q ss_pred EccCCCCCCCc-chhccCCCCCCeEEccCCcCCCccc-cccccccCCcccEEeccCCc
Q 044176 165 NVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYGPLC-EVNIMLPFEALRIIDLSHNE 220 (362)
Q Consensus 165 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~L~~L~l~~n~ 220 (362)
.+.+|.+.+.. .+-+..+|+|++|.+-+|+.+...- ....+..+|+|+.||+++-.
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99999874331 2336689999999999998876433 23356789999999987644
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=6.8e-06 Score=48.46 Aligned_cols=38 Identities=34% Similarity=0.564 Sum_probs=31.9
Q ss_pred ccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176 276 TIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 314 (362)
++|++|++++|+++ .++..++++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46899999999999 456668999999999999999984
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=3.9e-06 Score=80.35 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=89.1
Q ss_pred CCCCEEEcccCccc-ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcE
Q 044176 85 SSLEYISLSHNNLS-GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV 163 (362)
Q Consensus 85 ~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (362)
.+|++|+++|...- ..-|..++...|.|+.|.+++-.+...--..+...+|+|..|+++++.++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46777777765332 1233455555677777777775543221122333346777777777777633 56667777777
Q ss_pred EEccCCCCCC-CcchhccCCCCCCeEEccCCcCCCcc--cc--ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhh
Q 044176 164 VNVGNNMIGD-TFPSWLGSLPGLKILVLRSNRFYGPL--CE--VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN 238 (362)
Q Consensus 164 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~--~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 238 (362)
|.+.+-.+.. .....+-.+++|+.||++........ .. ...-..+|.|+.||++++.+....-+.....-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776655532 12223456777788887766544322 00 0112347888888888888876555555554555554
Q ss_pred cc
Q 044176 239 VD 240 (362)
Q Consensus 239 l~ 240 (362)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 44
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=0.0001 Score=65.49 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=67.3
Q ss_pred CCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCC-CCCccEEEccCc-ccccCCcccccCCCCCCEEEcccC
Q 044176 18 WKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVP-PPSTRAFLFSNN-KLFGQIPPSIYSLSSLEYISLSHN 95 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~ 95 (362)
+++++.|++++|.++.+| ..-.+|+.|.++++.--...+.. +++|+.|.+++| .+. .+| ..|+.|+++++
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~n 122 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLP------ESVRSLEIKGS 122 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-ccc------cccceEEeCCC
Confidence 466777777777777776 22235777777664322222222 456777777766 333 233 24556666554
Q ss_pred cccccCCCCcccccccccEEEccccccc--CcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCC
Q 044176 96 NLSGTIPPCLGNFSTQLTILHLNNNYLQ--GRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (362)
... . +..++++|+.|.+.+++.. ...|..+ -++|++|.+++|... ..|..+. .+|+.|+++.+
T Consensus 123 ~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 123 ATD-S----IKNVPNGLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCc-c----cccCcchHhheecccccccccccccccc---CCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 432 1 2233345666665432211 0112111 135777777776644 2333222 46666766554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=6e-06 Score=79.09 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=108.7
Q ss_pred ccccEEEcccccc-cCcchhhhhcCCCCccEEeccCCcccCC-CchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCe
Q 044176 110 TQLTILHLNNNYL-QGRIPDAFANGSCDLRSLGLNSNKLRGS-FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKI 187 (362)
Q Consensus 110 ~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 187 (362)
.+|++|++++... ...-|..+..++|+|+.|.+.+-.+... +.....++++|..||++++.+... ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5799999998653 3345667788889999999999776532 344566899999999999998654 56889999999
Q ss_pred EEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCc
Q 044176 188 LVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGR 267 (362)
Q Consensus 188 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (362)
|.+.+-.+.. ......+..+++|+.||+|........ .... +++.+.
T Consensus 200 L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~------qYlec~------------------------- 246 (699)
T KOG3665|consen 200 LSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDT-KIIE------QYLECG------------------------- 246 (699)
T ss_pred HhccCCCCCc-hhhHHHHhcccCCCeeeccccccccch-HHHH------HHHHhc-------------------------
Confidence 9988776654 223335577899999999987654222 1100 111111
Q ss_pred chHhhhhcccccEEeccCcccCCCcchh-hcCCCCCcEEEcc
Q 044176 268 DLVLKRIITIFTTIDLSSNQFQGEIPQV-LGDFKSLIVLNLS 308 (362)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~ 308 (362)
..+|.|+.||.++..+++..-+. +...++|+.+...
T Consensus 247 -----~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 247 -----MVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred -----ccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 11788999999988887654332 3344555555443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=0.00017 Score=64.13 Aligned_cols=75 Identities=12% Similarity=0.264 Sum_probs=42.8
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCC-cccCCCchhhhcCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSN-KLRGSFPRYLADCT 159 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~ 159 (362)
+..+.+++.|++++|.++ .+| .++++|+.|.+++|.-...+|..+. ++|++|.+++| .+. .+| .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------E 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------c
Confidence 334667777777777776 566 2334677777776543334554432 46777777776 333 233 2
Q ss_pred CCcEEEccCCC
Q 044176 160 GLEVVNVGNNM 170 (362)
Q Consensus 160 ~L~~L~l~~~~ 170 (362)
.|+.|++..+.
T Consensus 113 sLe~L~L~~n~ 123 (426)
T PRK15386 113 SVRSLEIKGSA 123 (426)
T ss_pred ccceEEeCCCC
Confidence 45556655443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=8.4e-05 Score=60.89 Aligned_cols=86 Identities=22% Similarity=0.223 Sum_probs=63.5
Q ss_pred cccccEEeccCc--ccCCCcchhhcCCCCCcEEEccCCcCcc-CchhhhhcCCCcCEEEccCCcccccC---chhhhhhH
Q 044176 275 ITIFTTIDLSSN--QFQGEIPQVLGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHGRI---PEQFVDAE 348 (362)
Q Consensus 275 ~~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~l~ 348 (362)
+++|+.|.+++| ++...++.....+++|+.+++++|+|.. .-...+..++.|..||+.+|..++.. ...|.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 678999999999 6665555555677999999999999873 11233566778889999999877521 12477788
Q ss_pred hhhccCCCcccc
Q 044176 349 ICSSFARPDLYT 360 (362)
Q Consensus 349 ~L~~l~~~~l~~ 360 (362)
+|++++.-+.-+
T Consensus 144 ~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 144 SLKYLDGCDVDG 155 (260)
T ss_pred hhccccccccCC
Confidence 999888776654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=0.00044 Score=51.88 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=21.2
Q ss_pred cCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccC
Q 044176 9 RISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQN 49 (362)
Q Consensus 9 ~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~ 49 (362)
.|+..+|..+.+|+.+.+.. .++.++.. .+++++.+.+..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 57788888878999998875 46666663 334566666654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.41 E-value=0.00057 Score=51.28 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=21.4
Q ss_pred CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176 57 LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118 (362)
Q Consensus 57 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~ 118 (362)
+..+++|+.+.+.. .+..+...+|.++.+|+.+.+.++ +. .++...+...+.++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 33344455555443 233333444555555555555443 33 3333333332345555553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00032 Score=57.59 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=61.3
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCC--cCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhc
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHN--GLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSS 352 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 352 (362)
...++.+++.+..++.. ..+..+++|+.|.++.| .+...++.....+|+|+++++++|++.. +..+..++.+.-
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 45677777777776522 23567789999999999 6666666667778999999999999984 555666666666
Q ss_pred cCCCccccC
Q 044176 353 FARPDLYTN 361 (362)
Q Consensus 353 l~~~~l~~n 361 (362)
|...+++++
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 666677654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=3.1e-05 Score=63.88 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=57.6
Q ss_pred CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCC-cccccCCCCCCEEEccc
Q 044176 18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQI-PPSIYSLSSLEYISLSH 94 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~ 94 (362)
+.++++|++.++.+.++.. ..++.|++|.|+=|.|+... +..+++|++|.|+.|.|...- -..+.++++|+.|.|..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 4678899999999998877 67888888888888877644 333777777777777665321 12355667777777766
Q ss_pred Ccccc
Q 044176 95 NNLSG 99 (362)
Q Consensus 95 ~~~~~ 99 (362)
|.-.+
T Consensus 98 NPCc~ 102 (388)
T KOG2123|consen 98 NPCCG 102 (388)
T ss_pred CCccc
Confidence 65543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.71 E-value=0.00045 Score=64.58 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=15.8
Q ss_pred ccccEEEccccc-ccCcchhhhhcCCCCccEEeccCCc
Q 044176 110 TQLTILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNK 146 (362)
Q Consensus 110 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 146 (362)
.+|+.++++++. +++..-..+...+++|++|.+.+|.
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 344455555444 3333333333333445555544443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.55 E-value=0.00062 Score=63.62 Aligned_cols=172 Identities=18% Similarity=0.098 Sum_probs=89.3
Q ss_pred cCCCcEEEccCC-cCCCCC----CCCCCCccEEEccCc-ccccCC----cccccCCCCCCEEEcccCc-ccccCCCCccc
Q 044176 39 WKNITVLNLQNN-TIQGTI----LVPPPSTRAFLFSNN-KLFGQI----PPSIYSLSSLEYISLSHNN-LSGTIPPCLGN 107 (362)
Q Consensus 39 ~~~L~~L~l~~n-~~~~~~----~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~L~~~~-~~~~~~~~l~~ 107 (362)
++.|+.+.+..+ .+.... ....+.|+.|+++++ ...... ......+++|+.|+++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666655544 222211 222677777777652 111111 1223446788888888887 55333333444
Q ss_pred ccccccEEEccccc-ccCcchhhhhcCCCCccEEeccCCcccCC--CchhhhcCCCCcEEEccCCCCCCCcchhccCCCC
Q 044176 108 FSTQLTILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNKLRGS--FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPG 184 (362)
Q Consensus 108 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (362)
..++|++|.+.+|. +++..-..+...++.|++|++++|..... ......++++++.+.+.... .++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence 33678888877776 55555555666667889999888764311 12223335555554433221 1333
Q ss_pred CCeEEccCCcCCC-ccccccccccCCcccEEeccCCc
Q 044176 185 LKILVLRSNRFYG-PLCEVNIMLPFEALRIIDLSHNE 220 (362)
Q Consensus 185 L~~L~l~~n~~~~-~~~~~~~~~~~~~L~~L~l~~n~ 220 (362)
++.+.+....... ..........+++++.+.+.++.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 4444443332211 01112223566777777777666
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00019 Score=59.43 Aligned_cols=100 Identities=23% Similarity=0.262 Sum_probs=56.6
Q ss_pred cccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc-chhccCCCCCCeEE
Q 044176 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILV 189 (362)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 189 (362)
+.+.|++.+|.+.+ ..+...|+.|+.|.++.|.|++. ..+..+++|+.|++..|.+.+.. ...+.++|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45566666666542 22233346677777777766532 34556667777777666664321 12355677777777
Q ss_pred ccCCcCCCcccc---ccccccCCcccEEe
Q 044176 190 LRSNRFYGPLCE---VNIMLPFEALRIID 215 (362)
Q Consensus 190 l~~n~~~~~~~~---~~~~~~~~~L~~L~ 215 (362)
|..|+..+.... ...+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777766543322 12344566666665
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.53 E-value=0.0013 Score=32.21 Aligned_cols=21 Identities=52% Similarity=0.748 Sum_probs=14.3
Q ss_pred CcCEEEccCCcccccCchhhhh
Q 044176 325 VLESLDLSSNKLHGRIPEQFVD 346 (362)
Q Consensus 325 ~L~~L~l~~n~~~~~~~~~~~~ 346 (362)
+|++||+++|+++ .+|+.|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56665554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.01 Score=28.91 Aligned_cols=18 Identities=50% Similarity=0.696 Sum_probs=13.6
Q ss_pred CCcEEEcCCCcccccccC
Q 044176 20 SLTYLDISNNFLTQIEQH 37 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~~ 37 (362)
+|+.|++++|+|+.+|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 477888888888877664
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0059 Score=48.37 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=51.4
Q ss_pred cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc-hhhh-hcCCCcCEEEccCCc-ccccCchhhhhhHhhhcc
Q 044176 277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI-PVSF-ANMIVLESLDLSSNK-LHGRIPEQFVDAEICSSF 353 (362)
Q Consensus 277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~l 353 (362)
.++.+|-+++.|..+.-+-+..++.++.|.+.+|.-.+.. .+.+ .-.++|+.|++++|. ||+..-..+..+++|+-|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3677777777776666666677777777777777543221 1112 134678888888774 776666666666666666
Q ss_pred CCCcc
Q 044176 354 ARPDL 358 (362)
Q Consensus 354 ~~~~l 358 (362)
.+.++
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 55444
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.95 E-value=0.018 Score=26.00 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=8.6
Q ss_pred CCCcEEEcCCCcccccc
Q 044176 19 KSLTYLDISNNFLTQIE 35 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~ 35 (362)
++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35677777777766543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.76 E-value=0.00079 Score=62.03 Aligned_cols=64 Identities=30% Similarity=0.335 Sum_probs=45.4
Q ss_pred ccEEeccCcccCCCc----chhhcCC-CCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCCcccccCc
Q 044176 278 FTTIDLSSNQFQGEI----PQVLGDF-KSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSNKLHGRIP 341 (362)
Q Consensus 278 L~~L~l~~n~~~~~~----~~~~~~~-~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~ 341 (362)
+..+++..|++.+.. ...+..+ ..++.++++.|.+++ .+++.+..++.++.+.++.|.+++...
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 556888888886542 3344455 677889999998874 344556777888999999988886433
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.75 E-value=0.00047 Score=63.45 Aligned_cols=62 Identities=26% Similarity=0.198 Sum_probs=43.5
Q ss_pred ccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccCc----hhhhhcCCCcCEEEccCCccc
Q 044176 276 TIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSI----PVSFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~~~ 337 (362)
+.++.+++..|.+++.. +..+..++.++++.+++|.+.+.. .+.......+.++.+.++...
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 331 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKG 331 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCcc
Confidence 56789999999997654 344566778999999999987532 233455566777777755443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.20 E-value=0.017 Score=28.78 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=9.5
Q ss_pred CCcCEEEccCCcccccCc
Q 044176 324 IVLESLDLSSNKLHGRIP 341 (362)
Q Consensus 324 ~~L~~L~l~~n~~~~~~~ 341 (362)
++|++|++++|++++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 556666666666665433
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.019 Score=45.57 Aligned_cols=37 Identities=24% Similarity=0.125 Sum_probs=21.9
Q ss_pred CCCCcEEEccCC-cCccCchhhhhcCCCcCEEEccCCc
Q 044176 299 FKSLIVLNLSHN-GLTGSIPVSFANMIVLESLDLSSNK 335 (362)
Q Consensus 299 ~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~ 335 (362)
.++|+.|+|++| +|++.....+..+++|+.|.+.+=+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 456666666665 3555555556666666666665543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.64 E-value=0.098 Score=26.54 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=10.4
Q ss_pred CCCCEEEcccCcccccCCCCc
Q 044176 85 SSLEYISLSHNNLSGTIPPCL 105 (362)
Q Consensus 85 ~~L~~L~L~~~~~~~~~~~~l 105 (362)
.+|++|+|++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.64 E-value=0.098 Score=26.54 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=10.4
Q ss_pred CCCCEEEcccCcccccCCCCc
Q 044176 85 SSLEYISLSHNNLSGTIPPCL 105 (362)
Q Consensus 85 ~~L~~L~L~~~~~~~~~~~~l 105 (362)
.+|++|+|++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 444443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.61 E-value=0.038 Score=27.50 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=8.1
Q ss_pred CCCcEEEccCCcCccCch
Q 044176 300 KSLIVLNLSHNGLTGSIP 317 (362)
Q Consensus 300 ~~L~~L~l~~n~i~~~~~ 317 (362)
++|++|+|++|+|++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 445555555555554333
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.84 E-value=0.15 Score=25.87 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=9.5
Q ss_pred CCcCEEEccCCcccc
Q 044176 324 IVLESLDLSSNKLHG 338 (362)
Q Consensus 324 ~~L~~L~l~~n~~~~ 338 (362)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.84 E-value=0.15 Score=25.87 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=9.5
Q ss_pred CCcCEEEccCCcccc
Q 044176 324 IVLESLDLSSNKLHG 338 (362)
Q Consensus 324 ~~L~~L~l~~n~~~~ 338 (362)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.90 E-value=1.2 Score=22.62 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=10.7
Q ss_pred CCCcEEEcCCCcccccc
Q 044176 19 KSLTYLDISNNFLTQIE 35 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~ 35 (362)
.+|+.|+++.|.|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 46666777776665543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.24 E-value=0.042 Score=44.74 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=41.0
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
..+.||++.|.+. ..-..|..+..+..|+++.|++. ..|....+. ..+++++...|+.. ..|..+... +.+++++
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k~-~~~k~~e 117 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQ-RETVNAASHKNNHS-QQPKSQKKE-PHPKKNE 117 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHH-HHHHHHHhhccchh-hCCcccccc-CCcchhh
Confidence 3344444444433 12233444555555666666655 555555554 45555555555544 455555443 5555555
Q ss_pred ccCCcc
Q 044176 142 LNSNKL 147 (362)
Q Consensus 142 l~~~~~ 147 (362)
..++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.84 E-value=0.94 Score=23.42 Aligned_cols=11 Identities=55% Similarity=0.606 Sum_probs=4.4
Q ss_pred CcEEEccCCcC
Q 044176 302 LIVLNLSHNGL 312 (362)
Q Consensus 302 L~~L~l~~n~i 312 (362)
|++|+|++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 33344444433
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.15 E-value=0.059 Score=43.92 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=61.9
Q ss_pred cccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhc
Q 044176 78 PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD 157 (362)
Q Consensus 78 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 157 (362)
...+......+.||++.|++- .+...+..+ +.+..++++.+.+. ..|..+.+. ..+..+....|... ..|..+..
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~-t~~~rl~~sknq~~-~~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSIL-TRLVRLDLSKNQIK-FLPKDAKQQ-RETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHH-HHHHHHhccHhhHh-hChhhHHHH-HHHHHHHhhccchh-hCCccccc
Confidence 345666778888888888776 455555554 56777888877776 567666554 45666666666655 56777778
Q ss_pred CCCCcEEEccCCCCC
Q 044176 158 CTGLEVVNVGNNMIG 172 (362)
Q Consensus 158 l~~L~~L~l~~~~~~ 172 (362)
.+.++.++..++.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 888888877777653
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.17 E-value=1.6 Score=22.14 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=13.3
Q ss_pred CCCcEEEcCCCccccccc
Q 044176 19 KSLTYLDISNNFLTQIEQ 36 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~ 36 (362)
++|+.|+.++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888777664
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.91 E-value=1.6 Score=40.49 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=51.6
Q ss_pred cCCCCcEEEcCCCccccccc-----CCcCCCcEEEccCC--cCCCCC-C--CCCCCccEEEccCcccccCCc---ccc--
Q 044176 17 RWKSLTYLDISNNFLTQIEQ-----HPWKNITVLNLQNN--TIQGTI-L--VPPPSTRAFLFSNNKLFGQIP---PSI-- 81 (362)
Q Consensus 17 ~~~~L~~L~ls~~~i~~~~~-----~~~~~L~~L~l~~n--~~~~~~-~--~~~~~L~~L~l~~~~~~~~~~---~~~-- 81 (362)
.++.+..+++++|++.++.. ...|+|..|+|++| .+.... . .+...|++|-+.+|.+..... ..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 46888899999998888776 46789999999999 333211 1 225678889999998764321 111
Q ss_pred --cCCCCCCEEE
Q 044176 82 --YSLSSLEYIS 91 (362)
Q Consensus 82 --~~l~~L~~L~ 91 (362)
.-+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 2467777776
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.01 E-value=2.8 Score=38.94 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=53.3
Q ss_pred cccccEEeccCcccCCC--cchhhcCCCCCcEEEccCCcCccCchhhhhcC--CCcCEEEccCCcccccCch---hhh--
Q 044176 275 ITIFTTIDLSSNQFQGE--IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANM--IVLESLDLSSNKLHGRIPE---QFV-- 345 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~---~~~-- 345 (362)
.+.+..++|++|++... +.+.-...|+|+.|+|++|...-....++.+. ..|++|.+.||++...... .+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 67788999999988643 22223467899999999993332222334333 4589999999987754221 122
Q ss_pred --hhHhhhccCCCccc
Q 044176 346 --DAEICSSFARPDLY 359 (362)
Q Consensus 346 --~l~~L~~l~~~~l~ 359 (362)
..|.|..|+-.++.
T Consensus 297 ~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 297 RELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHhcchheeecCcccC
Confidence 35566666655543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.57 E-value=23 Score=32.61 Aligned_cols=182 Identities=15% Similarity=0.020 Sum_probs=85.3
Q ss_pred CCCcEEEccCCcCCCCCCCCC-CCccEEEccCcccccCCcccccCC------CCCCEEEcccCcccccCCCCccccc--c
Q 044176 40 KNITVLNLQNNTIQGTILVPP-PSTRAFLFSNNKLFGQIPPSIYSL------SSLEYISLSHNNLSGTIPPCLGNFS--T 110 (362)
Q Consensus 40 ~~L~~L~l~~n~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l------~~L~~L~L~~~~~~~~~~~~l~~~~--~ 110 (362)
+.+++++++.|.+.+..+.++ ...--+.++.|..+.. .|..+ ..+.+++++.|...+.+|..+.... .
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lssk---fis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSK---FISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhh---HHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 467888888888776554441 1111256666655421 22222 3567888888877766665332221 2
Q ss_pred cccEEEcccccccC--cchhhhhcCCCCccEEeccCCcccC----CCc----hhhhcCCCCcEEEccCCCCCCCcc-hhc
Q 044176 111 QLTILHLNNNYLQG--RIPDAFANGSCDLRSLGLNSNKLRG----SFP----RYLADCTGLEVVNVGNNMIGDTFP-SWL 179 (362)
Q Consensus 111 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~----~~~----~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 179 (362)
-++.++.+...+.. .....++...+.+....++.|.... ..+ ..+..-.++ +|++..++.-..-+ ..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 35666666544321 1122222223456666666654321 111 123333455 67776665432211 111
Q ss_pred -cCC----CCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCc
Q 044176 180 -GSL----PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP 226 (362)
Q Consensus 180 -~~~----~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 226 (362)
+-. ..=-++++..|...+.....-.... ..++++....|...++..
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccc-eeeeEeeccccccccccc
Confidence 100 1112345555544321111101111 247778877777765544
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.26 E-value=5.2 Score=20.03 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.1
Q ss_pred CCCcCEEEccCCc-ccc
Q 044176 323 MIVLESLDLSSNK-LHG 338 (362)
Q Consensus 323 ~~~L~~L~l~~n~-~~~ 338 (362)
++.|++|++++|. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 5789999999985 664
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.11 E-value=24 Score=39.94 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=26.9
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNF 30 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~ 30 (362)
|++|+|+ .||...|..+++|+.|+|++|.
T Consensus 2 LSnN~Ls-tLp~g~F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 2 ISNNKIS-TIEEGICANLCNLSEIDLSGNP 30 (2740)
T ss_pred CCCCcCC-ccChHHhccCCCceEEEeeCCc
Confidence 7899999 9999999999999999999974
Done!