Query 044176
Match_columns 362
No_of_seqs 183 out of 2594
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 21:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-39 4.3E-44 317.7 26.0 353 1-361 276-714 (768)
2 3rgz_A Protein brassinosteroid 100.0 7E-39 2.4E-43 312.5 25.1 353 1-362 254-691 (768)
3 4eco_A Uncharacterized protein 100.0 2.4E-36 8.2E-41 288.4 20.9 344 3-362 192-598 (636)
4 3t6q_A CD180 antigen; protein- 100.0 1.4E-35 4.9E-40 282.6 25.4 352 1-361 40-486 (606)
5 3t6q_A CD180 antigen; protein- 100.0 4E-35 1.4E-39 279.5 28.2 292 62-362 255-558 (606)
6 3v47_A TOLL-like receptor 5B a 100.0 1.3E-35 4.6E-40 273.2 20.7 332 2-361 18-405 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1.2E-34 4.1E-39 268.3 25.3 310 2-338 19-334 (477)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-35 1.3E-39 279.8 20.5 353 1-361 39-555 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 6.3E-35 2.2E-39 283.8 22.4 343 3-362 434-838 (876)
10 4eco_A Uncharacterized protein 100.0 2.7E-35 9.1E-40 281.2 17.6 320 10-341 239-604 (636)
11 2z63_A TOLL-like receptor 4, v 100.0 1.1E-34 3.6E-39 274.7 21.0 353 1-362 35-529 (570)
12 1ziw_A TOLL-like receptor 3; i 100.0 3E-33 1E-37 270.1 28.2 355 1-361 32-490 (680)
13 3v47_A TOLL-like receptor 5B a 100.0 8.9E-34 3E-38 261.0 22.6 319 1-342 37-413 (455)
14 4ecn_A Leucine-rich repeat pro 100.0 5.8E-34 2E-38 277.0 21.1 350 1-362 330-817 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-33 5.8E-38 268.3 23.5 349 2-361 19-531 (606)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-33 4.9E-38 265.7 22.7 350 1-362 33-508 (549)
17 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-33 2.1E-37 267.8 27.4 346 1-362 229-620 (680)
18 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5.1E-37 243.9 27.6 301 17-362 42-344 (347)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-33 5.2E-38 263.8 22.1 326 1-361 28-478 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-33 9.5E-38 264.2 23.3 155 180-361 350-507 (562)
21 2id5_A Lingo-1, leucine rich r 100.0 7.3E-33 2.5E-37 256.4 22.0 316 21-362 13-331 (477)
22 2z63_A TOLL-like receptor 4, v 100.0 1.2E-32 4.2E-37 260.5 23.5 349 3-361 16-504 (570)
23 1o6v_A Internalin A; bacterial 100.0 1.4E-31 4.8E-36 246.8 27.9 322 2-353 54-380 (466)
24 4fmz_A Internalin; leucine ric 100.0 2.5E-31 8.6E-36 236.0 28.4 294 1-337 51-346 (347)
25 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-33 2.3E-37 259.4 18.8 326 1-362 7-455 (520)
26 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-32 1.7E-36 238.9 23.0 298 5-361 15-330 (332)
27 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-33 1.9E-37 273.5 18.3 243 3-248 57-376 (844)
28 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-32 3.8E-37 259.7 19.5 345 2-353 13-415 (549)
29 1xku_A Decorin; proteoglycan, 100.0 5.3E-31 1.8E-35 232.2 27.5 287 19-362 31-330 (330)
30 1ogq_A PGIP-2, polygalacturona 100.0 6.1E-32 2.1E-36 236.0 19.1 249 61-362 50-302 (313)
31 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-31 6.6E-36 255.4 24.1 354 1-362 59-578 (635)
32 3j0a_A TOLL-like receptor 5; m 100.0 7E-32 2.4E-36 265.7 20.8 311 2-338 12-376 (844)
33 3o6n_A APL1; leucine-rich repe 100.0 3.1E-31 1.1E-35 239.1 22.3 282 18-337 44-331 (390)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-31 8.4E-36 250.9 22.0 134 206-362 350-484 (562)
35 3o6n_A APL1; leucine-rich repe 100.0 9.3E-31 3.2E-35 236.0 23.3 284 38-362 43-329 (390)
36 1o6v_A Internalin A; bacterial 100.0 5.4E-30 1.9E-34 236.2 28.1 292 1-338 75-389 (466)
37 3oja_B Anopheles plasmodium-re 100.0 1.4E-30 4.7E-35 247.2 22.8 281 19-337 51-337 (597)
38 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-29 7.5E-34 230.7 27.7 297 1-338 49-353 (457)
39 3oja_B Anopheles plasmodium-re 100.0 9.3E-30 3.2E-34 241.5 23.7 283 38-361 49-334 (597)
40 4g8a_A TOLL-like receptor 4; l 100.0 9.9E-30 3.4E-34 243.5 24.0 347 4-362 41-553 (635)
41 1ogq_A PGIP-2, polygalacturona 100.0 8.9E-31 3E-35 228.7 13.9 249 40-338 50-306 (313)
42 1xku_A Decorin; proteoglycan, 100.0 3.3E-29 1.1E-33 220.7 22.9 269 39-361 30-303 (330)
43 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-29 2.2E-33 227.5 22.6 303 16-362 39-350 (457)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.5E-29 1.9E-33 219.4 19.2 253 40-347 33-287 (332)
45 1jl5_A Outer protein YOPM; leu 100.0 1.1E-27 3.7E-32 219.3 27.8 290 19-347 91-382 (454)
46 2z80_A TOLL-like receptor 2, v 100.0 2.3E-29 7.8E-34 223.8 14.2 279 18-341 30-318 (353)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-31 4.6E-36 246.9 -0.2 360 1-361 10-440 (461)
48 2z66_A Variable lymphocyte rec 100.0 3.3E-28 1.1E-32 212.0 16.8 277 22-346 10-296 (306)
49 3g06_A SSPH2 (leucine-rich rep 100.0 1.1E-26 3.8E-31 219.0 27.5 271 20-351 41-311 (622)
50 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-30 6.3E-35 239.3 1.6 331 16-347 53-450 (461)
51 2z80_A TOLL-like receptor 2, v 100.0 1E-27 3.5E-32 213.1 19.1 274 38-362 29-312 (353)
52 1jl5_A Outer protein YOPM; leu 100.0 9.9E-27 3.4E-31 212.9 25.6 306 1-347 98-421 (454)
53 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.6E-32 208.8 18.2 250 42-339 9-263 (306)
54 4fcg_A Uncharacterized protein 100.0 3.3E-27 1.1E-31 207.3 19.5 225 61-337 81-314 (328)
55 1ozn_A Reticulon 4 receptor; N 100.0 5.4E-27 1.9E-31 202.2 19.0 270 22-361 14-284 (285)
56 4fcg_A Uncharacterized protein 99.9 5E-27 1.7E-31 206.1 18.5 221 84-356 80-309 (328)
57 3zyi_A Leucine-rich repeat-con 99.9 1.6E-26 5.5E-31 212.2 22.5 248 42-338 56-304 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 2.4E-26 8.1E-31 210.3 21.5 246 43-337 46-292 (440)
59 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-25 9.9E-30 209.4 26.5 256 40-362 40-295 (622)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-26 5.7E-31 199.2 16.5 215 2-224 19-240 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 3.8E-26 1.3E-30 209.7 18.4 246 63-362 56-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 3.9E-26 1.3E-30 208.9 18.2 247 62-362 44-290 (440)
63 1wwl_A Monocyte differentiatio 99.9 2E-27 6.8E-32 207.5 5.1 249 39-338 42-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 9.6E-27 3.3E-31 203.6 8.9 254 42-355 12-269 (317)
65 1wwl_A Monocyte differentiatio 99.9 2.5E-27 8.4E-32 206.9 4.9 249 60-362 42-307 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 9.2E-27 3.1E-31 203.8 8.1 262 20-342 11-281 (317)
67 3oja_A Leucine-rich immune mol 99.9 5.1E-26 1.8E-30 210.1 11.8 232 62-353 35-267 (487)
68 3oja_A Leucine-rich immune mol 99.9 1.6E-24 5.6E-29 200.1 11.0 233 39-332 33-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 7.7E-23 2.6E-27 175.3 19.4 211 86-341 29-241 (276)
70 2o6q_A Variable lymphocyte rec 99.9 2.1E-22 7.1E-27 172.0 20.5 202 87-338 18-219 (270)
71 3goz_A Leucine-rich repeat-con 99.9 6.1E-24 2.1E-28 189.3 11.0 244 62-343 23-303 (362)
72 2o6q_A Variable lymphocyte rec 99.9 4E-22 1.4E-26 170.2 21.9 203 19-225 16-221 (270)
73 3ogk_B Coronatine-insensitive 99.9 2.4E-26 8.1E-31 218.4 -5.1 65 275-339 462-528 (592)
74 2z62_A TOLL-like receptor 4, v 99.9 1.3E-22 4.5E-27 173.9 17.7 223 23-314 11-238 (276)
75 3rfs_A Internalin B, repeat mo 99.9 5.6E-23 1.9E-27 175.7 14.7 199 18-228 40-241 (272)
76 3goz_A Leucine-rich repeat-con 99.9 1.2E-23 4.2E-28 187.3 10.3 257 66-362 3-295 (362)
77 3rfs_A Internalin B, repeat mo 99.9 3E-23 1E-27 177.4 11.8 195 20-221 20-217 (272)
78 2ca6_A RAN GTPase-activating p 99.9 9.5E-24 3.3E-28 189.8 8.5 240 61-341 32-320 (386)
79 1p9a_G Platelet glycoprotein I 99.9 6.8E-22 2.3E-26 170.3 19.1 203 81-337 6-208 (290)
80 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.8E-26 168.3 20.7 202 15-224 6-210 (290)
81 2ast_B S-phase kinase-associat 99.9 1.5E-23 5E-28 185.1 6.3 254 42-346 49-315 (336)
82 2ca6_A RAN GTPase-activating p 99.9 7.2E-24 2.5E-28 190.6 4.3 244 76-361 23-313 (386)
83 3ogk_B Coronatine-insensitive 99.9 4E-23 1.4E-27 196.2 7.8 329 16-362 161-524 (592)
84 2p1m_B Transport inhibitor res 99.9 2E-24 6.7E-29 205.3 -1.7 126 16-143 102-243 (594)
85 2ast_B S-phase kinase-associat 99.9 3E-22 1E-26 176.7 11.8 227 61-338 47-285 (336)
86 1h6u_A Internalin H; cell adhe 99.9 4.9E-21 1.7E-25 166.5 18.2 147 60-222 40-186 (308)
87 4glp_A Monocyte differentiatio 99.9 4.6E-22 1.6E-26 173.4 9.7 231 61-338 64-308 (310)
88 4glp_A Monocyte differentiatio 99.9 3.5E-22 1.2E-26 174.1 8.7 230 84-362 63-305 (310)
89 1h6u_A Internalin H; cell adhe 99.9 1.4E-20 4.8E-25 163.6 18.1 191 17-223 39-231 (308)
90 3m19_A Variable lymphocyte rec 99.9 2.4E-20 8.3E-25 157.4 18.7 180 19-223 14-193 (251)
91 3m19_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 153.9 20.0 178 62-247 15-192 (251)
92 2xwt_C Thyrotropin receptor; s 99.8 9.8E-21 3.4E-25 158.6 13.9 191 19-219 31-236 (239)
93 2xwt_C Thyrotropin receptor; s 99.8 4.5E-21 1.5E-25 160.7 10.5 179 111-338 32-219 (239)
94 2p1m_B Transport inhibitor res 99.8 3.4E-23 1.2E-27 196.8 -2.9 332 2-338 113-520 (594)
95 3cvr_A Invasion plasmid antige 99.8 5.4E-19 1.8E-23 164.8 17.3 134 62-222 60-193 (571)
96 4ay9_X Follicle-stimulating ho 99.8 6.7E-19 2.3E-23 155.9 17.2 195 22-222 12-215 (350)
97 4ay9_X Follicle-stimulating ho 99.8 3E-19 1E-23 158.2 14.4 243 43-335 12-257 (350)
98 2o6s_A Variable lymphocyte rec 99.8 7.2E-19 2.5E-23 144.0 13.7 175 22-228 10-184 (208)
99 3cvr_A Invasion plasmid antige 99.8 4.6E-18 1.6E-22 158.5 17.7 183 20-228 60-249 (571)
100 2o6s_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 139.8 14.6 162 2-200 15-182 (208)
101 1h6t_A Internalin B; cell adhe 99.8 8.1E-18 2.8E-22 144.9 16.5 128 81-222 42-169 (291)
102 1h6t_A Internalin B; cell adhe 99.8 1.1E-17 3.7E-22 144.1 16.8 182 25-222 30-213 (291)
103 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5.2E-23 163.4 12.3 188 20-223 22-211 (605)
104 2v9t_B SLIT homolog 2 protein 99.8 1.4E-17 4.7E-22 137.4 15.0 131 63-195 34-164 (220)
105 2xot_A Amphoterin-induced prot 99.8 7.1E-18 2.4E-22 149.9 13.0 172 22-196 21-202 (361)
106 2v9t_B SLIT homolog 2 protein 99.7 2.2E-17 7.4E-22 136.2 14.4 149 22-172 14-165 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 4.1E-17 1.4E-21 134.5 15.5 114 80-195 52-165 (220)
108 3e6j_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 133.9 16.4 134 61-197 40-173 (229)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 3.1E-17 1.1E-21 135.2 14.0 149 22-173 14-167 (220)
110 1m9s_A Internalin B; cell inva 99.7 3.6E-17 1.2E-21 154.1 16.0 128 81-222 39-166 (605)
111 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.6E-22 135.1 11.2 160 30-197 34-195 (197)
112 4ezg_A Putative uncharacterize 99.7 3.9E-17 1.3E-21 132.4 13.6 153 58-222 41-194 (197)
113 3e6j_A Variable lymphocyte rec 99.7 1E-16 3.6E-21 133.0 16.1 150 21-173 21-173 (229)
114 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.1E-22 139.8 11.2 124 84-222 18-141 (263)
115 2xot_A Amphoterin-induced prot 99.7 4.8E-17 1.6E-21 144.6 13.6 179 42-224 20-204 (361)
116 1xeu_A Internalin C; cellular 99.7 3E-17 1E-21 139.1 9.9 167 19-198 19-187 (263)
117 3sb4_A Hypothetical leucine ri 99.7 1.7E-17 6E-22 145.6 3.9 280 18-354 24-327 (329)
118 4b8c_D Glucose-repressible alc 99.6 5E-17 1.7E-21 156.8 4.8 163 19-202 173-335 (727)
119 1dce_A Protein (RAB geranylger 99.6 2.2E-18 7.4E-23 161.4 -5.3 208 82-353 346-565 (567)
120 3sb4_A Hypothetical leucine ri 99.6 5.6E-16 1.9E-20 135.9 10.3 216 18-240 48-327 (329)
121 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.7E-20 119.0 11.7 132 61-196 24-160 (168)
122 2ell_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 117.7 12.1 136 159-342 24-164 (168)
123 1dce_A Protein (RAB geranylger 99.6 6.6E-18 2.2E-22 158.2 -5.8 175 17-198 347-548 (567)
124 1w8a_A SLIT protein; signaling 99.6 9.6E-15 3.3E-19 117.6 12.8 126 22-149 11-140 (192)
125 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.9E-19 117.2 12.7 133 88-226 11-143 (192)
126 2je0_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 114.6 9.8 127 61-191 17-148 (149)
127 2je0_A Acidic leucine-rich nuc 99.6 8.5E-15 2.9E-19 112.9 10.8 77 277-353 65-145 (149)
128 4fdw_A Leucine rich hypothetic 99.6 5.9E-14 2E-18 125.8 17.2 268 14-337 108-383 (401)
129 4b8c_D Glucose-repressible alc 99.6 1.6E-15 5.4E-20 146.4 7.1 160 60-229 172-336 (727)
130 2wfh_A SLIT homolog 2 protein 99.6 5.4E-14 1.8E-18 113.2 13.3 62 135-196 78-139 (193)
131 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.6E-18 111.5 14.6 131 88-226 13-143 (193)
132 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 109.0 13.6 42 155-196 96-137 (177)
133 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 109.0 13.1 127 22-172 10-137 (177)
134 4fdw_A Leucine rich hypothetic 99.5 2.8E-13 9.6E-18 121.4 16.2 79 274-355 298-377 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.8E-18 109.2 9.3 126 18-171 18-152 (176)
136 4fs7_A Uncharacterized protein 99.5 5.5E-13 1.9E-17 119.8 14.1 309 6-353 59-393 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.6E-18 108.0 8.9 136 81-222 15-153 (176)
138 1ds9_A Outer arm dynein; leuci 99.4 3E-15 1E-19 121.3 -2.3 136 78-222 41-185 (198)
139 3un9_A NLR family member X1; l 99.4 8.3E-15 2.9E-19 130.1 -0.6 113 110-222 72-196 (372)
140 1ds9_A Outer arm dynein; leuci 99.4 6.5E-15 2.2E-19 119.3 -2.0 152 135-338 18-186 (198)
141 4fs7_A Uncharacterized protein 99.4 4.9E-12 1.7E-16 113.7 14.4 286 5-329 81-393 (394)
142 3un9_A NLR family member X1; l 99.4 9.1E-14 3.1E-18 123.4 1.4 139 84-222 71-224 (372)
143 3g39_A Variable lymphocyte rec 99.3 9E-12 3.1E-16 98.0 11.0 104 88-196 12-115 (170)
144 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 97.3 11.4 106 21-149 11-116 (170)
145 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 96.8 11.0 104 88-196 15-118 (174)
146 2r9u_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 95.8 11.0 85 62-148 34-118 (174)
147 4gt6_A Cell surface protein; l 99.3 2.7E-10 9.4E-15 102.2 17.5 312 6-355 51-385 (394)
148 4gt6_A Cell surface protein; l 99.1 4.8E-09 1.7E-13 94.1 19.3 294 31-355 51-364 (394)
149 2ra8_A Uncharacterized protein 99.0 1.2E-09 4E-14 96.2 9.2 156 135-335 172-341 (362)
150 2ra8_A Uncharacterized protein 99.0 1.5E-09 5E-14 95.6 9.0 171 135-344 139-327 (362)
151 2ifg_A High affinity nerve gro 99.0 2.2E-09 7.6E-14 94.5 9.6 103 64-172 11-116 (347)
152 4h09_A Hypothetical leucine ri 98.9 4.7E-08 1.6E-12 87.1 17.9 73 274-348 284-356 (379)
153 2ifg_A High affinity nerve gro 98.9 3.6E-09 1.2E-13 93.2 10.3 104 89-197 12-117 (347)
154 4h09_A Hypothetical leucine ri 98.9 9.1E-08 3.1E-12 85.2 18.2 81 275-357 262-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.8 2.6E-09 8.9E-14 85.0 4.0 65 275-339 92-166 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 1.8E-08 6.2E-13 80.1 3.7 88 275-362 64-162 (185)
157 3rw6_A Nuclear RNA export fact 98.5 2.6E-07 9.1E-12 77.2 7.1 84 273-358 167-261 (267)
158 3e4g_A ATP synthase subunit S, 98.4 5.5E-08 1.9E-12 75.5 1.4 81 277-357 62-148 (176)
159 3e4g_A ATP synthase subunit S, 98.2 9.2E-07 3.2E-11 68.6 3.0 34 160-193 115-149 (176)
160 3rw6_A Nuclear RNA export fact 98.0 5.9E-06 2E-10 69.0 5.4 80 82-165 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.7E-05 5.8E-10 62.7 4.3 63 276-338 98-171 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 6.2E-05 2.1E-09 59.5 3.6 61 275-335 69-137 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0019 6.7E-08 47.4 6.3 55 280-336 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0051 1.7E-07 45.1 6.7 33 65-97 35-67 (130)
165 2lz0_A Uncharacterized protein 76.0 2.9 0.0001 28.5 3.8 47 287-334 7-53 (100)
166 2lz0_A Uncharacterized protein 54.9 16 0.00055 24.8 4.1 41 151-192 12-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-39 Score=317.69 Aligned_cols=353 Identities=30% Similarity=0.409 Sum_probs=194.1
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC----CCCCCCccEEEccCccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI----LVPPPSTRAFLFSNNKL 73 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~~~~ 73 (362)
|++|+++|.+|..++..+++|+.|++++|.++...+ ..+++|+.|++++|.+.+.. +..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 355666666666665555666666666666554333 24455555555555544221 22344455555555544
Q ss_pred ccCCcccccCCC-C--------------------------CCEEEcccCcccccCCCCcccccccccEEEcccccccCcc
Q 044176 74 FGQIPPSIYSLS-S--------------------------LEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRI 126 (362)
Q Consensus 74 ~~~~~~~~~~l~-~--------------------------L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 126 (362)
.+.+|..+.+++ + |++|++++|.+++.+|..+..+ ++|++|++++|.+.+..
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcc
Confidence 444444443333 3 3333333333333333334333 34445555554444444
Q ss_pred hhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccc
Q 044176 127 PDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIML 206 (362)
Q Consensus 127 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 206 (362)
|..+... ++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+..+ .
T Consensus 435 p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~ 511 (768)
T 3rgz_A 435 PSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--G 511 (768)
T ss_dssp CGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--G
T ss_pred cHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--h
Confidence 4444433 445555555555544445555555555555555555544445555555555555555555554444332 4
Q ss_pred cCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcc-cccCCccc---------cc-------------------
Q 044176 207 PFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGL-YMQGEEDY---------YQ------------------- 257 (362)
Q Consensus 207 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~---------~~------------------- 257 (362)
.+++|++|++++|.+.+..|.. +..+++|+.+++.++... .++..... ..
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred cCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 4555555555555555444443 444555555555544322 00000000 00
Q ss_pred -------cc----------------eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176 258 -------DS----------------VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314 (362)
Q Consensus 258 -------~~----------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 314 (362)
.. ...............+++|+.||+++|++++.+|..++.+++|+.|+|++|++++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 00 0000000011112235778899999999988889889999999999999999998
Q ss_pred CchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176 315 SIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 315 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n 361 (362)
.+|..+..+++|+.||+++|++++.+|+.+..++.|++| ++++|
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L---~ls~N 714 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI---DLSNN 714 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE---ECCSS
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE---ECcCC
Confidence 899999999999999999999999999888887777776 66666
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-39 Score=312.47 Aligned_cols=353 Identities=26% Similarity=0.375 Sum_probs=258.1
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCcccc-ccc---CCcCCCcEEEccCCcCCCCCC---CCCCCccEEEccCccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQ-IEQ---HPWKNITVLNLQNNTIQGTIL---VPPPSTRAFLFSNNKL 73 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-~~~---~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~~~~ 73 (362)
|++|+++|.+|.. .+++|+.|++++|.+++ ++. ..+++|+.|++++|.+.+..+ ..+++|++|++++|.+
T Consensus 254 Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 254 ISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp CCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 5789999888876 56999999999999984 444 235899999999999876544 4489999999999999
Q ss_pred ccCCccc-ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcC-CCCccEEeccCCcccCCC
Q 044176 74 FGQIPPS-IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG-SCDLRSLGLNSNKLRGSF 151 (362)
Q Consensus 74 ~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~ 151 (362)
.+.+|.. +.++++|++|++++|.+++.+|..+..+.++|++|++++|.+.+..|..+... +++|++|++++|.+++..
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 8777765 99999999999999999888898888773378888888887776566555431 256777777777776666
Q ss_pred chhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHh
Q 044176 152 PRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFV 231 (362)
Q Consensus 152 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 231 (362)
|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..|.. +.
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~ 487 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSG-LS 487 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GG
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHH-Hh
Confidence 6777777777777777777666666667777777777777776665444433 55666777777777666555554 55
Q ss_pred hhhhhhhccccCCCccc-ccCCccccccceeeee--cC---cchHhhhhcccccEEeccCcccCCCcchhh---------
Q 044176 232 SLETMKNVDEKGSDGLY-MQGEEDYYQDSVTVTV--KG---RDLVLKRIITIFTTIDLSSNQFQGEIPQVL--------- 296 (362)
Q Consensus 232 ~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--------- 296 (362)
.+++|+.+++.++.... .+...........+.. .. ..+.....+++|+.|++++|.+++.+|..+
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh
Confidence 66666666666665431 1111111111111111 11 112233447889999999998876655433
Q ss_pred -------------------------------------------------------------cCCCCCcEEEccCCcCccC
Q 044176 297 -------------------------------------------------------------GDFKSLIVLNLSHNGLTGS 315 (362)
Q Consensus 297 -------------------------------------------------------------~~~~~L~~L~l~~n~i~~~ 315 (362)
..+++|+.|++++|++++.
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc
Confidence 3357899999999999999
Q ss_pred chhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 316 IPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+|..+..+++|+.|++++|++++.+|+.|..++.|++| |+++|+
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L---dLs~N~ 691 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL---DLSSNK 691 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE---ECCSSC
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE---ECCCCc
Confidence 99999999999999999999999999999998888877 777774
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-36 Score=288.37 Aligned_cols=344 Identities=19% Similarity=0.239 Sum_probs=267.3
Q ss_pred CCcccccCCccccccCCCCcEEEcCCCcccc------------------ccc--C--CcCCCcEEEccCCcCCCCCCC--
Q 044176 3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQ------------------IEQ--H--PWKNITVLNLQNNTIQGTILV-- 58 (362)
Q Consensus 3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~------------------~~~--~--~~~~L~~L~l~~n~~~~~~~~-- 58 (362)
+|+++| +|.++.. +++|+.|++++|.++. +|. . .+++|++|++++|.+.+..+.
T Consensus 192 ~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 689997 9987665 4999999999999999 776 4 789999999999998876554
Q ss_pred -CCCCccEEEccCcc-ccc-CCcccccCC------CCCCEEEcccCcccccCCC--CcccccccccEEEcccccccCcch
Q 044176 59 -PPPSTRAFLFSNNK-LFG-QIPPSIYSL------SSLEYISLSHNNLSGTIPP--CLGNFSTQLTILHLNNNYLQGRIP 127 (362)
Q Consensus 59 -~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~ 127 (362)
.+++|++|++++|. +++ .+|..++++ ++|++|++++|+++ .+|. .+..+ ++|++|++++|.+.+.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh
Confidence 48999999999998 887 788888876 99999999999999 8998 88887 799999999999987888
Q ss_pred hhhhcCCCCccEEeccCCcccCCCchhhhcCCC-CcEEEccCCCCCCCcchhccCCC--CCCeEEccCCcCCCccccccc
Q 044176 128 DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG-LEVVNVGNNMIGDTFPSWLGSLP--GLKILVLRSNRFYGPLCEVNI 204 (362)
Q Consensus 128 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~ 204 (362)
.+... ++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+...+ +|++|++++|.+.+..+..+.
T Consensus 348 -~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 348 -AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp -CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred -hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 66554 89999999999999 78888999999 999999999997 6777776654 899999999999876655431
Q ss_pred -----cccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccc----------cccceeeeecCcc-
Q 044176 205 -----MLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY----------YQDSVTVTVKGRD- 268 (362)
Q Consensus 205 -----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~- 268 (362)
...+++|++|++++|.+. .+|...+..+++++.+++.++....++..... ....+.+......
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 115679999999999998 67777788899999999999876644432111 1111111111111
Q ss_pred --hHhh-hhcccccEEeccCcccCCCcchhhcCCCCCcEEEc------cCCcCccCchhhhhcCCCcCEEEccCCccccc
Q 044176 269 --LVLK-RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNL------SHNGLTGSIPVSFANMIVLESLDLSSNKLHGR 339 (362)
Q Consensus 269 --~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 339 (362)
.... ..+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|+++ .
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ 580 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-K 580 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-B
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-c
Confidence 1111 246778888888888875 6777777888888888 456666777788888888888888888884 5
Q ss_pred CchhhhhhHhhhccCCCccccCC
Q 044176 340 IPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 340 ~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+|..+. +.|+.| ++++|+
T Consensus 581 ip~~~~--~~L~~L---~Ls~N~ 598 (636)
T 4eco_A 581 VNEKIT--PNISVL---DIKDNP 598 (636)
T ss_dssp CCSCCC--TTCCEE---ECCSCT
T ss_pred cCHhHh--CcCCEE---ECcCCC
Confidence 666554 445554 666663
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-35 Score=282.60 Aligned_cols=352 Identities=20% Similarity=0.177 Sum_probs=226.9
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~ 74 (362)
|++|+++ .+++..+..+++|+.|++++|.++.+.+ ..+++|++|++++|.+.+. .+..+++|++|++++|.+.
T Consensus 40 Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 118 (606)
T 3t6q_A 40 FSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118 (606)
T ss_dssp CTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred ccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence 5788888 5666666667999999999998888866 4577889999999988754 3455888899999999888
Q ss_pred cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCcc--EEeccCCcccC---
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR--SLGLNSNKLRG--- 149 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~--- 149 (362)
...+..++++++|++|++++|.+++.....+..+ ++|++|++++|.+.+..|..+... ++|+ ++++++|.+++
T Consensus 119 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC-TTCCEEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCCCCEECT
T ss_pred cCCcchhccCCcccEEECCCCcccccCcccccCC-cccCEEEcccCcccccChhhhhhh-cccceeEEecCCCccCccCh
Confidence 7667778888899999999888874222333334 688888888888775445555443 5555 55555555443
Q ss_pred ------------------------------------------------------------------------CCchhhhc
Q 044176 150 ------------------------------------------------------------------------SFPRYLAD 157 (362)
Q Consensus 150 ------------------------------------------------------------------------~~~~~~~~ 157 (362)
..+..+..
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 276 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcc
Confidence 22333555
Q ss_pred CCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176 158 CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237 (362)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 237 (362)
+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+...+..+++++
T Consensus 277 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC--GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh--hhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 566666666666664 34555666666666666666665533322 255666667777666666555555566667777
Q ss_pred hccccCCCccccc---CCccccccceeeeecC-----cchHhhhhcccccEEeccCcccCCCcch-hhcCCCCCcEEEcc
Q 044176 238 NVDEKGSDGLYMQ---GEEDYYQDSVTVTVKG-----RDLVLKRIITIFTTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLS 308 (362)
Q Consensus 238 ~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~ 308 (362)
.+++.++...... ...........+.... ........+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 7776666543332 1111111111111111 1122233467788888888877655443 36777888888888
Q ss_pred CCcCccCchhhhhcCCCcCEEEccCCccccc---CchhhhhhHhhhccCCCccccC
Q 044176 309 HNGLTGSIPVSFANMIVLESLDLSSNKLHGR---IPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 309 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~l~~~~l~~n 361 (362)
+|.+.+..+..+..+++|++|++++|++++. .+..+..+++|++| ++++|
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L---~Ls~n 486 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL---VLSFC 486 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE---ECTTS
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE---ECCCC
Confidence 8888777777788888888888888887753 22456666666665 55554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-35 Score=279.52 Aligned_cols=292 Identities=18% Similarity=0.162 Sum_probs=221.0
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
+++.+++++|.+.+..+..|.++++|++|++++|.++ .+|..+..+ ++|++|++++|.+....|..+... ++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNF-PSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGC-TTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhhhhcc-CcCCEEE
Confidence 4666677777777666667888899999999999998 888888777 689999999998885556566654 8899999
Q ss_pred ccCCcccCCCc-hhhhcCCCCcEEEccCCCCCCCc--chhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccC
Q 044176 142 LNSNKLRGSFP-RYLADCTGLEVVNVGNNMIGDTF--PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSH 218 (362)
Q Consensus 142 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 218 (362)
+++|.+.+..+ ..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+.. +..+++|++|++++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAF 409 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT--TTTCTTCSEEECTT
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH--hcCCccCCeEECCC
Confidence 99988775444 45788888999998888886654 566788888888888888876644443 36778888888888
Q ss_pred CcccCCCchhHHhhhhhhhhccccCCCcccccC-CccccccceeeeecCcc--------hHhhhhcccccEEeccCcccC
Q 044176 219 NEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG-EEDYYQDSVTVTVKGRD--------LVLKRIITIFTTIDLSSNQFQ 289 (362)
Q Consensus 219 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~L~l~~n~~~ 289 (362)
|.+.+..+...+..+++++.+++.++....... ..........+...... ......+++|+.|++++|.++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 888766665557778888888887775533221 11112222222222211 122445789999999999999
Q ss_pred CCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 290 GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+..|..+..+++|+.|++++|++++..|..+..++.| +|++++|++++..|+.+..+++|+.+ ++++|+
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L---~l~~N~ 558 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI---NLRQNP 558 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE---ECTTCC
T ss_pred ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE---eCCCCC
Confidence 8888889999999999999999998889999999999 99999999998888888888777777 777774
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-35 Score=273.18 Aligned_cols=332 Identities=18% Similarity=0.218 Sum_probs=202.1
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCC----CCCCCCCCccEEEccCcccc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQG----TILVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~~~~~ 74 (362)
+++.++ .+|. . .++|+.|++++|.|+++.+ ..+++|++|++++|.+.+ ..+..+++|++|++++|.+.
T Consensus 18 ~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 18 INRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp CSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred CCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 345666 6666 2 2778888888888888755 467788888888887653 33555888888888888888
Q ss_pred cCCcccccCCCCCCEEEcccCcccccCCCC--cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCc
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPC--LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP 152 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 152 (362)
+..|..|.++++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..|..+...+++|++|++++|.+++..+
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 777888888888888888888887433332 5555 6888888888888766666644445788888888888876666
Q ss_pred hhhhcC--CCCcEEEccCCCCCCCcchh--------ccCCCCCCeEEccCCcCCCcccc---------------------
Q 044176 153 RYLADC--TGLEVVNVGNNMIGDTFPSW--------LGSLPGLKILVLRSNRFYGPLCE--------------------- 201 (362)
Q Consensus 153 ~~~~~l--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~n~~~~~~~~--------------------- 201 (362)
..+..+ ..++.+++++|.+.+..+.. +..+++|++|++++|.+.+..+.
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 666554 34444455444443322211 11233444444444443221110
Q ss_pred ----------------ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeec
Q 044176 202 ----------------VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK 265 (362)
Q Consensus 202 ----------------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (362)
...-...++|+.+++++|.+.+..+.. +..+++|+.+++.++.......
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~-------------- 316 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDD-------------- 316 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECT--------------
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccCh--------------
Confidence 000012246777777777776544443 5666777777776665332211
Q ss_pred CcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhh
Q 044176 266 GRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345 (362)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 345 (362)
.....+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|.
T Consensus 317 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 317 ----NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ----hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 0111245566666666666555555566666666666666666655556666666666666666666654444455
Q ss_pred hhHhhhccCCCccccC
Q 044176 346 DAEICSSFARPDLYTN 361 (362)
Q Consensus 346 ~l~~L~~l~~~~l~~n 361 (362)
.+++|++| ++++|
T Consensus 393 ~l~~L~~L---~l~~N 405 (455)
T 3v47_A 393 RLTSLQKI---WLHTN 405 (455)
T ss_dssp TCTTCCEE---ECCSS
T ss_pred cCCcccEE---EccCC
Confidence 55555554 44444
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=268.32 Aligned_cols=310 Identities=20% Similarity=0.181 Sum_probs=223.6
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCccccc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFG 75 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~ 75 (362)
++++++ .+|..+. ++++.|++++|+|+.+++ ..+++|+.|++++|.+.+. .+..+++|++|++++|.+..
T Consensus 19 ~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 19 HRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 345666 6777654 678888888888888765 3567888888888887754 34557888888888888886
Q ss_pred CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176 76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL 155 (362)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 155 (362)
..+..|.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+... ++|++|++++|.+++..+..+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHH
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHh
Confidence 666677888888888888888875455556555 688888888888875555565544 788888888888886666678
Q ss_pred hcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhh
Q 044176 156 ADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235 (362)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 235 (362)
..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+... ....+|+.|++++|.+. ..+...+..+++
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~ 249 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLAVRHLVY 249 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SCCHHHHTTCTT
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-ccCHHHhcCccc
Confidence 888888888888888876666677888888888888877665444332 23447888888888887 555555677777
Q ss_pred hhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC
Q 044176 236 MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS 315 (362)
Q Consensus 236 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 315 (362)
|+.+++.++....... .....+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 250 L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 250 LRFLNLSYNPISTIEG------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp CCEEECCSSCCCEECT------------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred cCeeECCCCcCCccCh------------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence 7777777665332221 1112256777777777777766677777777777788877777766
Q ss_pred chhhhhcCCCcCEEEccCCcccc
Q 044176 316 IPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
.+..|..+++|++|++++|++..
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSCEEC
T ss_pred CHhHcCCCcccCEEEccCCCccC
Confidence 66667777777788887777764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-35 Score=279.79 Aligned_cols=353 Identities=22% Similarity=0.216 Sum_probs=195.6
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~ 74 (362)
|++|+++ .+++..+..+++|+.|++++|.++.+++ ..+++|++|++++|.+.+.. +..+++|++|++++|.+.
T Consensus 39 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 39 LSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117 (606)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence 4667777 4555555566777777777777777755 35567777777777776543 344777777777777777
Q ss_pred cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcC--------------------
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG-------------------- 133 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------- 133 (362)
...+..++++++|++|++++|.+++ .+|..+..+ ++|++|++++|.+.+..+..+...
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~ 196 (606)
T 3vq2_A 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196 (606)
T ss_dssp CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEE
T ss_pred cccccccCCCCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCccee
Confidence 6665667777777777777777763 356666666 577777777776653333222110
Q ss_pred ------CCCccEEeccCCcccC----------------------------------------------------------
Q 044176 134 ------SCDLRSLGLNSNKLRG---------------------------------------------------------- 149 (362)
Q Consensus 134 ------~~~L~~L~l~~~~~~~---------------------------------------------------------- 149 (362)
..+|++|++++|.+.+
T Consensus 197 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276 (606)
T ss_dssp CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG
T ss_pred CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccc
Confidence 0123333333332210
Q ss_pred ----------------------CCchhhhcCCCCcEEEccCCCCCCCcc--------------------hhccCCCCCCe
Q 044176 150 ----------------------SFPRYLADCTGLEVVNVGNNMIGDTFP--------------------SWLGSLPGLKI 187 (362)
Q Consensus 150 ----------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~ 187 (362)
.++ .+..+++|+.|++++|.+ +.+| ..+..+++|++
T Consensus 277 ~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 354 (606)
T 3vq2_A 277 DIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSY 354 (606)
T ss_dssp GGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred cccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCE
Confidence 000 111222333333333322 1111 01223344444
Q ss_pred EEccCCcCCCccccc-----------------------cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCC
Q 044176 188 LVLRSNRFYGPLCEV-----------------------NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGS 244 (362)
Q Consensus 188 L~l~~n~~~~~~~~~-----------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~ 244 (362)
|++++|.+.+..... ..+..+++|+.|++++|.+.+..+...+..+++|+.+++.++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 444444433221000 123455666666666666665544344566666777766666
Q ss_pred CcccccC-CccccccceeeeecCc------chHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCch
Q 044176 245 DGLYMQG-EEDYYQDSVTVTVKGR------DLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317 (362)
Q Consensus 245 ~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 317 (362)
....... ..........+..... .......+++|+.|++++|.+++..|..+..+++|++|++++|++++..|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 5433221 1111111111221111 11122346777778887777776667777777778888888887777667
Q ss_pred hhhhcCCCcCEEEccCCcccccCchhhhhhH-hhhccCCCccccC
Q 044176 318 VSFANMIVLESLDLSSNKLHGRIPEQFVDAE-ICSSFARPDLYTN 361 (362)
Q Consensus 318 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~l~~~~l~~n 361 (362)
..+..+++|++|++++|+++ .+|..+..++ +|+++ ++++|
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l---~l~~N 555 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF---NLTNN 555 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE---ECCSC
T ss_pred HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE---EccCC
Confidence 77777788888888888777 5666666664 35555 55555
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.3e-35 Score=283.76 Aligned_cols=343 Identities=17% Similarity=0.221 Sum_probs=261.6
Q ss_pred CCcccccCCccccccCCCCcEEEcCCCcccc------------------ccc--C--CcCCCcEEEccCCcCCCCCCC--
Q 044176 3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQ------------------IEQ--H--PWKNITVLNLQNNTIQGTILV-- 58 (362)
Q Consensus 3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~------------------~~~--~--~~~~L~~L~l~~n~~~~~~~~-- 58 (362)
+|+++| +|.++.. +++|+.|++++|.++. +|. . .+++|+.|++++|.+.+..+.
T Consensus 434 ~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 434 TNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred cCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence 588997 9987655 5999999999999998 666 3 689999999999998776554
Q ss_pred -CCCCccEEEccCcc-ccc-CCcccccCCC-------CCCEEEcccCcccccCCC--CcccccccccEEEcccccccCcc
Q 044176 59 -PPPSTRAFLFSNNK-LFG-QIPPSIYSLS-------SLEYISLSHNNLSGTIPP--CLGNFSTQLTILHLNNNYLQGRI 126 (362)
Q Consensus 59 -~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~ 126 (362)
.+++|++|++++|. +++ .+|..+++++ +|++|++++|.++ .+|. .+..+ ++|++|++++|.+. .+
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~l 588 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HL 588 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cc
Confidence 38999999999998 887 6787666655 9999999999999 8998 88887 79999999999998 78
Q ss_pred hhhhhcCCCCccEEeccCCcccCCCchhhhcCCC-CcEEEccCCCCCCCcchhccCCC--CCCeEEccCCcCCCcccccc
Q 044176 127 PDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG-LEVVNVGNNMIGDTFPSWLGSLP--GLKILVLRSNRFYGPLCEVN 203 (362)
Q Consensus 127 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~ 203 (362)
| .+.. +++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.+.+..+...
T Consensus 589 p-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 589 E-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp C-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred h-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 8 5554 489999999999999 78888999999 999999999996 6677776654 49999999999987554332
Q ss_pred ---ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccc----------cccceeeeecC---c
Q 044176 204 ---IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY----------YQDSVTVTVKG---R 267 (362)
Q Consensus 204 ---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~ 267 (362)
....+++|+.|++++|.+. .+|...+..+++|+.|++.++....++..... ....+.+.... .
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc
Confidence 1124558999999999998 77888788899999999998866544432111 01111111111 1
Q ss_pred chHhh-hhcccccEEeccCcccCCCcchhhcCCCCCcEEEccC------CcCccCchhhhhcCCCcCEEEccCCcccccC
Q 044176 268 DLVLK-RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSH------NGLTGSIPVSFANMIVLESLDLSSNKLHGRI 340 (362)
Q Consensus 268 ~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 340 (362)
...+. ..+++|+.|++++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|++++|++ +.+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence 11111 246778888888888875 566677788888888865 666677777888888888888888888 467
Q ss_pred chhhhhhHhhhccCCCccccCC
Q 044176 341 PEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 341 ~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
|..+. ++|+.| ++++|+
T Consensus 822 p~~l~--~~L~~L---dLs~N~ 838 (876)
T 4ecn_A 822 DEKLT--PQLYIL---DIADNP 838 (876)
T ss_dssp CSCCC--SSSCEE---ECCSCT
T ss_pred CHhhc--CCCCEE---ECCCCC
Confidence 76654 344444 666663
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-35 Score=281.16 Aligned_cols=320 Identities=17% Similarity=0.173 Sum_probs=187.3
Q ss_pred CCcccc-ccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCc-CCC-CCCCC---------CCCccEEEccCcccc
Q 044176 10 ISKSDS-QRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNT-IQG-TILVP---------PPSTRAFLFSNNKLF 74 (362)
Q Consensus 10 ~~~~~~-~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~-~~~-~~~~~---------~~~L~~L~l~~~~~~ 74 (362)
+|.++. ..+++|+.|++++|.+....+ ..+++|+.|++++|. +++ ..+.. +++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 666655 123777777777776554433 355667777777776 554 22221 266667777776666
Q ss_pred cCCcc--cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCC-ccEEeccCCcccCCC
Q 044176 75 GQIPP--SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSF 151 (362)
Q Consensus 75 ~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 151 (362)
.+|. .++++++|++|++++|.+++.+| .+..+ ++|++|++++|.+. .+|..+... ++ |++|++++|.++ .+
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE-IKLASLNLAYNQIT-EIPANFCGF-TEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE-EEESEEECCSSEEE-ECCTTSEEE-CTTCCEEECCSSCCS-SC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC-CCCCEEECCCCccc-cccHhhhhh-cccCcEEEccCCcCc-cc
Confidence 5555 66666667777776666665666 55554 46666666666665 555555543 45 666666666665 44
Q ss_pred chhhhcCC--CCcEEEccCCCCCCCcchhcc-------CCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 152 PRYLADCT--GLEVVNVGNNMIGDTFPSWLG-------SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 152 ~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
|..+.... +|+.|++++|.+.+..|..+. .+++|++|++++|.+.+..... +..+++|++|++++|.+.
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCS
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCC
Confidence 54444432 566666666665555554444 4455555555555555322211 133455555555555555
Q ss_pred CCCchhHHhhh-------hhhhhccccCCCcccccCCcc--ccccceeeeec--Cc--chHhhhhcccccEEec------
Q 044176 223 GFLPRWIFVSL-------ETMKNVDEKGSDGLYMQGEED--YYQDSVTVTVK--GR--DLVLKRIITIFTTIDL------ 283 (362)
Q Consensus 223 ~~~~~~~~~~~-------~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~--~~~~~~~~~~L~~L~l------ 283 (362)
.+|...+... ++|+.+++.++....++.... .+.....+... .. .+.....+++|+.|++
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCT
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccc
Confidence 3333322222 255555555554433222111 11111111111 11 1112234789999999
Q ss_pred cCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCc
Q 044176 284 SSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341 (362)
Q Consensus 284 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 341 (362)
++|++.+.+|..+..+++|++|++++|.+. .+|..+. ++|+.|++++|++....+
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 567788889999999999999999999995 6777765 899999999998875443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=274.68 Aligned_cols=353 Identities=21% Similarity=0.242 Sum_probs=212.9
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~ 74 (362)
|++|.++ .+++..|..+++|+.|++++|+++.+++ ..+++|++|++++|.+.+. .+..+++|++|++++|.+.
T Consensus 35 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 113 (570)
T 2z63_A 35 LSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (570)
T ss_dssp CCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc
Confidence 5677777 5566566666888888888888887765 3567788888888877643 3455777778888777777
Q ss_pred cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcC--------------------
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG-------------------- 133 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------- 133 (362)
...+..++++++|++|++++|.+++ .+|..+..+ ++|++|++++|.+....+..+...
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred cCCCccccccccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 6555567777777777777777763 356666666 577777777776653333322211
Q ss_pred --------------------------------------------------------------------------------
Q 044176 134 -------------------------------------------------------------------------------- 133 (362)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (362)
T Consensus 193 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 272 (570)
T 2z63_A 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272 (570)
T ss_dssp CTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred CHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh
Confidence
Q ss_pred --------CCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh-------------------ccCCCCCC
Q 044176 134 --------SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW-------------------LGSLPGLK 186 (362)
Q Consensus 134 --------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~L~ 186 (362)
+++|++|++++|.+. .+|..+..+ +|+.|++++|.+....... ...+++|+
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCC
Confidence 122333333333332 122222222 2333333333322110000 03456777
Q ss_pred eEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC--Cccccccceeeee
Q 044176 187 ILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG--EEDYYQDSVTVTV 264 (362)
Q Consensus 187 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~ 264 (362)
+|++++|.+.+.......+..+++|++|++++|.+.+..+ . +..+++++.+++.++....... ..........+..
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccc-c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 7777777665432111223556677777777776663332 2 5556666666666654332211 0111111111111
Q ss_pred cC-----cchHhhhhcccccEEeccCcccC-CCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 265 KG-----RDLVLKRIITIFTTIDLSSNQFQ-GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 265 ~~-----~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
.. ........+++|+.|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 11 11222334788999999999886 4577788888999999999999987778888889999999999999987
Q ss_pred cCchhhhhhHhhhccCCCccccCC
Q 044176 339 RIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 339 ~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
..|..|..+++|+.+ ++++|+
T Consensus 509 ~~~~~~~~l~~L~~L---~l~~N~ 529 (570)
T 2z63_A 509 VPDGIFDRLTSLQKI---WLHTNP 529 (570)
T ss_dssp CCTTTTTTCTTCCEE---ECCSSC
T ss_pred CCHHHhhcccCCcEE---EecCCc
Confidence 777778877777776 666653
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-33 Score=270.07 Aligned_cols=355 Identities=21% Similarity=0.232 Sum_probs=213.9
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~ 74 (362)
|++|.++ .++...+..+++|+.|++++|.++.+++ ..+++|+.|++++|.+.... +..+++|++|++++|.+.
T Consensus 32 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 32 LTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp CCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence 5677888 5666666667888888888888887766 35678888888888776543 445788888888888887
Q ss_pred cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhc-CCCCccEEeccCCcccCCCch
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN-GSCDLRSLGLNSNKLRGSFPR 153 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~ 153 (362)
+..+..|+++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+.. ..++|++|++++|.+++..+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred ccChhHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 7666778888888888888888875555555555 57777777777776444444321 124566666666655543332
Q ss_pred ---------------------------------------------------hhhcCC--CCcEEEccCCCCCCCcchhcc
Q 044176 154 ---------------------------------------------------YLADCT--GLEVVNVGNNMIGDTFPSWLG 180 (362)
Q Consensus 154 ---------------------------------------------------~~~~l~--~L~~L~l~~~~~~~~~~~~~~ 180 (362)
.+..++ +|+.|++++|.+.+..+..++
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence 233332 266666666666555555666
Q ss_pred CCCCCCeEEccCCcCCCcccccc-------------------------------ccccCCcccEEeccCCcccCCCchhH
Q 044176 181 SLPGLKILVLRSNRFYGPLCEVN-------------------------------IMLPFEALRIIDLSHNEFTGFLPRWI 229 (362)
Q Consensus 181 ~~~~L~~L~l~~n~~~~~~~~~~-------------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~ 229 (362)
.+++|++|++++|.+.+..+..+ .+..+++|++|++++|.+.+..+. .
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 348 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-M 348 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-T
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-H
Confidence 66777777777666554322211 233445555556655555533322 2
Q ss_pred HhhhhhhhhccccCCCc--ccccC--Ccccc-ccceee--e---ecCcchHhhhhcccccEEeccCcccCCCcc-hhhcC
Q 044176 230 FVSLETMKNVDEKGSDG--LYMQG--EEDYY-QDSVTV--T---VKGRDLVLKRIITIFTTIDLSSNQFQGEIP-QVLGD 298 (362)
Q Consensus 230 ~~~~~~l~~l~~~~~~~--~~~~~--~~~~~-~~~~~~--~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~ 298 (362)
+..+++++.+++.++.. ..... ..... .....+ . ...........+++|+.|++++|.+++.++ ..+.+
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 45556666666555431 01100 00000 000000 0 011111223345667777777777765443 45667
Q ss_pred CCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc--ccCchhhhhhHhhhccCCCccccC
Q 044176 299 FKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH--GRIPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 299 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~l~~~~l~~n 361 (362)
+++|++|++++|++.+..+..|..+++|++|++++|.++ +.+|..|..+++|++| ++++|
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L---~Ls~N 490 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL---DLSNN 490 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE---ECCSS
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE---ECCCC
Confidence 777777777777776666667777777777777777765 3566677777776666 55555
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.9e-34 Score=261.03 Aligned_cols=319 Identities=18% Similarity=0.215 Sum_probs=235.2
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccc-cccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKL 73 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~ 73 (362)
|++|.+++ +++..+..+++|+.|++++|.+. .+++ ..+++|++|++++|.+.+. .+..+++|++|++++|.+
T Consensus 37 Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 115 (455)
T 3v47_A 37 LSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115 (455)
T ss_dssp CCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC
Confidence 57889984 54555556699999999999886 4433 4678899999999988764 345588999999999998
Q ss_pred ccCCccc--ccCCCCCCEEEcccCcccccCCCC-cccccccccEEEcccccccCcchhhhhcC-CCCccEEeccCCcccC
Q 044176 74 FGQIPPS--IYSLSSLEYISLSHNNLSGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANG-SCDLRSLGLNSNKLRG 149 (362)
Q Consensus 74 ~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~ 149 (362)
.+..+.. |.++++|++|++++|.+++..|.. +..+ ++|++|++++|.+.+..+..+... ...++.+++++|.+.+
T Consensus 116 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred CccccCcccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence 8644444 888999999999999998555665 4455 789999999999886666555432 1345666666665553
Q ss_pred CCchh--------hhcCCCCcEEEccCCCCCCCcchhc-------------------------------------c--CC
Q 044176 150 SFPRY--------LADCTGLEVVNVGNNMIGDTFPSWL-------------------------------------G--SL 182 (362)
Q Consensus 150 ~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~-------------------------------------~--~~ 182 (362)
..+.. +..+++|+.|++++|.+.+..+..+ . ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 32221 1233455555555555543222211 1 23
Q ss_pred CCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceee
Q 044176 183 PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTV 262 (362)
Q Consensus 183 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 262 (362)
++|+++++++|.+.+..+..+ ..+++|++|++++|.+.+..+.. +..+++|+.+++.++......
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~------------ 339 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSID------------ 339 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEEC------------
T ss_pred cCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcC------------
Confidence 689999999998887555543 77889999999999998555544 678889999998887532211
Q ss_pred eecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCch
Q 044176 263 TVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342 (362)
Q Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 342 (362)
......+++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++...|.
T Consensus 340 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 340 ------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 12223378999999999999988888999999999999999999977777789999999999999999988773
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.8e-34 Score=277.01 Aligned_cols=350 Identities=15% Similarity=0.152 Sum_probs=258.9
Q ss_pred CCCCcccccCCccccccCCCCcEEEc-CCCccc-----------------------------------------------
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDI-SNNFLT----------------------------------------------- 32 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~l-s~~~i~----------------------------------------------- 32 (362)
|++|+++|.+|+++... ++|+.|++ ++|.+.
T Consensus 330 Ls~~~L~G~ip~~l~~L-~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 330 LAGFGAKGRVPDAIGQL-TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp CTTTCCEEEECGGGGGC-TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred CccCCCCCcCchHHhcc-ccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 67899999999887765 99999999 666432
Q ss_pred ------------------------------cccc--CCcCCCcEEEccCCcCCCC-----------------CCC-----
Q 044176 33 ------------------------------QIEQ--HPWKNITVLNLQNNTIQGT-----------------ILV----- 58 (362)
Q Consensus 33 ------------------------------~~~~--~~~~~L~~L~l~~n~~~~~-----------------~~~----- 58 (362)
.+|. ..+++|+.|++++|.+++. .+.
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 2333 3567899999999988871 222
Q ss_pred CCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc-ccc-cCCCCccccc------ccccEEEcccccccCcchh--
Q 044176 59 PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN-LSG-TIPPCLGNFS------TQLTILHLNNNYLQGRIPD-- 128 (362)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~-~~~~~l~~~~------~~L~~L~l~~~~~~~~~~~-- 128 (362)
.+++|++|++++|.+.+.+|..|+++++|++|++++|+ +++ .+|..++.+. ++|++|++++|.+. .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 57889999999999888899999999999999999998 876 6777666551 38999999999988 7887
Q ss_pred hhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCC-CCeEEccCCcCCCcccccccccc
Q 044176 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPG-LKILVLRSNRFYGPLCEVNIMLP 207 (362)
Q Consensus 129 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~ 207 (362)
.+... ++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.. .+.......
T Consensus 568 ~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~ 642 (876)
T 4ecn_A 568 SLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKS 642 (876)
T ss_dssp HHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTC
T ss_pred hhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cchhhhccc
Confidence 66654 89999999999988 667 8888999999999999986 67777888888 9999999998874 444443333
Q ss_pred CCcccEEeccCCcccCCCchhH--H--hhhhhhhhccccCCCcccccCCcc-ccccceeeee--cCcc---hHhhh----
Q 044176 208 FEALRIIDLSHNEFTGFLPRWI--F--VSLETMKNVDEKGSDGLYMQGEED-YYQDSVTVTV--KGRD---LVLKR---- 273 (362)
Q Consensus 208 ~~~L~~L~l~~n~~~~~~~~~~--~--~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~---~~~~~---- 273 (362)
.++|+.|++++|.+.+..|... . ....+|+.+++.++....++.... .......+.. .... .....
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence 4559999999999876554321 1 133478888888876654332110 1111111111 1111 11111
Q ss_pred ---hcccccEEeccCcccCCCcchhhc--CCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccC------CcccccCch
Q 044176 274 ---IITIFTTIDLSSNQFQGEIPQVLG--DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSS------NKLHGRIPE 342 (362)
Q Consensus 274 ---~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~ 342 (362)
.+++|+.|++++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 1338999999999988 6677776 88999999999999986 688888999999999976 778888888
Q ss_pred hhhhhHhhhccCCCccccCC
Q 044176 343 QFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 343 ~~~~l~~L~~l~~~~l~~n~ 362 (362)
.|..+++|+.| ++++|+
T Consensus 801 ~l~~L~~L~~L---~Ls~N~ 817 (876)
T 4ecn_A 801 GITTCPSLIQL---QIGSND 817 (876)
T ss_dssp TGGGCSSCCEE---ECCSSC
T ss_pred HHhcCCCCCEE---ECCCCC
Confidence 88888877777 666664
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-33 Score=268.31 Aligned_cols=349 Identities=16% Similarity=0.146 Sum_probs=228.9
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCccccc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFG 75 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~ 75 (362)
+++.++ .+|..+. ++++.|++++|.++++++ ..+++|++|++++|.+.+.. +..+++|++|++++|.+.+
T Consensus 19 ~~~~l~-~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 19 MDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp TTSCCS-SCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred cCCCcc-cCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 567788 8898765 789999999999999987 46789999999999988653 4568999999999999998
Q ss_pred CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccC-cchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176 76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG-RIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154 (362)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 154 (362)
..|..|+++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+ .+|..+... ++|++|++++|.+++..+..
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTT
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCC-CCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhh
Confidence 889999999999999999999984444667776 799999999999875 468888765 89999999999988655554
Q ss_pred hhcCCCC----cEEEccCCCCCCCcch-----------------------------------------------------
Q 044176 155 LADCTGL----EVVNVGNNMIGDTFPS----------------------------------------------------- 177 (362)
Q Consensus 155 ~~~l~~L----~~L~l~~~~~~~~~~~----------------------------------------------------- 177 (362)
++.+.+| ..+++++|.+.+..+.
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 4433322 2344443333211111
Q ss_pred -------------------------------------------------hccCCCCCCeEEccCCcCCCcccc-------
Q 044176 178 -------------------------------------------------WLGSLPGLKILVLRSNRFYGPLCE------- 201 (362)
Q Consensus 178 -------------------------------------------------~~~~~~~L~~L~l~~n~~~~~~~~------- 201 (362)
.+..+++|++|++++|.+.. .+.
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~-lp~~~l~~L~ 331 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDLPFLK 331 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS-CCCCCCSSCC
T ss_pred HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc-cccCCCCccc
Confidence 23334456666666665522 111
Q ss_pred -----------ccccccCCcccEEeccCCcccCCC--chhHHhhhhhhhhccccCCCcccccCCccccccceeeeecC--
Q 044176 202 -----------VNIMLPFEALRIIDLSHNEFTGFL--PRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKG-- 266 (362)
Q Consensus 202 -----------~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 266 (362)
...+..+++|++|++++|.+.+.. +. .+..+++++.+++..+.................+....
T Consensus 332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc
Confidence 112345677778888877776442 33 35667777777777765433322111111111111110
Q ss_pred ----------------------------cchHhhhhcccccEEeccCcccCC-CcchhhcCCCCCcEEEccCCcCccCch
Q 044176 267 ----------------------------RDLVLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLTGSIP 317 (362)
Q Consensus 267 ----------------------------~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~ 317 (362)
........+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..|
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 011112234556666666666654 245556666666666666666666666
Q ss_pred hhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176 318 VSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 318 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n 361 (362)
..+..+++|++|++++|++++..|..|..+++|+.| ++++|
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L---~l~~N 531 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL---DCSFN 531 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE---ECTTS
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE---ECCCC
Confidence 666667777777777777776666666666665555 55554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-33 Score=265.70 Aligned_cols=350 Identities=18% Similarity=0.182 Sum_probs=219.8
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~ 74 (362)
|++|+++ .+++..+..+++|+.|++++|+++.+++ ..+++|++|++++|.+.+.. +..+++|++|++++|.+.
T Consensus 33 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 33 LSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp CCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred CcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence 5677777 4444445556888888888888877765 35667788888888777544 345777777777777776
Q ss_pred cC-CcccccCCCCCCEEEcccCcccccCC-CCcccccccccEEEcccccccCcchhhhh---------------------
Q 044176 75 GQ-IPPSIYSLSSLEYISLSHNNLSGTIP-PCLGNFSTQLTILHLNNNYLQGRIPDAFA--------------------- 131 (362)
Q Consensus 75 ~~-~~~~~~~l~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~--------------------- 131 (362)
+. .|..++++++|++|++++|.+.+.++ ..+..+ ++|++|++++|.+.+..|..+.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 190 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH
T ss_pred ccchhhhhhccCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChhhhhccccCceEecccCcccccchh
Confidence 42 45567777777777777776332444 344444 5666676666666544443332
Q ss_pred --cCCCCccEEeccCCcccCCC--ch-----------------------------h------------------------
Q 044176 132 --NGSCDLRSLGLNSNKLRGSF--PR-----------------------------Y------------------------ 154 (362)
Q Consensus 132 --~~~~~L~~L~l~~~~~~~~~--~~-----------------------------~------------------------ 154 (362)
..+++|++|++++|.+++.. +. .
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~ 270 (549)
T 2z81_A 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270 (549)
T ss_dssp HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence 23456666666666655320 00 0
Q ss_pred -----------------------------------hhcCCCCcEEEccCCCCCCCcchhc-cCCCCCCeEEccCCcCCCc
Q 044176 155 -----------------------------------LADCTGLEVVNVGNNMIGDTFPSWL-GSLPGLKILVLRSNRFYGP 198 (362)
Q Consensus 155 -----------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~ 198 (362)
+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.
T Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~ 349 (549)
T 2z81_A 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349 (549)
T ss_dssp CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccc
Confidence 011234455555555543 233333 4688888999998888764
Q ss_pred ccc-ccccccCCcccEEeccCCcccCCCc-hhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcc--hHhhhh
Q 044176 199 LCE-VNIMLPFEALRIIDLSHNEFTGFLP-RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRD--LVLKRI 274 (362)
Q Consensus 199 ~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 274 (362)
.+. ...+..+++|++|++++|.+.+..+ ...+..+++|+.+++.++....++...........+...... ......
T Consensus 350 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~ 429 (549)
T 2z81_A 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429 (549)
T ss_dssp HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS
T ss_pred cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh
Confidence 332 1224667888889998888874322 134677888888888888655444322222222222222211 111112
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 354 (362)
+++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|+.|..+++|+.+
T Consensus 430 ~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L- 502 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI- 502 (549)
T ss_dssp CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE-
T ss_pred cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE-
Confidence 357888888888887542 46788999999999988 4555 4678899999999999998777778887777776
Q ss_pred CCccccCC
Q 044176 355 RPDLYTNA 362 (362)
Q Consensus 355 ~~~l~~n~ 362 (362)
++++|+
T Consensus 503 --~l~~N~ 508 (549)
T 2z81_A 503 --WLHTNP 508 (549)
T ss_dssp --ECCSSC
T ss_pred --EecCCC
Confidence 666663
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-33 Score=267.84 Aligned_cols=346 Identities=22% Similarity=0.227 Sum_probs=213.2
Q ss_pred CCCCcccccCCccccccCCC--CcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---C---------------
Q 044176 1 LSNNRIRGRISKSDSQRWKS--LTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---L--------------- 57 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~--L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~--------------- 57 (362)
|++|.+++..|.. +..++. |+.|++++|.++.+++ ..+++|+.|++++|.+.+.. +
T Consensus 229 L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 229 LSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp CTTSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred ccCCcccccChhH-hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 3456666433333 322233 6666666666666554 24556666666666554322 2
Q ss_pred ------------------CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc-cCCCCccc-c-cccccEEE
Q 044176 58 ------------------VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGN-F-STQLTILH 116 (362)
Q Consensus 58 ------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~-~-~~~L~~L~ 116 (362)
..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .++...+. . .++|+.|+
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~ 387 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence 224455555555555555444555555555555555554321 11111111 1 02466666
Q ss_pred cccccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcC
Q 044176 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195 (362)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 195 (362)
+++|++.+..|..+... ++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 388 L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp CTTSCCCEECTTTTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCCeEChhhhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 66666654445444433 667777777776654333 4666677777777777766555566666677777777777766
Q ss_pred CCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176 196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (362)
.........+..+++|+.|++++|.+.+ .+...+..+++|+.+++.++....+..... ..........+
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~~~~~~~~~~l 535 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHAN----------PGGPIYFLKGL 535 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTS----------TTSCCCTTTTC
T ss_pred cccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhc----------cCCcchhhcCC
Confidence 4322222234677888888888888874 343446777888888888776443321100 00000112347
Q ss_pred ccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhh-hhHhhhccC
Q 044176 276 TIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV-DAEICSSFA 354 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~l~ 354 (362)
++|+.|++++|+++...+..+.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+. .+++|+.+
T Consensus 536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l- 614 (680)
T 1ziw_A 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL- 614 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE-
T ss_pred CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE-
Confidence 8999999999999966666789999999999999999977677789999999999999999987777776 56666666
Q ss_pred CCccccCC
Q 044176 355 RPDLYTNA 362 (362)
Q Consensus 355 ~~~l~~n~ 362 (362)
++++|.
T Consensus 615 --~l~~N~ 620 (680)
T 1ziw_A 615 --DMRFNP 620 (680)
T ss_dssp --ECTTCC
T ss_pred --EccCCC
Confidence 666663
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=243.92 Aligned_cols=301 Identities=22% Similarity=0.288 Sum_probs=247.0
Q ss_pred cCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176 17 RWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH 94 (362)
Q Consensus 17 ~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 94 (362)
.+++|+.|+++++.++.++. ..+++|++|++++|.+.+.. +..+++|++|++++|.+... +.+.++++|++|++++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNE 119 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcC
Confidence 46999999999999999886 67899999999999988654 56699999999999999853 4689999999999999
Q ss_pred CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176 95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174 (362)
Q Consensus 95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (362)
|.++ .++. +..+ ++|++|++++|......+. +.. +++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 120 n~i~-~~~~-~~~l-~~L~~L~l~~n~~~~~~~~-~~~-l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 120 DNIS-DISP-LANL-TKMYSLNLGANHNLSDLSP-LSN-MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp SCCC-CCGG-GTTC-TTCCEEECTTCTTCCCCGG-GTT-CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred Cccc-Cchh-hccC-CceeEEECCCCCCcccccc-hhh-CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 9998 5554 5555 7999999999965534443 544 4899999999999885433 88999999999999998665
Q ss_pred cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcc
Q 044176 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254 (362)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 254 (362)
.+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++++.+++.++......
T Consensus 193 ~~--~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~---- 259 (347)
T 4fmz_A 193 SP--LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN---- 259 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG----
T ss_pred cc--ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh----
Confidence 43 7889999999999998876443 4778999999999999985444 678889999998887533221
Q ss_pred ccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCC
Q 044176 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSN 334 (362)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 334 (362)
....+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 260 ----------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 260 ----------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp ----------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred ----------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 122378999999999999864 45788999999999999999888899999999999999999
Q ss_pred cccccCchhhhhhHhhhccCCCccccCC
Q 044176 335 KLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 335 ~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
++++..| +..+++|+++ ++++|+
T Consensus 322 ~l~~~~~--~~~l~~L~~L---~l~~N~ 344 (347)
T 4fmz_A 322 HITDIRP--LASLSKMDSA---DFANQV 344 (347)
T ss_dssp SCCCCGG--GGGCTTCSEE---SSSCC-
T ss_pred ccccccC--hhhhhcccee---ehhhhc
Confidence 9997555 6667666666 777774
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=263.76 Aligned_cols=326 Identities=18% Similarity=0.214 Sum_probs=183.0
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCccccc-C
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG-Q 76 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~-~ 76 (362)
|++|+++ .+++..+..+++|+.|++++|+++++.+ ..+++|++|++++|.++......+++|++|++++|.+.+ .
T Consensus 28 Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 28 ISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp CCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCC
T ss_pred CCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCcccccc
Confidence 3455555 3444444444666666666666665543 345566666666666554333356666666666666654 2
Q ss_pred CcccccCCCCCCEEEcccCcccccCCCCcccccccc--cEEEcccccc--cCcchhhhhcC-------------------
Q 044176 77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQL--TILHLNNNYL--QGRIPDAFANG------------------- 133 (362)
Q Consensus 77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~~------------------- 133 (362)
+|..|+++++|++|++++|.+++ ..+..+ ++| ++|++++|.+ .+..|..+...
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l-~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEK---SSVLPI-AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCG---GGGGGG-TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred chhhhccCCcceEEEecCcccch---hhcccc-ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 45566666666666666666552 122222 334 5555555544 22222222210
Q ss_pred ---------------------------------------------------------------CCCccEEeccCCcccCC
Q 044176 134 ---------------------------------------------------------------SCDLRSLGLNSNKLRGS 150 (362)
Q Consensus 134 ---------------------------------------------------------------~~~L~~L~l~~~~~~~~ 150 (362)
.++|++|++++|.+++.
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 02455555555555544
Q ss_pred Cchhh-----hcCCCCcEEEccCCCC--------------------------CCCcchhccCCCCCCeEEccCCcCCCcc
Q 044176 151 FPRYL-----ADCTGLEVVNVGNNMI--------------------------GDTFPSWLGSLPGLKILVLRSNRFYGPL 199 (362)
Q Consensus 151 ~~~~~-----~~l~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 199 (362)
+|..+ ..++.|+.+++++|.+ .... ....+++|++|++++|.+.+..
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~ 340 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTV 340 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhh
Confidence 44444 3333333333333332 1110 0157788999999999888755
Q ss_pred ccccccccCCcccEEeccCCcccC--CCchhHHhhhhhhhhccccCCCccc-ccCCccccccceeeeecCcchHhhhhcc
Q 044176 200 CEVNIMLPFEALRIIDLSHNEFTG--FLPRWIFVSLETMKNVDEKGSDGLY-MQGEEDYYQDSVTVTVKGRDLVLKRIIT 276 (362)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (362)
+..+ ..+++|++|++++|.+.+ ..+ ..+..+++|+.+++.++.... ++.. ....++
T Consensus 341 ~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~------------------~~~~l~ 399 (520)
T 2z7x_B 341 FENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKG------------------DCSWTK 399 (520)
T ss_dssp TTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGC------------------SCCCCT
T ss_pred hhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCcccccc------------------hhccCc
Confidence 5443 778899999999998874 222 236778888888888876443 2210 011145
Q ss_pred cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchh-hhhhHhhhccCC
Q 044176 277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ-FVDAEICSSFAR 355 (362)
Q Consensus 277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~l~~ 355 (362)
+|+.|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++. +|.. |..+++|+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L-- 473 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKI-- 473 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE--
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEE--
Confidence 667777777766655544432 56777777777766 556655567777777777777763 4443 5555555555
Q ss_pred CccccC
Q 044176 356 PDLYTN 361 (362)
Q Consensus 356 ~~l~~n 361 (362)
++++|
T Consensus 474 -~l~~N 478 (520)
T 2z7x_B 474 -WLHTN 478 (520)
T ss_dssp -ECCSS
T ss_pred -ECcCC
Confidence 55554
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-33 Score=264.24 Aligned_cols=155 Identities=20% Similarity=0.268 Sum_probs=84.0
Q ss_pred cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCc-hhHHhhhhhhhhccccCCCccc-ccCCccccc
Q 044176 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP-RWIFVSLETMKNVDEKGSDGLY-MQGEEDYYQ 257 (362)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~ 257 (362)
..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+... ...+..+++++.+++.++.... +...
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----- 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG--CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR----- 422 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT--CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----
T ss_pred cCCCCceEEECCCCccccchhhh--hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----
Confidence 45667777777777776644433 2666777777777777764221 1225566777777777665332 1110
Q ss_pred cceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 337 (362)
....+++|+.|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 423 -------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 423 -------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp -------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred -------------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 011145566666666665544433322 45666666666665 34444445666666666666666
Q ss_pred ccCchh-hhhhHhhhccCCCccccC
Q 044176 338 GRIPEQ-FVDAEICSSFARPDLYTN 361 (362)
Q Consensus 338 ~~~~~~-~~~l~~L~~l~~~~l~~n 361 (362)
.+|.. |..+++|+.+ ++++|
T Consensus 487 -~l~~~~~~~l~~L~~L---~l~~N 507 (562)
T 3a79_B 487 -SVPDGVFDRLTSLQYI---WLHDN 507 (562)
T ss_dssp -CCCTTSTTTCTTCCCE---ECCSC
T ss_pred -CCCHHHHhcCCCCCEE---EecCC
Confidence 34433 4444444443 44444
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=256.37 Aligned_cols=316 Identities=17% Similarity=0.147 Sum_probs=266.5
Q ss_pred CcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 21 LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 21 L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
-+.+++++++++.+|....++++.|++++|.+.+. .+..+++|++|++++|.+.+..|.+|.++++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 46799999999999987778999999999999864 456699999999999999988899999999999999999999
Q ss_pred cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcch
Q 044176 98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS 177 (362)
Q Consensus 98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (362)
+ .+|...+...++|++|++++|.+....+..+... ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+.
T Consensus 93 ~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred C-ccCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 9 6776543333799999999999986666666654 8999999999999877788999999999999999999887777
Q ss_pred hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccc
Q 044176 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ 257 (362)
Q Consensus 178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 257 (362)
.+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|...+..+...+. ..+|+.+++.++....
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~--------- 238 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTA--------- 238 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTT--CSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCS---------
T ss_pred HhcccCCCcEEeCCCCcCcEeChh--hcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccc---------
Confidence 899999999999999998764443 3478899999999998877666655433 3478888887774322
Q ss_pred cceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 337 (362)
........+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 239 ---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 239 ---------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp ---------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ---------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 12223344789999999999999877888999999999999999999888999999999999999999999
Q ss_pred ccCchhhhhhHhhhccCCCccccCC
Q 044176 338 GRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 338 ~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+..+..|..+++|+.| ++++|.
T Consensus 310 ~~~~~~~~~l~~L~~L---~l~~N~ 331 (477)
T 2id5_A 310 TLEESVFHSVGNLETL---ILDSNP 331 (477)
T ss_dssp CCCGGGBSCGGGCCEE---ECCSSC
T ss_pred eeCHhHcCCCcccCEE---EccCCC
Confidence 7777778888888877 667763
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=260.50 Aligned_cols=349 Identities=19% Similarity=0.205 Sum_probs=247.9
Q ss_pred CCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccC
Q 044176 3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQ 76 (362)
Q Consensus 3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~ 76 (362)
+.+++ .+|..+. ++++.|++++|.++++++ ..+++|++|++++|.+.+.. +..+++|++|++++|.+...
T Consensus 16 ~~~l~-~ip~~l~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 16 ELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SSCCS-SCCSSSC---SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCcc-ccCCCcc---ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 44667 7887554 689999999999999876 46889999999999988643 55689999999999999988
Q ss_pred CcccccCCCCCCEEEcccCcccccCCC-CcccccccccEEEcccccccC-cchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176 77 IPPSIYSLSSLEYISLSHNNLSGTIPP-CLGNFSTQLTILHLNNNYLQG-RIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154 (362)
Q Consensus 77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 154 (362)
.+..|.++++|++|++++|.++ .++. .+..+ ++|++|++++|.+.. .+|..+... ++|++|++++|.+++..+..
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGG
T ss_pred CHhhhcCccccccccccccccc-cCCCcccccc-ccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHH
Confidence 8889999999999999999998 5554 56666 799999999999875 368888765 89999999999988666666
Q ss_pred hhcCCCC----cEEEccCCCCCCCcc------------------------------------------------------
Q 044176 155 LADCTGL----EVVNVGNNMIGDTFP------------------------------------------------------ 176 (362)
Q Consensus 155 ~~~l~~L----~~L~l~~~~~~~~~~------------------------------------------------------ 176 (362)
++.+++| +.+++++|.+.+..+
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 6666655 566666655432221
Q ss_pred ---------------------------hhccCCCCCCeEEccCCcCCCcccccc--------------------------
Q 044176 177 ---------------------------SWLGSLPGLKILVLRSNRFYGPLCEVN-------------------------- 203 (362)
Q Consensus 177 ---------------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~-------------------------- 203 (362)
..+..+++|++|++++|.+.+......
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~ 328 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCC
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccC
Confidence 122234455555555554432111000
Q ss_pred -------------ccccCCcccEEeccCCcccCCCc-hhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCc--
Q 044176 204 -------------IMLPFEALRIIDLSHNEFTGFLP-RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGR-- 267 (362)
Q Consensus 204 -------------~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 267 (362)
....+++|++|++++|.+.+... ...+..+++++.+++.++.................+.....
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred EEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcc
Confidence 00345566666666666653321 12355667777777777654433322111122222222111
Q ss_pred ----chHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEccCCcccccCch
Q 044176 268 ----DLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDLSSNKLHGRIPE 342 (362)
Q Consensus 268 ----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 342 (362)
.......+++|+.|++++|.+++..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|.
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence 1123345788999999999998888888889999999999999987 46788899999999999999999988888
Q ss_pred hhhhhHhhhccCCCccccC
Q 044176 343 QFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 343 ~~~~l~~L~~l~~~~l~~n 361 (362)
.|..+++|++| ++++|
T Consensus 489 ~~~~l~~L~~L---~l~~n 504 (570)
T 2z63_A 489 AFNSLSSLQVL---NMASN 504 (570)
T ss_dssp TTTTCTTCCEE---ECCSS
T ss_pred hhhcccCCCEE---eCCCC
Confidence 88888888877 55555
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-31 Score=246.81 Aligned_cols=322 Identities=22% Similarity=0.297 Sum_probs=176.9
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPP 79 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~ 79 (362)
+++.++ .+|. +..+++|+.|++++|.++++++ ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+. +
T Consensus 54 ~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~- 128 (466)
T 1o6v_A 54 DRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-D- 128 (466)
T ss_dssp CSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-G-
T ss_pred CCCCCc-cCcc--hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-h-
Confidence 455666 4553 3445778888888877777765 46677777777777776543 44477777777777777654 2
Q ss_pred cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC
Q 044176 80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT 159 (362)
Q Consensus 80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 159 (362)
.+.++++|++|++++|.+. .++ .+..+ ++|++|++++ .+.. .+. +.. +++|++|++++|.+.+. ..+..++
T Consensus 129 ~~~~l~~L~~L~l~~n~l~-~~~-~~~~l-~~L~~L~l~~-~~~~-~~~-~~~-l~~L~~L~l~~n~l~~~--~~l~~l~ 199 (466)
T 1o6v_A 129 PLKNLTNLNRLELSSNTIS-DIS-ALSGL-TSLQQLSFGN-QVTD-LKP-LAN-LTTLERLDISSNKVSDI--SVLAKLT 199 (466)
T ss_dssp GGTTCTTCSEEEEEEEEEC-CCG-GGTTC-TTCSEEEEEE-SCCC-CGG-GTT-CTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred HHcCCCCCCEEECCCCccC-CCh-hhccC-CcccEeecCC-cccC-chh-hcc-CCCCCEEECcCCcCCCC--hhhccCC
Confidence 2777777777777777776 333 23333 3444444432 2221 111 222 24555555555555422 2344555
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhc
Q 044176 160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239 (362)
Q Consensus 160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 239 (362)
+|+.|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.+
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L 270 (466)
T 1o6v_A 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTEL 270 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEE
T ss_pred CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEE
Confidence 55555555555544332 34455555555555544432 112344455555555555443322 3344444555
Q ss_pred cccCCCcccccCCccccccceeeeecC---cchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc
Q 044176 240 DEKGSDGLYMQGEEDYYQDSVTVTVKG---RDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 316 (362)
++.++........ ........+.... ........+++|+.|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 271 ~l~~n~l~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 271 KLGANQISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp ECCSSCCCCCGGG-TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred ECCCCccCccccc-cCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence 4444433222110 0000000000000 000113346778888888888776544 56778888888888877754
Q ss_pred hhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhcc
Q 044176 317 PVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF 353 (362)
Q Consensus 317 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l 353 (362)
..+..+++|++|++++|++++..| +..+++|+.|
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 467778888888888888876555 5666666655
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.5e-31 Score=236.00 Aligned_cols=294 Identities=21% Similarity=0.305 Sum_probs=240.6
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIP 78 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 78 (362)
+++|.++ .++. +..+++|+.|++++|.++++++ ..+++|++|++++|.+.+.. +..+++|++|++++|.+... +
T Consensus 51 l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~ 126 (347)
T 4fmz_A 51 VAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-S 126 (347)
T ss_dssp CCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-G
T ss_pred EeCCccc-cchh--hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-h
Confidence 4677787 5654 5557999999999999999886 67899999999999988643 55699999999999999854 3
Q ss_pred ccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcC
Q 044176 79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC 158 (362)
Q Consensus 79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 158 (362)
. +..+++|++|++++|... ..+..+..+ ++|++|++++|.+.. .+. +.. +++|++|++++|.+.+. +. +..+
T Consensus 127 ~-~~~l~~L~~L~l~~n~~~-~~~~~~~~l-~~L~~L~l~~~~~~~-~~~-~~~-l~~L~~L~l~~n~l~~~-~~-~~~l 198 (347)
T 4fmz_A 127 P-LANLTKMYSLNLGANHNL-SDLSPLSNM-TGLNYLTVTESKVKD-VTP-IAN-LTDLYSLSLNYNQIEDI-SP-LASL 198 (347)
T ss_dssp G-GTTCTTCCEEECTTCTTC-CCCGGGTTC-TTCCEEECCSSCCCC-CGG-GGG-CTTCSEEECTTSCCCCC-GG-GGGC
T ss_pred h-hccCCceeEEECCCCCCc-ccccchhhC-CCCcEEEecCCCcCC-chh-hcc-CCCCCEEEccCCccccc-cc-ccCC
Confidence 3 889999999999999666 334446666 799999999999874 333 444 48999999999999854 33 8899
Q ss_pred CCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhh
Q 044176 159 TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN 238 (362)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 238 (362)
++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++++.
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~ 269 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-N--AVKDLTKLKM 269 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCCE
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-h--hHhcCCCcCE
Confidence 999999999999976544 7889999999999999887444 47889999999999998853 2 3678889999
Q ss_pred ccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchh
Q 044176 239 VDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV 318 (362)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 318 (362)
+++.++...... ....+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus 270 L~l~~n~l~~~~--------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 270 LNVGSNQISDIS--------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp EECCSSCCCCCG--------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred EEccCCccCCCh--------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 998887533221 12337899999999999998888889999999999999999996655
Q ss_pred hhhcCCCcCEEEccCCccc
Q 044176 319 SFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 319 ~~~~~~~L~~L~l~~n~~~ 337 (362)
+..+++|++|++++|+++
T Consensus 329 -~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSCC---
T ss_pred -hhhhhccceeehhhhccc
Confidence 899999999999999986
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-33 Score=259.39 Aligned_cols=326 Identities=22% Similarity=0.214 Sum_probs=225.6
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~ 74 (362)
+++|+++ .+|..++ ++++.|++++|.++.+++ ..+++|++|++++|.+++. .+..+++|++|++++|.+.
T Consensus 7 ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 7 RSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred cCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 5789999 7998776 899999999999999876 5789999999999999865 4566999999999999998
Q ss_pred cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcCCCCc--cEEeccCCcc--cC
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL--RSLGLNSNKL--RG 149 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~ 149 (362)
. +|.. .+++|++|++++|.+++ .+|..+..+ ++|++|++++|.+.+ ..+.. +++| ++|++++|.+ .+
T Consensus 83 ~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~~~-l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 83 K-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---SSVLP-IAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp E-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---GGGGG-GTTSCEEEEEEEECTTTTSS
T ss_pred e-cCcc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---hhccc-cccceeeEEEeecccccccc
Confidence 4 5555 79999999999999985 467788887 799999999999874 23333 3677 9999999988 44
Q ss_pred CCchhhhcC--------------------------C--------------------------------------------
Q 044176 150 SFPRYLADC--------------------------T-------------------------------------------- 159 (362)
Q Consensus 150 ~~~~~~~~l--------------------------~-------------------------------------------- 159 (362)
..|..+..+ +
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 444444332 2
Q ss_pred -------------CCcEEEccCCCCCCCcchhc-----cCCCCCCeEEccCCcCCCccccc-------------------
Q 044176 160 -------------GLEVVNVGNNMIGDTFPSWL-----GSLPGLKILVLRSNRFYGPLCEV------------------- 202 (362)
Q Consensus 160 -------------~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~------------------- 202 (362)
+|+.|++++|.+.+..|..+ +.+++|+.+++++|.+ ..+...
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCc
Confidence 34444444444433344433 3344433344333333 100000
Q ss_pred ----cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176 203 ----NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF 278 (362)
Q Consensus 203 ----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 278 (362)
.....+++|++|++++|.+.+..+.. +..+++++.+++.++....+.. .......+++|
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~----------------~~~~~~~l~~L 376 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSK----------------IAEMTTQMKSL 376 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH----------------HHHHHTTCTTC
T ss_pred cccccchhhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCcccc----------------chHHHhhCCCC
Confidence 00134455566666666555434433 3455555555555543221110 01223447899
Q ss_pred cEEeccCcccCCCcch-hhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCc
Q 044176 279 TTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPD 357 (362)
Q Consensus 279 ~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~ 357 (362)
+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++| +
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L---~ 450 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL---N 450 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE---E
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE---E
Confidence 9999999999874554 478889999999999999876666554 79999999999999 788877788777777 6
Q ss_pred cccCC
Q 044176 358 LYTNA 362 (362)
Q Consensus 358 l~~n~ 362 (362)
+++|+
T Consensus 451 L~~N~ 455 (520)
T 2z7x_B 451 VASNQ 455 (520)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 66663
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.1e-32 Score=238.88 Aligned_cols=298 Identities=20% Similarity=0.253 Sum_probs=225.6
Q ss_pred cccccCCccccccCC-----CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccC
Q 044176 5 RIRGRISKSDSQRWK-----SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQ 76 (362)
Q Consensus 5 ~~~~~~~~~~~~~~~-----~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~ 76 (362)
.++ .+|..+...+| +++.++++++.++.+|....++++.|++++|.+.+. .+..+++|++|++++|.+.+.
T Consensus 15 ~l~-~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 15 DLD-SLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp -----------CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccc-cCCCcccCCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc
Confidence 344 67776665544 689999999999999887778999999999988754 355689999999999999988
Q ss_pred CcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC--CCchh
Q 044176 77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG--SFPRY 154 (362)
Q Consensus 77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~ 154 (362)
.|..|.++++|++|++++|.++ .+|..++ ++|++|++++|.+.. ++......+++|++|++++|.++. ..+..
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred CHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCccc
Confidence 8888999999999999999998 7887665 589999999999884 444433345899999999998863 45666
Q ss_pred hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhh
Q 044176 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE 234 (362)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 234 (362)
+..+ +|+.|++++|.+++ +|..+. ++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+.. +.
T Consensus 169 ~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~~~-~~--- 238 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELED--LLRYSKLYRLGLGHNQIRMIENGS-LS--- 238 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTS--STTCTTCSCCBCCSSCCCCCCTTG-GG---
T ss_pred ccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCCcCChhH-hh---
Confidence 7666 89999999998865 343332 68889999999887754443 377888999999998887544322 11
Q ss_pred hhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314 (362)
Q Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 314 (362)
.+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++
T Consensus 239 ---------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 239 ---------------------------------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp ---------------------------------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred ---------------------------------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 1678999999999998 677778999999999999999997
Q ss_pred Cchhhhhc------CCCcCEEEccCCccc--ccCchhhhhhHhhhccCCCccccC
Q 044176 315 SIPVSFAN------MIVLESLDLSSNKLH--GRIPEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 315 ~~~~~~~~------~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~l~~~~l~~n 361 (362)
..+..|.. .+.|+.|++++|++. +..|..|..+++|+.+ ++++|
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l---~l~~n 330 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI---QFGNY 330 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE---EC---
T ss_pred cChhHccccccccccccccceEeecCcccccccCcccccccchhhhh---hcccc
Confidence 76666655 367999999999987 5667677776666666 66666
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=273.49 Aligned_cols=243 Identities=19% Similarity=0.179 Sum_probs=139.4
Q ss_pred CCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC-----CCCCCCccEEEccCcccc
Q 044176 3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI-----LVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~~~~~ 74 (362)
+|.+.+.+++..+..+++|+.|++++|.++.+.+ ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.
T Consensus 57 ~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 57 SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp TTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred CCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 3333334444445555666666666666655543 24555666666666655422 334666666666666665
Q ss_pred cCCc-ccccCCCCCCEEEcccCcccccCCCCccccc-c------------------------------cccEEEcccccc
Q 044176 75 GQIP-PSIYSLSSLEYISLSHNNLSGTIPPCLGNFS-T------------------------------QLTILHLNNNYL 122 (362)
Q Consensus 75 ~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~-~------------------------------~L~~L~l~~~~~ 122 (362)
+..+ ..|+++++|++|++++|.+++..+..+..+. + .|+.|++++|.+
T Consensus 137 ~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 4433 3566666666666666665533332222110 0 144555554443
Q ss_pred cCcchhhhhcC-------------------------------------CCCccEEeccCCcccCCCchhhhcCCCCcEEE
Q 044176 123 QGRIPDAFANG-------------------------------------SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN 165 (362)
Q Consensus 123 ~~~~~~~~~~~-------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (362)
.+..+..+... .++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 217 ~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (844)
T 3j0a_A 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296 (844)
T ss_dssp STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence 32222222110 13466666666666655556667777777777
Q ss_pred ccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCC
Q 044176 166 VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD 245 (362)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~ 245 (362)
+++|.+.+..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+ ..+..+++|+.+++.++.
T Consensus 297 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN--FYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS--CSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCCEEEEETCC
T ss_pred CCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH--hcCCCCCCEEECCCCCCCccCh-hhhcCCCCCCEEECCCCC
Confidence 7777776666667777778888888877776544433 3667788888888887764333 335667777777777765
Q ss_pred ccc
Q 044176 246 GLY 248 (362)
Q Consensus 246 ~~~ 248 (362)
...
T Consensus 374 l~~ 376 (844)
T 3j0a_A 374 LTT 376 (844)
T ss_dssp SCC
T ss_pred CCc
Confidence 443
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-32 Score=259.69 Aligned_cols=345 Identities=19% Similarity=0.166 Sum_probs=246.0
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCccccc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFG 75 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~ 75 (362)
++|.++ .+|..++ ++|+.|++++|.++++++ ..+++|++|++++|.+.+.. +..+++|++|++++|.+.+
T Consensus 13 ~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 13 RSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp TTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred CCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 568888 8998765 789999999999999876 46789999999999998644 5568999999999999998
Q ss_pred CCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchh-hhhcCCCCccEEeccCCcccCCCch
Q 044176 76 QIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSNKLRGSFPR 153 (362)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~ 153 (362)
..+..|+++++|++|++++|.+++ ..|..+..+ ++|++|++++|.+.+.+|. .+.. +++|++|++++|.+++..|.
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTT
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhc-ccccCeeeccCCcccccChh
Confidence 887889999999999999999984 345667676 7999999999985445664 4554 58999999999999988899
Q ss_pred hhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccc-cccccCCcccEEeccCCcccCCCchhH---
Q 044176 154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV-NIMLPFEALRIIDLSHNEFTGFLPRWI--- 229 (362)
Q Consensus 154 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~--- 229 (362)
.+..+++|+.|++++|.........+..+++|++|++++|.+.+..... .....+++|+.+++++|.+.+..+..+
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 9999999999999999875433333467899999999999987642111 112446778888888887764433332
Q ss_pred HhhhhhhhhccccCCCcccccCCc-------c-----------------------------ccccce--eeee---cCcc
Q 044176 230 FVSLETMKNVDEKGSDGLYMQGEE-------D-----------------------------YYQDSV--TVTV---KGRD 268 (362)
Q Consensus 230 ~~~~~~l~~l~~~~~~~~~~~~~~-------~-----------------------------~~~~~~--~~~~---~~~~ 268 (362)
...+.+++.+++..+......... . ...... .... ....
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip 326 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence 123344555555444322111000 0 000000 0000 1111
Q ss_pred hHhhhhcccccEEeccCcccCCCcch---hhcCCCCCcEEEccCCcCccCch--hhhhcCCCcCEEEccCCcccccCchh
Q 044176 269 LVLKRIITIFTTIDLSSNQFQGEIPQ---VLGDFKSLIVLNLSHNGLTGSIP--VSFANMIVLESLDLSSNKLHGRIPEQ 343 (362)
Q Consensus 269 ~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~ 343 (362)
......+++|+.|++++|++++..+. .++.+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|+.
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 405 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh
Confidence 22223477888888888888765532 35677888888888888874322 45778888888888888888 56776
Q ss_pred hhhhHhhhcc
Q 044176 344 FVDAEICSSF 353 (362)
Q Consensus 344 ~~~l~~L~~l 353 (362)
+..+++|++|
T Consensus 406 ~~~~~~L~~L 415 (549)
T 2z81_A 406 CQWPEKMRFL 415 (549)
T ss_dssp CCCCTTCCEE
T ss_pred hcccccccEE
Confidence 7666666665
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.3e-31 Score=232.21 Aligned_cols=287 Identities=20% Similarity=0.228 Sum_probs=227.1
Q ss_pred CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176 19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN 95 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 95 (362)
.+++.++++++.++.++....++++.|++++|.+++.. +..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 37899999999999998877789999999999888653 455899999999999999888889999999999999999
Q ss_pred cccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC--CCchhhhcCCCCcEEEccCCCCCC
Q 044176 96 NLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG--SFPRYLADCTGLEVVNVGNNMIGD 173 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 173 (362)
.++ .+|..++ ++|++|++++|.+....+..+.. +++|++|++++|.+.. ..+..+..+++|+.|++++|.+++
T Consensus 111 ~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 111 QLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred cCC-ccChhhc---ccccEEECCCCcccccCHhHhcC-CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 998 7887664 58999999999988544445554 4899999999998863 556788889999999999998864
Q ss_pred CcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCc
Q 044176 174 TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253 (362)
Q Consensus 174 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 253 (362)
.|..+ .++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. +.
T Consensus 186 -l~~~~--~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~---------------------- 237 (330)
T 1xku_A 186 -IPQGL--PPSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGS-LA---------------------- 237 (330)
T ss_dssp -CCSSC--CTTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTT-GG----------------------
T ss_pred -CCccc--cccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhh-cc----------------------
Confidence 34333 278999999999887654443 477889999999999887543322 11
Q ss_pred cccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhc------CCCcC
Q 044176 254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFAN------MIVLE 327 (362)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~ 327 (362)
.+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..|.. .+.++
T Consensus 238 --------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 238 --------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp --------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred --------------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 1678999999999998 67778899999999999999999776666654 37899
Q ss_pred EEEccCCcccc--cCchhhhhhHhhhccCCCccccCC
Q 044176 328 SLDLSSNKLHG--RIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 328 ~L~l~~n~~~~--~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
.+++++|++.. ..|..|..+..++.+ ++++|+
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l---~L~~N~ 330 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAV---QLGNYK 330 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGE---EC----
T ss_pred ceEeecCcccccccCccccccccceeEE---EecccC
Confidence 99999999864 456677777666666 788774
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.1e-32 Score=236.05 Aligned_cols=249 Identities=26% Similarity=0.369 Sum_probs=208.3
Q ss_pred CCccEEEccCccccc--CCcccccCCCCCCEEEccc-CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176 61 PSTRAFLFSNNKLFG--QIPPSIYSLSSLEYISLSH-NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137 (362)
Q Consensus 61 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 137 (362)
.++++|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|..+..+ ++|++|++++|.+.+..|..+... ++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l-~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQI-KTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGC-TTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCHHHhCC-CCC
Confidence 578888888888887 7888999999999999995 88887888888887 789999999999987788888765 899
Q ss_pred cEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCC-CCCeEEccCCcCCCccccccccccCCcccEEec
Q 044176 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLP-GLKILVLRSNRFYGPLCEVNIMLPFEALRIIDL 216 (362)
Q Consensus 138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 216 (362)
++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..++ +|++|++++|.+.+..+..+ ..++ |++|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEEC
Confidence 9999999999988899999999999999999999878888888887 99999999999886555554 4454 999999
Q ss_pred cCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhh
Q 044176 217 SHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL 296 (362)
Q Consensus 217 ~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 296 (362)
++|.+.+..+..+ . .+++|+.|++++|.+++..+. +
T Consensus 205 s~N~l~~~~~~~~-~------------------------------------------~l~~L~~L~L~~N~l~~~~~~-~ 240 (313)
T 1ogq_A 205 SRNMLEGDASVLF-G------------------------------------------SDKNTQKIHLAKNSLAFDLGK-V 240 (313)
T ss_dssp CSSEEEECCGGGC-C------------------------------------------TTSCCSEEECCSSEECCBGGG-C
T ss_pred cCCcccCcCCHHH-h------------------------------------------cCCCCCEEECCCCceeeecCc-c
Confidence 9999886544331 1 167799999999999866555 7
Q ss_pred cCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 297 GDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 297 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
..+++|++|++++|++++..|..+..+++|++|++++|++++.+|+. ..+++|+.+ ++.+|+
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l---~l~~N~ 302 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS---AYANNK 302 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG---GTCSSS
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH---HhcCCC
Confidence 78899999999999999889999999999999999999999888875 555555555 777764
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-31 Score=255.38 Aligned_cols=354 Identities=21% Similarity=0.191 Sum_probs=238.1
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~ 74 (362)
|++|+|+ .+|+..|..+++|+.|++++|+|+.+++. .+++|++|++++|.+++. .+.++++|++|++++|.++
T Consensus 59 Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 59 LSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred eeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 6888998 78888888889999999999999888773 567889999999988753 3566888999999999888
Q ss_pred cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcC--------------------
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG-------------------- 133 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------- 133 (362)
+..+..|+++++|++|++++|.++. ..|..+..+ ++|++|++++|++.+..+..+...
T Consensus 138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred CCChhhhhcCcccCeeccccCccccCCCchhhccc-hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 7777778889999999999998873 345556666 688888888887654333222110
Q ss_pred --------------------------------------------------------------------------------
Q 044176 134 -------------------------------------------------------------------------------- 133 (362)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (362)
T Consensus 217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 296 (635)
T 4g8a_A 217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 296 (635)
T ss_dssp CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence
Q ss_pred ------------------------------CCCccEEeccCCcccCCC-------------------chhhhcCCCCcEE
Q 044176 134 ------------------------------SCDLRSLGLNSNKLRGSF-------------------PRYLADCTGLEVV 164 (362)
Q Consensus 134 ------------------------------~~~L~~L~l~~~~~~~~~-------------------~~~~~~l~~L~~L 164 (362)
...++.|.+.++.+.... +.....++.|+.+
T Consensus 297 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L 376 (635)
T 4g8a_A 297 GIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 376 (635)
T ss_dssp ECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEE
T ss_pred chhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccc
Confidence 001122222222211100 0011235677778
Q ss_pred EccCCCCCCC--cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcccc
Q 044176 165 NVGNNMIGDT--FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEK 242 (362)
Q Consensus 165 ~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~ 242 (362)
++++|.+... .+..+..+.+|+.+++..+....... .+..+++|+.+++..+......+...+..+..+..+++.
T Consensus 377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls 453 (635)
T 4g8a_A 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453 (635)
T ss_dssp ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS---CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred hhhccccccccccccchhhhhhhhhhhccccccccccc---cccccccccchhhhhcccccccccccccccccccccccc
Confidence 8877766432 23345566778888877765543222 234566677777766665555555555666666666665
Q ss_pred CCCcccccCC-ccccccceeeeecC------cchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC
Q 044176 243 GSDGLYMQGE-EDYYQDSVTVTVKG------RDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS 315 (362)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 315 (362)
.+........ .............. ........+++|+.|++++|++++..|..|.++++|++|+|++|++++.
T Consensus 454 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l 533 (635)
T 4g8a_A 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533 (635)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred ccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence 5544332211 11111111111111 1112234478999999999999988899999999999999999999988
Q ss_pred chhhhhcCCCcCEEEccCCcccccCchhhhhh-HhhhccCCCccccCC
Q 044176 316 IPVSFANMIVLESLDLSSNKLHGRIPEQFVDA-EICSSFARPDLYTNA 362 (362)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~l~~~~l~~n~ 362 (362)
.+..|..+++|+.|++++|++++..|+.|..+ ++|++| ++++|.
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L---~L~~Np 578 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL---NLTQND 578 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE---ECTTCC
T ss_pred ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE---EeeCCC
Confidence 88899999999999999999999889888877 466666 777774
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7e-32 Score=265.72 Aligned_cols=311 Identities=17% Similarity=0.175 Sum_probs=224.5
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCC----CCCCCCCCCccEEEccCcccc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQ----GTILVPPPSTRAFLFSNNKLF 74 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~----~~~~~~~~~L~~L~l~~~~~~ 74 (362)
++++++ .||. ..++++.|++++|.|+.+.+ ..+++|+.|++++|... ...+..+++|++|++++|.+.
T Consensus 12 s~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 12 RFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp SCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred cCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 467788 7887 23889999999999998876 46788999999999543 334666899999999999999
Q ss_pred cCCcccccCCCCCCEEEcccCcccccCCCC--cccccccccEEEcccccccCcch-hhhhcCCCCccEEeccCCcccCCC
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPC--LGNFSTQLTILHLNNNYLQGRIP-DAFANGSCDLRSLGLNSNKLRGSF 151 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 151 (362)
+..|..|.++++|++|++++|.+++.++.. +..+ ++|++|++++|.+.+..+ ..+.. +++|++|++++|.+++..
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGK-LNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGT-CSSCCEEEEESSCCCCCC
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhh-CCCCCEEECCCCcCCeeC
Confidence 888999999999999999999998655554 6666 799999999999876544 34554 589999999999998888
Q ss_pred chhhhcC--CCCcEEEccCCCCCCCcchhccCCCC------CCeEEccCCcCCCccccccc-ccc---------------
Q 044176 152 PRYLADC--TGLEVVNVGNNMIGDTFPSWLGSLPG------LKILVLRSNRFYGPLCEVNI-MLP--------------- 207 (362)
Q Consensus 152 ~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~n~~~~~~~~~~~-~~~--------------- 207 (362)
+..+..+ ++|+.|++++|.+.+..+..++.+++ |+.|++++|.+.+..+.... ...
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 8888877 89999999999987777666666554 89999999876644332210 001
Q ss_pred --------------------CCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCc
Q 044176 208 --------------------FEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGR 267 (362)
Q Consensus 208 --------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (362)
.++|+.|++++|.+.+..+. .+..+++++.+++..+......
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~----------------- 306 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIA----------------- 306 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEEC-----------------
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCC-----------------
Confidence 24566666666665533332 2455555565555555322211
Q ss_pred chHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 268 DLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
......+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++
T Consensus 307 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 307 -DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp -TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred -hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 1112235667777777777776666677777777777777777776666667777777777777777763
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=3.1e-31 Score=239.09 Aligned_cols=282 Identities=21% Similarity=0.222 Sum_probs=171.8
Q ss_pred CCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEE
Q 044176 18 WKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYIS 91 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 91 (362)
+++++.++++++.++.++. ..+++|++|++++|.+.+. .+..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 3778888888888887776 3567788888888877653 345577888888888888777777778888888888
Q ss_pred cccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC
Q 044176 92 LSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171 (362)
Q Consensus 92 L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (362)
+++|.++ .+|..++...++|++|++++|.+....+..+.. +++|++|++++|.+++. .+..+++|+.+++++|.+
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS-CTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccC-CCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 8888887 666655333367888888888877544545544 37788888888877643 245567777777777766
Q ss_pred CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC
Q 044176 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG 251 (362)
Q Consensus 172 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 251 (362)
.+ +...++|++|++++|.+..... ...++|+.|++++|.+.+. ..+..+++++.+++.++......
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~- 264 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIM- 264 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEE-
T ss_pred cc-----cCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcC-
Confidence 32 2234456666666665544211 1234566666666665532 12455555565555555322110
Q ss_pred CccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEc
Q 044176 252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDL 331 (362)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 331 (362)
......+++|+.|++++|++++ ++..+..+++|+.|++++|++. .+|..+..+++|++|++
T Consensus 265 -----------------~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 265 -----------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp -----------------SGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred -----------------hhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 0111124555555555555552 2333344555555555555555 34444555555555555
Q ss_pred cCCccc
Q 044176 332 SSNKLH 337 (362)
Q Consensus 332 ~~n~~~ 337 (362)
++|+++
T Consensus 326 ~~N~i~ 331 (390)
T 3o6n_A 326 DHNSIV 331 (390)
T ss_dssp CSSCCC
T ss_pred CCCccc
Confidence 555555
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=2.5e-31 Score=250.93 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=91.2
Q ss_pred ccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccC
Q 044176 206 LPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSS 285 (362)
Q Consensus 206 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (362)
..+++|++|++++|.+.+..+.. +..+++++.+++.++....+.. .......+++|+.|++++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~----------------~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFK----------------VALMTKNMSSLETLDVSL 412 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTH----------------HHHTTTTCTTCCEEECTT
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCccc----------------chhhhcCCCCCCEEECCC
Confidence 34556666666666666544433 4555666666665553222111 011123478999999999
Q ss_pred cccCCCcc-hhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 286 NQFQGEIP-QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 286 n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
|.+++.+| ..+..+++|+.|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++| ++++|+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L---~L~~N~ 484 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL---NVASNQ 484 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE---ECCSSC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE---ECCCCC
Confidence 99987444 4578889999999999999865555443 79999999999999 677766677777777 666664
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=9.3e-31 Score=236.00 Aligned_cols=284 Identities=17% Similarity=0.140 Sum_probs=232.2
Q ss_pred CcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE
Q 044176 38 PWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114 (362)
Q Consensus 38 ~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 114 (362)
.+++++.++++++.+.... +..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+ ++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-CCCCE
Confidence 5689999999999887644 3448999999999999998888899999999999999999995445556666 79999
Q ss_pred EEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCc
Q 044176 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194 (362)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 194 (362)
|++++|.+. .+|......+++|++|++++|.+++..+..+..+++|+.|++++|.+++. .+..+++|+.+++++|.
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999998 66766544458999999999999977788899999999999999998654 25678999999999998
Q ss_pred CCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhh
Q 044176 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (362)
+.+. ...++|++|++++|.+... +.. ..++++.+++.++..... .....
T Consensus 198 l~~~-------~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--------------------~~l~~ 246 (390)
T 3o6n_A 198 LSTL-------AIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--------------------AWLLN 246 (390)
T ss_dssp CSEE-------ECCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--------------------GGGGG
T ss_pred cccc-------CCCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--------------------HHHcC
Confidence 7642 3346899999999998743 322 246788888777753221 12233
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 354 (362)
+++|+.|++++|.+++..+..+..+++|+.|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L- 323 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL- 323 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE-
Confidence 7899999999999998889999999999999999999984 6677788999999999999999 577777777777766
Q ss_pred CCccccCC
Q 044176 355 RPDLYTNA 362 (362)
Q Consensus 355 ~~~l~~n~ 362 (362)
++++|+
T Consensus 324 --~L~~N~ 329 (390)
T 3o6n_A 324 --YLDHNS 329 (390)
T ss_dssp --ECCSSC
T ss_pred --ECCCCc
Confidence 566653
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=5.4e-30 Score=236.22 Aligned_cols=292 Identities=24% Similarity=0.308 Sum_probs=193.0
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIP 78 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 78 (362)
|++|.++ .+++ +..+++|+.|++++|.++.+++ ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+. +
T Consensus 75 Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~ 150 (466)
T 1o6v_A 75 FSNNQLT-DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-S 150 (466)
T ss_dssp CCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC-G
T ss_pred CCCCccC-Cchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC-h
Confidence 5788888 4555 5566999999999999988876 57888999999999887654 55588999999998888743 2
Q ss_pred cccc---------------------CCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176 79 PSIY---------------------SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137 (362)
Q Consensus 79 ~~~~---------------------~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 137 (362)
.+. ++++|++|++++|.++ .++ .+..+ ++|++|++++|.+.+..| +.. +++|
T Consensus 151 -~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l-~~L~~L~l~~n~l~~~~~--~~~-l~~L 223 (466)
T 1o6v_A 151 -ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS-VLAKL-TNLESLIATNNQISDITP--LGI-LTNL 223 (466)
T ss_dssp -GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGGGC-TTCSEEECCSSCCCCCGG--GGG-CTTC
T ss_pred -hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh-hhccC-CCCCEEEecCCccccccc--ccc-cCCC
Confidence 344 4455555555555554 222 23333 455555555555553322 222 2556
Q ss_pred cEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEecc
Q 044176 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLS 217 (362)
Q Consensus 138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 217 (362)
++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 224 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 224 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELN 295 (466)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECC
T ss_pred CEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcC
Confidence 6666666555532 345555666666666665544333 5556666666666665554322 3455666666666
Q ss_pred CCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhc
Q 044176 218 HNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297 (362)
Q Consensus 218 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 297 (362)
+|.+.+..+ +..+++|+.+++.++...... ....+++|+.|++++|++++. ..+.
T Consensus 296 ~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--------------------~~~~l~~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 296 ENQLEDISP---ISNLKNLTYLTLYFNNISDIS--------------------PVSSLTKLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp SSCCSCCGG---GGGCTTCSEEECCSSCCSCCG--------------------GGGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred CCcccCchh---hcCCCCCCEEECcCCcCCCch--------------------hhccCccCCEeECCCCccCCc--hhhc
Confidence 666654332 445566666666555322111 123488999999999999865 4688
Q ss_pred CCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 298 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
.+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999999997766 8999999999999999996
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-30 Score=247.20 Aligned_cols=281 Identities=21% Similarity=0.222 Sum_probs=150.0
Q ss_pred CCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEc
Q 044176 19 KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISL 92 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 92 (362)
.+++.++++++.++.+++ ..+++|+.|++++|.+.+. .+..+++|++|++++|.+.+..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 566777777777776665 3456677777777766643 2344667777777777776666666677777777777
Q ss_pred ccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176 93 SHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (362)
++|.++ .+|..++...++|++|++++|.+.+..|..+... ++|++|++++|.+++. .+..++.|+.|++++|.+.
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 777776 5555443222567777777777665444445443 6677777777766643 2344566666666666553
Q ss_pred CCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCC
Q 044176 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252 (362)
Q Consensus 173 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 252 (362)
+ +...++|+.|++++|.+...... ..++|+.|++++|.+.+. ..+..+++|+.+++.++......
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~-- 270 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIM-- 270 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEE--
T ss_pred c-----ccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCC--
Confidence 2 22334555555555554432211 123455555555555432 12344445555554444321110
Q ss_pred ccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEcc
Q 044176 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS 332 (362)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 332 (362)
......+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+++
T Consensus 271 ----------------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 271 ----------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp ----------------SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred ----------------HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence 0111114445555555555442 2333334455555555555554 344444445555555555
Q ss_pred CCccc
Q 044176 333 SNKLH 337 (362)
Q Consensus 333 ~n~~~ 337 (362)
+|+++
T Consensus 333 ~N~l~ 337 (597)
T 3oja_B 333 HNSIV 337 (597)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 55544
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.2e-29 Score=230.69 Aligned_cols=297 Identities=20% Similarity=0.179 Sum_probs=189.6
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCccc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPS 80 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 80 (362)
|++|++++ +| + +..+++|+.|++++|+++.++...+++|++|++++|.+++..+..+++|++|++++|.+.+. +
T Consensus 49 Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l-~-- 122 (457)
T 3bz5_A 49 CHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL-D-- 122 (457)
T ss_dssp CCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC-C--
T ss_pred ccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee-c--
Confidence 45677773 44 2 34457777777777777777656677777777777777766666677777777777777653 2
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (362)
++.+++|++|++++|+++ .++ +..+ ++|++|++++|...+.++ +.. +++|++|++++|.+++ ++ +..++.
T Consensus 123 ~~~l~~L~~L~l~~N~l~-~l~--l~~l-~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLT-EID--VSHN-TQLTELDCHLNKKITKLD--VTP-QTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp CTTCTTCCEEECTTSCCS-CCC--CTTC-TTCCEEECTTCSCCCCCC--CTT-CTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred CCCCCcCCEEECCCCccc-eec--cccC-CcCCEEECCCCCcccccc--ccc-CCcCCEEECCCCccce-ec--cccCCC
Confidence 667777777777777776 343 4444 567777777774333332 222 3677777777777774 33 666777
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176 161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240 (362)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 240 (362)
|+.|++++|.+++. .++.+++|++|++++|.+++. + +..+++|+.|++++|.+.+.. ...+++++.++
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~ 260 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLH 260 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEe
Confidence 77777777777554 266777777788877777762 2 356777778888777777532 22344454444
Q ss_pred ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcch--------hhcCCCCCcEEEccCCcC
Q 044176 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ--------VLGDFKSLIVLNLSHNGL 312 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~L~~L~l~~n~i 312 (362)
+..+....+.-....... ......+++|+.|++++|...+.+|. .++.+++|++|++++|++
T Consensus 261 l~~n~L~~L~l~~n~~~~----------~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 261 CIQTDLLEIDLTHNTQLI----------YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330 (457)
T ss_dssp CTTCCCSCCCCTTCTTCC----------EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred ccCCCCCEEECCCCccCC----------cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence 443322211110000000 00112367788888888875444332 255667888888888888
Q ss_pred ccCchhhhhcCCCcCEEEccCCcccc
Q 044176 313 TGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 313 ~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
++. .+..+++|+.|++++|++++
T Consensus 331 ~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 331 TEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCCB
T ss_pred ccc---ccccCCcCcEEECCCCCCCC
Confidence 863 27888888888888888885
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.3e-30 Score=241.50 Aligned_cols=283 Identities=17% Similarity=0.137 Sum_probs=231.9
Q ss_pred CcCCCcEEEccCCcCCCCCC---CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE
Q 044176 38 PWKNITVLNLQNNTIQGTIL---VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114 (362)
Q Consensus 38 ~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 114 (362)
.+.+++.+++++|.+..... ..+++|+.|++++|.+.+..+..|+.+++|++|++++|.+++..|..+..+ ++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC-CCCCE
Confidence 56789999999998876443 348999999999999998888899999999999999999995444455666 79999
Q ss_pred EEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCc
Q 044176 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194 (362)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 194 (362)
|++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.. +..+++|+.+++++|.
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 999999998 566665444589999999999999888888999999999999999986642 5568999999999998
Q ss_pred CCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhh
Q 044176 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (362)
+.+. ...++|+.|++++|.+....+ .. .++++.+++.++..... .....
T Consensus 204 l~~l-------~~~~~L~~L~ls~n~l~~~~~-~~---~~~L~~L~L~~n~l~~~--------------------~~l~~ 252 (597)
T 3oja_B 204 LSTL-------AIPIAVEELDASHNSINVVRG-PV---NVELTILKLQHNNLTDT--------------------AWLLN 252 (597)
T ss_dssp CSEE-------ECCTTCSEEECCSSCCCEEEC-SC---CSCCCEEECCSSCCCCC--------------------GGGGG
T ss_pred cccc-------cCCchhheeeccCCccccccc-cc---CCCCCEEECCCCCCCCC--------------------hhhcc
Confidence 7642 335689999999999874332 21 25677888777753221 12234
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 354 (362)
+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L- 329 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL- 329 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE-
Confidence 7899999999999998889999999999999999999995 6777788999999999999999 678888777777776
Q ss_pred CCccccC
Q 044176 355 RPDLYTN 361 (362)
Q Consensus 355 ~~~l~~n 361 (362)
++++|
T Consensus 330 --~L~~N 334 (597)
T 3oja_B 330 --YLDHN 334 (597)
T ss_dssp --ECCSS
T ss_pred --ECCCC
Confidence 55555
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=9.9e-30 Score=243.53 Aligned_cols=347 Identities=20% Similarity=0.263 Sum_probs=246.6
Q ss_pred CcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCC
Q 044176 4 NRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQI 77 (362)
Q Consensus 4 n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~ 77 (362)
-+++ .||..+. ++++.|++++|+|+.+++ ..+++|++|++++|.|++. .+..+++|++|++++|.+....
T Consensus 41 ~~l~-~vP~~lp---~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 41 LNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp SCCS-SCCSSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCcC-ccCCCCC---cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 3577 7887654 579999999999999987 4678999999999998854 4666999999999999999887
Q ss_pred cccccCCCCCCEEEcccCcccccCCC-CcccccccccEEEcccccccCc-chhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176 78 PPSIYSLSSLEYISLSHNNLSGTIPP-CLGNFSTQLTILHLNNNYLQGR-IPDAFANGSCDLRSLGLNSNKLRGSFPRYL 155 (362)
Q Consensus 78 ~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 155 (362)
+..|.++++|++|++++|+++ .++. .+..+ ++|++|++++|.+... .|..+.. ++.|++|++++|.+++..+..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLA-SLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCC-CSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCC-CCChhhhhcC-cccCeeccccCccccCCCchhhcc-chhhhhhcccCccccccccccc
Confidence 788999999999999999999 5665 45555 7999999999998743 4565555 4899999999998764333332
Q ss_pred hcCC----------------------------------------------------------------------------
Q 044176 156 ADCT---------------------------------------------------------------------------- 159 (362)
Q Consensus 156 ~~l~---------------------------------------------------------------------------- 159 (362)
..+.
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 2111
Q ss_pred -------------------------------------------------------CCcEEEccCCCCCCCcc--------
Q 044176 160 -------------------------------------------------------GLEVVNVGNNMIGDTFP-------- 176 (362)
Q Consensus 160 -------------------------------------------------------~L~~L~l~~~~~~~~~~-------- 176 (362)
.++.|++.++.+.....
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~ 353 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 353 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhh
Confidence 12222222222111000
Q ss_pred -----------hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCC
Q 044176 177 -----------SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD 245 (362)
Q Consensus 177 -----------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~ 245 (362)
.....+++|+.++++.|.+............+.+++.+++..+......+ .+..++.++.+++..+.
T Consensus 354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS--CCTTCTTCCEEECTTSE
T ss_pred cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc--cccccccccchhhhhcc
Confidence 00113456677777777665433333334567899999999988764332 25667888888777665
Q ss_pred cccccCCccc--cccceeeee-----cCcchHhhhhcccccEEeccCccc-CCCcchhhcCCCCCcEEEccCCcCccCch
Q 044176 246 GLYMQGEEDY--YQDSVTVTV-----KGRDLVLKRIITIFTTIDLSSNQF-QGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317 (362)
Q Consensus 246 ~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 317 (362)
.........+ ......... ..........++.++.|++++|.+ ....|..+..+++|+.|+|++|++++..|
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 4433321111 111111111 112223344578999999999975 44567788999999999999999998889
Q ss_pred hhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 318 VSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 318 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
..|.++++|++|+|++|++++..|..|..+++|++| ++++|+
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L---~Ls~N~ 553 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL---DYSLNH 553 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE---ECTTSC
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE---ECCCCc
Confidence 999999999999999999998888889988888877 777764
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.9e-31 Score=228.69 Aligned_cols=249 Identities=26% Similarity=0.421 Sum_probs=216.1
Q ss_pred CCCcEEEccCCcCCC--CC---CCCCCCccEEEccC-cccccCCcccccCCCCCCEEEcccCcccccCCCCccccccccc
Q 044176 40 KNITVLNLQNNTIQG--TI---LVPPPSTRAFLFSN-NKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLT 113 (362)
Q Consensus 40 ~~L~~L~l~~n~~~~--~~---~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 113 (362)
.+++.|++++|.+.+ .. +..+++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..+ ++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-TTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC-CCCC
Confidence 578899999998876 33 33489999999995 88988899999999999999999999987888888887 7999
Q ss_pred EEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC-CCcEEEccCCCCCCCcchhccCCCCCCeEEccC
Q 044176 114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT-GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192 (362)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 192 (362)
+|++++|.+.+.+|..+... ++|++|++++|.+++..|..++.++ .|+.|++++|.+.+..|..+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 99999999988888888775 8999999999999888899999998 999999999999878888888887 99999999
Q ss_pred CcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhh
Q 044176 193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272 (362)
Q Consensus 193 n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (362)
|.+.+..+.. +..+++|+.|++++|.+.+..+..
T Consensus 207 N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------------------- 240 (313)
T 1ogq_A 207 NMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKV-------------------------------------------- 240 (313)
T ss_dssp SEEEECCGGG--CCTTSCCSEEECCSSEECCBGGGC--------------------------------------------
T ss_pred CcccCcCCHH--HhcCCCCCEEECCCCceeeecCcc--------------------------------------------
Confidence 9988755544 378899999999999987543321
Q ss_pred hhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCc-ccc
Q 044176 273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNK-LHG 338 (362)
Q Consensus 273 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-~~~ 338 (362)
..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 01578999999999999889999999999999999999999888876 889999999999998 553
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.3e-29 Score=220.69 Aligned_cols=269 Identities=18% Similarity=0.215 Sum_probs=221.5
Q ss_pred cCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176 39 WKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118 (362)
Q Consensus 39 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~ 118 (362)
..+++.++++++.++.......+.++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+ ++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC-CCCCEEECC
Confidence 3479999999998886555557899999999999998877789999999999999999995557778777 799999999
Q ss_pred cccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC--CcchhccCCCCCCeEEccCCcCC
Q 044176 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD--TFPSWLGSLPGLKILVLRSNRFY 196 (362)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~ 196 (362)
+|.+. .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99998 6676543 689999999999997777789999999999999999854 55677889999999999999987
Q ss_pred CccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcc
Q 044176 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIIT 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (362)
...... .++|++|++++|.+.+..+..+ . .++
T Consensus 185 ~l~~~~-----~~~L~~L~l~~n~l~~~~~~~~-~------------------------------------------~l~ 216 (330)
T 1xku_A 185 TIPQGL-----PPSLTELHLDGNKITKVDAASL-K------------------------------------------GLN 216 (330)
T ss_dssp SCCSSC-----CTTCSEEECTTSCCCEECTGGG-T------------------------------------------TCT
T ss_pred cCCccc-----cccCCEEECCCCcCCccCHHHh-c------------------------------------------CCC
Confidence 633221 3789999999999885444321 1 167
Q ss_pred cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhh---Hhhhcc
Q 044176 277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDA---EICSSF 353 (362)
Q Consensus 277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~l 353 (362)
+|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|... .....+
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 8999999999999877778999999999999999999 788899999999999999999998776677543 112333
Q ss_pred CCCccccC
Q 044176 354 ARPDLYTN 361 (362)
Q Consensus 354 ~~~~l~~n 361 (362)
...++++|
T Consensus 296 ~~l~l~~N 303 (330)
T 1xku_A 296 SGVSLFSN 303 (330)
T ss_dssp SEEECCSS
T ss_pred cceEeecC
Confidence 33466666
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.6e-29 Score=227.51 Aligned_cols=303 Identities=19% Similarity=0.156 Sum_probs=235.7
Q ss_pred ccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176 16 QRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH 94 (362)
Q Consensus 16 ~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 94 (362)
..+++|+.|++++|.+++++. ..+++|++|++++|.+++..+..+++|++|++++|.+.+. + ++++++|++|++++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 345999999999999999875 5789999999999999988777899999999999999864 3 88999999999999
Q ss_pred CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176 95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174 (362)
Q Consensus 95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (362)
|+++ .++ +..+ ++|++|++++|++++ ++ +. .+++|++|++++|...+.+ .+..+++|+.|++++|.+++.
T Consensus 116 N~l~-~l~--~~~l-~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 116 NKLT-KLD--VSQN-PLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp SCCS-CCC--CTTC-TTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CcCC-eec--CCCC-CcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 9998 565 5666 799999999999985 43 33 3489999999999654444 577899999999999999763
Q ss_pred cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcc
Q 044176 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254 (362)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 254 (362)
+ +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+ +| +..+++++.+++.++....... .
T Consensus 186 -~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~--~ 251 (457)
T 3bz5_A 186 -D--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDV--S 251 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCC--T
T ss_pred -c--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCH--H
Confidence 3 78899999999999999874 25788999999999999996 45 6678899999998886443321 0
Q ss_pred ccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchh--------hhhcCCCc
Q 044176 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV--------SFANMIVL 326 (362)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~--------~~~~~~~L 326 (362)
.+........ ...+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|
T Consensus 252 ~l~~L~~L~l---------~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 252 TLSKLTTLHC---------IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp TCTTCCEEEC---------TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred HCCCCCEEec---------cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 0111000000 01346667777776655555 46789999999999986554443 26777999
Q ss_pred CEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 327 ESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 327 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
++|++++|++++. + +..+++|+.| ++++|+
T Consensus 321 ~~L~L~~N~l~~l-~--l~~l~~L~~L---~l~~N~ 350 (457)
T 3bz5_A 321 VYLYLNNTELTEL-D--VSHNTKLKSL---SCVNAH 350 (457)
T ss_dssp CEEECTTCCCSCC-C--CTTCTTCSEE---ECCSSC
T ss_pred CEEECCCCccccc-c--cccCCcCcEE---ECCCCC
Confidence 9999999999973 3 6777766666 666653
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.5e-29 Score=219.43 Aligned_cols=253 Identities=18% Similarity=0.246 Sum_probs=210.8
Q ss_pred CCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc
Q 044176 40 KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119 (362)
Q Consensus 40 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~ 119 (362)
.+++.++++++.+........++++.|++++|.+....+..|.++++|++|++++|.+++..|..+..+ ++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL-RKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC-TTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc-CCCCEEECCC
Confidence 479999999999886555557899999999999998878889999999999999999985556677776 7999999999
Q ss_pred ccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC--CcchhccCCCCCCeEEccCCcCCC
Q 044176 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD--TFPSWLGSLPGLKILVLRSNRFYG 197 (362)
Q Consensus 120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~ 197 (362)
|.+. .+|..+. ++|++|++++|.++...+..+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|.+++
T Consensus 112 n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9998 6676544 689999999999997666778999999999999999853 556667777 99999999999886
Q ss_pred ccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccc
Q 044176 198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (362)
..... .++|++|++++|.+.+..+.. +. .+++
T Consensus 187 l~~~~-----~~~L~~L~l~~n~i~~~~~~~-l~------------------------------------------~l~~ 218 (332)
T 2ft3_A 187 IPKDL-----PETLNELHLDHNKIQAIELED-LL------------------------------------------RYSK 218 (332)
T ss_dssp CCSSS-----CSSCSCCBCCSSCCCCCCTTS-ST------------------------------------------TCTT
T ss_pred cCccc-----cCCCCEEECCCCcCCccCHHH-hc------------------------------------------CCCC
Confidence 33321 268999999999887543322 11 1677
Q ss_pred ccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhh
Q 044176 278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDA 347 (362)
Q Consensus 278 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 347 (362)
|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 999999999999888888999999999999999999 788889999999999999999998777677653
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.1e-27 Score=219.26 Aligned_cols=290 Identities=23% Similarity=0.266 Sum_probs=181.3
Q ss_pred CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176 19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS 98 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 98 (362)
++|+.|++++|.++.++. .+++|+.|++++|.+.+.. ...++|++|++++|.+.+ +| .|+++++|++|++++|+++
T Consensus 91 ~~L~~L~l~~n~l~~lp~-~~~~L~~L~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCSEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCC-SCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCcCCcccc-ccCCCcEEECCCCccCccc-CCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc
Confidence 556666666666666543 3466777777777666422 123677888888887775 55 4777888888888888777
Q ss_pred ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176 99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178 (362)
Q Consensus 99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 178 (362)
.+|... ++|++|++++|.+.+ +| .+.. +++|++|++++|.+++ +|.. .++|+.|++++|.+. .+| .
T Consensus 167 -~lp~~~----~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~ 232 (454)
T 1jl5_A 167 -KLPDLP----PSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-E 232 (454)
T ss_dssp -CCCCCC----TTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-C
T ss_pred -ccCCCc----ccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-c
Confidence 455432 467788888887763 55 3443 4778888888877764 3322 247778888887775 344 3
Q ss_pred ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcccccc
Q 044176 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258 (362)
Q Consensus 179 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 258 (362)
++.+++|++|++++|.+.+.. . .+++|+.|++++|.+.+ .+.. .++++.+++.++....+...... ..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~-~-----~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~~~~~~-L~ 300 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLP-D-----LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGLSELPPN-LY 300 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCC-S-----CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEESCCCTT-CC
T ss_pred cCCCCCCCEEECCCCcCCccc-c-----cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcccCcCCc-CC
Confidence 777888888888888776522 1 13577777777777764 3322 35677777776654433221100 00
Q ss_pred ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
.+......... +...+++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++
T Consensus 301 ~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 301 YLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred EEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence 11111111110 11123578888888888874 4432 577888888888887 3554 46788888888888887
Q ss_pred --cCchhhhhh
Q 044176 339 --RIPEQFVDA 347 (362)
Q Consensus 339 --~~~~~~~~l 347 (362)
.+|..+..+
T Consensus 372 l~~ip~~l~~L 382 (454)
T 1jl5_A 372 FPDIPESVEDL 382 (454)
T ss_dssp CCCCCTTCCEE
T ss_pred CCCChHHHHhh
Confidence 567777666
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=223.81 Aligned_cols=279 Identities=19% Similarity=0.191 Sum_probs=185.1
Q ss_pred CCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176 18 WKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH 94 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 94 (362)
++.....+++++.++.+|....++|+.|++++|.+++. .+..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 46666678888888888776667788888888777643 244467777777777777766666677777777777777
Q ss_pred CcccccCCCC-cccccccccEEEcccccccCcchh-hhhcCCCCccEEeccCC-cccCCCchhhhcCCCCcEEEccCCCC
Q 044176 95 NNLSGTIPPC-LGNFSTQLTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSN-KLRGSFPRYLADCTGLEVVNVGNNMI 171 (362)
Q Consensus 95 ~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (362)
|+++ .++.. +..+ ++|++|++++|++. .+|. .....+++|++|++++| .+....+..+..+++|+.|++++|.+
T Consensus 110 n~l~-~~~~~~~~~l-~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 110 NYLS-NLSSSWFKPL-SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp SCCS-SCCHHHHTTC-TTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CcCC-cCCHhHhCCC-ccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 7776 55544 3334 56777777777766 3444 22223367777777776 34444455666677777777777776
Q ss_pred CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC
Q 044176 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG 251 (362)
Q Consensus 172 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 251 (362)
.+..+..+..+++|++|++++|.+....... +..+++|+.|++++|.+.+..+... ..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l-~~------------------- 244 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDTFHFSEL-ST------------------- 244 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTTCCCC------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCcccccccccc-cc-------------------
Confidence 6655666667777777777777664322221 2345677777777776664322110 00
Q ss_pred CccccccceeeeecCcchHhhhhcccccEEeccCcccCC----CcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcC
Q 044176 252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG----EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLE 327 (362)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 327 (362)
....+.++.++++++.+++ .+|..+..+++|+.|++++|+++...+..|..+++|+
T Consensus 245 --------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 245 --------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp ----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred --------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 0114557777888777765 3567788999999999999999944334468999999
Q ss_pred EEEccCCcccccCc
Q 044176 328 SLDLSSNKLHGRIP 341 (362)
Q Consensus 328 ~L~l~~n~~~~~~~ 341 (362)
+|++++|+++...|
T Consensus 305 ~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 305 KIWLHTNPWDCSCP 318 (353)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEeeCCCccCcCC
Confidence 99999999997554
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.4e-31 Score=246.87 Aligned_cols=360 Identities=17% Similarity=0.122 Sum_probs=230.6
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCccccccc-------CCcCCCcEEEccCCcCCCCCC----CCCC----CccE
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-------HPWKNITVLNLQNNTIQGTIL----VPPP----STRA 65 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-------~~~~~L~~L~l~~n~~~~~~~----~~~~----~L~~ 65 (362)
|++|++++.....++..+++|+.|++++|.+++... ..+++|++|++++|.+.+..+ ..++ +|++
T Consensus 10 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 89 (461)
T 1z7x_W 10 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89 (461)
T ss_dssp EESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred hhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE
Confidence 356777754445556667999999999999885432 356889999999998865221 2233 7999
Q ss_pred EEccCccccc----CCcccccCCCCCCEEEcccCcccccCCCCccc----ccccccEEEcccccccCcc----hhhhhcC
Q 044176 66 FLFSNNKLFG----QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGN----FSTQLTILHLNNNYLQGRI----PDAFANG 133 (362)
Q Consensus 66 L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~ 133 (362)
|++++|.+.. .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.++... +..+..
T Consensus 90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~- 168 (461)
T 1z7x_W 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA- 168 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-
T ss_pred EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh-
Confidence 9999998874 44778889999999999999887432332222 1246999999999887533 444444
Q ss_pred CCCccEEeccCCcccCCCchhhh-----cCCCCcEEEccCCCCCCC----cchhccCCCCCCeEEccCCcCCCcccccc-
Q 044176 134 SCDLRSLGLNSNKLRGSFPRYLA-----DCTGLEVVNVGNNMIGDT----FPSWLGSLPGLKILVLRSNRFYGPLCEVN- 203 (362)
Q Consensus 134 ~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~- 203 (362)
+++|++|++++|.+++..+..+. ..+.|+.|++++|.+++. ++..+..+++|++|++++|.+.+......
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 37899999999887754444443 256899999999888664 35566778889999998887765322111
Q ss_pred --ccccCCcccEEeccCCcccCCCc---hhHHhhhhhhhhccccCCCcccccC--Ccccc----ccceeeeecC--cc--
Q 044176 204 --IMLPFEALRIIDLSHNEFTGFLP---RWIFVSLETMKNVDEKGSDGLYMQG--EEDYY----QDSVTVTVKG--RD-- 268 (362)
Q Consensus 204 --~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~~~--~~-- 268 (362)
.+..+++|++|++++|.+.+... ...+..+++++.+++.++....... ..... .....+.... ..
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 11347788888888888774321 1124557778888887775321100 00000 0111111111 11
Q ss_pred -----hHhhhhcccccEEeccCcccCCCcchhhcC-----CCCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCC
Q 044176 269 -----LVLKRIITIFTTIDLSSNQFQGEIPQVLGD-----FKSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSN 334 (362)
Q Consensus 269 -----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n 334 (362)
......+++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 112223577888888888877654444432 5688888888888875 56777777888888888888
Q ss_pred cccccCchhhhh-h----HhhhccCCCccccC
Q 044176 335 KLHGRIPEQFVD-A----EICSSFARPDLYTN 361 (362)
Q Consensus 335 ~~~~~~~~~~~~-l----~~L~~l~~~~l~~n 361 (362)
++++.....+.. + ..|+.|.+.+++.+
T Consensus 409 ~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 409 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 877653333332 1 23556655555543
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.3e-28 Score=212.01 Aligned_cols=277 Identities=20% Similarity=0.238 Sum_probs=159.7
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccC--CcccccCCCCCCEEEcccCc
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQ--IPPSIYSLSSLEYISLSHNN 96 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~ 96 (362)
+.++++++.++.+|....+++++|++++|.+.... +..+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 46788888888887766677888888877766433 34466777777777766522 24555667777777777777
Q ss_pred ccccCCCCcccccccccEEEcccccccCcch-hhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC-C
Q 044176 97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIP-DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD-T 174 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~ 174 (362)
++ .+|..+..+ ++|++|++++|.+....+ ..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .
T Consensus 90 i~-~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 90 VI-TMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp EE-EEEEEEETC-TTCCEEECTTSEEESSTTTTTTTT-CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred cc-cChhhcCCC-CCCCEEECCCCcccccccchhhhh-ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 76 555555555 567777777776663322 23332 3667777777776665555666666667777766666644 3
Q ss_pred cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcc
Q 044176 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254 (362)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 254 (362)
.+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. +.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~----------------------- 220 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFP-YK----------------------- 220 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCSBCCSGG-GT-----------------------
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHH--hcCCCCCCEEECCCCccCccChhh-cc-----------------------
Confidence 4555666666666666666665433332 245556666666666655322211 00
Q ss_pred ccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCC-CCCcEEEccCCcCccCch--hhhhcCCCcCEEEc
Q 044176 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF-KSLIVLNLSHNGLTGSIP--VSFANMIVLESLDL 331 (362)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~l 331 (362)
.+++|+.|++++|++++..+..+..+ ++|+.|++++|.+...-. .....+...+.+.+
T Consensus 221 -------------------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~ 281 (306)
T 2z66_A 221 -------------------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281 (306)
T ss_dssp -------------------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBS
T ss_pred -------------------CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhc
Confidence 04456666666666665555555555 356666666666553211 11122223333344
Q ss_pred cCCcccccCchhhhh
Q 044176 332 SSNKLHGRIPEQFVD 346 (362)
Q Consensus 332 ~~n~~~~~~~~~~~~ 346 (362)
..+.+.-..|+.+.+
T Consensus 282 ~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 282 EVERMECATPSDKQG 296 (306)
T ss_dssp CGGGCBEEESGGGTT
T ss_pred cccccccCCchhhCC
Confidence 444444444544444
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.1e-26 Score=218.97 Aligned_cols=271 Identities=21% Similarity=0.260 Sum_probs=166.8
Q ss_pred CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc
Q 044176 20 SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG 99 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 99 (362)
+++.|+++++.++.++....++|+.|++++|.++.... .+++|++|++++|.++. +|. .+++|++|++++|.++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~- 114 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT- 114 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-
Confidence 45666666666666655444566666666666553322 45666666666666653 333 4566666666666665
Q ss_pred cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc
Q 044176 100 TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179 (362)
Q Consensus 100 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 179 (362)
.+|. ..++|+.|++++|.++ .+|.. .++|++|++++|.+++ +|. .+.+|+.|++++|.++. ++
T Consensus 115 ~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~--- 177 (622)
T 3g06_A 115 HLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP--- 177 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---
T ss_pred CCCC----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---
Confidence 4444 1245666666666655 34432 2556666666666553 222 23456666666666543 22
Q ss_pred cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccc
Q 044176 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDS 259 (362)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 259 (362)
..+++|+.|++++|.+.+... .+++|+.|++++|.+.. ++. .+++|+.+++.++....++
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~-l~~----~~~~L~~L~Ls~N~L~~lp--------- 237 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTSLP--------- 237 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCC---------
T ss_pred ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCcccc-cCC----CCCCCCEEEccCCccCcCC---------
Confidence 334566666666666554211 12456666666666552 221 1245555555554322111
Q ss_pred eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccccc
Q 044176 260 VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR 339 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 339 (362)
..+++|+.|++++|+++. +|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus 238 -------------~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 238 -------------VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred -------------CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 115789999999999984 444 5789999999999999 6788999999999999999999998
Q ss_pred CchhhhhhHhhh
Q 044176 340 IPEQFVDAEICS 351 (362)
Q Consensus 340 ~~~~~~~l~~L~ 351 (362)
.|..+..++...
T Consensus 300 ~~~~l~~L~~~~ 311 (622)
T 3g06_A 300 TLQALREITSAP 311 (622)
T ss_dssp HHHHHHHHHHST
T ss_pred CHHHHHhccccc
Confidence 888888776543
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.9e-30 Score=239.28 Aligned_cols=331 Identities=18% Similarity=0.180 Sum_probs=206.0
Q ss_pred ccCCCCcEEEcCCCccccccc----CCcC----CCcEEEccCCcCCC-------CCCCCCCCccEEEccCcccccCCccc
Q 044176 16 QRWKSLTYLDISNNFLTQIEQ----HPWK----NITVLNLQNNTIQG-------TILVPPPSTRAFLFSNNKLFGQIPPS 80 (362)
Q Consensus 16 ~~~~~L~~L~ls~~~i~~~~~----~~~~----~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~ 80 (362)
..+++|+.|++++|.+++... ..++ +|++|++++|.+.+ ..+..+++|++|++++|.+.+..+..
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 335888888888888776433 2333 68888888888773 23455788888888888876543333
Q ss_pred cc-----CCCCCCEEEcccCccccc----CCCCcccccccccEEEcccccccCcchhhhhc----CCCCccEEeccCCcc
Q 044176 81 IY-----SLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN----GSCDLRSLGLNSNKL 147 (362)
Q Consensus 81 ~~-----~l~~L~~L~L~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~ 147 (362)
+. ..++|++|++++|.+++. ++..+..+ ++|++|++++|.+....+..+.. ..++|++|++++|.+
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 32 245788888888887742 23333344 57888888888776443333332 234788888888877
Q ss_pred cCC----CchhhhcCCCCcEEEccCCCCCCCcc-----hhccCCCCCCeEEccCCcCCCcccc--ccccccCCcccEEec
Q 044176 148 RGS----FPRYLADCTGLEVVNVGNNMIGDTFP-----SWLGSLPGLKILVLRSNRFYGPLCE--VNIMLPFEALRIIDL 216 (362)
Q Consensus 148 ~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~~L~~L~l 216 (362)
++. ++..+..+++|+.|++++|.+.+... ..+..+++|++|++++|.+++.... ...+..+++|++|++
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 753 35566677888888888887754321 2223577888888888877643211 112345677888888
Q ss_pred cCCcccCCCchhHHhhh----hhhhhccccCCCccccc-----CCccccccceeeeecCc--ch----Hhhh----hccc
Q 044176 217 SHNEFTGFLPRWIFVSL----ETMKNVDEKGSDGLYMQ-----GEEDYYQDSVTVTVKGR--DL----VLKR----IITI 277 (362)
Q Consensus 217 ~~n~~~~~~~~~~~~~~----~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~----~~~~----~~~~ 277 (362)
++|.+.+..+..+...+ ++++.+++.++...... ...........+..... .. .+.. ..++
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 87777643333322221 46777777766532211 00000111111111111 11 1111 1469
Q ss_pred ccEEeccCcccCC----CcchhhcCCCCCcEEEccCCcCccCchhhhh-----cCCCcCEEEccCCcccccCchhhhhh
Q 044176 278 FTTIDLSSNQFQG----EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA-----NMIVLESLDLSSNKLHGRIPEQFVDA 347 (362)
Q Consensus 278 L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~l 347 (362)
|+.|++++|.+++ .++..+..+++|++|++++|.+++.....+. ....|+.|++.++.+....++.+..+
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l 450 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 450 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHH
Confidence 9999999999986 5677888899999999999999865444332 23479999999988876555554443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=213.12 Aligned_cols=274 Identities=14% Similarity=0.146 Sum_probs=215.9
Q ss_pred CcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEc
Q 044176 38 PWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL 117 (362)
Q Consensus 38 ~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l 117 (362)
.|+.....+.+++.++.....-.++|++|++++|.+....+..|.++++|++|++++|.+++..+..+..+ ++|++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L 107 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL-GSLEHLDL 107 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEC
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC-CCCCEEEC
Confidence 45666678888888887665557899999999999998777789999999999999999995445667666 79999999
Q ss_pred ccccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhcCCCCcEEEccCC-CCCCCcchhccCCCCCCeEEccCCcC
Q 044176 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLADCTGLEVVNVGNN-MIGDTFPSWLGSLPGLKILVLRSNRF 195 (362)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~ 195 (362)
++|.++ .+|......+++|++|++++|.++...+ ..+..+++|+.|++++| .+.+..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999998 4555533345899999999999985444 47889999999999998 46555567788999999999999998
Q ss_pred CCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176 196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (362)
.+..+.. +..+++|++|++++|.+. ..+...+. .+
T Consensus 187 ~~~~~~~--l~~l~~L~~L~l~~n~l~-~~~~~~~~------------------------------------------~~ 221 (353)
T 2z80_A 187 QSYEPKS--LKSIQNVSHLILHMKQHI-LLLEIFVD------------------------------------------VT 221 (353)
T ss_dssp CEECTTT--TTTCSEEEEEEEECSCST-THHHHHHH------------------------------------------HT
T ss_pred CccCHHH--HhccccCCeecCCCCccc-cchhhhhh------------------------------------------hc
Confidence 8754544 377899999999999875 33332221 15
Q ss_pred ccccEEeccCcccCCCcchhh---cCCCCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCCcccccCchh-hhhh
Q 044176 276 TIFTTIDLSSNQFQGEIPQVL---GDFKSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSNKLHGRIPEQ-FVDA 347 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l 347 (362)
++|+.|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. |..+
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence 678999999999987654433 346778999999998875 46778999999999999999999 55654 5788
Q ss_pred HhhhccCCCccccCC
Q 044176 348 EICSSFARPDLYTNA 362 (362)
Q Consensus 348 ~~L~~l~~~~l~~n~ 362 (362)
++|++| ++++|+
T Consensus 301 ~~L~~L---~L~~N~ 312 (353)
T 2z80_A 301 TSLQKI---WLHTNP 312 (353)
T ss_dssp TTCCEE---ECCSSC
T ss_pred CCCCEE---EeeCCC
Confidence 777777 777764
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=9.9e-27 Score=212.90 Aligned_cols=306 Identities=24% Similarity=0.295 Sum_probs=200.8
Q ss_pred CCCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcc
Q 044176 1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPP 79 (362)
Q Consensus 1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~ 79 (362)
|++|++++ +|.. +++|+.|++++|+++.++.. .++|++|++++|.+++.. +..+++|++|++++|.+.+ +|.
T Consensus 98 l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l~~~-~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~ 170 (454)
T 1jl5_A 98 ASCNSLTE-LPEL----PQSLKSLLVDNNNLKALSDL-PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPD 170 (454)
T ss_dssp CCSSCCSS-CCCC----CTTCCEEECCSSCCSCCCSC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCC
T ss_pred ccCCcCCc-cccc----cCCCcEEECCCCccCcccCC-CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCC
Confidence 56788884 7653 37899999999999887653 368999999999888632 4458899999999998885 454
Q ss_pred cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC
Q 044176 80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT 159 (362)
Q Consensus 80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 159 (362)
. ..+|++|++++|+++ .+| .+..+ ++|++|++++|.+.+ +|.. .++|++|++++|.++ .+| .++.++
T Consensus 171 ~---~~~L~~L~L~~n~l~-~l~-~~~~l-~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~ 237 (454)
T 1jl5_A 171 L---PPSLEFIAAGNNQLE-ELP-ELQNL-PFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLP 237 (454)
T ss_dssp C---CTTCCEEECCSSCCS-SCC-CCTTC-TTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred C---cccccEEECcCCcCC-cCc-cccCC-CCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCC
Confidence 3 358999999999998 566 56666 789999999998873 4543 257899999999888 556 488899
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhc
Q 044176 160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239 (362)
Q Consensus 160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 239 (362)
+|+.|++++|.+.+ .|. .+++|++|++++|.+.+. +. .+++|++|++++|.+.+. +. ..++++.+
T Consensus 238 ~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~-----~~~~L~~L~ls~N~l~~l-~~----~~~~L~~L 302 (454)
T 1jl5_A 238 FLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE-----LPQSLTFLDVSENIFSGL-SE----LPPNLYYL 302 (454)
T ss_dssp TCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSEE-SC----CCTTCCEE
T ss_pred CCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Cc-----ccCcCCEEECcCCccCcc-cC----cCCcCCEE
Confidence 99999999998864 333 247888999998888762 22 136788888888887752 11 11466677
Q ss_pred cccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc--Cch
Q 044176 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG--SIP 317 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~ 317 (362)
++.++....+...... ...+........ .++..+++|+.|++++|++++ +|. .+++|+.|++++|++++ .+|
T Consensus 303 ~l~~N~l~~i~~~~~~-L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 303 NASSNEIRSLCDLPPS-LEELNVSNNKLI-ELPALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp ECCSSCCSEECCCCTT-CCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred ECcCCcCCcccCCcCc-CCEEECCCCccc-cccccCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCCh
Confidence 7766654433221100 011111111111 122336889999999999984 554 47899999999999997 678
Q ss_pred hhhhcC-------------CCcCEEEccCCcccc--cCchhhhhh
Q 044176 318 VSFANM-------------IVLESLDLSSNKLHG--RIPEQFVDA 347 (362)
Q Consensus 318 ~~~~~~-------------~~L~~L~l~~n~~~~--~~~~~~~~l 347 (362)
.++..+ ++|++|++++|++++ .+|.++..+
T Consensus 377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp TTCCEEECCC-----------------------------------
T ss_pred HHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 888877 899999999999997 667655443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=208.83 Aligned_cols=250 Identities=20% Similarity=0.202 Sum_probs=206.6
Q ss_pred CcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc--cCCCCcccccccccEEEccc
Q 044176 42 ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG--TIPPCLGNFSTQLTILHLNN 119 (362)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~l~~ 119 (362)
-+.++.+++.++.......+++++|++++|.+....+..|.++++|++|++++|.++. ..+..+..+ ++|++|++++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~ 87 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSF 87 (306)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCS
T ss_pred CCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCC
Confidence 3577888888776665557899999999999996666668999999999999999872 124455555 7899999999
Q ss_pred ccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCC-
Q 044176 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG- 197 (362)
Q Consensus 120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~- 197 (362)
|.+. .+|..+... ++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 88 n~i~-~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 88 NGVI-TMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSEE-EEEEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred Cccc-cChhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 9987 577766654 899999999999986544 578899999999999999987788888999999999999998875
Q ss_pred ccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccc
Q 044176 198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (362)
..+.. +..+++|++|++++|.+.+..+..+ . .+++
T Consensus 166 ~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~-~------------------------------------------~l~~ 200 (306)
T 2z66_A 166 FLPDI--FTELRNLTFLDLSQCQLEQLSPTAF-N------------------------------------------SLSS 200 (306)
T ss_dssp EECSC--CTTCTTCCEEECTTSCCCEECTTTT-T------------------------------------------TCTT
T ss_pred cchhH--HhhCcCCCEEECCCCCcCCcCHHHh-c------------------------------------------CCCC
Confidence 23333 4778999999999999875444321 1 1678
Q ss_pred ccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCC-CcCEEEccCCccccc
Q 044176 278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-VLESLDLSSNKLHGR 339 (362)
Q Consensus 278 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~~~~~ 339 (362)
|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|+++..
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99999999999987777889999999999999999988888999985 999999999999864
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.3e-27 Score=207.30 Aligned_cols=225 Identities=19% Similarity=0.202 Sum_probs=148.4
Q ss_pred CCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEE
Q 044176 61 PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSL 140 (362)
Q Consensus 61 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 140 (362)
++++.|++++|.+. .+|..+.++++|++|++++|.++ .+|..+..+ ++|++|++++|.+. .+|..+... ++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l~~l-~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASL-NRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGGGGC-TTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHHhcC-cCCCEE
Confidence 55666666666666 55666666777777777777776 677666666 56777777777776 566666554 677777
Q ss_pred eccCCcccCCCchhhh---------cCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcc
Q 044176 141 GLNSNKLRGSFPRYLA---------DCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEAL 211 (362)
Q Consensus 141 ~l~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L 211 (362)
++++|.+.+.+|..+. .+++|+.|++++|.++ .+|..++.+++|++|++++|.+.+..+ .+..+++|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L 231 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKL 231 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG---GGGGCTTC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch---hhccCCCC
Confidence 7777666555555544 3677777777777765 455666677777777777777665332 23556677
Q ss_pred cEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCC
Q 044176 212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE 291 (362)
Q Consensus 212 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 291 (362)
++|++++|.+.+..|..+ . .+++|+.|++++|.+.+.
T Consensus 232 ~~L~Ls~n~~~~~~p~~~-~------------------------------------------~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIF-G------------------------------------------GRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp CEEECTTCTTCCBCCCCT-T------------------------------------------CCCCCCEEECTTCTTCCB
T ss_pred CEEECcCCcchhhhHHHh-c------------------------------------------CCCCCCEEECCCCCchhh
Confidence 777777766655444321 0 145677777777776666
Q ss_pred cchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176 292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 337 (362)
+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7766777777777777777777777777777777777777665544
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.4e-27 Score=202.22 Aligned_cols=270 Identities=17% Similarity=0.142 Sum_probs=156.0
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI 101 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 101 (362)
+.++++++.++.++....++++.|++++|. +....+..|.++++|++|++++|.+++..
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~---------------------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 72 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNR---------------------ISHVPAASFRACRNLTILWLHSNVLARID 72 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSC---------------------CCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCc---------------------CCccCHHHcccCCCCCEEECCCCccceeC
Confidence 455666666666555444455555555554 44444445566666666666666665333
Q ss_pred CCCcccccccccEEEccccc-ccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhcc
Q 044176 102 PPCLGNFSTQLTILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180 (362)
Q Consensus 102 ~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 180 (362)
+..+..+ ++|++|++++|. +....|..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..++
T Consensus 73 ~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 150 (285)
T 1ozn_A 73 AAAFTGL-ALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150 (285)
T ss_dssp TTTTTTC-TTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HhhcCCc-cCCCEEeCCCCCCccccCHHHhcC-CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence 4444444 456666666665 44322344433 35666666666666655555666666777777777666555555566
Q ss_pred CCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccce
Q 044176 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSV 260 (362)
Q Consensus 181 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 260 (362)
.+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+..+ .
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~-~----------------------------- 198 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAF-R----------------------------- 198 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTT-T-----------------------------
T ss_pred cCCCccEEECCCCcccccCHHH--hcCccccCEEECCCCcccccCHhHc-c-----------------------------
Confidence 6677777777776665433322 3556677777777776654333221 1
Q ss_pred eeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccC
Q 044176 261 TVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRI 340 (362)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 340 (362)
.+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+. ......++.+..+.+.+....
T Consensus 199 -------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 199 -------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp -------------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEE
T ss_pred -------------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCC
Confidence 145677778888877766666677778888888888877632221 111123444446666666667
Q ss_pred chhhhhhHhhhccCCCccccC
Q 044176 341 PEQFVDAEICSSFARPDLYTN 361 (362)
Q Consensus 341 ~~~~~~l~~L~~l~~~~l~~n 361 (362)
|+.+.+. .+..+...+++|-
T Consensus 265 p~~l~g~-~l~~l~~~~l~~C 284 (285)
T 1ozn_A 265 PQRLAGR-DLKRLAANDLQGC 284 (285)
T ss_dssp SGGGTTC-BGGGSCGGGSCCC
T ss_pred chHhCCc-ChhhcCHHHhccC
Confidence 7766553 3455555565553
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5e-27 Score=206.12 Aligned_cols=221 Identities=19% Similarity=0.236 Sum_probs=193.3
Q ss_pred CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcE
Q 044176 84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV 163 (362)
Q Consensus 84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (362)
..++++|++++|.++ .+|..++.+ ++|++|++++|.+. .+|..+... ++|++|++++|.++ .+|..+..+++|+.
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 578999999999999 899999987 79999999999998 888888765 89999999999998 77889999999999
Q ss_pred EEccCCCCCCCcchhccC---------CCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhh
Q 044176 164 VNVGNNMIGDTFPSWLGS---------LPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE 234 (362)
Q Consensus 164 L~l~~~~~~~~~~~~~~~---------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 234 (362)
|++++|...+..|..+.. +++|++|++++|.+.. .+.. +..+++|++|++++|.+.+ .+.. +.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~--l~~l~~L~~L~L~~N~l~~-l~~~-l~--- 226 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPAS--IANLQNLKSLKIRNSPLSA-LGPA-IH--- 226 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGG--GGGCTTCCEEEEESSCCCC-CCGG-GG---
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHh--hcCCCCCCEEEccCCCCCc-Cchh-hc---
Confidence 999998877777776554 8999999999998874 3433 4778899999999999884 3322 11
Q ss_pred hhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314 (362)
Q Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 314 (362)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus 227 ---------------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 227 ---------------------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp ---------------------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred ---------------------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 16789999999999998999999999999999999999998
Q ss_pred CchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCC
Q 044176 315 SIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARP 356 (362)
Q Consensus 315 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~ 356 (362)
.+|..+..+++|++|++++|++.+.+|+.+..++.++.+.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 999999999999999999999999999999999998888554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.6e-26 Score=212.22 Aligned_cols=248 Identities=20% Similarity=0.198 Sum_probs=184.2
Q ss_pred CcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccccc
Q 044176 42 ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNY 121 (362)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 121 (362)
.+.++.++..++.....-.++++.|++++|.+....+..|.++++|++|++++|.+++..+..+..+ ++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-ASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc-ccCCEEECCCCc
Confidence 4556666666555443335677788888888877777788888888888888888874444555555 688888888888
Q ss_pred ccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCC-CCCCcchhccCCCCCCeEEccCCcCCCccc
Q 044176 122 LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNRFYGPLC 200 (362)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 200 (362)
+. .+|......+++|++|++++|.++...+..+..+++|+.|++++|. +....+..+..+++|++|++++|.+.+..
T Consensus 135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 87 4444433345788888888888886556678888888888888854 43333446778888999999988887632
Q ss_pred cccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccE
Q 044176 201 EVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTT 280 (362)
Q Consensus 201 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 280 (362)
.+..+++|++|++++|.+.+..+.. +. .+++|+.
T Consensus 213 ---~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~~ 246 (452)
T 3zyi_A 213 ---NLTPLVGLEELEMSGNHFPEIRPGS-FH------------------------------------------GLSSLKK 246 (452)
T ss_dssp ---CCTTCTTCCEEECTTSCCSEECGGG-GT------------------------------------------TCTTCCE
T ss_pred ---cccccccccEEECcCCcCcccCccc-cc------------------------------------------CccCCCE
Confidence 2467788999999998887544433 11 1567888
Q ss_pred EeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 281 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.-
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9999998887778888888999999999999987767778888999999999988653
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.4e-26 Score=210.35 Aligned_cols=246 Identities=20% Similarity=0.195 Sum_probs=148.7
Q ss_pred cEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccc
Q 044176 43 TVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYL 122 (362)
Q Consensus 43 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 122 (362)
+.++..+..++.....-.++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+ ++|++|++++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC-SSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC-ccCCEEECCCCcC
Confidence 344444444443333334455555555555555555566666666666666666662222333333 5666666666666
Q ss_pred cCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCC-CCCCcchhccCCCCCCeEEccCCcCCCcccc
Q 044176 123 QGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNRFYGPLCE 201 (362)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 201 (362)
+ .++......+++|++|++++|.++...+..+..+++|+.|++++|. +....+..+..+++|++|++++|.+....
T Consensus 125 ~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp S-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred C-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 5 3333222233666666666666665445566667777777776643 32223335666777777777777666422
Q ss_pred ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEE
Q 044176 202 VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTI 281 (362)
Q Consensus 202 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 281 (362)
.+..+++|++|++++|.+.+..+.. +. .+++|+.|
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~~L 236 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSAIRPGS-FQ------------------------------------------GLMHLQKL 236 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCEECTTT-TT------------------------------------------TCTTCCEE
T ss_pred --ccCCCcccCEEECCCCccCccChhh-hc------------------------------------------cCccCCEE
Confidence 2356677777777777776433322 11 15567777
Q ss_pred eccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176 282 DLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337 (362)
Q Consensus 282 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 337 (362)
++++|.+++..+..+..+++|+.|+|++|+++...+..+..+++|+.|++++|++.
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777777666777777777888888888777666666777778888888877754
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.9e-25 Score=209.35 Aligned_cols=256 Identities=22% Similarity=0.263 Sum_probs=203.9
Q ss_pred CCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc
Q 044176 40 KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119 (362)
Q Consensus 40 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~ 119 (362)
.+++.|++++|.++.......++|+.|++++|.++. +|. .+++|++|++++|+++ .+|. .+ ++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l-~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LP-PGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CC-TTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CC-CCCCEEECcC
Confidence 368999999999986554446899999999999984 554 5799999999999998 7777 33 7899999999
Q ss_pred ccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc
Q 044176 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL 199 (362)
Q Consensus 120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 199 (362)
|.+. .+|. ..++|++|++++|.++. +|.. +++|+.|++++|.+++. +. .+++|+.|++++|.++...
T Consensus 111 N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 111 NPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC
T ss_pred CcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc
Confidence 9998 4555 34789999999999984 4443 48999999999998653 32 4578999999999988633
Q ss_pred ccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccccc
Q 044176 200 CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT 279 (362)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 279 (362)
..+++|+.|++++|.+.+ ++. ..++++.+++.++....+.. .+++|+
T Consensus 178 ------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l~~----------------------~~~~L~ 224 (622)
T 3g06_A 178 ------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSLPA----------------------LPSGLK 224 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCCC----------------------CCTTCC
T ss_pred ------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccccCC----------------------CCCCCC
Confidence 346899999999999985 332 24677888877765332221 147899
Q ss_pred EEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccc
Q 044176 280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLY 359 (362)
Q Consensus 280 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~ 359 (362)
.|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.| +++
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L---~L~ 292 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV---NLE 292 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE---ECC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE---Eec
Confidence 99999999985 44 46689999999999999 4555 6789999999999999 678888888877777 777
Q ss_pred cCC
Q 044176 360 TNA 362 (362)
Q Consensus 360 ~n~ 362 (362)
+|+
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-26 Score=199.17 Aligned_cols=215 Identities=20% Similarity=0.247 Sum_probs=155.3
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcc-cc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNK-LF 74 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~-~~ 74 (362)
+++.++ .+|.... ++++.|++++|.++.+++ ..+++|+.|++++|.+++. .+..+++|++|++++|. +.
T Consensus 19 ~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 19 PQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred CcCCcc-cCCcCCC---CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 456777 7787543 789999999999999886 4567889999988887754 34457788888888886 66
Q ss_pred cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176 75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154 (362)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 154 (362)
...+..|..+++|++|++++|.+++..+..+..+ ++|++|++++|.+....+..+.. +++|++|++++|.+++..+..
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC-cCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCcccccCHHH
Confidence 6667778888888888888888874334455555 67888888888777433333443 477888888888777555556
Q ss_pred hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCC
Q 044176 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF 224 (362)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 224 (362)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+...
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEECS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCccCC
Confidence 777788888888888777666777777778888888877776643332 35677777777777776643
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.8e-26 Score=209.71 Aligned_cols=246 Identities=19% Similarity=0.215 Sum_probs=191.0
Q ss_pred ccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEec
Q 044176 63 TRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL 142 (362)
Q Consensus 63 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 142 (362)
.+.++.++..+. .+|..+ .+++++|++++|.+++..+..+..+ ++|++|++++|.+....+..+.. +++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNG-LASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTT-CTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccC-cccCCEEEC
Confidence 457777777776 455544 3688888888888885445666666 68888888888887555555554 478888888
Q ss_pred cCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+. ..+..+++|++|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccc
Confidence 88888866666788888888888888888766666788888888888888544432222 23467788888888888876
Q ss_pred CCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCC
Q 044176 223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSL 302 (362)
Q Consensus 223 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 302 (362)
+. +. + ..+++|+.|++++|.+++..+..+..+++|
T Consensus 210 ~~-~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 210 DM-PN--L------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp SC-CC--C------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred cc-cc--c------------------------------------------cccccccEEECcCCcCcccCcccccCccCC
Confidence 32 21 0 116789999999999998889999999999
Q ss_pred cEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 303 IVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 303 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+.|++++|++++..+..|..+++|++|++++|++++..++.|..+++|+.| ++++|.
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL---HLHHNP 301 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE---ECCSSC
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE---EccCCC
Confidence 999999999998888999999999999999999997777778888777777 777763
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=208.90 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=193.8
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
..+.++.++..+. .+|..+. ++++.|++++|+++...+..+..+ ++|++|++++|.+....+..+.. +++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNG-LANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTT-CSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccC-CccCCEEE
Confidence 3467788887777 4565553 688899999998884444566665 78999999999887554555554 48899999
Q ss_pred ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221 (362)
Q Consensus 142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 221 (362)
+++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+. ..+..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcC
Confidence 999988866666788889999999999988766666788888999999988654433222 2347788889999988887
Q ss_pred cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCC
Q 044176 222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKS 301 (362)
Q Consensus 222 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 301 (362)
.. ++. + ..+++|+.|++++|++++..+..+..+++
T Consensus 198 ~~-~~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 198 RE-IPN--L------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp SS-CCC--C------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cc-ccc--c------------------------------------------CCCcccCEEECCCCccCccChhhhccCcc
Confidence 62 221 0 11678999999999999888899999999
Q ss_pred CcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 302 LIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 302 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
|+.|++++|++++..+..|..+++|++|++++|+++...++.|..+++|+.| ++++|.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI---HLHHNP 290 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE---ECCSSC
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE---EcCCCC
Confidence 9999999999998888899999999999999999997777778888777777 677763
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2e-27 Score=207.47 Aligned_cols=249 Identities=22% Similarity=0.228 Sum_probs=171.0
Q ss_pred cCCCcEEEccCCcCCCCCCCC-CCCccEEEccCcccc-cCCccccc-------CCCCCCEEEcccCcccccCCCCc--cc
Q 044176 39 WKNITVLNLQNNTIQGTILVP-PPSTRAFLFSNNKLF-GQIPPSIY-------SLSSLEYISLSHNNLSGTIPPCL--GN 107 (362)
Q Consensus 39 ~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~l--~~ 107 (362)
.++|+.+++++|.+ ..+.. ...|++|++++|.+. ..++..+. ++++|++|++++|.+++.+|..+ ..
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 45788888888887 22222 333788888888873 34555554 68888888888888887777765 44
Q ss_pred ccccccEEEcccccccCcchhhhhcC----CCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC--cchhc--
Q 044176 108 FSTQLTILHLNNNYLQGRIPDAFANG----SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT--FPSWL-- 179 (362)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~-- 179 (362)
+ ++|++|++++|.+.+. |..+... .++|++|++++|.+++..+..++.+++|+.|++++|++.+. .+..+
T Consensus 120 l-~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 G-PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp S-CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred C-CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 4 6888888888888754 6555442 26788888888888766667788888888888888876543 22333
Q ss_pred cCCCCCCeEEccCCcCCCccccc-cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcccccc
Q 044176 180 GSLPGLKILVLRSNRFYGPLCEV-NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258 (362)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 258 (362)
..+++|++|++++|.+.+..... ..+..+++|++|++++|.+.+..+...+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------- 250 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD--------------------------- 250 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC---------------------------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh---------------------------
Confidence 67788888888888776422111 12245677888888888777544211110
Q ss_pred ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
.+++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ---------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 ---------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ---------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ---------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 1466888888888887 5555554 7888888888888854 55 7888888888888888875
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.6e-27 Score=203.62 Aligned_cols=254 Identities=20% Similarity=0.221 Sum_probs=192.9
Q ss_pred CcEEEccCCcCCC---CCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176 42 ITVLNLQNNTIQG---TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118 (362)
Q Consensus 42 L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~ 118 (362)
++..+++.+.+.. ..+..+++|++|++++|.+....|..|.++++|++|++++|.+++ .+. +..+ ++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l-~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESL-STLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTC-TTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhc-CCCCEEECc
Confidence 3444555544432 223346789999999999998877889999999999999999984 333 5555 689999999
Q ss_pred cccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCc
Q 044176 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP 198 (362)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 198 (362)
+|.+. .++. . ++|++|++++|.+++..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 89 ~n~l~-~l~~----~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQ-ELLV----G-PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEE-EEEE----C-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCccc-cccC----C-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99887 3332 2 7899999999988754333 367789999999988777677788888899999998888764
Q ss_pred cccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176 199 LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF 278 (362)
Q Consensus 199 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 278 (362)
.+... ...+++|++|++++|.+.+..... .+++|
T Consensus 160 ~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------------------~l~~L 193 (317)
T 3o53_A 160 NFAEL-AASSDTLEHLNLQYNFIYDVKGQV---------------------------------------------VFAKL 193 (317)
T ss_dssp EGGGG-GGGTTTCCEEECTTSCCCEEECCC---------------------------------------------CCTTC
T ss_pred cHHHH-hhccCcCCEEECCCCcCccccccc---------------------------------------------ccccC
Confidence 44332 135688899999888876321110 15779
Q ss_pred cEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc-ccCchhhhhhHhhhccCC
Q 044176 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH-GRIPEQFVDAEICSSFAR 355 (362)
Q Consensus 279 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l~~ 355 (362)
+.|++++|++++ ++..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++
T Consensus 194 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred CEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 999999999985 4445888999999999999998 57888999999999999999998 677788888888877643
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.5e-27 Score=206.90 Aligned_cols=249 Identities=22% Similarity=0.224 Sum_probs=180.3
Q ss_pred CCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc-ccCCCCcc-------cccccccEEEcccccccCcchhhhh
Q 044176 60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS-GTIPPCLG-------NFSTQLTILHLNNNYLQGRIPDAFA 131 (362)
Q Consensus 60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~l~-------~~~~~L~~L~l~~~~~~~~~~~~~~ 131 (362)
.++|+.+++++|.+ .+|..+... |++|++++|.+. ..+|..+. .+ ++|++|++++|.+.+..|..++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHH
Confidence 45678888888888 566655544 888888888884 23554443 34 6889999999988877777652
Q ss_pred -cCCCCccEEeccCCcccCCCchhhhcC-----CCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc--cccc
Q 044176 132 -NGSCDLRSLGLNSNKLRGSFPRYLADC-----TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL--CEVN 203 (362)
Q Consensus 132 -~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~ 203 (362)
..+++|++|++++|.+++. |..+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+.. +...
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 4457899999999988865 7777766 88999999999887777788888889999999988876532 2223
Q ss_pred ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEec
Q 044176 204 IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL 283 (362)
Q Consensus 204 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 283 (362)
.+..+++|++|++++|.+.+. +.... .....+++|+.|++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~-~~~~~---------------------------------------~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETP-SGVCS---------------------------------------ALAAARVQLQGLDL 235 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCH-HHHHH---------------------------------------HHHHTTCCCSEEEC
T ss_pred HhccCCCCCEEECCCCcCcch-HHHHH---------------------------------------HHHhcCCCCCEEEC
Confidence 346788899999998887631 11100 00111567888999
Q ss_pred cCcccCCCcc-hhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 284 SSNQFQGEIP-QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 284 ~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
++|.+++..| ..+..+++|+.|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++| ++++|+
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L---~L~~N~ 307 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNL---SLKGNP 307 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEE---ECTTCT
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEE---eccCCC
Confidence 9998887654 44566788999999999888 6666665 7889999999998864 65 7777777666 666664
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.2e-27 Score=203.75 Aligned_cols=262 Identities=22% Similarity=0.211 Sum_probs=202.7
Q ss_pred CCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176 20 SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS 93 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 93 (362)
+++..+++.+.+..... ..+++|++|++++|.+.+.. +..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666655444 34567888888888877644 3457888888888888875543 8889999999999
Q ss_pred cCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176 94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173 (362)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (362)
+|.++ .++ .. ++|++|++++|.+.+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 89 ~n~l~-~l~----~~-~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQ-ELL----VG-PSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEE-EEE----EC-TTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred CCccc-ccc----CC-CCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 99998 443 22 68999999999987443332 3789999999999997767788899999999999999987
Q ss_pred Ccchhc-cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCC
Q 044176 174 TFPSWL-GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252 (362)
Q Consensus 174 ~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 252 (362)
..+..+ ..+++|++|++++|.+++... ...+++|++|++++|.+.+..+ . +.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~-~-~~--------------------- 211 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAFMGP-E-FQ--------------------- 211 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCEECG-G-GG---------------------
T ss_pred ccHHHHhhccCcCCEEECCCCcCccccc----ccccccCCEEECCCCcCCcchh-h-hc---------------------
Confidence 766665 478999999999999876422 2347899999999999884322 2 11
Q ss_pred ccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEc
Q 044176 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDL 331 (362)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l 331 (362)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..++.|+.+++
T Consensus 212 ---------------------~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 212 ---------------------SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp ---------------------GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred ---------------------ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 1678999999999998 56777889999999999999998 778888999999999999
Q ss_pred cCC-cccccCch
Q 044176 332 SSN-KLHGRIPE 342 (362)
Q Consensus 332 ~~n-~~~~~~~~ 342 (362)
+++ .+++..|.
T Consensus 270 ~~~~~l~~~~~~ 281 (317)
T 3o53_A 270 QTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHSSSSC
T ss_pred CCchhccCCchh
Confidence 954 45554443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.1e-26 Score=210.12 Aligned_cols=232 Identities=22% Similarity=0.226 Sum_probs=121.6
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
+|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+ ++|++|++++|.+. .+|.. ++|++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~-~l~~~-----~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQ-ELLVG-----PSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEE-EEEEC-----TTCCEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCC-CCCCC-----CCcCEEE
Confidence 44555555555554444555555555555555555552222 3333 45555555555554 22211 4555555
Q ss_pred ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221 (362)
Q Consensus 142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 221 (362)
+++|.+++..+. .++.|+.|++++|.+++..+..++.+++|++|++++|.+.+..+..+ ...+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence 555555533222 23455555555555555445455555555555555555554333221 12345566666665555
Q ss_pred cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCC
Q 044176 222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKS 301 (362)
Q Consensus 222 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 301 (362)
.+..+.. .+++|+.|++++|.+++..+ .+..+++
T Consensus 182 ~~~~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~ 215 (487)
T 3oja_A 182 YDVKGQV---------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAG 215 (487)
T ss_dssp CEEECCC---------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred ccccccc---------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCC
Confidence 4221100 04556666666666664333 3566666
Q ss_pred CcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc-ccCchhhhhhHhhhcc
Q 044176 302 LIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH-GRIPEQFVDAEICSSF 353 (362)
Q Consensus 302 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l 353 (362)
|+.|++++|.+++ +|..+..+++|+.|++++|+++ +.+|..+..++.++.+
T Consensus 216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 6666666666663 5555666666666666666666 4455555555555544
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-24 Score=200.07 Aligned_cols=233 Identities=22% Similarity=0.211 Sum_probs=181.7
Q ss_pred cCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEE
Q 044176 39 WKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTIL 115 (362)
Q Consensus 39 ~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 115 (362)
+++|+.|++++|.+.+.. +..+++|++|++++|.+.+..| +..+++|++|++++|.++ .++. . ++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~----~-~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV----G-PSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE----C-TTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC----C-CCcCEE
Confidence 446777777777776543 3447788888888888875544 888999999999999887 4432 2 689999
Q ss_pred EcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhcc-CCCCCCeEEccCCc
Q 044176 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG-SLPGLKILVLRSNR 194 (362)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~ 194 (362)
++++|.+.+..+. .+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+..+. .+++|++|++++|.
T Consensus 105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999998754333 237899999999999877777888899999999999999877777765 78999999999998
Q ss_pred CCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhh
Q 044176 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (362)
+.+... ...+++|+.|++++|.+.+..+. +. .
T Consensus 181 l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~--~~------------------------------------------~ 212 (487)
T 3oja_A 181 IYDVKG----QVVFAKLKTLDLSSNKLAFMGPE--FQ------------------------------------------S 212 (487)
T ss_dssp CCEEEC----CCCCTTCCEEECCSSCCCEECGG--GG------------------------------------------G
T ss_pred cccccc----cccCCCCCEEECCCCCCCCCCHh--Hc------------------------------------------C
Confidence 876422 23578999999999998853332 11 1
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEcc
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDLS 332 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~ 332 (362)
+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|+.++++
T Consensus 213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6778999999999984 6777888899999999999987 6677788888888888885
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.7e-23 Score=175.32 Aligned_cols=211 Identities=21% Similarity=0.182 Sum_probs=115.9
Q ss_pred CCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEE
Q 044176 86 SLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN 165 (362)
Q Consensus 86 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (362)
++++|++++|.+++..+..+..+ ++|++|++++|.+....+..+.. +++|++|++++|.+++..+..+..+++|+.|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccC-CcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 34444444444442112233333 34455555444444222223322 24555555555555544444555556666666
Q ss_pred ccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc-ccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCC
Q 044176 166 VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL-CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGS 244 (362)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~ 244 (362)
+++|.+.+..+..++.+++|++|++++|.+.+.. +.. +..+++|++|++++|.+.+..+.. +..+..+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~--~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L-------- 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM-------- 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECCSSCCCEECGGG-GHHHHTC--------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchh--hccCCCCCEEECCCCCCCcCCHHH-hhhhhhc--------
Confidence 6666554444444556666666666666655421 222 355666777777777666332222 2222221
Q ss_pred CcccccCCccccccceeeeecCcchHhhhhccccc-EEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcC
Q 044176 245 DGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT-TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANM 323 (362)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 323 (362)
+.+. .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+
T Consensus 176 -------------------------------~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 176 -------------------------------PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp -------------------------------TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred -------------------------------cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence 1222 678888888755444443 3478888888888886655667888
Q ss_pred CCcCEEEccCCcccccCc
Q 044176 324 IVLESLDLSSNKLHGRIP 341 (362)
Q Consensus 324 ~~L~~L~l~~n~~~~~~~ 341 (362)
++|++|++++|+++...+
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 888888888888886554
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.1e-22 Score=172.02 Aligned_cols=202 Identities=23% Similarity=0.239 Sum_probs=115.8
Q ss_pred CCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEc
Q 044176 87 LEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV 166 (362)
Q Consensus 87 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 166 (362)
.++++++++.++ .+|..+. +++++|++++|.+....+..+.. +++|++|++++|.++...+..|..+++|+.|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSS-CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcC-CCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 455556555555 4554332 34556666666555322223333 356666666666655443444555666666666
Q ss_pred cCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCc
Q 044176 167 GNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG 246 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~ 246 (362)
++|.+.+..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. +.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~--------------- 154 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGV-FD--------------- 154 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTT-TT---------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHH--hCcCcCCCEEECCCCcCCccCHhH-cc---------------
Confidence 666665544455556666666666666655533332 245566666666666665322211 11
Q ss_pred ccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCc
Q 044176 247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVL 326 (362)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 326 (362)
.+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 155 ---------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 155 ---------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ---------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 14556677777777765555556667777777777777775555556777777
Q ss_pred CEEEccCCcccc
Q 044176 327 ESLDLSSNKLHG 338 (362)
Q Consensus 327 ~~L~l~~n~~~~ 338 (362)
+.|++++|++.-
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 777777777654
No 71
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6.1e-24 Score=189.33 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=141.2
Q ss_pred CccEEEccCcccccCCc----ccccCCC-CCCEEEcccCcccccCCCCcccc----cccccEEEcccccccCcchhhhhc
Q 044176 62 STRAFLFSNNKLFGQIP----PSIYSLS-SLEYISLSHNNLSGTIPPCLGNF----STQLTILHLNNNYLQGRIPDAFAN 132 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~ 132 (362)
+|++|++++|.+.+..+ ..+.+++ +|++|++++|.+++..+..+... .++|++|++++|.+.+..+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 35555555555554444 5555666 67777777776664333333332 146677777777666444443332
Q ss_pred C---C-CCccEEeccCCcccCCCchhhhc-----CCCCcEEEccCCCCCCCcc----hhccCCC-CCCeEEccCCcCCCc
Q 044176 133 G---S-CDLRSLGLNSNKLRGSFPRYLAD-----CTGLEVVNVGNNMIGDTFP----SWLGSLP-GLKILVLRSNRFYGP 198 (362)
Q Consensus 133 ~---~-~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~ 198 (362)
. . ++|++|++++|.+++..+..+.. .+.|+.|++++|.+++..+ ..+..++ +|++|++++|.+++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 2 1 46777777777766554444332 2477777777777654322 3334444 777777777776654
Q ss_pred ccccc--ccccC-CcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176 199 LCEVN--IMLPF-EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII 275 (362)
Q Consensus 199 ~~~~~--~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (362)
.+..+ .+..+ ++|++|++++|.+.+.....+...+. ...
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~--------------------------------------~~~ 224 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS--------------------------------------SIP 224 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--------------------------------------HSC
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh--------------------------------------cCC
Confidence 33222 22344 47777777777776432222211111 113
Q ss_pred ccccEEeccCcccCCCcc----hhhcCCCCCcEEEccCCcCccC-------chhhhhcCCCcCEEEccCCcccccCchh
Q 044176 276 TIFTTIDLSSNQFQGEIP----QVLGDFKSLIVLNLSHNGLTGS-------IPVSFANMIVLESLDLSSNKLHGRIPEQ 343 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 343 (362)
++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+..++.|+.||+++|++.+..+..
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 468888888888876544 2345667888888888874432 2335567778888888888887664433
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=4e-22 Score=170.20 Aligned_cols=203 Identities=22% Similarity=0.229 Sum_probs=170.1
Q ss_pred CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176 19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN 95 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 95 (362)
.+.+.++++++.++.+|....++++.|++++|.+.+.. +..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 56889999999999998876788999999999988654 455899999999999999777777889999999999999
Q ss_pred cccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc
Q 044176 96 NLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (362)
.++ .++...+...++|++|++++|.+....+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 998 666554333379999999999998554555554 489999999999999766667899999999999999998877
Q ss_pred chhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCC
Q 044176 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFL 225 (362)
Q Consensus 176 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 225 (362)
+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+....
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCCCeeCCC
Confidence 777889999999999999988654443 477899999999999986443
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.4e-26 Score=218.43 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=41.8
Q ss_pred cccccEEeccCcccCCC-cchhhcCCCCCcEEEccCCcCccCc-hhhhhcCCCcCEEEccCCccccc
Q 044176 275 ITIFTTIDLSSNQFQGE-IPQVLGDFKSLIVLNLSHNGLTGSI-PVSFANMIVLESLDLSSNKLHGR 339 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 339 (362)
+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++.. +.....+++|++|++++|++++.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 56677777777776643 3334466677777777777765432 33345677777777777777654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.3e-22 Score=173.90 Aligned_cols=223 Identities=20% Similarity=0.207 Sum_probs=121.8
Q ss_pred EEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCC
Q 044176 23 YLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP 102 (362)
Q Consensus 23 ~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 102 (362)
.++.++..++.+|..-.++++.|++++|.+++ ..+..|.++++|++|++++|.+++..+
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH---------------------LGSYSFFSFPELQVLDLSRCEIQTIED 69 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCE---------------------ECTTTTTTCTTCSEEECTTCCCCEECT
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccc---------------------cCHhHhccccCCcEEECCCCcCCccCH
Confidence 45666666666665444556666666665543 333344455555555555555542222
Q ss_pred CCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC-cchhccC
Q 044176 103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT-FPSWLGS 181 (362)
Q Consensus 103 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~ 181 (362)
..+..+ ++|++|++++|.+....+..+... ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .|..+..
T Consensus 70 ~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 70 GAYQSL-SHLSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (276)
T ss_dssp TTTTTC-TTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred HHccCC-cCCCEEECCCCccCccChhhhcCC-ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence 233333 455555555555543333333332 5555555555555544333455556666666666655442 3555666
Q ss_pred CCCCCeEEccCCcCCCccccccccccCCccc----EEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccc
Q 044176 182 LPGLKILVLRSNRFYGPLCEVNIMLPFEALR----IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ 257 (362)
Q Consensus 182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 257 (362)
+++|++|++++|.+++..+..+ ..+++++ .+++++|.+.+..+.. +.
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~-------------------------- 198 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDL--RVLHQMPLLNLSLDLSLNPMNFIQPGA-FK-------------------------- 198 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGG--HHHHTCTTCCEEEECCSSCCCEECTTS-SC--------------------------
T ss_pred CCCCCEEECCCCCCCcCCHHHh--hhhhhccccceeeecCCCcccccCccc-cC--------------------------
Confidence 6666666666666554332222 2233333 6777777665322211 10
Q ss_pred cceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314 (362)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 314 (362)
..+|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 199 -----------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 199 -----------------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp -----------------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred -----------------CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 2357788888888876666667778888888888888774
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.6e-23 Score=175.68 Aligned_cols=199 Identities=20% Similarity=0.237 Sum_probs=130.0
Q ss_pred CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176 18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN 95 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 95 (362)
+++|+.|+++++.++.++. ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 4777777777777777665 45677777777777766533 344677777777777777666666677777777777777
Q ss_pred cccccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176 96 NLSGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174 (362)
Q Consensus 96 ~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (362)
+++ .++.. +..+ ++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 120 ~l~-~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 120 QLQ-SLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CCC-CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCC-ccCHHHhccC-CCCCEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 776 34433 3444 5677777777777633333333 336777777777777755555566777777777777777666
Q ss_pred cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228 (362)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 228 (362)
.+..+..+++|++|++++|.+.+ .+++++.+++..|.+.+.+|.+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred CHHHHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccCc
Confidence 66566677777777777776542 2456666666666666655544
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.2e-23 Score=187.34 Aligned_cols=257 Identities=18% Similarity=0.141 Sum_probs=186.0
Q ss_pred EEccCcccccCCcccccCCCCCCEEEcccCcccccCC----CCcccccc-cccEEEcccccccCcchhhhhcC----CCC
Q 044176 66 FLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP----PCLGNFST-QLTILHLNNNYLQGRIPDAFANG----SCD 136 (362)
Q Consensus 66 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~ 136 (362)
+.++++.+.+.+|..+...++|++|++++|.+++..+ ..+..+ + +|++|++++|.+.+..+..+... .++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5677888887777777777779999999999984333 444445 5 89999999999987667666553 278
Q ss_pred ccEEeccCCcccCCCchhhhc----C-CCCcEEEccCCCCCCCcchhc----cC-CCCCCeEEccCCcCCCcccccc--c
Q 044176 137 LRSLGLNSNKLRGSFPRYLAD----C-TGLEVVNVGNNMIGDTFPSWL----GS-LPGLKILVLRSNRFYGPLCEVN--I 204 (362)
Q Consensus 137 L~~L~l~~~~~~~~~~~~~~~----l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~~~~~--~ 204 (362)
|++|++++|.+++..+..++. + ++|+.|++++|.+++..+..+ .. .++|++|++++|.+.+...... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766665444 4 899999999999977665443 34 3699999999999875433222 2
Q ss_pred cccCC-cccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc-ccccEEe
Q 044176 205 MLPFE-ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII-TIFTTID 282 (362)
Q Consensus 205 ~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ 282 (362)
+..++ +|++|++++|.+.+..+..+...+.. . ++|+.|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---------------------------------------~~~~L~~L~ 202 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLAS---------------------------------------IPASVTSLD 202 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT---------------------------------------SCTTCCEEE
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHh---------------------------------------CCCCCCEEE
Confidence 34444 89999999999986555443222111 3 4799999
Q ss_pred ccCcccCCC----cchhhcC-CCCCcEEEccCCcCccCchh----hhhcCCCcCEEEccCCcccccCchhhh----hhHh
Q 044176 283 LSSNQFQGE----IPQVLGD-FKSLIVLNLSHNGLTGSIPV----SFANMIVLESLDLSSNKLHGRIPEQFV----DAEI 349 (362)
Q Consensus 283 l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~----~l~~ 349 (362)
+++|.+++. ++..+.. .++|++|++++|.+++..+. .+..++.|+.|++++|.+.+..++.+. .++.
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 999999864 3444544 46999999999999976553 357779999999999996654444322 2334
Q ss_pred hhccCCCccccCC
Q 044176 350 CSSFARPDLYTNA 362 (362)
Q Consensus 350 L~~l~~~~l~~n~ 362 (362)
++.|...++++|+
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 4445555788774
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3e-23 Score=177.38 Aligned_cols=195 Identities=22% Similarity=0.259 Sum_probs=94.0
Q ss_pred CCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 20 SLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
++..+++..+.+.+... ..+++|+.|++++|.+.... +..+++|++|++++|.+.+. ..+..+++|++|++++|.+
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence 34455555555555444 35566666666666655422 22355555555555555432 3455555555555555555
Q ss_pred cccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176 98 SGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176 (362)
Q Consensus 98 ~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (362)
+ .++.. +..+ ++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 98 ~-~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 98 Q-SLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp C-CCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred C-ccChhHhcCC-cCCCEEECCCCcCCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 5 23322 2333 45555555555554222222222 2455555555555554333444455555555555555544444
Q ss_pred hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221 (362)
Q Consensus 177 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 221 (362)
..++.+++|++|++++|.+.+..+.. +..+++|+.|++++|.+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCc
Confidence 44444555555555555444322221 13344444444444433
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=9.5e-24 Score=189.83 Aligned_cols=240 Identities=18% Similarity=0.184 Sum_probs=147.5
Q ss_pred CCccEEEccCcccccCCc----ccccCCCCCCEEEcccCccc---ccCCCCc-------ccccccccEEEcccccccC--
Q 044176 61 PSTRAFLFSNNKLFGQIP----PSIYSLSSLEYISLSHNNLS---GTIPPCL-------GNFSTQLTILHLNNNYLQG-- 124 (362)
Q Consensus 61 ~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~---~~~~~~l-------~~~~~~L~~L~l~~~~~~~-- 124 (362)
++|++|++++|.+....+ ..+..+++|++|++++|.+. +.+|..+ ..+ ++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCCCCTTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEECCCCcCCHHH
Confidence 444555555555443322 23455666666666665332 2233332 233 567777777776654
Q ss_pred --cchhhhhcCCCCccEEeccCCcccCCCchhhh----cC---------CCCcEEEccCCCCCC-Ccc---hhccCCCCC
Q 044176 125 --RIPDAFANGSCDLRSLGLNSNKLRGSFPRYLA----DC---------TGLEVVNVGNNMIGD-TFP---SWLGSLPGL 185 (362)
Q Consensus 125 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~L 185 (362)
.+|..+... ++|++|++++|.++...+..+. .+ ++|+.|++++|.+++ ..+ ..+..+++|
T Consensus 111 ~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 244455443 6777777777776533333332 23 788888888887752 233 345667788
Q ss_pred CeEEccCCcCCCccc--ccc-ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceee
Q 044176 186 KILVLRSNRFYGPLC--EVN-IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTV 262 (362)
Q Consensus 186 ~~L~l~~n~~~~~~~--~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 262 (362)
++|++++|.+..... ... .+..+++|+.|++++|.+.......+...
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~------------------------------ 239 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA------------------------------ 239 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH------------------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH------------------------------
Confidence 888888887763210 111 34667888888888888752111111000
Q ss_pred eecCcchHhhhhcccccEEeccCcccCCC----cchhhc--CCCCCcEEEccCCcCcc----Cchhhh-hcCCCcCEEEc
Q 044176 263 TVKGRDLVLKRIITIFTTIDLSSNQFQGE----IPQVLG--DFKSLIVLNLSHNGLTG----SIPVSF-ANMIVLESLDL 331 (362)
Q Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~--~~~~L~~L~l~~n~i~~----~~~~~~-~~~~~L~~L~l 331 (362)
...+++|+.|++++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++
T Consensus 240 ---------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 240 ---------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp ---------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred ---------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 11157789999999998765 345553 38899999999999986 367776 66899999999
Q ss_pred cCCcccccCc
Q 044176 332 SSNKLHGRIP 341 (362)
Q Consensus 332 ~~n~~~~~~~ 341 (362)
++|++++..+
T Consensus 311 ~~N~l~~~~~ 320 (386)
T 2ca6_A 311 NGNRFSEEDD 320 (386)
T ss_dssp TTSBSCTTSH
T ss_pred cCCcCCcchh
Confidence 9999997664
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.8e-22 Score=170.28 Aligned_cols=203 Identities=22% Similarity=0.264 Sum_probs=132.9
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (362)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+....+..+... ++|++|++++|.+++. +. ...+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~-~~-~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKL-QV-DGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEE-EC-CSCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcc-cC-CCCCCc
Confidence 456667777777777776 6665543 457777777777764444455443 6777777777776633 22 256677
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176 161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240 (362)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 240 (362)
|+.|++++|.+. .+|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+.. +..
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~~-------- 146 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGNELKTLPPGL-LTP-------- 146 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST--TTTCTTCCEEECTTSCCCCCCTTT-TTT--------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHH--HcCCCCCCEEECCCCCCCccChhh-ccc--------
Confidence 777777777774 44555667777777777777776544333 356677777777777776332211 111
Q ss_pred ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhh
Q 044176 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF 320 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 320 (362)
+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+
T Consensus 147 ----------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 147 ----------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp ----------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ----------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 456777777777777555556677777788888777777 566667
Q ss_pred hcCCCcCEEEccCCccc
Q 044176 321 ANMIVLESLDLSSNKLH 337 (362)
Q Consensus 321 ~~~~~L~~L~l~~n~~~ 337 (362)
..+++|+.+++++|++.
T Consensus 192 ~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTCCCSEEECCSCCBC
T ss_pred cccccCCeEEeCCCCcc
Confidence 77777778888777765
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.4e-21 Score=168.33 Aligned_cols=202 Identities=23% Similarity=0.225 Sum_probs=171.0
Q ss_pred cccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEE
Q 044176 15 SQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYIS 91 (362)
Q Consensus 15 ~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 91 (362)
...+++++.++++++.++.++....++++.|++++|.+.+. .+..+++|++|++++|.+....+ ...+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 44568999999999999999987778999999999999864 35668999999999999986433 37899999999
Q ss_pred cccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC
Q 044176 92 LSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171 (362)
Q Consensus 92 L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (362)
+++|+++ .+|..+..+ ++|++|++++|+++...+..+.. +++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 84 Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp CCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCC-cCchhhccC-CCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 9999998 888877777 79999999999998544455554 48999999999999977777888999999999999999
Q ss_pred CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCC
Q 044176 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF 224 (362)
Q Consensus 172 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 224 (362)
....+..+..+++|+.|++++|.+....... ...++|+.+++++|.+...
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~---~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGF---FGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCCCSEEECCSCCBCCS
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhh---cccccCCeEEeCCCCccCc
Confidence 8776677889999999999999998644333 4567899999999998643
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.5e-23 Score=185.07 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=136.5
Q ss_pred CcEEEccCCcCCCCCCCCC--CCccEEEccCcccccCCcccccCCCCCCEEEcccCccccc-CCCCcccccccccEEEcc
Q 044176 42 ITVLNLQNNTIQGTILVPP--PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT-IPPCLGNFSTQLTILHLN 118 (362)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~ 118 (362)
++.++++++.+....+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+ ++|++|+++
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECT
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCc
Confidence 5555555555442222222 4555556666555544333 34466666666666665532 33334344 466666666
Q ss_pred cccccCcchhhhhcCCCCccEEeccCC-cccCC-CchhhhcCCCCcEEEccCC-CCCCC-cchhccCCC-CCCeEEccCC
Q 044176 119 NNYLQGRIPDAFANGSCDLRSLGLNSN-KLRGS-FPRYLADCTGLEVVNVGNN-MIGDT-FPSWLGSLP-GLKILVLRSN 193 (362)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~n 193 (362)
+|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 127 GLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 66655445555544 356666666666 34421 3444555666666666666 55432 344455566 6666666666
Q ss_pred c--CCC-ccccccccccCCcccEEeccCCc-ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcch
Q 044176 194 R--FYG-PLCEVNIMLPFEALRIIDLSHNE-FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDL 269 (362)
Q Consensus 194 ~--~~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (362)
. +++ ..+. .+..+++|++|++++|. +++..+..+
T Consensus 206 ~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l---------------------------------------- 243 (336)
T 2ast_B 206 RKNLQKSDLST--LVRRCPNLVHLDLSDSVMLKNDCFQEF---------------------------------------- 243 (336)
T ss_dssp GGGSCHHHHHH--HHHHCTTCSEEECTTCTTCCGGGGGGG----------------------------------------
T ss_pred cccCCHHHHHH--HHhhCCCCCEEeCCCCCcCCHHHHHHH----------------------------------------
Confidence 2 221 1111 12445666666666665 332222110
Q ss_pred HhhhhcccccEEeccCcc-cCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhh
Q 044176 270 VLKRIITIFTTIDLSSNQ-FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVD 346 (362)
Q Consensus 270 ~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 346 (362)
..+++|+.|++++|. +++.....+..+++|+.|++++| +++.....+. ..++.|++++|++++..|..+..
T Consensus 244 ---~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 244 ---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred ---hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 115678888888874 33333335677888888888888 5533333332 23556667888888877766554
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=7.2e-24 Score=190.64 Aligned_cols=244 Identities=18% Similarity=0.229 Sum_probs=177.9
Q ss_pred CCcccccCCCCCCEEEcccCcccccC----CCCcccccccccEEEccccc---ccCcchhhhh------cCCCCccEEec
Q 044176 76 QIPPSIYSLSSLEYISLSHNNLSGTI----PPCLGNFSTQLTILHLNNNY---LQGRIPDAFA------NGSCDLRSLGL 142 (362)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~~~~~~~~----~~~l~~~~~~L~~L~l~~~~---~~~~~~~~~~------~~~~~L~~L~l 142 (362)
.++..+..+++|++|++++|.+++.. +..+..+ ++|++|++++|. +.+.+|..+. ..+++|++|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 46677888999999999999998532 2334455 789999999964 3445565552 23489999999
Q ss_pred cCCcccC----CCchhhhcCCCCcEEEccCCCCCCCcchhcc----CC---------CCCCeEEccCCcCCCccccc--c
Q 044176 143 NSNKLRG----SFPRYLADCTGLEVVNVGNNMIGDTFPSWLG----SL---------PGLKILVLRSNRFYGPLCEV--N 203 (362)
Q Consensus 143 ~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~n~~~~~~~~~--~ 203 (362)
++|.++. .++..+..+++|+.|++++|.+++..+..+. .+ ++|++|++++|.+....... .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999986 3566788899999999999998644333333 33 89999999999887322221 2
Q ss_pred ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEec
Q 044176 204 IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL 283 (362)
Q Consensus 204 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 283 (362)
.+..+++|++|++++|.+.......... .....+++|+.|++
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------EGLAYCQELKVLDL 223 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------TTGGGCTTCCEEEC
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------HHhhcCCCccEEEC
Confidence 4467889999999999876211111110 00112678999999
Q ss_pred cCcccC----CCcchhhcCCCCCcEEEccCCcCccC----chhhhhc--CCCcCEEEccCCcccc----cCchhh-hhhH
Q 044176 284 SSNQFQ----GEIPQVLGDFKSLIVLNLSHNGLTGS----IPVSFAN--MIVLESLDLSSNKLHG----RIPEQF-VDAE 348 (362)
Q Consensus 284 ~~n~~~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~~-~~l~ 348 (362)
++|.++ ..++..+..+++|+.|+|++|.+++. ++..+.. +++|++|++++|++++ .+|..+ ..++
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 999996 45677888999999999999999865 4566644 9999999999999997 477766 4467
Q ss_pred hhhccCCCccccC
Q 044176 349 ICSSFARPDLYTN 361 (362)
Q Consensus 349 ~L~~l~~~~l~~n 361 (362)
+|++| ++++|
T Consensus 304 ~L~~L---~l~~N 313 (386)
T 2ca6_A 304 DLLFL---ELNGN 313 (386)
T ss_dssp TCCEE---ECTTS
T ss_pred CceEE---EccCC
Confidence 77776 66666
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=4e-23 Score=196.22 Aligned_cols=329 Identities=12% Similarity=-0.004 Sum_probs=224.3
Q ss_pred ccCCCCcEEEcCCCccccccc-------CCcCCCcEEEccCCcCCCCC-------CCCCCCccEEEccCcccccCCcccc
Q 044176 16 QRWKSLTYLDISNNFLTQIEQ-------HPWKNITVLNLQNNTIQGTI-------LVPPPSTRAFLFSNNKLFGQIPPSI 81 (362)
Q Consensus 16 ~~~~~L~~L~ls~~~i~~~~~-------~~~~~L~~L~l~~n~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~ 81 (362)
..+++|++|++++|.+++... ..+++|+.|++++|.+.+.. ...+++|++|++++|.+.+ ++..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence 356999999999999876642 36789999999999887322 1238999999999999885 67888
Q ss_pred cCCCCCCEEEcccCccc---ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhc
Q 044176 82 YSLSSLEYISLSHNNLS---GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLAD 157 (362)
Q Consensus 82 ~~l~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 157 (362)
.++++|++|++++.... ...+..+... ++|+.++++++... .+|..+.. +++|++|++++|.+++... ..+..
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPILFPF-AAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHh
Confidence 99999999999864332 1233445555 68999999886433 55655554 4899999999998664333 34678
Q ss_pred CCCCcEEEccCCCCCCCcchhccCCCCCCeEEccC-----------CcCCCccccccccccCCcccEEeccCCcccCCCc
Q 044176 158 CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS-----------NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP 226 (362)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 226 (362)
+++|+.|++.++......+.....+++|++|++++ +.+++..... ....+++|++|+++.+.+++...
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA-LAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH-HHHHCTTCSEEEEEESCCCHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH-HHhhCccCeEEEeecCCccHHHH
Confidence 89999999984322222333346788999999993 3443221111 12457899999998888876666
Q ss_pred hhHHhhhhhhhhccccCCC-cccccCCccccccceeeeecCcchHhhhhcccccEEeccCcc--cCCCcchhhc-CCCCC
Q 044176 227 RWIFVSLETMKNVDEKGSD-GLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ--FQGEIPQVLG-DFKSL 302 (362)
Q Consensus 227 ~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~-~~~~L 302 (362)
..+...+++|+.+++..+. ...+.+.. .+.........+++|+.|++++|. +++..+..+. .+++|
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p----------~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLP----------LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCC----------CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCch----------HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 6655568888988886432 11111100 000111223347899999997654 6655544443 58999
Q ss_pred cEEEccCCcCccC-chhhhhcCCCcCEEEccCCcccccCch-hhhhhHhhhccCCCccccCC
Q 044176 303 IVLNLSHNGLTGS-IPVSFANMIVLESLDLSSNKLHGRIPE-QFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 303 ~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~l~~~~l~~n~ 362 (362)
+.|++++|.+++. ++..+..+++|++|++++|++++.... .+..+++|++| ++++|+
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L---~ls~n~ 524 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL---WVQGYR 524 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE---EEESCB
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee---ECcCCc
Confidence 9999999998853 344568899999999999998765333 34456666665 666663
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=2e-24 Score=205.31 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=69.7
Q ss_pred ccCCCCcEEEcCCCccccccc----CCcCCCcEEEccCC-cCCCC----CCCCCCCccEEEccCcccccCCccccc----
Q 044176 16 QRWKSLTYLDISNNFLTQIEQ----HPWKNITVLNLQNN-TIQGT----ILVPPPSTRAFLFSNNKLFGQIPPSIY---- 82 (362)
Q Consensus 16 ~~~~~L~~L~ls~~~i~~~~~----~~~~~L~~L~l~~n-~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~---- 82 (362)
..+++|++|+++++.+++... ..+++|+.|++++| .+... ....+++|++|++++|.+.+..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 345788888888877665443 24677888888777 33321 112367788888887776654443333
Q ss_pred CCCCCCEEEcccCc--ccccCCCCcccccccccEEEcccc-cccCcchhhhhcCCCCccEEecc
Q 044176 83 SLSSLEYISLSHNN--LSGTIPPCLGNFSTQLTILHLNNN-YLQGRIPDAFANGSCDLRSLGLN 143 (362)
Q Consensus 83 ~l~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~ 143 (362)
.+++|++|++++|. +.......+....++|++|++++| .+. .++..+... ++|++|.++
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~-~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRA-PQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHC-TTCSEEECS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcC-CcceEcccc
Confidence 45677788877775 211101111111256777777766 222 233333332 455555433
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3e-22 Score=176.66 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=173.5
Q ss_pred CCccEEEccCcccccCCcccccCC--CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCc-chhhhhcCCCCc
Q 044176 61 PSTRAFLFSNNKLFGQIPPSIYSL--SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGR-IPDAFANGSCDL 137 (362)
Q Consensus 61 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L 137 (362)
..++.++++++.+. +..+..+ ++++.|++++|.+.+ .+..++.+ ++|++|++++|.+.+. ++..+.. +++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~-~~~~~~~~-~~L~~L~L~~~~l~~~~~~~~~~~-~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQ-PLAEHFSP-FRVQHMDLSNSVIEVSTLHGILSQ-CSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECS-CCCSCCCC-BCCCEEECTTCEECHHHHHHHHTT-BCCC
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccc-cchhhccC-CCCCEEEccCCCcCHHHHHHHHhh-CCCC
Confidence 34789999998775 4566667 899999999999984 44446666 7899999999998754 5555554 4899
Q ss_pred cEEeccCCcccCCCchhhhcCCCCcEEEccCC-CCCCC-cchhccCCCCCCeEEccCC-cCCCcc-ccccccccCC-ccc
Q 044176 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN-MIGDT-FPSWLGSLPGLKILVLRSN-RFYGPL-CEVNIMLPFE-ALR 212 (362)
Q Consensus 138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~~-~~~~~~~~~~-~L~ 212 (362)
++|++++|.+++..+..++.+++|+.|++++| .+++. .+..+..+++|++|++++| .+++.. +. .+..++ +|+
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~l~~~L~ 198 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV--AVAHVSETIT 198 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH--HHHHSCTTCC
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH--HHHhcccCCC
Confidence 99999999988777788888999999999999 56542 5566778999999999999 776421 22 236678 999
Q ss_pred EEeccCCc--ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcc-cC
Q 044176 213 IIDLSHNE--FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ-FQ 289 (362)
Q Consensus 213 ~L~l~~n~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~ 289 (362)
+|++++|. +.+ ..+. .....+++|+.|++++|. ++
T Consensus 199 ~L~l~~~~~~~~~---~~l~---------------------------------------~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 199 QLNLSGYRKNLQK---SDLS---------------------------------------TLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp EEECCSCGGGSCH---HHHH---------------------------------------HHHHHCTTCSEEECTTCTTCC
T ss_pred EEEeCCCcccCCH---HHHH---------------------------------------HHHhhCCCCCEEeCCCCCcCC
Confidence 99999884 331 1100 011226789999999999 77
Q ss_pred CCcchhhcCCCCCcEEEccCCc-CccCchhhhhcCCCcCEEEccCCcccc
Q 044176 290 GEIPQVLGDFKSLIVLNLSHNG-LTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
+..+..+..+++|+.|++++|. +.......+.++++|++|++++| +++
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 7778888999999999999995 44333446889999999999999 443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.9e-21 Score=166.51 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=68.3
Q ss_pred CCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccE
Q 044176 60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS 139 (362)
Q Consensus 60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 139 (362)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+ ++|++|++++|.+.. ++ .+.. +++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l-~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNL-TKITELELSGNPLKN-VS-AIAG-LQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTC-CSCCEEECCSCCCSC-CG-GGTT-CTTCCE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccC-CCCCEEEccCCcCCC-ch-hhcC-CCCCCE
Confidence 4555555555555543 22 3555555555555555555 3333 3333 455555555555542 22 2222 245555
Q ss_pred EeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176 140 LGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN 219 (362)
Q Consensus 140 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 219 (362)
|++++|.+++. + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDN 183 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCC
Confidence 55555555422 2 24445555555555554433222 4444455555555444443211 234444444444444
Q ss_pred ccc
Q 044176 220 EFT 222 (362)
Q Consensus 220 ~~~ 222 (362)
.+.
T Consensus 184 ~l~ 186 (308)
T 1h6u_A 184 KIS 186 (308)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=4.6e-22 Score=173.35 Aligned_cols=231 Identities=18% Similarity=0.179 Sum_probs=151.3
Q ss_pred CCccEEEccCcccccCCcc---cccCCCCCCEEEcccCcccccCCCCc--ccccccccEEEcccccccCcch----hhhh
Q 044176 61 PSTRAFLFSNNKLFGQIPP---SIYSLSSLEYISLSHNNLSGTIPPCL--GNFSTQLTILHLNNNYLQGRIP----DAFA 131 (362)
Q Consensus 61 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~----~~~~ 131 (362)
..++.+.+.++.+...... .+..+++|++|++++|.+++..|..+ ..+ ++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhh
Confidence 3467777777765421111 12235668888888888886667666 445 688888888888775433 2223
Q ss_pred cCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC--c--chhccCCCCCCeEEccCCcCCCcccccc-ccc
Q 044176 132 NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT--F--PSWLGSLPGLKILVLRSNRFYGPLCEVN-IML 206 (362)
Q Consensus 132 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~ 206 (362)
.+++|++|++++|.+.+..+..+..+++|+.|++++|++.+. . +..++.+++|++|++++|.++....... .+.
T Consensus 143 -~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 -LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp -BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred -hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 347888888888888766667777888888888888876432 1 1223567788888888887754222211 124
Q ss_pred cCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCc
Q 044176 207 PFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSN 286 (362)
Q Consensus 207 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 286 (362)
.+++|++|++++|.+.+..|..+. .+. .+++|+.|++++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~-~~~---------------------------------------~~~~L~~L~Ls~N 261 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAP-RCM---------------------------------------WSSALNSLNLSFA 261 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCS-SCC---------------------------------------CCTTCCCEECCSS
T ss_pred cCCCCCEEECCCCCCCccchhhHH-hcc---------------------------------------CcCcCCEEECCCC
Confidence 567788888888877755443210 000 0357888888888
Q ss_pred ccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176 287 QFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 887 4555543 7888888888888843 33 6777888888888888874
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=3.5e-22 Score=174.12 Aligned_cols=230 Identities=20% Similarity=0.196 Sum_probs=152.5
Q ss_pred CCCCCEEEcccCcccccCCC---CcccccccccEEEcccccccCcchhhhh-cCCCCccEEeccCCcccCCCc----hhh
Q 044176 84 LSSLEYISLSHNNLSGTIPP---CLGNFSTQLTILHLNNNYLQGRIPDAFA-NGSCDLRSLGLNSNKLRGSFP----RYL 155 (362)
Q Consensus 84 l~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~ 155 (362)
...++.+.+.++.++..... ..... ++|++|++++|.+.+..|..+. ..+++|++|++++|.+++..+ ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34567777777766521101 11122 4688888888888777776662 334788888888888875433 344
Q ss_pred hcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCc--cccccccccCCcccEEeccCCcccCCCchhHHhhh
Q 044176 156 ADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP--LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233 (362)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 233 (362)
..+++|+.|++++|.+.+..+..++.+++|++|++++|++.+. .+....+..+++|++|++++|.+.. .+....
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--- 217 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA--- 217 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH---
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH---
Confidence 5688888888888888777777788888888888888876542 1112223567788888888888752 221100
Q ss_pred hhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCC---CCCcEEEccCC
Q 044176 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF---KSLIVLNLSHN 310 (362)
Q Consensus 234 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n 310 (362)
.....+++|+.|++++|.+++..|..+..+ ++|+.|++++|
T Consensus 218 ------------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 218 ------------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp ------------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred ------------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 001125678888888888887666666555 68888888888
Q ss_pred cCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176 311 GLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA 362 (362)
Q Consensus 311 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~ 362 (362)
+++ .+|..+. ++|++|++++|++++. |. +..+++|+.| ++++|+
T Consensus 262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L---~L~~N~ 305 (310)
T 4glp_A 262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL---TLDGNP 305 (310)
T ss_dssp CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE---ECSSTT
T ss_pred CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE---ECcCCC
Confidence 888 5566554 7888888888888853 33 4555555554 777764
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.4e-20 Score=163.62 Aligned_cols=191 Identities=24% Similarity=0.335 Sum_probs=148.3
Q ss_pred cCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176 17 RWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH 94 (362)
Q Consensus 17 ~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 94 (362)
.+++|+.|+++++.++.++. ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+. +.+..+++|++|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 35889999999998888776 46788999999999887644 55588899999999888753 4688888999999999
Q ss_pred CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176 95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174 (362)
Q Consensus 95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (362)
|.++ .++. +..+ ++|++|++++|.+.+ ++. +.. +++|++|++++|.+++. +. +..+++|+.|++++|.+.+.
T Consensus 117 n~l~-~~~~-l~~l-~~L~~L~l~~n~l~~-~~~-l~~-l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 117 TQIT-DVTP-LAGL-SNLQVLYLDLNQITN-ISP-LAG-LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp SCCC-CCGG-GTTC-TTCCEEECCSSCCCC-CGG-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCC-Cchh-hcCC-CCCCEEECCCCccCc-Ccc-ccC-CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 9887 4543 5555 688999999888874 333 443 47889999999888743 33 78888899999988888665
Q ss_pred cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223 (362)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 223 (362)
.+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCeeec
Confidence 43 7788889999998888876442 4778888899988888863
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2.4e-20 Score=157.38 Aligned_cols=180 Identities=20% Similarity=0.217 Sum_probs=91.2
Q ss_pred CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176 19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS 98 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 98 (362)
+..+.++++++.++.++....++++.|++++|.+.+ ..+..|.++++|++|++++|.++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~---------------------~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLAT---------------------LSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCC---------------------CCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCc---------------------cCHhHhcCcccCCEEECCCCcCC
Confidence 345677777777777776555566666666665554 33344444455555555555444
Q ss_pred ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176 99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178 (362)
Q Consensus 99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 178 (362)
+..+..+..+ ++|++|++++|.+....+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 73 ~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 73 TLSAGVFDDL-TELGTLGLANNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp CCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCHhHhccC-CcCCEEECCCCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 2222223333 3455555555544422222222 2245555555555555433344455555555555555554444444
Q ss_pred ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223 (362)
Q Consensus 179 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 223 (362)
+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCceeC
Confidence 555555555555555555433322 2445556666666665543
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=8.8e-20 Score=153.95 Aligned_cols=178 Identities=21% Similarity=0.243 Sum_probs=144.6
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
..++++++++.+. .+|..+. +.+++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+.. +++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDD-LTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTT-CTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHhcc-CCcCCEEE
Confidence 3456777777776 4555553 689999999999995555566666 79999999999998655555555 48999999
Q ss_pred ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221 (362)
Q Consensus 142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 221 (362)
+++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--FDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH--cCcCcCCCEEECCCCcC
Confidence 9999999777778899999999999999998777777889999999999999998755533 47789999999999999
Q ss_pred cCCCchhHHhhhhhhhhccccCCCcc
Q 044176 222 TGFLPRWIFVSLETMKNVDEKGSDGL 247 (362)
Q Consensus 222 ~~~~~~~~~~~~~~l~~l~~~~~~~~ 247 (362)
.+..+ ..+..+++++.+++.++...
T Consensus 168 ~~~~~-~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 168 QSVPH-GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SCCCT-TTTTTCTTCCEEECCSCCBC
T ss_pred CccCH-HHHhCCCCCCEEEeeCCcee
Confidence 85444 44788899999999887643
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=9.8e-21 Score=158.63 Aligned_cols=191 Identities=19% Similarity=0.249 Sum_probs=109.9
Q ss_pred CCCcEEEcCCCcccccccC---CcCCCcEEEccCCc-CCCCC---CCCCCCccEEEccC-cccccCCcccccCCCCCCEE
Q 044176 19 KSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNT-IQGTI---LVPPPSTRAFLFSN-NKLFGQIPPSIYSLSSLEYI 90 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~-~~~~~---~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 90 (362)
++++.|++++|+++.+++. .+++|+.|++++|. ++... +..+++|++|++++ |.+....+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4677777777777766652 45667777777665 54322 33466666677666 66665555566666667777
Q ss_pred EcccCcccccCCCCccccccccc---EEEcccc-cccCcchhhhhcCCCCcc-EEeccCCcccCCCchhhhcCCCCcEEE
Q 044176 91 SLSHNNLSGTIPPCLGNFSTQLT---ILHLNNN-YLQGRIPDAFANGSCDLR-SLGLNSNKLRGSFPRYLADCTGLEVVN 165 (362)
Q Consensus 91 ~L~~~~~~~~~~~~l~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (362)
++++|.++ .+|. +..+ ++|+ +|++++| .+. .+|......+++|+ +|++++|.++...+..+.. ++|+.|+
T Consensus 111 ~l~~n~l~-~lp~-~~~l-~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKV-YSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEECCC-SCCC-CTTC-CBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred eCCCCCCc-cccc-cccc-cccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 77666666 4554 3333 4555 6666666 555 33333222336666 6666666666222223333 5666666
Q ss_pred ccCCC-CCCCcchhccCC-CCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176 166 VGNNM-IGDTFPSWLGSL-PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN 219 (362)
Q Consensus 166 l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 219 (362)
+++|+ +++..+..+..+ ++|+.|++++|++++.... .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----HhccCceeeccCc
Confidence 66663 554444556666 6666666666666543221 3456666665543
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.5e-21 Score=160.73 Aligned_cols=179 Identities=18% Similarity=0.157 Sum_probs=96.8
Q ss_pred cccEEEcccccccCcchhhhhcCCCCccEEeccCCc-ccCCCchhhhcCCCCcEEEccC-CCCCCCcchhccCCCCCCeE
Q 044176 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNK-LRGSFPRYLADCTGLEVVNVGN-NMIGDTFPSWLGSLPGLKIL 188 (362)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 188 (362)
++++|++++|.++...+..+.. +++|++|++++|. ++...+..|..+++|+.|++++ |.+....+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~-l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTT-CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccC-CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4556666666555222223332 3566666666664 5533344555666666666665 55554444555666666666
Q ss_pred EccCCcCCCccccccccccCCccc---EEeccCC-cccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeee
Q 044176 189 VLRSNRFYGPLCEVNIMLPFEALR---IIDLSHN-EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTV 264 (362)
Q Consensus 189 ~l~~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (362)
++++|.+.+. +. +..+++|+ +|++++| .+.+..+.. +..
T Consensus 111 ~l~~n~l~~l-p~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~-------------------------------- 153 (239)
T 2xwt_C 111 GIFNTGLKMF-PD---LTKVYSTDIFFILEITDNPYMTSIPVNA-FQG-------------------------------- 153 (239)
T ss_dssp EEEEECCCSC-CC---CTTCCBCCSEEEEEEESCTTCCEECTTT-TTT--------------------------------
T ss_pred eCCCCCCccc-cc---cccccccccccEEECCCCcchhhcCccc-ccc--------------------------------
Confidence 6666665542 22 24444554 6666666 554221111 111
Q ss_pred cCcchHhhhhccccc-EEeccCcccCCCcchhhcCCCCCcEEEccCCc-CccCchhhhhcC-CCcCEEEccCCcccc
Q 044176 265 KGRDLVLKRIITIFT-TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG-LTGSIPVSFANM-IVLESLDLSSNKLHG 338 (362)
Q Consensus 265 ~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~-~~L~~L~l~~n~~~~ 338 (362)
+++|+ .|++++|+++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|++|++++|+++.
T Consensus 154 ----------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 154 ----------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp ----------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred ----------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 45566 6666666665333333333 566666776663 664445556666 667777777766664
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=3.4e-23 Score=196.76 Aligned_cols=332 Identities=13% Similarity=0.065 Sum_probs=182.6
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCC-ccccc--cc--CCcCCCcEEEccCCcCCCCC-------CCCCCCccEEEcc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNN-FLTQI--EQ--HPWKNITVLNLQNNTIQGTI-------LVPPPSTRAFLFS 69 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~~--~~--~~~~~L~~L~l~~n~~~~~~-------~~~~~~L~~L~l~ 69 (362)
++|.+++..+..+...+++|+.|++++| .++.. +. ..+++|++|++++|.+++.. +..+++|++|+++
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~ 192 (594)
T 2p1m_B 113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS 192 (594)
T ss_dssp ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECT
T ss_pred eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEec
Confidence 4566766656555545699999999988 55542 22 36789999999988866422 2347789999998
Q ss_pred Ccc--cccC-CcccccCCCCCCEEEcccC-cccccCCCCcccccccccEEEccccc------------------------
Q 044176 70 NNK--LFGQ-IPPSIYSLSSLEYISLSHN-NLSGTIPPCLGNFSTQLTILHLNNNY------------------------ 121 (362)
Q Consensus 70 ~~~--~~~~-~~~~~~~l~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~------------------------ 121 (362)
+|. +... ++..+.++++|++|++++| .+. .++..+..+ ++|++|++..+.
T Consensus 193 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 193 CLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp TCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 886 2211 1122345688999998887 333 344334343 466666644331
Q ss_pred --ccC----cchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCcEEEccCCCCCCCc-chhccCCCCCCeEEccC-
Q 044176 122 --LQG----RIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILVLRS- 192 (362)
Q Consensus 122 --~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~- 192 (362)
+.. .++..+.. +++|++|++++|.+++.. ...+..+++|+.|++.+| +.+.. +.....+++|++|++..
T Consensus 271 s~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 271 SGFWDAVPAYLPAVYSV-CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp ECCBTCCGGGGGGGHHH-HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECS
T ss_pred cCCcccchhhHHHHHHh-hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecC
Confidence 110 12222222 367888888877755322 223456777888887776 32221 22223467777777743
Q ss_pred --------CcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcccc-----CCCcccccC----Cc--
Q 044176 193 --------NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEK-----GSDGLYMQG----EE-- 253 (362)
Q Consensus 193 --------n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~----~~-- 253 (362)
+.+++...... ...+++|+.|.+..+.+++.....+...+++|+.+++. .+..+.... ..
T Consensus 349 ~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 349 EPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp CTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred cccccccCCCCCHHHHHHH-HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 22222111111 12366777777776766644444444456777777766 222222100 00
Q ss_pred -cccccceeeeecC--cc---hHhhhhcccccEEeccCcccCCCcchhh-cCCCCCcEEEccCCcCccCchh-hhhcCCC
Q 044176 254 -DYYQDSVTVTVKG--RD---LVLKRIITIFTTIDLSSNQFQGEIPQVL-GDFKSLIVLNLSHNGLTGSIPV-SFANMIV 325 (362)
Q Consensus 254 -~~~~~~~~~~~~~--~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~ 325 (362)
........+.... .. ..+...+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++
T Consensus 428 ~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred HhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 0001111111111 00 1111226677778887777765544444 5677788888887777544333 3345777
Q ss_pred cCEEEccCCcccc
Q 044176 326 LESLDLSSNKLHG 338 (362)
Q Consensus 326 L~~L~l~~n~~~~ 338 (362)
|++|++++|+++.
T Consensus 508 L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 508 MRSLWMSSCSVSF 520 (594)
T ss_dssp SSEEEEESSCCBH
T ss_pred CCEEeeeCCCCCH
Confidence 8888888777754
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=5.4e-19 Score=164.80 Aligned_cols=134 Identities=23% Similarity=0.346 Sum_probs=68.1
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| . .+ ++|++|++++|.+++ +|. +. .+|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~--~l-~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E--LP-ASLEYLDACDNRLST-LPE-LP---ASLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C--CC-TTCCEEECCSSCCSC-CCC-CC---TTCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c--cc-CCCCEEEccCCCCCC-cch-hh---cCCCEEE
Confidence 55566666665554 34333 255666666666665 455 1 12 456666666665553 444 22 2556666
Q ss_pred ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221 (362)
Q Consensus 142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 221 (362)
+++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++. +. + . ++|+.|++++|.+
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l-p~-l--~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL-PE-L--P--ESLEALDVSTNLL 192 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-C--C--TTCCEEECCSSCC
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc-ch-h--h--CCCCEEECcCCCC
Confidence 66665553 333 34555555555555543 222 345555555555555542 21 1 1 4555555555555
Q ss_pred c
Q 044176 222 T 222 (362)
Q Consensus 222 ~ 222 (362)
.
T Consensus 193 ~ 193 (571)
T 3cvr_A 193 E 193 (571)
T ss_dssp S
T ss_pred C
Confidence 4
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=6.7e-19 Score=155.94 Aligned_cols=195 Identities=15% Similarity=0.070 Sum_probs=105.0
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCC-cccccCCCCCCE-EEcccCc
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQI-PPSIYSLSSLEY-ISLSHNN 96 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~L~~~~ 96 (362)
+.+++++++++.+|..-.+++++|++++|.|+.. .+.++++|++|++++|.+.+.+ +.+|.+++++++ +.+.+|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 5678888888888776566788888887777642 3445666777777776664433 345666666654 4445566
Q ss_pred ccccCCC-CcccccccccEEEcccccccCcchhhhhcCCCCccEEeccC-CcccCCCchhhhcC-CCCcEEEccCCCCCC
Q 044176 97 LSGTIPP-CLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNS-NKLRGSFPRYLADC-TGLEVVNVGNNMIGD 173 (362)
Q Consensus 97 ~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~ 173 (362)
++ .++. .+..+ ++|++|++++|.+....+..+... ..+..+++.+ +.+....+..|..+ ..++.|++++|.+++
T Consensus 92 l~-~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 92 LL-YINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp CC-EECTTSBCCC-TTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cc-ccCchhhhhc-cccccccccccccccCCchhhccc-chhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 66 4433 33333 566666666666653222232222 3555555544 33443333344443 345566666666643
Q ss_pred CcchhccCCCCCCeEEccC-CcCCCccccccccccCCcccEEeccCCccc
Q 044176 174 TFPSWLGSLPGLKILVLRS-NRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 174 ~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
..+. .....+|+++++.+ |.+...... ++..+++|++|++++|.++
T Consensus 169 i~~~-~f~~~~L~~l~l~~~n~l~~i~~~--~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 IHNS-AFNGTQLDELNLSDNNNLEELPND--VFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ECTT-SSTTEEEEEEECTTCTTCCCCCTT--TTTTEECCSEEECTTSCCC
T ss_pred CChh-hccccchhHHhhccCCcccCCCHH--HhccCcccchhhcCCCCcC
Confidence 2222 22344555666553 333322222 2345556666666666555
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3e-19 Score=158.17 Aligned_cols=243 Identities=17% Similarity=0.102 Sum_probs=169.1
Q ss_pred cEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE-EEccccc
Q 044176 43 TVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI-LHLNNNY 121 (362)
Q Consensus 43 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~-L~l~~~~ 121 (362)
+.++.++++++.....-++++++|++++|.++.+.+.+|.++++|++|+|++|++.+.++...+...+++++ +.+.+|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 567777777775543335789999999999987666789999999999999999865676655443356654 5566678
Q ss_pred ccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCC-CCCCCcchhccCCC-CCCeEEccCCcCCCcc
Q 044176 122 LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN-MIGDTFPSWLGSLP-GLKILVLRSNRFYGPL 199 (362)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~ 199 (362)
+....|..+. .+++|++|++++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|++....
T Consensus 92 l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred ccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 8744444544 4589999999999988666666667778888888664 55444444555554 6788899998887544
Q ss_pred ccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccccc
Q 044176 200 CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT 279 (362)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 279 (362)
... ....+++++++.+++..+.++...+.. +++|+
T Consensus 171 ~~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~------------------------------------------l~~L~ 205 (350)
T 4ay9_X 171 NSA---FNGTQLDELNLSDNNNLEELPNDVFHG------------------------------------------ASGPV 205 (350)
T ss_dssp TTS---STTEEEEEEECTTCTTCCCCCTTTTTT------------------------------------------EECCS
T ss_pred hhh---ccccchhHHhhccCCcccCCCHHHhcc------------------------------------------Ccccc
Confidence 333 234678888887544333555432222 67789
Q ss_pred EEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCc
Q 044176 280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNK 335 (362)
Q Consensus 280 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 335 (362)
.|++++|+++...+. .+.+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus 206 ~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 206 ILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp EEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 999999999854443 35677777776665444565 48889999999998654
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=7.2e-19 Score=143.98 Aligned_cols=175 Identities=22% Similarity=0.248 Sum_probs=99.4
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI 101 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 101 (362)
+.++++++.++.++....++++.|++++|.++ ...+..|.++++|++|++++|+++ .+
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~---------------------~~~~~~~~~l~~L~~L~l~~n~l~-~~ 67 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLK---------------------SLPNGVFDELTSLTQLYLGGNKLQ-SL 67 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCC---------------------CCCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccC---------------------cCChhhhcccccCcEEECCCCccC-cc
Confidence 45666666666666555555666665555544 333444555666666666666665 44
Q ss_pred CCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccC
Q 044176 102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGS 181 (362)
Q Consensus 102 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 181 (362)
+...+...++|++|++++|.+.. ++......+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 43332222456666666666552 33322222356666666666666444445666666666666666665555555666
Q ss_pred CCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176 182 LPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228 (362)
Q Consensus 182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 228 (362)
+++|++|++++|.+. ..+++|+.|+++.|.+.+.+|..
T Consensus 147 l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CTTCCEEECCSCCBC---------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred CCCccEEEecCCCee---------cCCCCHHHHHHHHHhCCceeecc
Confidence 667777777666544 23456666666666666665543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=4.6e-18 Score=158.54 Aligned_cols=183 Identities=22% Similarity=0.307 Sum_probs=151.2
Q ss_pred CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc
Q 044176 20 SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG 99 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 99 (362)
+++.|++++|.++.++...+++|+.|++++|.++... ..+++|++|++++|.+++ +|. +.+ +|++|++++|.++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~- 133 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT- 133 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-
Confidence 8999999999999998877899999999999999655 668999999999999996 666 655 9999999999999
Q ss_pred cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc
Q 044176 100 TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179 (362)
Q Consensus 100 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 179 (362)
.+|. .+ ++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +
T Consensus 134 ~lp~---~l-~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 134 MLPE---LP-ALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp CCCC---CC-TTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred CCCC---cC-ccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H
Confidence 5777 33 789999999999984 666 34799999999999986 555 55 89999999999996 4454 4
Q ss_pred cCCCCC-------CeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176 180 GSLPGL-------KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228 (362)
Q Consensus 180 ~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 228 (362)
.. +| +.|++++|.++.. +... ..+++|+.|++++|.+.+..|..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l--~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHI-PENI--LSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp C----------CCEEEECCSSCCCCC-CGGG--GGSCTTEEEECCSSSCCHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceec-CHHH--hcCCCCCEEEeeCCcCCCcCHHH
Confidence 43 66 9999999999864 3322 45899999999999998765554
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.5e-18 Score=139.85 Aligned_cols=162 Identities=22% Similarity=0.263 Sum_probs=87.4
Q ss_pred CCCcccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCccccc
Q 044176 2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFG 75 (362)
Q Consensus 2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~ 75 (362)
+++.++ .+|.... ++++.|++++|+++.++.. .+++|+.|++++|.+.+.. +..+++|++|++++|.+..
T Consensus 15 ~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 15 YSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 456677 6776653 7899999999999988763 4567777777777665422 1224445555555555444
Q ss_pred CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176 76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL 155 (362)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 155 (362)
..+..|.++++|++|++++|+++ .++.. .+.. +++|++|++++|.+++..+..+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~-~~~~~------------------------~~~~-l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDG------------------------VFDK-LTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTT------------------------TTTT-CTTCCEEECCSSCCSCCCTTTT
T ss_pred cCHhHhcCccCCCEEEcCCCcCc-ccCHh------------------------Hhcc-CCcCCEEECCCCccceeCHHHh
Confidence 33333444555555555555444 23222 2222 2445555555555443333334
Q ss_pred hcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccc
Q 044176 156 ADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLC 200 (362)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 200 (362)
..+++|+.|++++|.+. +.+++|+.|++..|.+++..+
T Consensus 145 ~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred ccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence 44555555555555331 234445555555555554444
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=8.1e-18 Score=144.92 Aligned_cols=128 Identities=26% Similarity=0.356 Sum_probs=66.5
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (362)
+..+++|++|++++|.+. .++ .+..+ ++|++|++++|.+.+ ++. +.. +++|++|++++|.+++ . ..+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l-~~L~~L~L~~n~l~~-~~~-l~~-l~~L~~L~l~~n~l~~-~-~~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYL-PNVTKLFLNGNKLTD-IKP-LAN-LKNLGWLFLDENKVKD-L-SSLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCC-CGG-GTT-CTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcC-CCCCEEEccCCccCC-Ccc-ccc-CCCCCEEECCCCcCCC-C-hhhccCCC
Confidence 345666677777776665 443 24444 566666666666653 222 332 3566666666666553 2 23555555
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCccc
Confidence 66666655555432 2344555555555555554432 12234444555555444444
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.1e-17 Score=144.15 Aligned_cols=182 Identities=23% Similarity=0.349 Sum_probs=100.8
Q ss_pred EcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCC
Q 044176 25 DISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP 102 (362)
Q Consensus 25 ~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 102 (362)
.+..+.++++.. ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+..+ +.++++|++|++++|.++ .++
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~ 106 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS 106 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh
Confidence 344444444332 34455555555555554322 2225556666666666554322 566666666666666665 333
Q ss_pred CCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCC
Q 044176 103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSL 182 (362)
Q Consensus 103 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (362)
. +..+ ++|++|++++|.+.+ + ..+.. +++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+
T Consensus 107 ~-l~~l-~~L~~L~L~~n~i~~-~-~~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l 177 (291)
T 1h6t_A 107 S-LKDL-KKLKSLSLEHNGISD-I-NGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177 (291)
T ss_dssp G-GTTC-TTCCEEECTTSCCCC-C-GGGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred h-hccC-CCCCEEECCCCcCCC-C-hhhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence 2 4444 466666666666653 2 23333 35666666666666533 456666666666666666654433 5666
Q ss_pred CCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 183 PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 183 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
++|+.|++++|.+.+.. .+..+++|+.|++++|.+.
T Consensus 178 ~~L~~L~L~~N~i~~l~----~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCCEEECCSSCCCBCG----GGTTCTTCSEEEEEEEEEE
T ss_pred CccCEEECCCCcCCCCh----hhccCCCCCEEECcCCccc
Confidence 66666666666665421 2355666666666666665
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.5e-18 Score=163.43 Aligned_cols=188 Identities=22% Similarity=0.325 Sum_probs=132.9
Q ss_pred CCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 20 SLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 20 ~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
.+..+.++.+.++++.. ..+++|+.|++++|.+.... +..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 34445566666666554 45677777777777766532 3337778888888887775433 77888888888888888
Q ss_pred cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcch
Q 044176 98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS 177 (362)
Q Consensus 98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (362)
+ .++ .+..+ ++|++|++++|.+.. ++ .+.. +++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 100 ~-~l~-~l~~l-~~L~~L~Ls~N~l~~-l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 100 K-DLS-SLKDL-KKLKSLSLEHNGISD-IN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp C-CCT-TSTTC-TTCCEEECTTSCCCC-CG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred C-CCh-hhccC-CCCCEEEecCCCCCC-Cc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 7 444 45555 678888888888773 33 3444 37888888888888744 567788888888888888866555
Q ss_pred hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223 (362)
Q Consensus 178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 223 (362)
+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL----RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEEECCSEEEEC
T ss_pred -hccCCCCCEEECcCCCCCCC----hHHccCCCCCEEEccCCcCcC
Confidence 77788888888888877653 134677888888888888764
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.4e-17 Score=137.39 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=71.4
Q ss_pred ccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEec
Q 044176 63 TRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL 142 (362)
Q Consensus 63 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 142 (362)
++.|++++|.+....+..|..+++|++|++++|++++..|..+..+ ++|++|++++|.+. .+|...+..+++|++|++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-cCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence 3344444444443444455666666666666666653334444444 45666666666555 334333333356666666
Q ss_pred cCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcC
Q 044176 143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195 (362)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 195 (362)
++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666655555566666666666666666555444555555566666555554
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=7.1e-18 Score=149.95 Aligned_cols=172 Identities=22% Similarity=0.241 Sum_probs=102.7
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CC-CCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LV-PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
+.++++++.++.+|....+.++.|++++|.+++.. +. .+++|+.|++++|.+....+..|.++++|++|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 46777877777777665666777777777766432 22 466677777777776666556666677777777777776
Q ss_pred cccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh---hcCCCCcEEEccCCCCCC
Q 044176 98 SGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL---ADCTGLEVVNVGNNMIGD 173 (362)
Q Consensus 98 ~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~ 173 (362)
+ .++.. +..+ ++|++|++++|.+....|..+... ++|++|++++|.++...+..+ ..+++|+.|++++|.+..
T Consensus 101 ~-~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 101 H-TLDEFLFSDL-QALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp C-EECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred C-cCCHHHhCCC-cCCCEEECCCCcccEECHHHhCCc-ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 6 34333 3333 566666666666664334444433 666666666666664333333 345666666666666654
Q ss_pred CcchhccCCCC--CCeEEccCCcCC
Q 044176 174 TFPSWLGSLPG--LKILVLRSNRFY 196 (362)
Q Consensus 174 ~~~~~~~~~~~--L~~L~l~~n~~~ 196 (362)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444555544 255666655543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.2e-17 Score=136.21 Aligned_cols=149 Identities=26% Similarity=0.273 Sum_probs=129.0
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS 98 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 98 (362)
+.++++++.++.+|....++++.|++++|.+.+. .+..+++|+.|++++|.+....|..|.++++|++|++++|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 5789999999999887678899999999988854 3555899999999999999888999999999999999999999
Q ss_pred ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176 99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172 (362)
Q Consensus 99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (362)
.+|...+...++|++|++++|.+....|..+... ++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 94 -~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 94 -ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7777665544799999999999986666666654 89999999999999777778999999999999999874
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=4.1e-17 Score=134.51 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=56.8
Q ss_pred cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC
Q 044176 80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT 159 (362)
Q Consensus 80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 159 (362)
.|.++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..++
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCC-CCCCEEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCc
Confidence 35556666666666666552222233333 45555555555554332333332 25555555555555544444555555
Q ss_pred CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcC
Q 044176 160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195 (362)
Q Consensus 160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 195 (362)
+|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 555555555555444444454555555555554444
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=7.4e-17 Score=133.87 Aligned_cols=134 Identities=25% Similarity=0.285 Sum_probs=81.4
Q ss_pred CCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEE
Q 044176 61 PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSL 140 (362)
Q Consensus 61 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 140 (362)
++|++|++++|.+.+..+..|.++++|++|++++|+++ .++...+...++|++|++++|.++. ++......+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeE
Confidence 34444444455555455666667777777777777776 5554433322567777777776663 333332234667777
Q ss_pred eccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCC
Q 044176 141 GLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG 197 (362)
Q Consensus 141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 197 (362)
++++|.++ .+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|++..
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 77777766 556666667777777777776655555556666666677766666553
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3.1e-17 Score=135.24 Aligned_cols=149 Identities=25% Similarity=0.246 Sum_probs=125.3
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC----CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI----LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
+.++++++.++.+|....+.++.|++++|.+++.. +..+++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 57899999999988766777899999999888653 34589999999999999988778899999999999999999
Q ss_pred cccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176 98 SGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173 (362)
Q Consensus 98 ~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (362)
+ .++.. +..+ ++|++|++++|.+.+..|..+... ++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus 94 ~-~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 94 E-NVQHKMFKGL-ESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp C-CCCGGGGTTC-SSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred C-ccCHhHhcCC-cCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8 55554 5455 789999999999986667766654 899999999999997778899999999999999998743
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.6e-17 Score=154.12 Aligned_cols=128 Identities=24% Similarity=0.337 Sum_probs=78.6
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (362)
+..+++|+.|++++|.+. .++ .+..+ ++|+.|++++|.+.+. +. +.. +++|++|++++|.+.+ + ..+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l-~~L~~L~Ls~N~l~~~-~~-l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYL-PNVTKLFLNGNKLTDI-KP-LTN-LKNLGWLFLDENKIKD-L-SSLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGC-TTCCEEECTTSCCCCC-GG-GGG-CTTCCEEECCSSCCCC-C-TTSTTCTT
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccC-CCCCEEEeeCCCCCCC-hh-hcc-CCCCCEEECcCCCCCC-C-hhhccCCC
Confidence 456777888888888776 554 45555 6777777777777643 33 333 3677777777777663 2 25666666
Q ss_pred CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCC
T ss_pred CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCC
Confidence 77777766666442 3355666666666666665542 12345555666666555554
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=135.13 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=123.7
Q ss_pred cccccccCCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccc
Q 044176 30 FLTQIEQHPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNF 108 (362)
Q Consensus 30 ~i~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~ 108 (362)
....+....+++|+.|++++|.+.+.. +..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+
T Consensus 34 ~~~~i~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 34 STANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp TTCCCBHHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred ccccCChhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 344444456777888888888777522 334788888888888665 33578889999999999999986677777777
Q ss_pred cccccEEEcccccccCcchhhhhcCCCCccEEeccCCc-ccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCe
Q 044176 109 STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNK-LRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKI 187 (362)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 187 (362)
++|++|++++|.+.+..+..+... ++|++|++++|. ++ .++ .+..+++|+.|++++|.+.+.. .+..+++|++
T Consensus 112 -~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~ 185 (197)
T 4ezg_A 112 -TSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQ 185 (197)
T ss_dssp -TTCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCE
T ss_pred -CCCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCE
Confidence 789999999999986667777654 899999999998 65 444 6889999999999999986643 6788999999
Q ss_pred EEccCCcCCC
Q 044176 188 LVLRSNRFYG 197 (362)
Q Consensus 188 L~l~~n~~~~ 197 (362)
|++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999998753
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.9e-17 Score=132.35 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=124.6
Q ss_pred CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176 58 VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137 (362)
Q Consensus 58 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 137 (362)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+.+..+..+... ++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l-~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGL-SNLERLRIMGKDVTSDKIPNLSGL-TSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTC-TTCCEEEEECTTCBGGGSCCCTTC-TTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcC-CCCCEEEeECCccCcccChhhcCC-CCC
Confidence 34789999999999998 445 6889999999999999776 33 356666 789999999999986567776654 899
Q ss_pred cEEeccCCcccCCCchhhhcCCCCcEEEccCCC-CCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEec
Q 044176 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDL 216 (362)
Q Consensus 138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 216 (362)
++|++++|.+++..+..+..+++|+.|++++|. +.+. + .+..+++|++|++++|.+.+.. .+..+++|++|++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l 188 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYA 188 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEe
Confidence 999999999987778889999999999999998 6543 4 5888999999999999987633 3477899999999
Q ss_pred cCCccc
Q 044176 217 SHNEFT 222 (362)
Q Consensus 217 ~~n~~~ 222 (362)
++|.+.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 999876
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1e-16 Score=132.98 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=129.3
Q ss_pred CcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 21 LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 21 L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
-+.+++++++++.++....++|+.|++++|.+.+.. +..+++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 567999999999999887899999999999998754 45589999999999999877777789999999999999999
Q ss_pred cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176 98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173 (362)
Q Consensus 98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (362)
+ .++...+...++|++|++++|.+. .+|..+... ++|++|++++|.+++..+..+..+++|+.|++.+|.+..
T Consensus 101 ~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 101 T-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred C-ccChhHhCcchhhCeEeccCCccc-ccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9 666554433379999999999998 788888655 899999999999997666788999999999999998754
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.4e-17 Score=139.78 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=57.8
Q ss_pred CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcE
Q 044176 84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV 163 (362)
Q Consensus 84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (362)
+.++..++++++.++ .++ .+..+ ++|++|++++|.+. .++ .+.. +++|++|++++|.+++..+ +..+++|+.
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l-~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKEL-SGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHH-TTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhc-CcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 344445555555555 333 23333 45555666555554 333 2332 2555555555555553222 555555555
Q ss_pred EEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 164 VNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 164 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
|++++|.+.+. +. +.. ++|++|++++|.+.+.. .+..+++|++|++++|.+.
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCC
Confidence 55555555332 11 111 45555555555444321 1234445555555554444
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4.8e-17 Score=144.59 Aligned_cols=179 Identities=21% Similarity=0.142 Sum_probs=143.3
Q ss_pred CcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCccccc-CCCCCCEEEcccCcccccCCCCcccccccccEEEcccc
Q 044176 42 ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120 (362)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 120 (362)
-+.++++++.++.....-.+.++.|++++|.+....+..|. ++++|++|++++|++++..+..+..+ ++|++|++++|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-CCCCEEECCCC
Confidence 46889999988875544567799999999999988777787 89999999999999994334456666 79999999999
Q ss_pred cccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc---cCCCCCCeEEccCCcCCC
Q 044176 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL---GSLPGLKILVLRSNRFYG 197 (362)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~ 197 (362)
++....+..|. .+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99844344454 45899999999999997778899999999999999999977655555 578999999999999986
Q ss_pred ccccccccccCCc--ccEEeccCCcccCC
Q 044176 198 PLCEVNIMLPFEA--LRIIDLSHNEFTGF 224 (362)
Q Consensus 198 ~~~~~~~~~~~~~--L~~L~l~~n~~~~~ 224 (362)
..... +..++. ++.|++.+|.+.-.
T Consensus 178 l~~~~--~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 178 LPLTD--LQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCHHH--HHHSCHHHHTTEECCSSCEECC
T ss_pred cCHHH--hhhccHhhcceEEecCCCccCC
Confidence 54433 245565 48899999998743
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3e-17 Score=139.13 Aligned_cols=167 Identities=21% Similarity=0.263 Sum_probs=115.4
Q ss_pred CCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176 19 KSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN 96 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 96 (362)
+++..++++++.+++++. ..+++|+.|++++|.+.... +..+++|++|++++|.+.+..+ +.++++|++|++++|+
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 556677788888777764 46778888888888776533 2336777778887777775433 7778888888888888
Q ss_pred ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176 97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (362)
++ .++.... ++|++|++++|.+.+ ++ .+.. +++|++|++++|.+++. + .+..+++|+.|++++|.+.+.
T Consensus 97 l~-~l~~~~~---~~L~~L~L~~N~l~~-~~-~l~~-l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 97 LK-NLNGIPS---ACLSRLFLDNNELRD-TD-SLIH-LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CS-CCTTCCC---SSCCEEECCSSCCSB-SG-GGTT-CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred cC-CcCcccc---CcccEEEccCCccCC-Ch-hhcC-cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 87 4554332 578888888887763 33 3443 37778888887777743 3 567777777777777777654
Q ss_pred hhccCCCCCCeEEccCCcCCCc
Q 044176 177 SWLGSLPGLKILVLRSNRFYGP 198 (362)
Q Consensus 177 ~~~~~~~~L~~L~l~~n~~~~~ 198 (362)
..+..+++|+.|++++|++...
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 5566777777777777776543
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.7e-17 Score=145.57 Aligned_cols=280 Identities=17% Similarity=0.176 Sum_probs=168.7
Q ss_pred CCCCcEEEcCCCc----ccccccCCcCCCcEEEccCCcCC--CCCCCCCCCccEEEccCcccccCCcccccC--------
Q 044176 18 WKSLTYLDISNNF----LTQIEQHPWKNITVLNLQNNTIQ--GTILVPPPSTRAFLFSNNKLFGQIPPSIYS-------- 83 (362)
Q Consensus 18 ~~~L~~L~ls~~~----i~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------- 83 (362)
++++++|.++++- +..+. ..+++|+.||+++|.+. ......++.++.+.+..+.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~-~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLR-DEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHH-HSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHH-HhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccc
Confidence 3678888887641 11111 12677888888888877 22222234445555555543 3356677
Q ss_pred CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcc----cCCCchhhhcCC
Q 044176 84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL----RGSFPRYLADCT 159 (362)
Q Consensus 84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~l~ 159 (362)
+++|+++++.+ .++ .++...+...++|+.+++.++.+....+.+|.. +..+.++....... ......+|..+.
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcC-CCceEEecCcchhhhhcccccccccccccc
Confidence 88888888887 776 666655555467888888888776333444443 34566655544221 111223444555
Q ss_pred CCc-EEEccCCCCCCCcchhc----cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhh
Q 044176 160 GLE-VVNVGNNMIGDTFPSWL----GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE 234 (362)
Q Consensus 160 ~L~-~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 234 (362)
.|+ .+.+.... ..+..+ ....+++.+.+.++-... .... ....+++|+.+++.+|.+. .++...|..
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~-l~~~~~~L~~l~L~~n~i~-~I~~~aF~~-- 248 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNA-DFKL-IRDYMPNLVSLDISKTNAT-TIPDFTFAQ-- 248 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHH-HHHH-HHHHCTTCCEEECTTBCCC-EECTTTTTT--
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHH-HHHH-HHHhcCCCeEEECCCCCcc-eecHhhhhC--
Confidence 555 44443321 122111 123455555555431110 0000 0123677888888877776 444333333
Q ss_pred hhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCc-EEEccCCcCc
Q 044176 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLI-VLNLSHNGLT 313 (362)
Q Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~i~ 313 (362)
+++|+.+++.+| ++...+..|.++++|+ .+++.+ .++
T Consensus 249 ----------------------------------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 249 ----------------------------------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp ----------------------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred ----------------------------------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 566778888877 6656677788888998 999987 777
Q ss_pred cCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176 314 GSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354 (362)
Q Consensus 314 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 354 (362)
.+.+.+|.+|++|+.+++++|.++.+.+..|.++++|+.+.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 67778899999999999988888877777888888887663
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=5e-17 Score=156.82 Aligned_cols=163 Identities=24% Similarity=0.270 Sum_probs=78.7
Q ss_pred CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176 19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS 98 (362)
Q Consensus 19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 98 (362)
+.++.|++.++.+...+.. .++.++|+.+.+. .+++..|.+. ..+..+..++.|++|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA---LLQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcchhh---HhhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence 4456666666665554332 2344444444322 2333344444 45566777777777777777777
Q ss_pred ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176 99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178 (362)
Q Consensus 99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 178 (362)
.+|..++.+ ++|++|++++|.+. .+|..+..+ ++|++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..
T Consensus 238 -~l~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~ 311 (727)
T 4b8c_D 238 -NISANIFKY-DFLTRLYLNGNSLT-ELPAEIKNL-SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE 311 (727)
T ss_dssp -CCCGGGGGC-CSCSCCBCTTSCCS-CCCGGGGGG-TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred -CCChhhcCC-CCCCEEEeeCCcCc-ccChhhhCC-CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence 677766665 57777777777776 666666544 67777777777776 55666777777777777777764 44555
Q ss_pred ccCCCCCCeEEccCCcCCCccccc
Q 044176 179 LGSLPGLKILVLRSNRFYGPLCEV 202 (362)
Q Consensus 179 ~~~~~~L~~L~l~~n~~~~~~~~~ 202 (362)
++.+++|+.|+|++|.+.+..+..
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHHHHH
T ss_pred hhcCCCccEEeCCCCccCCCChHH
Confidence 666777777777777666544433
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.2e-18 Score=161.40 Aligned_cols=208 Identities=18% Similarity=0.134 Sum_probs=131.1
Q ss_pred cCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC
Q 044176 82 YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL 161 (362)
Q Consensus 82 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (362)
..+++|+.|++++|+++ .+|..++.+ ++|+.|++++|......|..... +...+..|..++.+++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~------------~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRA------------LDPLLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHH------------HCTGGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHh------------cccccCCHHHHHHHHhc
Confidence 45677788888888887 777777776 57777777655311011111000 00122334444445555
Q ss_pred cEEE-ccCCCCCCCcc-----hhcc--CCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhh
Q 044176 162 EVVN-VGNNMIGDTFP-----SWLG--SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233 (362)
Q Consensus 162 ~~L~-l~~~~~~~~~~-----~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 233 (362)
+.|+ ++.+.+..... ..+. ....|+.|++++|.+++. +. +..+++|+.|++++|.+. .+|..+ .
T Consensus 412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~---~~~l~~L~~L~Ls~N~l~-~lp~~~-~-- 483 (567)
T 1dce_A 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH---LEQLLLVTHLDLSHNRLR-ALPPAL-A-- 483 (567)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC---GGGGTTCCEEECCSSCCC-CCCGGG-G--
T ss_pred ccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC---ccccccCcEeecCccccc-ccchhh-h--
Confidence 5554 23222110000 0000 012477888888887763 32 467788888888888887 555431 1
Q ss_pred hhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc
Q 044176 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313 (362)
Q Consensus 234 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 313 (362)
.+++|+.|++++|.+++ +| .++.+++|+.|+|++|+++
T Consensus 484 ----------------------------------------~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 484 ----------------------------------------ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp ----------------------------------------GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred ----------------------------------------cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence 16778899999999985 55 7889999999999999999
Q ss_pred cCc-hhhhhcCCCcCEEEccCCcccccCchh---hhhhHhhhcc
Q 044176 314 GSI-PVSFANMIVLESLDLSSNKLHGRIPEQ---FVDAEICSSF 353 (362)
Q Consensus 314 ~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~l 353 (362)
+.. |..+..+++|+.|++++|++++..|.. +..+++|+.|
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 765 889999999999999999999654432 2335556555
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=5.6e-16 Score=135.92 Aligned_cols=216 Identities=15% Similarity=0.110 Sum_probs=151.6
Q ss_pred CCCCcEEEcCCCccc--ccccCCcCCCcEEEccCCcCCCCCCCC--------CCCccEEEccCcccccCCcccccCCCCC
Q 044176 18 WKSLTYLDISNNFLT--QIEQHPWKNITVLNLQNNTIQGTILVP--------PPSTRAFLFSNNKLFGQIPPSIYSLSSL 87 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~--~~~~~~~~~L~~L~l~~n~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L 87 (362)
+++|+.||+++|+|. ......++.++.+.+..+.+....+.+ +++|+.+++.+ .++.+.+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 578999999999999 444456666777888888888888888 89999999988 7877777889999999
Q ss_pred CEEEcccCcccccCCCCcccccccccEEEcccccc----c----------------------Ccchh-------------
Q 044176 88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYL----Q----------------------GRIPD------------- 128 (362)
Q Consensus 88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~----~----------------------~~~~~------------- 128 (362)
+++++.+|.+. .++...+....++..+....... . +.++.
T Consensus 127 ~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 99999999887 55554444333444444333110 0 00111
Q ss_pred --------------hhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCC-eEEccCC
Q 044176 129 --------------AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLK-ILVLRSN 193 (362)
Q Consensus 129 --------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n 193 (362)
.+...+++|+++++++|.++.....+|..+.+|+.+++.+| +......+|.++++|+ .+++..
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 11112467888888888887666677888888888888877 6555667788888888 888876
Q ss_pred cCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176 194 RFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 240 (362)
.++. ....+|..|++|+.+++..+.+. .++...|..+++|+.++
T Consensus 284 ~l~~--I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 SVTA--IEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCE--ECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred cceE--EchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 4443 22335678888888888888877 45555577777776654
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2e-15 Score=119.04 Aligned_cols=132 Identities=23% Similarity=0.220 Sum_probs=75.6
Q ss_pred CCccEEEccCcccc-cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccE
Q 044176 61 PSTRAFLFSNNKLF-GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS 139 (362)
Q Consensus 61 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 139 (362)
++|++|++++|.+. +.+|..+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+.+..|..+... ++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKL-PKLKKLELSENRIFGGLDMLAEKL-PNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCC-SSCCEEEEESCCCCSCCCHHHHHC-TTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccC-CCCCEEECcCCcCchHHHHHHhhC-CCCCE
Confidence 44555555555554 345555666667777777777666 33 444444 566666666666664444444433 56666
Q ss_pred EeccCCcccCCC-chhhhcCCCCcEEEccCCCCCCCcc---hhccCCCCCCeEEccCCcCC
Q 044176 140 LGLNSNKLRGSF-PRYLADCTGLEVVNVGNNMIGDTFP---SWLGSLPGLKILVLRSNRFY 196 (362)
Q Consensus 140 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~ 196 (362)
|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666665322 1455566666666666666544433 34555666666666665544
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=3.3e-15 Score=117.75 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=91.4
Q ss_pred CCCcEEEccCCCCC-CCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176 159 TGLEVVNVGNNMIG-DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237 (362)
Q Consensus 159 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 237 (362)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+... .
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~------ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLA-E------ 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHH-H------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHH-h------
Confidence 45566666666554 34444455666666666666666543 233566777777777777765444321 1
Q ss_pred hccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCc-chhhcCCCCCcEEEccCCcCccCc
Q 044176 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI-PQVLGDFKSLIVLNLSHNGLTGSI 316 (362)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~ 316 (362)
.+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..
T Consensus 93 ------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 93 ------------------------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp ------------------------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred ------------------------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 1567888888888887543 267788899999999999988554
Q ss_pred h---hhhhcCCCcCEEEccCCcccccCch
Q 044176 317 P---VSFANMIVLESLDLSSNKLHGRIPE 342 (362)
Q Consensus 317 ~---~~~~~~~~L~~L~l~~n~~~~~~~~ 342 (362)
+ ..+..+++|++|++++|.+.. +|+
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 137 DYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp THHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred HHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 4 478889999999999998873 443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=6.6e-18 Score=158.16 Aligned_cols=175 Identities=21% Similarity=0.174 Sum_probs=91.3
Q ss_pred cCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcC-------------CCCC---CCCCCCccEEE-ccCcccccCC
Q 044176 17 RWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTI-------------QGTI---LVPPPSTRAFL-FSNNKLFGQI 77 (362)
Q Consensus 17 ~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~-------------~~~~---~~~~~~L~~L~-l~~~~~~~~~ 77 (362)
..++|+.|++++|+++.+|. ..+++|+.|++++|.. .+.. +..+++|+.|+ ++.+.+....
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 35899999999999998887 5788999999877631 1110 11134444444 2222211000
Q ss_pred cc-----cccC--CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCC
Q 044176 78 PP-----SIYS--LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGS 150 (362)
Q Consensus 78 ~~-----~~~~--l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 150 (362)
.- .+.. ...|+.|++++|.++ .+|. +..+ ++|+.|++++|.++ .+|..+... ++|++|++++|.+++
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQL-LLVTHLDLSHNRLR-ALPPALAAL-RCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGC-TTCCEEECCSSCCCC-
T ss_pred hhhhhcccccccCccCceEEEecCCCCC-CCcC-cccc-ccCcEeecCccccc-ccchhhhcC-CCCCEEECCCCCCCC-
Confidence 00 0000 113555555555555 3443 4444 45555555555555 445544433 555555555555553
Q ss_pred CchhhhcCCCCcEEEccCCCCCCCc-chhccCCCCCCeEEccCCcCCCc
Q 044176 151 FPRYLADCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYGP 198 (362)
Q Consensus 151 ~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 198 (362)
+| .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 33 4555555555555555554443 45555555555555555555443
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=9.6e-15 Score=117.63 Aligned_cols=126 Identities=23% Similarity=0.242 Sum_probs=74.3
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCC----CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTIL----VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
+.+++++++++.++.....+++.|++++|.+.+... ..+++|++|++++|.+.+..|..|.++++|++|++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 577888888887777655677777777777664332 2356666666666666655556666666666666666666
Q ss_pred cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC
Q 044176 98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG 149 (362)
Q Consensus 98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 149 (362)
++..+..+..+ ++|++|++++|++.+..|..+... ++|++|++++|++.+
T Consensus 91 ~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 91 KEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHL-NSLTSLNLASNPFNC 140 (192)
T ss_dssp CEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTC-TTCCEEECTTCCBCC
T ss_pred CccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcC-CCCCEEEeCCCCccC
Confidence 53333333333 456666666665554444444332 555555555555543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.1e-14 Score=117.20 Aligned_cols=133 Identities=23% Similarity=0.227 Sum_probs=87.3
Q ss_pred CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176 88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG 167 (362)
Q Consensus 88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (362)
++++++++.++ .+|..+. .++++|++++|.+....+..+...+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56667777666 6666443 2567777777776633333222233677777777777776666677777777777777
Q ss_pred CCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCc
Q 044176 168 NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP 226 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 226 (362)
+|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCc
Confidence 777766666667777777777777777766544433 566777777777777765544
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=4.3e-15 Score=114.58 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCccEEEccCcccc-cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccE
Q 044176 61 PSTRAFLFSNNKLF-GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS 139 (362)
Q Consensus 61 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 139 (362)
+++++|++++|.+. +.+|..+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+.+.+|..+... ++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKL-NKLKKLELSDNRVSGGLEVLAEKC-PNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCCCC-TTCCEEECCSSCCCSCTHHHHHHC-TTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhhcC-CCCCEEECCCCcccchHHHHhhhC-CCCCE
Confidence 44555555555554 445556666777777777777666 33 444444 566666666666664455544433 56666
Q ss_pred EeccCCcccCC-CchhhhcCCCCcEEEccCCCCCCCcc---hhccCCCCCCeEEcc
Q 044176 140 LGLNSNKLRGS-FPRYLADCTGLEVVNVGNNMIGDTFP---SWLGSLPGLKILVLR 191 (362)
Q Consensus 140 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 191 (362)
|++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666532 12455556666666666665544333 344555555555543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=8.5e-15 Score=112.90 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=33.0
Q ss_pred cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC-chhhhhcCCCcCEEEccCCcccccCc---hhhhhhHhhhc
Q 044176 277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS-IPVSFANMIVLESLDLSSNKLHGRIP---EQFVDAEICSS 352 (362)
Q Consensus 277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~ 352 (362)
+|+.|++++|.+++.+|..+..+++|+.|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 344444444444433333333444444444444444421 12344444455555555554443322 23444444444
Q ss_pred c
Q 044176 353 F 353 (362)
Q Consensus 353 l 353 (362)
|
T Consensus 145 L 145 (149)
T 2je0_A 145 L 145 (149)
T ss_dssp E
T ss_pred c
Confidence 4
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=5.9e-14 Score=125.84 Aligned_cols=268 Identities=10% Similarity=0.139 Sum_probs=170.3
Q ss_pred ccccCCCCcEEEcCCCcccccccCCc--CCCcEEEccCC--cCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCE
Q 044176 14 DSQRWKSLTYLDISNNFLTQIEQHPW--KNITVLNLQNN--TIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEY 89 (362)
Q Consensus 14 ~~~~~~~L~~L~ls~~~i~~~~~~~~--~~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 89 (362)
++..+..++.+.+.++ ++.++...| .+|+.+.+..+ .|....+.. .+|+.+.+.. .+..+...+|.++++|+.
T Consensus 108 ~~~~~~~l~~i~ip~~-i~~I~~~aF~~~~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 108 LTEILKGYNEIILPNS-VKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EEEECSSCSEEECCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EEEecCCccEEEECCc-cCEehHhhcccCCccEEEeCCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3444577777777664 666665333 35777777655 222344444 3688888875 566566678888899999
Q ss_pred EEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCC
Q 044176 90 ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169 (362)
Q Consensus 90 L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (362)
+++.+|.++ .++...+.. .+|+.+.+..+ +. .++...+..+++|+.+.+..+ ++.....+|.. ..|+.+.+.+
T Consensus 185 l~l~~n~l~-~I~~~aF~~-~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFVY-AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp EECTTSCCS-EECTTTTTT-CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred eecCCCcce-EechhhEee-cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-
Confidence 999888888 777776665 68888888744 54 344433334478888888765 44344556666 6788888843
Q ss_pred CCCCCcchhccCCCCCCeEEccCCcCCCc---cccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCc
Q 044176 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGP---LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG 246 (362)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~ 246 (362)
.++.....+|.++++|+.+.+.++..... .....+|..|++|+.+++.. .+. .++...|..
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~-------------- 321 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGG-------------- 321 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTT--------------
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcC--------------
Confidence 34445556778888888888877655311 12223456677777777663 233 222222222
Q ss_pred ccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCC-C
Q 044176 247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-V 325 (362)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~ 325 (362)
+++|+.+++..+ ++......|.++ +|+.+++.+|.+.......|..++ .
T Consensus 322 ----------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 322 ----------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDD 371 (401)
T ss_dssp ----------------------------CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTT
T ss_pred ----------------------------CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCC
Confidence 556777777544 554556677777 888888888877766666677774 6
Q ss_pred cCEEEccCCccc
Q 044176 326 LESLDLSSNKLH 337 (362)
Q Consensus 326 L~~L~l~~n~~~ 337 (362)
++.|.+..+.+.
T Consensus 372 l~~l~vp~~~~~ 383 (401)
T 4fdw_A 372 ITVIRVPAESVE 383 (401)
T ss_dssp CCEEEECGGGHH
T ss_pred ccEEEeCHHHHH
Confidence 777777766544
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=1.6e-15 Score=146.39 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=100.3
Q ss_pred CCCccEEEccCcccccCCcccccCCCCCCE-----EEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCC
Q 044176 60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEY-----ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS 134 (362)
Q Consensus 60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-----L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 134 (362)
.+.++.+++.++.+.. .+..+.....|.. ++++.+.+. ..+..+..+ +.|+.|++++|.+. .+|..+...
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l-~~L~~L~Ls~n~l~-~l~~~~~~l- 246 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDD-QLWHALDLSNLQIF-NISANIFKY- 246 (727)
T ss_dssp ----------------------------------------------------CC-CCCCEEECTTSCCS-CCCGGGGGC-
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccC-CCCcEEECCCCCCC-CCChhhcCC-
Confidence 3456667776666653 2333222222222 333444444 345555555 78999999999998 788777754
Q ss_pred CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEE
Q 044176 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII 214 (362)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 214 (362)
++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+|..++.+++|++|+|++|.+.. .+.. +..+++|++|
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~--~~~l~~L~~L 321 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWE--FGNLCNLQFL 321 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSS--TTSCTTCCCE
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChh--hhcCCCccEE
Confidence 89999999999999 78889999999999999999997 668889999999999999999874 3433 4889999999
Q ss_pred eccCCcccCCCchhH
Q 044176 215 DLSHNEFTGFLPRWI 229 (362)
Q Consensus 215 ~l~~n~~~~~~~~~~ 229 (362)
++++|.+.+..+..+
T Consensus 322 ~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 322 GVEGNPLEKQFLKIL 336 (727)
T ss_dssp ECTTSCCCSHHHHHH
T ss_pred eCCCCccCCCChHHH
Confidence 999999997766553
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=5.4e-14 Score=113.23 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196 (362)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (362)
++|++|++++|.+++..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 44444444444444444444555555555555555554443444555555555555555543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.1e-13 Score=111.51 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=112.4
Q ss_pred CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176 88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG 167 (362)
Q Consensus 88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (362)
++++++++.++ .+|..+. +++++|++++|.++ .+|..+... ++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 57899999998 8887653 57999999999998 678777654 899999999999997777889999999999999
Q ss_pred CCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCc
Q 044176 168 NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP 226 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 226 (362)
+|.++...+..+..+++|++|++++|.+....... +..+++|+.|++++|.+.....
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh--hhcCccccEEEeCCCCeecCCc
Confidence 99998888888999999999999999998654443 4778999999999999875444
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.6e-13 Score=109.01 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=17.4
Q ss_pred hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196 (362)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (362)
+..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 333444444444444443333333344444444444444443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.6e-13 Score=109.05 Aligned_cols=127 Identities=26% Similarity=0.330 Sum_probs=62.9
Q ss_pred cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176 22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI 101 (362)
Q Consensus 22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 101 (362)
+.+++++++++.++....++|+.|++++|.+.+ ..+..|..+++|++|++++|.++ .+
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~---------------------~~~~~~~~l~~L~~L~l~~n~l~-~~ 67 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---------------------LPHGVFDKLTQLTKLSLSQNQIQ-SL 67 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC---------------------CCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccE---------------------eCHHHhcCcccccEEECCCCcce-Ee
Confidence 456666666666665555566666666555543 33333444555555555555554 33
Q ss_pred CCCc-ccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176 102 PPCL-GNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172 (362)
Q Consensus 102 ~~~l-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (362)
+... ..+ ++|++|++++|.+++ +|......+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 68 ~~~~~~~l-~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 68 PDGVFDKL-TKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHccCC-CccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 3322 222 445555555555542 22222122245555555555555333334445555555555555553
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=2.8e-13 Score=121.43 Aligned_cols=79 Identities=9% Similarity=0.057 Sum_probs=61.6
Q ss_pred hcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhH-hhhc
Q 044176 274 IITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAE-ICSS 352 (362)
Q Consensus 274 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~ 352 (362)
.+++|+.+++.+ .++......|.++++|+.++|..+ ++.+...+|.+| +|+.+++.+|......+..|..++ .+..
T Consensus 298 ~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence 378899999984 476566778999999999999654 666777889999 999999999988866666777764 4444
Q ss_pred cCC
Q 044176 353 FAR 355 (362)
Q Consensus 353 l~~ 355 (362)
+.+
T Consensus 375 l~v 377 (401)
T 4fdw_A 375 IRV 377 (401)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.4e-13 Score=109.20 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=78.8
Q ss_pred CCCCcEEEcCCCccccccc-CC-cCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176 18 WKSLTYLDISNNFLTQIEQ-HP-WKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN 95 (362)
Q Consensus 18 ~~~L~~L~ls~~~i~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 95 (362)
+++|+.|++++|.++.++. .. .++|+.|++++|. +.+. ..+..+++|++|++++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~---------------------l~~~--~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---------------------IRKL--DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC---------------------CCEE--CCCCCCSSCCEEECCSS
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC---------------------CCcc--cccccCCCCCEEECCCC
Confidence 4667777777776666543 12 2255555555554 4433 45666777777777777
Q ss_pred cccccCCCCc-ccccccccEEEcccccccCcchh--hhhcCCCCccEEeccCCcccCCCch----hhhcCCCCcEEEccC
Q 044176 96 NLSGTIPPCL-GNFSTQLTILHLNNNYLQGRIPD--AFANGSCDLRSLGLNSNKLRGSFPR----YLADCTGLEVVNVGN 168 (362)
Q Consensus 96 ~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~ 168 (362)
.++ .+|..+ ..+ ++|++|++++|.+. .+|. .+.. +++|++|++++|.++ ..+. .+..+++|+.|++++
T Consensus 75 ~l~-~~~~~~~~~l-~~L~~L~L~~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 75 RIC-RIGEGLDQAL-PDLTELILTNNSLV-ELGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCC-EECSCHHHHC-TTCCEEECCSCCCC-CGGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred ccc-ccCcchhhcC-CCCCEEECCCCcCC-cchhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 776 555554 334 57777777777775 4454 4443 367777888777776 3344 377778888888877
Q ss_pred CCC
Q 044176 169 NMI 171 (362)
Q Consensus 169 ~~~ 171 (362)
|..
T Consensus 150 n~~ 152 (176)
T 1a9n_A 150 VKL 152 (176)
T ss_dssp CCH
T ss_pred CCH
Confidence 765
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=5.5e-13 Score=119.82 Aligned_cols=309 Identities=16% Similarity=0.130 Sum_probs=153.9
Q ss_pred ccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCC--cCCCCCCCCCCCccEEEccCcccccCCccc
Q 044176 6 IRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNN--TIQGTILVPPPSTRAFLFSNNKLFGQIPPS 80 (362)
Q Consensus 6 ~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 80 (362)
++ .|...+|..+.+|+.+.+..+ ++.++.. .+.+|+.+++..+ .+....+..++.|+.+.+..+ +......+
T Consensus 59 Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VV-SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EE-EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred Ee-EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeeccee
Confidence 55 678888988899999999754 8888774 4577999998755 233455666777776665433 22223333
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (362)
|.++.......... .. .+....+....+|+.+.+..+.. .++...+..+.+|+.+.+..+ ++.....+|..+..
T Consensus 136 F~~~~~~~~~~~~~--~~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VT-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTCCCSEEECCTT--CC-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eecccccccccCcc--cc-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 44333222221111 11 11122222223455555543321 122222222244555554443 22122334444444
Q ss_pred CcEEEccCCCC---------------------CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176 161 LEVVNVGNNMI---------------------GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN 219 (362)
Q Consensus 161 L~~L~l~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 219 (362)
|+.+.+..+.. +.....++..+..++.+.+..+... ....++..+..++.+.....
T Consensus 210 L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~---i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 210 LENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR---IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE---ECSCTTTTCTTCCEEEECSS
T ss_pred cceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce---eeccccccccccceeccCce
Confidence 44444333221 1112233444445555554433111 11122344444444444333
Q ss_pred cccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCC
Q 044176 220 EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF 299 (362)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 299 (362)
.+. ...+..+.+|+.+.+... ........+..+.+|+.+++.++ ++.....+|.++
T Consensus 287 ~i~----~~~F~~~~~L~~i~l~~~-------------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 287 IVP----EKTFYGCSSLTEVKLLDS-------------------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp EEC----TTTTTTCTTCCEEEECTT-------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred eec----cccccccccccccccccc-------------------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 221 222344444444433221 11111222334677888888644 554556677888
Q ss_pred CCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhcc
Q 044176 300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF 353 (362)
Q Consensus 300 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l 353 (362)
++|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++ .+..+|.+++.|+.+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 88888888765 65566677888888888888754 22 233456666666543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2.2e-13 Score=108.02 Aligned_cols=136 Identities=17% Similarity=0.200 Sum_probs=77.5
Q ss_pred ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176 81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160 (362)
Q Consensus 81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (362)
+.++.+|++|++++|.++ .++ .+....++|++|++++|.+.+ + ..+.. +++|++|++++|.+++..+..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPL-LRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCC-CSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCc-c-ccccc-CCCCCEEECCCCcccccCcchhhcCCC
Confidence 445566666666666665 443 233432356666666666653 2 23332 356666666666666443344466667
Q ss_pred CcEEEccCCCCCCCcch--hccCCCCCCeEEccCCcCCCcccc-ccccccCCcccEEeccCCccc
Q 044176 161 LEVVNVGNNMIGDTFPS--WLGSLPGLKILVLRSNRFYGPLCE-VNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 161 L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~ 222 (362)
|+.|++++|.+.+ .+. .+..+++|+.|++++|++...... ...+..+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777766633 333 566677777777777766543221 012356677777777776654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=3e-15 Score=121.31 Aligned_cols=136 Identities=24% Similarity=0.330 Sum_probs=97.0
Q ss_pred cccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhc
Q 044176 78 PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD 157 (362)
Q Consensus 78 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 157 (362)
|..+..+++|++|++++|.++ .+| .+..+ ++|++|++++|.+. .+|..+... ++|++|++++|.+++ ++ .+..
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l-~~L~~L~l~~n~l~-~l~~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIE-KIS-SLSGM-ENLRILSLGRNLIK-KIENLDAVA-DTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEES-CCC-CHHHH-TTCCEEEEEEEEEC-SCSSHHHHH-HHCSEEEEEEEECCC-HH-HHHH
T ss_pred hHHHhcCCCCCEEECCCCCCc-ccc-ccccC-CCCCEEECCCCCcc-cccchhhcC-CcCCEEECcCCcCCc-CC-cccc
Confidence 347788888888888888887 566 66666 68888888888887 566655543 678888888888874 34 6777
Q ss_pred CCCCcEEEccCCCCCCCcc-hhccCCCCCCeEEccCCcCCCcccc--------ccccccCCcccEEeccCCccc
Q 044176 158 CTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILVLRSNRFYGPLCE--------VNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~~~L~~L~l~~n~~~ 222 (362)
+++|+.|++++|.+.+... ..+..+++|++|++++|.+.+..+. ...+..+++|+.|+ ++.+.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888888765432 4677888888888888877654332 11246677888876 45544
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=8.3e-15 Score=130.10 Aligned_cols=113 Identities=17% Similarity=0.054 Sum_probs=59.8
Q ss_pred ccccEEEcccccccCcchhhhhcC----CCCccEEeccCCcccCCCchhh-hcCCCCcEEEccCCCCCCCcchhc-----
Q 044176 110 TQLTILHLNNNYLQGRIPDAFANG----SCDLRSLGLNSNKLRGSFPRYL-ADCTGLEVVNVGNNMIGDTFPSWL----- 179 (362)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~----- 179 (362)
+.|+.|++++|.++......+... .+.|++|++++|.++......+ ..+++|+.|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 457777777777653322222221 1367777777776653322222 234566777777776654433332
Q ss_pred cCCCCCCeEEccCCcCCCcccccc--ccccCCcccEEeccCCccc
Q 044176 180 GSLPGLKILVLRSNRFYGPLCEVN--IMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 180 ~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~ 222 (362)
...++|++|++++|.+++.....+ ++..+++|++|++++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 234566666666666543221111 2244556666666666655
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=6.5e-15 Score=119.32 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=98.6
Q ss_pred CCccEEeccCCcccCCCch------hhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccC
Q 044176 135 CDLRSLGLNSNKLRGSFPR------YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPF 208 (362)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 208 (362)
..++.++++.+.+.+..+. .+..++.|+.|++++|.+.+ ++ .+..+++|++|++++|.+... +.. +..+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~--~~~~ 92 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENL--DAVA 92 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSH--HHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cch--hhcC
Confidence 4566666666665554444 77778888888888887755 44 566777788888887777642 222 2445
Q ss_pred CcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCccc
Q 044176 209 EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288 (362)
Q Consensus 209 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 288 (362)
++|++|++++|.+.+ .+ . +. .+++|+.|++++|.+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~-~~------------------------------------------~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-G-IE------------------------------------------KLVNLRVLYMSNNKI 127 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-H-HH------------------------------------------HHHHSSEEEESEEEC
T ss_pred CcCCEEECcCCcCCc-CC-c-cc------------------------------------------cCCCCCEEECCCCcC
Confidence 677777777777663 22 1 11 156677888888887
Q ss_pred CCCcc-hhhcCCCCCcEEEccCCcCccCchh----------hhhcCCCcCEEEccCCcccc
Q 044176 289 QGEIP-QVLGDFKSLIVLNLSHNGLTGSIPV----------SFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 289 ~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~~~~~~~L~~L~l~~n~~~~ 338 (362)
++..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.|| ++.++.
T Consensus 128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 74332 4567778888888888877654333 267778888776 666653
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.39 E-value=4.9e-12 Score=113.65 Aligned_cols=286 Identities=14% Similarity=0.110 Sum_probs=173.8
Q ss_pred cccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCC--c----------------------CCCCCC
Q 044176 5 RIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNN--T----------------------IQGTIL 57 (362)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n--~----------------------~~~~~~ 57 (362)
.++ .|+..+|..+++|+.+++..+ ++.++.. .+..|+.+.+..+ . +....+
T Consensus 81 ~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF 158 (394)
T 4fs7_A 81 TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAF 158 (394)
T ss_dssp TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhh
Confidence 466 788889999999999999765 6666653 3445555544332 1 112233
Q ss_pred CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176 58 VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137 (362)
Q Consensus 58 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 137 (362)
..+++|+.+.+.++. ..+...+|.++.+|+.+.+..+ ++ .++...+.....|+.+.+..+... +....... ..|
T Consensus 159 ~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~-~~l 232 (394)
T 4fs7_A 159 ATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSK-TGV 232 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT-CCC
T ss_pred cccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhccc-CCC
Confidence 445566666665432 2234455666666666665544 32 333333332244555544443221 22222222 467
Q ss_pred cEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEecc
Q 044176 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLS 217 (362)
Q Consensus 138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 217 (362)
+.+.+.... +.....++..+..++.+.+..+.. ......+..+..++.+......+ ...++..+.+|+.+.+.
T Consensus 233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i-----~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV-----PEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE-----CTTTTTTCTTCCEEEEC
T ss_pred ceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee-----ccccccccccccccccc
Confidence 777665442 223345677888899998877643 34455677888888887765432 22345778889998886
Q ss_pred CCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhc
Q 044176 218 HNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297 (362)
Q Consensus 218 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 297 (362)
.+ +. .++...|..+.+|+.+.+...- .......+..+.+|+.+++..+ ++.....+|.
T Consensus 306 ~~-i~-~I~~~aF~~c~~L~~i~lp~~v-------------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 306 DS-VK-FIGEEAFESCTSLVSIDLPYLV-------------------EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TT-CC-EECTTTTTTCTTCCEECCCTTC-------------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred cc-cc-eechhhhcCCCCCCEEEeCCcc-------------------cEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 54 33 4455557888888887765431 1111222334789999999876 6656677899
Q ss_pred CCCCCcEEEccCCcCccCchhhhhcCCCcCEE
Q 044176 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESL 329 (362)
Q Consensus 298 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 329 (362)
++++|+.+++..+ +. ....+|.+|++|+.+
T Consensus 364 ~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 364 GCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999999755 33 345679999988875
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=9.1e-14 Score=123.40 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=72.9
Q ss_pred CCCCCEEEcccCcccccCCCCccc----ccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhh---
Q 044176 84 LSSLEYISLSHNNLSGTIPPCLGN----FSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLA--- 156 (362)
Q Consensus 84 l~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--- 156 (362)
++.|++|++++|.++......+.. ..++|++|++++|.+.......+...+++|++|++++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356667777777665321111111 1135777777777665433344443345677777777766543333332
Q ss_pred --cCCCCcEEEccCCCCCCC----cchhccCCCCCCeEEccCCcCCCccccc--cccccCCcccEEeccCCccc
Q 044176 157 --DCTGLEVVNVGNNMIGDT----FPSWLGSLPGLKILVLRSNRFYGPLCEV--NIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 157 --~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~ 222 (362)
..+.|+.|++++|.+++. ++..+...++|++|++++|.+.+..... .++..+++|++|++++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 346677777777766432 2233455666777777777665322111 12233445555555555554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=9e-12 Score=97.98 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=54.0
Q ss_pred CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176 88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG 167 (362)
Q Consensus 88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (362)
++++++++.++ .+|..+. +++++|++++|.+.+..|..+... ++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45566666665 4554442 345555665555553333333332 555555555555554444445555555555555
Q ss_pred CCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176 168 NNMIGDTFPSWLGSLPGLKILVLRSNRFY 196 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (362)
+|.+.+..+..+..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55554444444555555555555555443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1.2e-11 Score=97.34 Aligned_cols=106 Identities=28% Similarity=0.275 Sum_probs=57.0
Q ss_pred CcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccccc
Q 044176 21 LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT 100 (362)
Q Consensus 21 L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 100 (362)
.+.++++++.++.++....++++.|++++|.++ +..|..|.++++|++|++++|+++ .
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~ 68 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQIT---------------------KLEPGVFDRLTQLTRLDLDNNQLT-V 68 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC---------------------CCCTTTTTTCTTCSEEECCSSCCC-C
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCC---------------------ccChhhhcCcccCCEEECCCCCcC-c
Confidence 355666666666666544455555555555544 444555556666666666666665 4
Q ss_pred CCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC
Q 044176 101 IPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG 149 (362)
Q Consensus 101 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 149 (362)
++...+...++|++|++++|++.. +|......+++|++|++++|++..
T Consensus 69 l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence 444332222456666666666653 333222223566666666666553
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.7e-11 Score=96.77 Aligned_cols=104 Identities=23% Similarity=0.284 Sum_probs=55.8
Q ss_pred CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176 88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG 167 (362)
Q Consensus 88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (362)
+.++++++.++ .+|..+. ++|++|++++|.+.+..|..+... ++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 45666666665 5555442 356666666666654334444332 556666666666554433444555566666666
Q ss_pred CCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176 168 NNMIGDTFPSWLGSLPGLKILVLRSNRFY 196 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 196 (362)
+|.+.+..+..+..+++|++|++++|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55554443334555555555555555544
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=2.5e-11 Score=95.78 Aligned_cols=85 Identities=27% Similarity=0.326 Sum_probs=40.0
Q ss_pred CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176 62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141 (362)
Q Consensus 62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 141 (362)
+|++|++++|.+.+..|..|.++++|++|+|++|+++ .+|...+...++|++|++++|.+. .+|......+++|++|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEE
Confidence 3344444444444444555555566666666666555 444433221245555555555554 23332222224555555
Q ss_pred ccCCccc
Q 044176 142 LNSNKLR 148 (362)
Q Consensus 142 l~~~~~~ 148 (362)
+++|++.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 5555544
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=2.7e-10 Score=102.21 Aligned_cols=312 Identities=10% Similarity=0.134 Sum_probs=188.6
Q ss_pred ccccCCccccccCC-CCcEEEcCCCcccccccC---CcCCCcEEEccCCc------CCCCCCCCCCCccEEEccCccccc
Q 044176 6 IRGRISKSDSQRWK-SLTYLDISNNFLTQIEQH---PWKNITVLNLQNNT------IQGTILVPPPSTRAFLFSNNKLFG 75 (362)
Q Consensus 6 ~~~~~~~~~~~~~~-~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~------~~~~~~~~~~~L~~L~l~~~~~~~ 75 (362)
++ .|+..+|..+. .|+.+.+-.+ ++.++.. .+.+|+.+.+..+. |....+..+.+|+.+.+..+ +..
T Consensus 51 Vt-~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VS-KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EE-EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred ee-EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 55 68888888764 5999999765 7877774 45789999887652 33456777888888877654 444
Q ss_pred CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176 76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL 155 (362)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 155 (362)
+...+|..+.+|+.+.+..+ +. .++...+.....|+.+.+..+ +......+| .. ..|+.+.+..+... ....++
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~-~~l~~i~ip~~~~~-i~~~af 201 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TG-TALTQIHIPAKVTR-IGTNAF 201 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTT-TT-CCCSEEEECTTCCE-ECTTTT
T ss_pred ehhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccc-cc-cceeEEEECCcccc-cccchh
Confidence 56678888999999998754 33 455555554467888888655 332223334 33 57888887765332 445567
Q ss_pred hcCCCCcEEEccCCCCCCCcchhc-------------cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176 156 ADCTGLEVVNVGNNMIGDTFPSWL-------------GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222 (362)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 222 (362)
..+..+.................+ .....+..+.+... +. .....+|..+..|+.+.+..+..
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~--~i~~~aF~~c~~L~~i~lp~~~~- 277 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA--RIETHAFDSCAYLASVKMPDSVV- 277 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE--EECTTTTTTCSSCCEEECCTTCC-
T ss_pred hhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce--EcccceeeecccccEEecccccc-
Confidence 777777777665443211100000 11122333333211 11 11223566777788877754432
Q ss_pred CCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCC
Q 044176 223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSL 302 (362)
Q Consensus 223 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 302 (362)
.+....+..+..|+.+.+...- .......+..+.+|+.+++.++ ++.....+|.++++|
T Consensus 278 -~I~~~aF~~c~~L~~i~l~~~i-------------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 278 -SIGTGAFMNCPALQDIEFSSRI-------------------TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp -EECTTTTTTCTTCCEEECCTTC-------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred -eecCcccccccccccccCCCcc-------------------cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 2334446666666666553221 1111122334778888988754 554556678899999
Q ss_pred cEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCC
Q 044176 303 IVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFAR 355 (362)
Q Consensus 303 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~ 355 (362)
+++.|..+ ++.+...+|.+|++|+.+++.++.... ..+.....|+.+.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 99999654 665777889999999999999876542 34555555665543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.13 E-value=4.8e-09 Score=94.06 Aligned_cols=294 Identities=12% Similarity=0.092 Sum_probs=188.8
Q ss_pred ccccccCCcC----CCcEEEccCC--cCCCCCCCCCCCccEEEccCcc---cccCCcccccCCCCCCEEEcccCcccccC
Q 044176 31 LTQIEQHPWK----NITVLNLQNN--TIQGTILVPPPSTRAFLFSNNK---LFGQIPPSIYSLSSLEYISLSHNNLSGTI 101 (362)
Q Consensus 31 i~~~~~~~~~----~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 101 (362)
++.++..+|. .|+.+.+..+ .|....+..+.+|+.+.+..+. ++.+...+|..+.+|+.+.+..+ ++ .+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EE
T ss_pred eeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-ee
Confidence 5666665553 4899998764 4556778889999999998763 55566678999999999887654 44 45
Q ss_pred CCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccC
Q 044176 102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGS 181 (362)
Q Consensus 102 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 181 (362)
+...+....+|+.+.+.... . .++...+..+..|+.+.+..+ ++.....+|. ...|+.+.+..+.. .....++..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTT
T ss_pred hhhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhh
Confidence 55555544789999997543 3 344433334478999998775 3323344554 46799999876543 344566888
Q ss_pred CCCCCeEEccCCcCCCcccccc-----------ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCccccc
Q 044176 182 LPGLKILVLRSNRFYGPLCEVN-----------IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQ 250 (362)
Q Consensus 182 ~~~L~~L~l~~n~~~~~~~~~~-----------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 250 (362)
+.++.................. .......+..+.+.. .+. .+....|..+..++.+.+.....
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~---- 277 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVV---- 277 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCC----
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEecccccc----
Confidence 8888888776543321111000 011112233333321 111 22233466666666665543221
Q ss_pred CCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEE
Q 044176 251 GEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLD 330 (362)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 330 (362)
......+..+++|+.+.+. +.++......|.++.+|+.+.|..+ ++.+...+|.+|++|+.+.
T Consensus 278 ---------------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 278 ---------------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp ---------------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ---------------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 1112223347889999996 4455456678899999999999754 6656678899999999999
Q ss_pred ccCCcccccCchhhhhhHhhhccCC
Q 044176 331 LSSNKLHGRIPEQFVDAEICSSFAR 355 (362)
Q Consensus 331 l~~n~~~~~~~~~~~~l~~L~~l~~ 355 (362)
+..+ ++.+...+|.++.+|+.+..
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 9765 66566678999998888743
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.2e-09 Score=96.25 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=82.7
Q ss_pred CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhcc--CCCCCCeEEccCC--cCCCcc-c----ccccc
Q 044176 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG--SLPGLKILVLRSN--RFYGPL-C----EVNIM 205 (362)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n--~~~~~~-~----~~~~~ 205 (362)
|+|+.|.++++.-. ..+. + ..++|+.|++..+.+.......+. .+|+|++|+|+.+ ...+.. . .....
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 66666666665211 1121 2 256677777666655433333332 5667777766421 111100 0 01111
Q ss_pred ccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccC
Q 044176 206 LPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSS 285 (362)
Q Consensus 206 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (362)
..+++|++|++.+|.+....+..++.. ..++.|+.|+++.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------------------------------~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLES----------------------------------------DILPQLETMDISA 288 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHC----------------------------------------SSGGGCSEEECCS
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhC----------------------------------------ccCCCCCEEECCC
Confidence 246777777777766653221111100 0156788888888
Q ss_pred cccCCCc----chhhcCCCCCcEEEccCCcCccCchhhhhc-CCCcCEEEccCCc
Q 044176 286 NQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSIPVSFAN-MIVLESLDLSSNK 335 (362)
Q Consensus 286 n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n~ 335 (362)
|.+++.. +..+..+++|+.|++++|.+++.....+.. + ...+++++++
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8776543 223345678888888888877655555554 2 3567777776
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.5e-09 Score=95.63 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=99.4
Q ss_pred CCccEEeccCCccc---------CCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcccccccc
Q 044176 135 CDLRSLGLNSNKLR---------GSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIM 205 (362)
Q Consensus 135 ~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 205 (362)
++|+.|.+.+.... +.+...+..++.|+.|+++++.-.. .+. + .+++|++|++..+.+........+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 56777766543211 1233455667777777777662111 122 2 2677777777776665433222222
Q ss_pred ccCCcccEEeccCC--cccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEec
Q 044176 206 LPFEALRIIDLSHN--EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL 283 (362)
Q Consensus 206 ~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 283 (362)
..+++|+.|+++.+ ...+.... ..+..+ .....+|+|+.|++
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~------~~l~~~------------------------------l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDM------NVFRPL------------------------------FSKDRFPNLKWLGI 259 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCG------GGTGGG------------------------------SCTTTCTTCCEEEE
T ss_pred ccCCCCcEEEEeccccccccchhH------HHHHHH------------------------------HhcCCCCCcCEEeC
Confidence 35677777776431 11111000 000000 00012688999999
Q ss_pred cCcccCCCcchhh---cCCCCCcEEEccCCcCccCchh----hhhcCCCcCEEEccCCcccccCchhh
Q 044176 284 SSNQFQGEIPQVL---GDFKSLIVLNLSHNGLTGSIPV----SFANMIVLESLDLSSNKLHGRIPEQF 344 (362)
Q Consensus 284 ~~n~~~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~ 344 (362)
++|.+.+..+..+ ..+++|+.|+|+.|.+.+..+. .+..+++|+.|++++|.+++.....+
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 9999875444333 3578999999999999864433 34567999999999999886443333
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=2.2e-09 Score=94.54 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=71.9
Q ss_pred cEEEccCc-ccccCCcccccCCCCCCEEEccc-CcccccCC-CCcccccccccEEEcccccccCcchhhhhcCCCCccEE
Q 044176 64 RAFLFSNN-KLFGQIPPSIYSLSSLEYISLSH-NNLSGTIP-PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSL 140 (362)
Q Consensus 64 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 140 (362)
..++++++ .+. .+|. +..+.+|++|+|++ |.++ .++ ..+..+ ++|++|++++|.+.+..|..|... ++|++|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFT-PRLSRL 85 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSC-SCCCEE
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccc-cCCCEEECCCCccceeCHHHhcCC-cCCCEE
Confidence 34677776 676 4666 88888888888885 8887 444 445555 678888888888875555555543 788888
Q ss_pred eccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176 141 GLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172 (362)
Q Consensus 141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (362)
++++|.+++..+..+..+. |+.|++.+|.+.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888888755444555554 888888888774
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.94 E-value=4.7e-08 Score=87.14 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=51.4
Q ss_pred hcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhH
Q 044176 274 IITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAE 348 (362)
Q Consensus 274 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 348 (362)
.+++|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.++.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 3677888888777776556667788888888888643 55455677888888888888654 5545555676653
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=3.6e-09 Score=93.16 Aligned_cols=104 Identities=22% Similarity=0.171 Sum_probs=77.7
Q ss_pred EEEcccC-cccccCCCCcccccccccEEEccc-ccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEc
Q 044176 89 YISLSHN-NLSGTIPPCLGNFSTQLTILHLNN-NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV 166 (362)
Q Consensus 89 ~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 166 (362)
.++.+++ .++ .+|. +..+ ++|++|++++ |.+.+..+..|.. +++|++|++++|.+++..+..|..+++|+.|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGA-ENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCC-ccCC-CCCC-CCeeEEEccCCCCCCCcChhHhcc-ccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 5678887 787 7887 6666 6788888886 8887443444544 478888888888888777778888888888888
Q ss_pred cCCCCCCCcchhccCCCCCCeEEccCCcCCC
Q 044176 167 GNNMIGDTFPSWLGSLPGLKILVLRSNRFYG 197 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 197 (362)
++|.+....+..+..++ |+.|++.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88888765555555554 8888888887764
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=9.1e-08 Score=85.24 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=65.5
Q ss_pred cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~ 354 (362)
+.+++.+.+..+ ++......|.++++|+.+.+.++.++.+...+|.+|++|+.+++..+ ++.+...+|.++.+|+++.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 667888888654 44455667889999999999999888777789999999999999865 6656667899999999887
Q ss_pred CCc
Q 044176 355 RPD 357 (362)
Q Consensus 355 ~~~ 357 (362)
+++
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=2.6e-09 Score=85.01 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=49.3
Q ss_pred cccccEEeccCcccCCC----cchhhcCCCCCcEEEc--cCCcCccC----chhhhhcCCCcCEEEccCCccccc
Q 044176 275 ITIFTTIDLSSNQFQGE----IPQVLGDFKSLIVLNL--SHNGLTGS----IPVSFANMIVLESLDLSSNKLHGR 339 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~ 339 (362)
.+.|+.|++++|.+++. +...+...+.|++|+| ++|.+.+. +...+...++|++|++++|.+...
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 45688888888888754 3455667788999999 88988854 345566778999999999988743
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=1.8e-08 Score=80.09 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=63.1
Q ss_pred cccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccC----chhhhhcCCCcCEEEc--cCCcccccCchhh
Q 044176 275 ITIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGS----IPVSFANMIVLESLDL--SSNKLHGRIPEQF 344 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l--~~n~~~~~~~~~~ 344 (362)
.++|++|+|++|.+++.. ...+...++|++|+|++|.|.+. +..++...+.|++|++ ++|.+++.....+
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 456889999999987643 34456678999999999999854 3566778899999999 8899997644433
Q ss_pred hh-hHhhhccCCCccccCC
Q 044176 345 VD-AEICSSFARPDLYTNA 362 (362)
Q Consensus 345 ~~-l~~L~~l~~~~l~~n~ 362 (362)
.. +...+.|...++++|.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCcCEEeccCCC
Confidence 33 2333344444777763
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=2.6e-07 Score=77.16 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=67.5
Q ss_pred hhcccccEEeccCcccCC--CcchhhcCCCCCcEEEccCCcCccCchhhhhcCC--CcCEEEccCCcccccCch------
Q 044176 273 RIITIFTTIDLSSNQFQG--EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI--VLESLDLSSNKLHGRIPE------ 342 (362)
Q Consensus 273 ~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~------ 342 (362)
..+++|+.|+|++|++++ .++..+..+++|+.|+|++|++.+. ..+..++ .|++|++++|++.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347899999999999987 3456678899999999999999954 3445555 999999999999976652
Q ss_pred -hhhhhHhhhccCCCcc
Q 044176 343 -QFVDAEICSSFARPDL 358 (362)
Q Consensus 343 -~~~~l~~L~~l~~~~l 358 (362)
.+..+++|+.|+-..+
T Consensus 245 ~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHEL 261 (267)
T ss_dssp HHHHHCTTCCEESSCBC
T ss_pred HHHHHCcccCeECCcCC
Confidence 4677888888876654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=5.5e-08 Score=75.47 Aligned_cols=81 Identities=6% Similarity=-0.006 Sum_probs=56.7
Q ss_pred cccEEeccCcccCCCcchhhcCCCCCcEEEccCCc-CccCchhhhhcC----CCcCEEEccCCc-ccccCchhhhhhHhh
Q 044176 277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG-LTGSIPVSFANM----IVLESLDLSSNK-LHGRIPEQFVDAEIC 350 (362)
Q Consensus 277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~l~~L 350 (362)
.|+.||+++|.++++....+..+++|+.|+|++|. +++.....+..+ ++|++|++++|. +|+..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57888888888877766667788888888888884 666555666653 468888888874 776555556666666
Q ss_pred hccCCCc
Q 044176 351 SSFARPD 357 (362)
Q Consensus 351 ~~l~~~~ 357 (362)
++|++.+
T Consensus 142 ~~L~L~~ 148 (176)
T 3e4g_A 142 KYLFLSD 148 (176)
T ss_dssp CEEEEES
T ss_pred CEEECCC
Confidence 6664443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=9.2e-07 Score=68.59 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=16.2
Q ss_pred CCcEEEccCCC-CCCCcchhccCCCCCCeEEccCC
Q 044176 160 GLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSN 193 (362)
Q Consensus 160 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n 193 (362)
.|+.|++++|. +++.....+..+++|++|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 35555555442 44433334444555555555554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=5.9e-06 Score=68.99 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=54.2
Q ss_pred cCCCCCCEEEcccCcccc--cCCCCcccccccccEEEcccccccCcchhhhhcCCC--CccEEeccCCcccCCCc-----
Q 044176 82 YSLSSLEYISLSHNNLSG--TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC--DLRSLGLNSNKLRGSFP----- 152 (362)
Q Consensus 82 ~~l~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~----- 152 (362)
.++++|++|+|++|++++ .++..+..+ ++|+.|++++|.+.+. ..+... . .|++|++++|++.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCc--hhhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence 467888888888888874 233444455 6888888888888743 222211 2 78888888888875443
Q ss_pred --hhhhcCCCCcEEE
Q 044176 153 --RYLADCTGLEVVN 165 (362)
Q Consensus 153 --~~~~~l~~L~~L~ 165 (362)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 3466788888886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=1.7e-05 Score=62.70 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=42.8
Q ss_pred ccccEEeccCcccCCCc----chhhcCCCCCcEEEccCC---cCcc----CchhhhhcCCCcCEEEccCCcccc
Q 044176 276 TIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHN---GLTG----SIPVSFANMIVLESLDLSSNKLHG 338 (362)
Q Consensus 276 ~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n---~i~~----~~~~~~~~~~~L~~L~l~~n~~~~ 338 (362)
+.|+.|+|+.|.|++.. ...+..-+.|++|+|++| .+.+ .+.+.+..-+.|++|+++.|.+..
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 45778888888876543 334555677888888765 3342 234556777889999998876653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=6.2e-05 Score=59.48 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=47.5
Q ss_pred cccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccCch----hhhhcCCCcCEEEccCCc
Q 044176 275 ITIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSIP----VSFANMIVLESLDLSSNK 335 (362)
Q Consensus 275 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~ 335 (362)
-..|+.|+|++|.+.+.. ...+..-+.|++|+|++|.|.+... +++..-+.|++|+|++|.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 356899999999997653 4455677899999999999986443 445667889999998763
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0019 Score=47.41 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=33.4
Q ss_pred EEeccCcccC-CCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcc
Q 044176 280 TIDLSSNQFQ-GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336 (362)
Q Consensus 280 ~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 336 (362)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666665 2333322 23567777777777755555566777777777777754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.63 E-value=0.0051 Score=45.14 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=14.7
Q ss_pred EEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176 65 AFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL 97 (362)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 97 (362)
+|+|++|.++...+..|..+++|++|+|++|.+
T Consensus 35 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 333333333333334444555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.01 E-value=2.9 Score=28.54 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=33.5
Q ss_pred ccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCC
Q 044176 287 QFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSN 334 (362)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 334 (362)
.++......|.++.+|+++.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455567788888888888654 44466677888888888888753
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.94 E-value=16 Score=24.75 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=21.2
Q ss_pred CchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccC
Q 044176 151 FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192 (362)
Q Consensus 151 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 192 (362)
...+|.++..|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445555666666665543 2233334555666666665543
Done!