BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044180
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii
 pdb|3TQP|B Chain B, Structure Of An Enolase (Eno) From Coxiella Burnetii
          Length = 428

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 24  AIEKIMSFLVDVSNGEQIRSEGHCSKVKFEMQGVEFEADFHILDFFGANAVLAV 77
           A+E +   + D   G+  RS+    ++  E+ G E +A+       GANA+L V
Sbjct: 68  AVENVNGPIRDALLGQDPRSQEEIDRIXIELDGTENKAN------LGANAILGV 115


>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
          Length = 573

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 48  SKVKFEMQG-VEFEADFHILDFFGANAVLAVQ 78
           ++++ E+QG   FEADF +LD   AN +L+ Q
Sbjct: 173 AQLEKELQGGTLFEADFSLLDGIKANVILSSQ 204


>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase
          Length = 662

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 56  GVEFEADFHILDFFGANAVLAVQ 78
           G  FEADF +LD   AN +L  Q
Sbjct: 271 GTLFEADFALLDNIKANVILYCQ 293


>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
 pdb|2P0M|B Chain B, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
          Length = 662

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 56  GVEFEADFHILDFFGANAVLAVQ 78
           G  FEADF +LD   AN +L  Q
Sbjct: 271 GTLFEADFALLDNIKANVILYCQ 293


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,703,400
Number of Sequences: 62578
Number of extensions: 135063
Number of successful extensions: 270
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)