Query 044180
Match_columns 130
No_of_seqs 109 out of 268
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.3 8.9E-13 3E-17 96.8 5.5 80 32-112 68-147 (148)
2 2i1a_A DNA damage-inducible pr 98.9 1.6E-09 5.5E-14 77.8 6.4 63 44-110 82-144 (148)
3 3slz_A GAG-Pro-POL polyprotein 95.1 0.017 6E-07 41.3 3.7 58 30-91 58-115 (132)
4 1fmb_A EIAV protease; hydrolas 91.9 0.15 5.2E-06 34.8 3.6 54 32-90 51-104 (104)
5 3ec0_A Protease; HIV-2, inhibi 91.0 0.63 2.1E-05 31.6 5.9 55 32-90 45-99 (99)
6 2hs1_A HIV-1 protease; ultra-h 89.6 0.98 3.3E-05 30.6 6.0 55 32-90 45-99 (99)
7 3ka2_A [L-Ala51;Gly51']HIV-1 p 66.0 13 0.00045 28.1 5.7 55 33-91 46-100 (203)
8 2hah_A Protease, retropepsin; 61.0 11 0.00036 26.1 4.1 51 34-85 56-112 (116)
9 1nc8_A Nucleocapsid protein; H 57.0 2.8 9.6E-05 21.7 0.4 13 9-21 4-16 (29)
10 1b5f_B Protein (cardosin A); h 52.8 27 0.00093 21.6 4.8 29 70-99 57-85 (87)
11 1dsq_A Nucleic acid binding pr 51.4 2.6 9E-05 21.4 -0.3 9 12-20 3-11 (26)
12 1a6b_B Momulv, zinc finger pro 45.1 5.3 0.00018 22.6 0.3 10 11-20 10-19 (40)
13 2ihx_A Nucleocapsid (NC) prote 37.6 5.9 0.0002 23.9 -0.3 12 9-20 2-13 (61)
14 1u6p_A GAG polyprotein; MLV, A 35.2 8.2 0.00028 23.4 0.1 11 10-20 22-32 (56)
15 2k2d_A Ring finger and CHY zin 33.0 4.2 0.00014 26.3 -1.6 23 1-23 27-49 (79)
16 2ysa_A Retinoblastoma-binding 30.7 10 0.00034 22.9 -0.1 11 10-20 6-16 (55)
17 2ec7_A GAG polyprotein (PR55GA 28.9 6 0.00021 22.8 -1.3 12 9-20 4-15 (49)
18 1vf5_G Protein PET G; photosyn 26.0 13 0.00044 20.8 -0.2 12 2-13 24-35 (37)
19 3ts2_A Protein LIN-28 homolog 24.7 11 0.00039 26.6 -0.7 14 7-20 91-106 (148)
20 1cl4_A Protein (GAG polyprotei 24.4 17 0.00059 21.4 0.2 12 10-21 29-40 (60)
21 2g18_A Phycocyanobilin:ferredo 24.3 2.1E+02 0.007 22.0 6.4 31 55-85 86-117 (253)
22 3qvc_A Histo-aspartic protease 23.7 97 0.0033 25.4 4.7 28 71-99 420-447 (451)
23 2li8_A Protein LIN-28 homolog 23.3 11 0.00037 23.8 -1.0 11 10-20 23-33 (74)
24 1q90_G Cytochrome B6F complex 23.1 20 0.0007 20.0 0.3 12 2-13 24-35 (37)
25 2qtr_A Nicotinate (nicotinamid 23.0 28 0.00095 24.5 1.1 52 73-125 103-165 (189)
26 1vq8_U 50S ribosomal protein L 22.5 20 0.00069 22.4 0.2 16 11-26 3-18 (66)
27 2qgp_A HNH endonuclease; Q39X4 22.3 19 0.00066 24.1 0.1 16 8-23 32-47 (112)
28 1a1t_A Nucleocapsid protein; s 22.2 21 0.00072 20.6 0.2 13 8-20 9-21 (55)
29 3j21_V 50S ribosomal protein L 22.1 19 0.00066 22.5 0.1 16 11-26 4-19 (66)
30 2bl6_A Nucleocapsid protein P1 21.8 21 0.00073 19.0 0.2 8 13-20 2-9 (37)
31 2ct7_A Ring finger protein 31; 20.1 28 0.00096 22.1 0.5 15 12-26 52-66 (86)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.34 E-value=8.9e-13 Score=96.80 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=65.9
Q ss_pred eEEeeCCCeEeecceeeccEEeecCEEEEceeEEeecCCcceeecccchhccCceEEeccccEEEEEeCCeEEEEEeccC
Q 044180 32 LVDVSNGEQIRSEGHCSKVKFEMQGVEFEADFHILDFFGANAVLAVQWLEKLGKIVTDHKALTMEFTYRGQPIKLVGAQN 111 (130)
Q Consensus 32 ~V~vanG~~l~~~~~c~~~~~~iqg~~f~~dl~vL~l~g~DvILGmdWL~~~g~i~iD~~~~tl~f~~~g~~I~l~G~~~ 111 (130)
.+.++..+...+.+.++.++++|++..|..++.|+|...+|+|||||||.+++. .|||++++|+|...++.|.+-+..+
T Consensus 68 ~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~Vle~~~~d~LLGmD~L~~~~~-~ID~~~~~L~l~~~~~~~pfl~~~~ 146 (148)
T 3s8i_A 68 AGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQC-SIDLKKNVLVIGTTGTQTYFLPEGE 146 (148)
T ss_dssp CEECCC---CEEEEEEEEEEEEETTEEEEEEEEEETTCSSSEEECHHHHHHTTC-EEETTTTEEECTTTCCEEECCCGGG
T ss_pred eEEEEcCCccEEEEEEEEEEEEECCEEEEEEEEEeCCCCcCeeccHHHHHhCCE-EEEcCCCEEEEccCCeEEeecCccc
Confidence 344444345567778999999999999999999999999999999999999986 9999999999987778888766544
Q ss_pred C
Q 044180 112 I 112 (130)
Q Consensus 112 ~ 112 (130)
+
T Consensus 147 ~ 147 (148)
T 3s8i_A 147 L 147 (148)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.6e-09 Score=77.82 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=54.0
Q ss_pred cceeeccEEeecCEEEEceeEEeecCCcceeecccchhccCceEEeccccEEEEEeCCeEEEEEecc
Q 044180 44 EGHCSKVKFEMQGVEFEADFHILDFFGANAVLAVQWLEKLGKIVTDHKALTMEFTYRGQPIKLVGAQ 110 (130)
Q Consensus 44 ~~~c~~~~~~iqg~~f~~dl~vL~l~g~DvILGmdWL~~~g~i~iD~~~~tl~f~~~g~~I~l~G~~ 110 (130)
.+.+...++++++..|..++.++| .++|+|||||||++++. .+||++++|+|. ++.+.+....
T Consensus 82 ~~~~~~~~i~ig~~~~~~~~~vl~-~~~d~iLG~d~L~~~~~-~ID~~~~~l~l~--~~~~~f~~~~ 144 (148)
T 2i1a_A 82 IGRIHQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLA-CVDLKENVLRIA--EVETSFLSEA 144 (148)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEC-SSCSEEECHHHHHHTTC-EEETTTTEEEET--TEEEECCCTT
T ss_pred ccEEEEEEEEECCEEeceeEEEec-CCCCeEecHHHHhhCCE-EEECCCCEEEEc--cEEEecCChh
Confidence 556677799999999999999999 78999999999999976 999999999986 4666665443
No 3
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=95.15 E-value=0.017 Score=41.34 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=38.7
Q ss_pred ceeEEeeCCCeEeecceeeccEEeecCEEEEceeEEeecCCcceeecccchhccCceEEecc
Q 044180 30 SFLVDVSNGEQIRSEGHCSKVKFEMQGVEFEADFHILDFFGANAVLAVQWLEKLGKIVTDHK 91 (130)
Q Consensus 30 ~~~V~vanG~~l~~~~~c~~~~~~iqg~~f~~dl~vL~l~g~DvILGmdWL~~~g~i~iD~~ 91 (130)
+..|.-++|. +. ......+++++.|..+...+.+++- ...-|||+|||.++|. ++|+.
T Consensus 58 p~~I~GiGG~-i~-vr~~~~i~IeI~g~~~~~~~lV~~~-tPvnLLGrd~Ltqlg~-tL~fp 115 (132)
T 3slz_A 58 SAWVQGATGG-KR-YRWTTDRKVHLATGKVTHSFLHVPD-CPYPLLGRDLLTKLKA-QIHFE 115 (132)
T ss_dssp EEEEECSSCE-EE-EEEECCEEEEETTEEEEECCEECTT-SSSCEECHHHHHHHTC-EEEEE
T ss_pred ceEEEccCCE-EE-EEEEeeeEEEECCeeecceEEEECC-CCccEECHhhHhhCCc-EEECC
Confidence 3445445554 44 3333567899999998887765422 2357899999999988 55543
No 4
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=91.89 E-value=0.15 Score=34.82 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=43.8
Q ss_pred eEEeeCCCeEeecceeeccEEeecCEEEEceeEEeecCCcceeecccchhccCceEEec
Q 044180 32 LVDVSNGEQIRSEGHCSKVKFEMQGVEFEADFHILDFFGANAVLAVQWLEKLGKIVTDH 90 (130)
Q Consensus 32 ~V~vanG~~l~~~~~c~~~~~~iqg~~f~~dl~vL~l~g~DvILGmdWL~~~g~i~iD~ 90 (130)
....+.|+.+... ..++++++.|+.....+++-|. ..=|+|-|||.++|. ++||
T Consensus 51 ~~i~GiGG~i~v~--~~~i~i~i~g~~~~gtvlv~~t--p~niiGRd~L~qlg~-tLnf 104 (104)
T 1fmb_A 51 TGIGGVGGNVETF--STPVTIKKKGRHIKTRMLVADI--PVTILGRDILQDLGA-KLVL 104 (104)
T ss_dssp CCEEETTEEECCE--EEEEEEEETTEEEEEEEEEESC--SSCEECHHHHHHTTC-CCCC
T ss_pred cEEEeCCCeEEee--EeeeEEEECCeEEEEEEEECCC--CCCEecHhHHhhcCc-EEeC
Confidence 5567889998888 6999999999999888877553 356899999999987 4543
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=90.98 E-value=0.63 Score=31.65 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=44.0
Q ss_pred eEEeeCCCeEeecceeeccEEeecCEEEEceeEEeecCCcceeecccchhccCceEEec
Q 044180 32 LVDVSNGEQIRSEGHCSKVKFEMQGVEFEADFHILDFFGANAVLAVQWLEKLGKIVTDH 90 (130)
Q Consensus 32 ~V~vanG~~l~~~~~c~~~~~~iqg~~f~~dl~vL~l~g~DvILGmdWL~~~g~i~iD~ 90 (130)
.+..+.|+.+...+. .+++|++.|+.....++|=|.. . =|+|-|+|.++|. +++|
T Consensus 45 k~igGiGG~i~v~qy-~~i~iei~g~~~~gtvlV~~tP-v-niiGRnlLtqlG~-tLnf 99 (99)
T 3ec0_A 45 KIVGGIGGFINTKEY-KNVEIEVLNKKVRATIMTGDTP-I-NIFGRNILTALGM-SLNL 99 (99)
T ss_dssp EEEEETTEEEEEEEE-EEEEEEETTEEEEEEEEEECCS-S-CEECHHHHHHHTC-EEEC
T ss_pred eEEEecCCcEeeeEE-eeEEEEECCeEEEEEEEeCCCC-c-CeeehhhHhhcCc-EEeC
Confidence 367888999998884 8899999999988888774432 2 4789999999987 5654
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=89.58 E-value=0.98 Score=30.60 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=43.7
Q ss_pred eEEeeCCCeEeecceeeccEEeecCEEEEceeEEeecCCcceeecccchhccCceEEec
Q 044180 32 LVDVSNGEQIRSEGHCSKVKFEMQGVEFEADFHILDFFGANAVLAVQWLEKLGKIVTDH 90 (130)
Q Consensus 32 ~V~vanG~~l~~~~~c~~~~~~iqg~~f~~dl~vL~l~g~DvILGmdWL~~~g~i~iD~ 90 (130)
.+..+.|+.+...+. .++++++.|+.....++|-|.. . =|+|-|||.++|. ++||
T Consensus 45 k~igGiGG~i~v~qy-~qi~iei~g~~~~gtvlV~~tP-v-niiGRd~Ltqlg~-tLnf 99 (99)
T 2hs1_A 45 KMIGGIGGFIKVRQY-DQIIIEIAGHKAIGTVLVGPTP-V-NIIGRNLLTQIGA-TLNF 99 (99)
T ss_dssp EEEEETTEEEEEEEE-EEEEEEETTEEEEEEEEESCCS-S-CEECHHHHTTTTC-EEEC
T ss_pred cEEEeCCCcEeeeEe-ccEEEEEeCCEEEEEEEeCCCc-c-CchhHhHHHHcCC-EEeC
Confidence 466778888887754 7999999999999999885543 3 3789999999987 5654
No 7
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=66.04 E-value=13 Score=28.09 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=44.6
Q ss_pred EEeeCCCeEeecceeeccEEeecCEEEEceeEEeecCCcceeecccchhccCceEEecc
Q 044180 33 VDVSNGEQIRSEGHCSKVKFEMQGVEFEADFHILDFFGANAVLAVQWLEKLGKIVTDHK 91 (130)
Q Consensus 33 V~vanG~~l~~~~~c~~~~~~iqg~~f~~dl~vL~l~g~DvILGmdWL~~~g~i~iD~~ 91 (130)
+..+-|+.+..... .++++++.|+.....+.|-+. ..=|+|-|-|.++|- ++||.
T Consensus 46 ~igGIGG~i~vrqy-~~i~iei~g~~~~gtvlVg~t--PvnIiGRd~LtqlG~-tLnf~ 100 (203)
T 3ka2_A 46 LIGGIAGFIKVRQY-DQIPVEIXGHKAIGTVLVGPT--PVNIIGRNLLTQIGX-TLNFX 100 (203)
T ss_dssp EEEETTEEEEEEEE-EEEEEEETTEEEEEEEEESCC--SSCEECHHHHTTTTC-EEEGG
T ss_pred EEEEccCcEEEEEE-cceeEEEcCeEEEEEEeeCCC--CcCccchhhhhhcCc-eEEec
Confidence 55778888888776 689999999998888877553 344899999999987 78887
No 8
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=60.96 E-value=11 Score=26.06 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=39.9
Q ss_pred EeeCCCeEeecceeeccEEeecCEE-----EEceeEEee-cCCcceeecccchhccCc
Q 044180 34 DVSNGEQIRSEGHCSKVKFEMQGVE-----FEADFHILD-FFGANAVLAVQWLEKLGK 85 (130)
Q Consensus 34 ~vanG~~l~~~~~c~~~~~~iqg~~-----f~~dl~vL~-l~g~DvILGmdWL~~~g~ 85 (130)
..+.|+.+.... ..++++++.|+. ....++|.| ...--=|+|=|||.++|.
T Consensus 56 igGiGG~i~v~q-y~qv~iei~g~~~~~~~~~gtvlV~p~tP~~vniiGRd~Ltqlg~ 112 (116)
T 2hah_A 56 IGGIGGFIRGTN-YINVHLEIRDENYKTQCIFGNVCVLEDNSTPVNILGRDNMIKFNI 112 (116)
T ss_dssp EEETTEEEEEEE-EEEEEEEECCTTSCCEEEEEEEEEETTCCCSSEEECHHHHTTTTC
T ss_pred EecCCCceeeeE-EccEEEEEeCCCCCcceeEEEEEECCCCCccccEecHHHHhHcCC
Confidence 678899888874 478999999987 778888877 441124889999999986
No 9
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=57.02 E-value=2.8 Score=21.74 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=10.1
Q ss_pred HhccceEecCCCC
Q 044180 9 RAQGLRFNCDEPF 21 (130)
Q Consensus 9 r~~Glcf~cde~f 21 (130)
|....||+|+++-
T Consensus 4 r~~~~C~nCgk~G 16 (29)
T 1nc8_A 4 RKVIRCWNCGKEG 16 (29)
T ss_dssp CCCCBCTTTSCBS
T ss_pred CCCCEEEECCccc
Confidence 4567899999963
No 10
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=52.84 E-value=27 Score=21.62 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.7
Q ss_pred CcceeecccchhccCceEEeccccEEEEEe
Q 044180 70 GANAVLAVQWLEKLGKIVTDHKALTMEFTY 99 (130)
Q Consensus 70 g~DvILGmdWL~~~g~i~iD~~~~tl~f~~ 99 (130)
+-..|||--+|+.+-. ..|..+.++.|..
T Consensus 57 ~~~~ILGd~Fl~~~y~-vfD~~~~riGfA~ 85 (87)
T 1b5f_B 57 GPLWILGDVFMRPYHT-VFDYGNLLVGFAE 85 (87)
T ss_dssp SBEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CCeEEechHHhccEEE-EEECCCCEEEEEE
Confidence 3457999999998855 8999999999864
No 11
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=51.40 E-value=2.6 Score=21.35 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=7.7
Q ss_pred cceEecCCC
Q 044180 12 GLRFNCDEP 20 (130)
Q Consensus 12 Glcf~cde~ 20 (130)
+.||+|++.
T Consensus 3 ~~Cf~CG~~ 11 (26)
T 1dsq_A 3 PVCFSCGKT 11 (26)
T ss_dssp CBCTTTCCB
T ss_pred CeeEeCCCC
Confidence 579999985
No 12
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=45.10 E-value=5.3 Score=22.60 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=8.8
Q ss_pred ccceEecCCC
Q 044180 11 QGLRFNCDEP 20 (130)
Q Consensus 11 ~Glcf~cde~ 20 (130)
+..||+|+++
T Consensus 10 ~~~C~~Cgk~ 19 (40)
T 1a6b_B 10 RDQCAYCKEK 19 (40)
T ss_dssp SSSCSSSCCT
T ss_pred CCeeeECCCC
Confidence 5789999996
No 13
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=37.59 E-value=5.9 Score=23.87 Aligned_cols=12 Identities=50% Similarity=1.165 Sum_probs=8.6
Q ss_pred HhccceEecCCC
Q 044180 9 RAQGLRFNCDEP 20 (130)
Q Consensus 9 r~~Glcf~cde~ 20 (130)
|....||+|++.
T Consensus 2 r~~~~C~~Cg~~ 13 (61)
T 2ihx_A 2 RARGLCYTCGSP 13 (61)
T ss_dssp CCTTBCSSSCCB
T ss_pred CCCCcccccCCC
Confidence 455678888884
No 14
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=35.24 E-value=8.2 Score=23.35 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=9.0
Q ss_pred hccceEecCCC
Q 044180 10 AQGLRFNCDEP 20 (130)
Q Consensus 10 ~~Glcf~cde~ 20 (130)
.+..||+|+|+
T Consensus 22 ~~~~C~~Cge~ 32 (56)
T 1u6p_A 22 DRDQCAYCKEK 32 (56)
T ss_dssp CTTBCSSSCCB
T ss_pred CCCcceeCCCC
Confidence 35789999995
No 15
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=33.05 E-value=4.2 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=14.5
Q ss_pred ChhhhhHHHhccceEecCCCCCc
Q 044180 1 MAAEMQICRAQGLRFNCDEPFNP 23 (130)
Q Consensus 1 ~~a~~~~rr~~Glcf~cde~f~p 23 (130)
|+++.+.++..-+|..|+.+|..
T Consensus 27 mP~~y~~~~v~I~CnDC~~~s~v 49 (79)
T 2k2d_A 27 MPSEYQNMTVDILCNDCNGRSTV 49 (79)
T ss_dssp ------CCEEEEEESSSCCEEEE
T ss_pred CCHHHhCCEeEEECCCCCCCccC
Confidence 67777778888999999998754
No 16
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.67 E-value=10 Score=22.88 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=8.9
Q ss_pred hccceEecCCC
Q 044180 10 AQGLRFNCDEP 20 (130)
Q Consensus 10 ~~Glcf~cde~ 20 (130)
+...||+|+++
T Consensus 6 ~~~~C~kCGk~ 16 (55)
T 2ysa_A 6 SGYTCFRCGKP 16 (55)
T ss_dssp SSCCCTTTCCT
T ss_pred CCCccccCCCc
Confidence 35689999995
No 17
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=28.86 E-value=6 Score=22.77 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=8.8
Q ss_pred HhccceEecCCC
Q 044180 9 RAQGLRFNCDEP 20 (130)
Q Consensus 9 r~~Glcf~cde~ 20 (130)
|....||+|++.
T Consensus 4 ~r~~~C~~Cg~~ 15 (49)
T 2ec7_A 4 RKVIRCWNCGKE 15 (49)
T ss_dssp CCCCBCTTTCCB
T ss_pred CCcCeeeecCCC
Confidence 445789999984
No 18
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=25.96 E-value=13 Score=20.84 Aligned_cols=12 Identities=42% Similarity=0.257 Sum_probs=7.3
Q ss_pred hhhhhHHHhccc
Q 044180 2 AAEMQICRAQGL 13 (130)
Q Consensus 2 ~a~~~~rr~~Gl 13 (130)
+|+.||||.+-+
T Consensus 24 ~Ay~QyrRg~ql 35 (37)
T 1vf5_G 24 AAYQQYKRPNEL 35 (37)
T ss_dssp HHHHHTCC----
T ss_pred HHHHHHhhcccc
Confidence 689999997643
No 19
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.66 E-value=11 Score=26.65 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=9.9
Q ss_pred HHHhcc--ceEecCCC
Q 044180 7 ICRAQG--LRFNCDEP 20 (130)
Q Consensus 7 ~rr~~G--lcf~cde~ 20 (130)
.||.++ .||+|++.
T Consensus 91 ~rrp~~~~~C~~Cg~~ 106 (148)
T 3ts2_A 91 ERRPKGGDRCYNCGGL 106 (148)
T ss_dssp TTSCCCSCCCTTTCCS
T ss_pred ccccCCCCcccEeCCc
Confidence 345443 79999996
No 20
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=24.37 E-value=17 Score=21.44 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=9.6
Q ss_pred hccceEecCCCC
Q 044180 10 AQGLRFNCDEPF 21 (130)
Q Consensus 10 ~~Glcf~cde~f 21 (130)
..+.||+|+++-
T Consensus 29 ~~~~C~~Cg~~G 40 (60)
T 1cl4_A 29 VPGLCPRCKRGK 40 (60)
T ss_dssp CCCSCSSCSSCS
T ss_pred CCcceeECCCCC
Confidence 468999999953
No 21
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=24.30 E-value=2.1e+02 Score=21.98 Aligned_cols=31 Identities=3% Similarity=-0.080 Sum_probs=21.7
Q ss_pred cCEEEEceeEEeecCCcce-eecccchhccCc
Q 044180 55 QGVEFEADFHILDFFGANA-VLAVQWLEKLGK 85 (130)
Q Consensus 55 qg~~f~~dl~vL~l~g~Dv-ILGmdWL~~~g~ 85 (130)
+...-.-++++.|--.||+ |+|+|++..-+.
T Consensus 86 G~~lqVLn~V~fP~~~yDLPiFG~Dlv~~~~~ 117 (253)
T 2g18_A 86 GNMLDILHCVMFPRPEYDLPMFGCDLVGGRGQ 117 (253)
T ss_dssp TTTEEEEEEEEEECTTSCCCEEEEEEEEETTE
T ss_pred CCCcEEEEEEEcCCCCCCCCeeeeeeeccCCc
Confidence 3344445777788888998 789999875443
No 22
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=23.72 E-value=97 Score=25.36 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.1
Q ss_pred cceeecccchhccCceEEeccccEEEEEe
Q 044180 71 ANAVLAVQWLEKLGKIVTDHKALTMEFTY 99 (130)
Q Consensus 71 ~DvILGmdWL~~~g~i~iD~~~~tl~f~~ 99 (130)
-..|||..+|+.+-- ..|+.+.++.|..
T Consensus 420 ~~~ILG~~FLr~~Yv-VfD~~n~rIGfA~ 447 (451)
T 3qvc_A 420 NTFVLGDPFMRKYFT-VYDYDNHTVGFAL 447 (451)
T ss_dssp TEEEECHHHHHHEEE-EEETTTTEEEEEE
T ss_pred CCEEECHHHhhcEEE-EEECCCCEEEEEE
Confidence 458999999999855 8999999999975
No 23
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=23.34 E-value=11 Score=23.84 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=8.4
Q ss_pred hccceEecCCC
Q 044180 10 AQGLRFNCDEP 20 (130)
Q Consensus 10 ~~Glcf~cde~ 20 (130)
....||+|++.
T Consensus 23 r~~~C~~Cg~~ 33 (74)
T 2li8_A 23 KGDRCYNCGGL 33 (74)
T ss_dssp TTSCCTTTCCS
T ss_pred CCCcccccCCc
Confidence 34689999984
No 24
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=23.07 E-value=20 Score=19.99 Aligned_cols=12 Identities=25% Similarity=0.116 Sum_probs=6.4
Q ss_pred hhhhhHHHhccc
Q 044180 2 AAEMQICRAQGL 13 (130)
Q Consensus 2 ~a~~~~rr~~Gl 13 (130)
+|..||||.+-+
T Consensus 24 ~Ay~QyrRg~~l 35 (37)
T 1q90_G 24 TAYLQYLRGDLA 35 (37)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHhhcccc
Confidence 689999997654
No 25
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=23.02 E-value=28 Score=24.48 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=30.3
Q ss_pred eeecccchhccCceEEecc-----ccEEEEEeCCe------EEEEEeccCCCCChhhHHHHHhc
Q 044180 73 AVLAVQWLEKLGKIVTDHK-----ALTMEFTYRGQ------PIKLVGAQNIRPKPTQSIHLQSR 125 (130)
Q Consensus 73 vILGmdWL~~~g~i~iD~~-----~~tl~f~~~g~------~I~l~G~~~~~is~~Q~~~l~~~ 125 (130)
+|.|.|++..+.. .-|+. ..-+.+.+.|. .|.+-..+...||++..|++...
T Consensus 103 ~v~G~D~~~~~~~-w~~~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSST~IR~~l~~ 165 (189)
T 2qtr_A 103 FIIGGDMVEYLPK-WYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKE 165 (189)
T ss_dssp EEEEHHHHHHGGG-STTHHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHHHHHHHHHT
T ss_pred EEEehhhhhhhhc-cCCHHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCccCHHHHHHHHHc
Confidence 7889998877652 11222 12222234443 45554445567999999988753
No 26
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=22.55 E-value=20 Score=22.42 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.0
Q ss_pred ccceEecCCCCCcccc
Q 044180 11 QGLRFNCDEPFNPAIE 26 (130)
Q Consensus 11 ~Glcf~cde~f~p~h~ 26 (130)
..+|++|+.+--|+|.
T Consensus 3 ~~~C~Fcg~~IyPG~G 18 (66)
T 1vq8_U 3 TRECDYCGTDIEPGTG 18 (66)
T ss_dssp -CBCTTTCCBCCSSCC
T ss_pred eeEecCcCCcccCCCc
Confidence 4789999999999996
No 27
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=22.34 E-value=19 Score=24.10 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.3
Q ss_pred HHhccceEecCCCCCc
Q 044180 8 CRAQGLRFNCDEPFNP 23 (130)
Q Consensus 8 rr~~Glcf~cde~f~p 23 (130)
+|..|.|..|+.++.+
T Consensus 32 ~r~~~~C~yCg~~~~~ 47 (112)
T 2qgp_A 32 RIARGICHYCGEIFPP 47 (112)
T ss_dssp HHHHTBCTTTCCBCCG
T ss_pred HHcCCcCCCCCCcCCC
Confidence 4678999999998754
No 28
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=22.19 E-value=21 Score=20.65 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=9.7
Q ss_pred HHhccceEecCCC
Q 044180 8 CRAQGLRFNCDEP 20 (130)
Q Consensus 8 rr~~Glcf~cde~ 20 (130)
.+....||+|++.
T Consensus 9 ~~~~~~C~~Cg~~ 21 (55)
T 1a1t_A 9 QRKTVKCFNCGKE 21 (55)
T ss_dssp GGGTCBCTTTCCB
T ss_pred CCCCcceeeeCCC
Confidence 3455789999984
No 29
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.13 E-value=19 Score=22.49 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=14.5
Q ss_pred ccceEecCCCCCcccc
Q 044180 11 QGLRFNCDEPFNPAIE 26 (130)
Q Consensus 11 ~Glcf~cde~f~p~h~ 26 (130)
..+|++|+.+--|+|.
T Consensus 4 ~~~C~Fcg~~IyPG~G 19 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTG 19 (66)
T ss_dssp CCBCTTTCSBCCTTCC
T ss_pred eeEecCcCCcccCCCC
Confidence 4689999999999997
No 30
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=21.76 E-value=21 Score=19.02 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=6.3
Q ss_pred ceEecCCC
Q 044180 13 LRFNCDEP 20 (130)
Q Consensus 13 lcf~cde~ 20 (130)
.||+|++.
T Consensus 2 ~C~~Cg~~ 9 (37)
T 2bl6_A 2 TCYNCGKP 9 (37)
T ss_dssp CBSSSCCS
T ss_pred cccccCCC
Confidence 58999873
No 31
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.09 E-value=28 Score=22.06 Aligned_cols=15 Identities=7% Similarity=0.297 Sum_probs=11.1
Q ss_pred cceEecCCCCCcccc
Q 044180 12 GLRFNCDEPFNPAIE 26 (130)
Q Consensus 12 Glcf~cde~f~p~h~ 26 (130)
.-||+|.++|-..|.
T Consensus 52 ~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 52 TFCVRCKRQWEEQHR 66 (86)
T ss_dssp EECSSSCSBCCTTTT
T ss_pred ccccccCCchhhcCC
Confidence 468999999955554
Done!