Citrus Sinensis ID: 044181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVNLELCA
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccHHHcccccccccccccccccccccccccccccccEEccccccEcccccccccccHHccccccccccccccccccccccccccccccccEEEEEcccccccccHHHEEcccEEEccccccccc
Coil and Loop (DISEMBL)
mkrafqesseldhsLNMANCLMFlshgrgfnavngvntMAAGRAFecktcnrqfpsfqalgghrashkkprftdgnggvdmqqlpikpkthecsvcglEFAIGQALGghmrrhraaglhgneklsdlsglsdkaplvkkansrgglcldlnltpyendletfrlgnkvdSLVNLELCA
Flexible Loop (DISEMBL)
MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFqalgghrashKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHgneklsdlsglsDKAPLVKKansrgglcldlNLTPYENDLEtfrlgnkvdslvnlelca
Low Complexity Region (SEG)
MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVNLELCA
Disordered region (IsUnstruct)
**************LNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQAL*************************IKPKTHECSVCGLEFAIGQALGGHMRR******************************RGGLCLDLNLTPYENDLETFRLGNKVDSLVNLE***
Disordered Region (DISOPRED)
******************NCLM*************************KTCNRQFP***********************************HECSVCGLEFAIGQALGGHMRR***********************************LDLNLTPYENDLE***********V*LE***
Disordered Region (DISEMBL)
***********DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQA*********KPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVNLELCA
Disordered Region (DISPRO)
************HSLNMANCLMFLSHG**************GRAFECKTCNRQFPSFQAL*****************************THECSVCGLEFAIGQAL************************************RGGLCLDLNLTPYENDLETFRLGNKVDSLVNLELC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVNLELCA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q9SLD4	178	Zinc finger protein ZAT11	yes	no	0.865	0.865	0.437	1e-26
Q42410	162	Zinc finger protein ZAT12	no	no	0.859	0.944	0.426	1e-21
Q681X4	286	Zinc finger protein ZAT5	no	no	0.747	0.465	0.338	9e-20
Q42453	168	Zinc finger protein ZAT7	no	no	0.764	0.809	0.404	2e-18
Q9LX85	164	Zinc finger protein ZAT8	no	no	0.719	0.780	0.413	2e-16
Q9SSW0	193	Zinc finger protein AZF3	no	no	0.640	0.590	0.398	4e-14
Q9M202	288	Zinc finger protein ZAT9	no	no	0.724	0.447	0.329	9e-14
Q39092	267	Zinc finger protein ZAT1	no	no	0.415	0.277	0.493	3e-12
O65499	284	Zinc finger protein ZAT3	no	no	0.679	0.426	0.347	2e-11
Q9SIJ0	270	Zinc finger protein ZAT2	no	no	0.758	0.5	0.300	8e-11

>sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 13/167 (7%)

Query: 1   MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRA---FECKTCNRQFPSF 57
           MKR   +  E   ++++A CLM L+       + G+N          FECKTCN++F SF
Sbjct: 1   MKRERSDFEESLKNIDIAKCLMILAQTSMVKQI-GLNQHTESHTSNQFECKTCNKRFSSF 59

Query: 58  QALGGHRASHKKPRFTDGNGGVDMQQLPIKPK---THECSVCGLEFAIGQALGGHMRRHR 114
           QALGGHRASHKKP+ T      D++ L    K    H+CS+C   F  GQALGGHMRRHR
Sbjct: 60  QALGGHRASHKKPKLTVEQK--DVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHR 117

Query: 115 AAGLHGNEKLSDLSGLSDKAPLVKK-ANSRGGLCLDLNLTPYENDLE 160
           ++      + S +S +    P++K+  +S+  L LDLNLTP ENDLE
Sbjct: 118 SS---MTVEPSFISPMIPSMPVLKRCGSSKRILSLDLNLTPLENDLE 161

Probable transcription factor that may be involved in stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42410|ZAT12_ARATH Zinc finger protein ZAT12 OS=Arabidopsis thaliana GN=ZAT12 PE=2 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 11/164 (6%)

Query: 9   SELDHSLNM--ANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRAS 66
           SE+  ++++  ANCLM LS   G   V+G +     R F CKTC +QF SFQALGGHRAS
Sbjct: 5   SEIKSTVDVTAANCLMLLSR-VGQENVDGGDQK---RVFTCKTCLKQFHSFQALGGHRAS 60

Query: 67  HKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSD 126
           HKKP     + G+ M++  +K  +H C +CG+EF +GQALGGHMRRHR         L  
Sbjct: 61  HKKPNNDALSSGL-MKK--VKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVT 117

Query: 127 LSGLSDKAPLVKKANSRGG--LCLDLNLTPYENDLETFRLGNKV 168
            + L +      K +S G    CLDL+L   +N      LG  V
Sbjct: 118 RALLPEPTVTTLKKSSSGKRVACLDLSLGMVDNLNLKLELGRTV 161

Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 92/201 (45%), Gaps = 68/201 (33%)

Query: 16  NMANCLMFLSHGRGFNAVNGVNTM----------AAGRAFECKTCNRQFPSFQALGGHRA 65
           +MA CL+ L+ G    + +  N+           ++   +ECKTCNR F SFQALGGHRA
Sbjct: 76  DMAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRA 135

Query: 66  SHKKPRFTDGNGGVDMQQLPI-KPKT--------------------------------HE 92
           SHKKPR        +  +LP+ +PK+                                HE
Sbjct: 136 SHKKPR----TSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHE 191

Query: 93  CSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANS---------- 142
           CS+CG EF  GQALGGHMRRHR A       ++ +S ++  A + + +            
Sbjct: 192 CSICGSEFTSGQALGGHMRRHRTA-------VTTISPVAATAEVSRNSTEEEIEINIGRS 244

Query: 143 ----RGGLCLDLNLTPYENDL 159
               R  L LDLNL   E+DL
Sbjct: 245 MEQQRKYLPLDLNLPAPEDDL 265

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42453|ZAT7_ARATH Zinc finger protein ZAT7 OS=Arabidopsis thaliana GN=ZAT7 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 75/141 (53%), Gaps = 5/141 (3%)

Query: 18  ANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNG 77
           A CLM LS         G +     R F CKTC ++F SFQALGGHRASHKK   +D   
Sbjct: 17  AKCLMLLSRVGECGGGCGGDE----RVFRCKTCLKEFSSFQALGGHRASHKKLINSDNPS 72

Query: 78  GVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN-EKLSDLSGLSDKAPL 136
            +          +H C +CG++F +GQALGGHMRRHR   + G+    S L   +    L
Sbjct: 73  LLGSLSNKKTKTSHPCPICGVKFPMGQALGGHMRRHRNEKVSGSLVTRSFLPETTTVTAL 132

Query: 137 VKKANSRGGLCLDLNLTPYEN 157
            K ++ +   CLDL+L   E+
Sbjct: 133 KKFSSGKRVACLDLDLDSMES 153

Probable transcription factor involved in oxidative stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX85|ZAT8_ARATH Zinc finger protein ZAT8 OS=Arabidopsis thaliana GN=ZAT8 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 72/138 (52%), Gaps = 10/138 (7%)

Query: 18  ANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKK-PRFTDGN 76
           A CLM LS       V         R F CKTC ++F SFQALGGHRASHKK    +D +
Sbjct: 16  AKCLMLLSR------VGECGGGGEKRVFRCKTCLKEFSSFQALGGHRASHKKLINSSDPS 69

Query: 77  GGVDMQQLPIKPKT-HECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKL--SDLSGLSDK 133
               +     K  T H C +CG+EF +GQALGGHMRRHR+        +  S L   +  
Sbjct: 70  LLGSLSNKKTKTATSHPCPICGVEFPMGQALGGHMRRHRSEKASPGTLVTRSFLPETTTV 129

Query: 134 APLVKKANSRGGLCLDLN 151
             L K ++ +   CLDL+
Sbjct: 130 TTLKKSSSGKRVACLDLD 147

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW0|AZF3_ARATH Zinc finger protein AZF3 OS=Arabidopsis thaliana GN=AZF3 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 69/128 (53%), Gaps = 14/128 (10%)

Query: 2   KRAFQESSELDHSLNM------ANCLMFLSHGRG-FNAVNGVNTMAAGRAFECKTCNRQF 54
           KR+ +  S+L H+  +      A CLM L+   G  ++V    T+A   +++C  C + F
Sbjct: 29  KRSKRSRSDLHHNHRLTEEEYLAFCLMLLARDGGDLDSV----TVAEKPSYKCGVCYKTF 84

Query: 55  PSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHR 114
            S+QALGGH+ASH   R   G G  D        K+H CSVCG  FA GQALGGH R H 
Sbjct: 85  SSYQALGGHKASH---RSLYGGGENDKSTPSTAVKSHVCSVCGKSFATGQALGGHKRCHY 141

Query: 115 AAGLHGNE 122
             G+  +E
Sbjct: 142 DGGVSNSE 149

Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 77/170 (45%), Gaps = 41/170 (24%)

Query: 16  NMANCLMFLSHGR---------------------GFNAVNGVNTMAAGRAFECKTCNRQF 54
           ++A CLM LS  +                     G+N +N   T   GR ++C+TC + F
Sbjct: 126 DLAFCLMMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRATT--KGR-YKCETCGKVF 182

Query: 55  PSFQALGGHRASHKKPRFTDGNGGVDMQQ-----LPIKPKTHECSVCGLEFAIGQALGGH 109
            S+QALGGHRASHKK R ++       +      + +  + HEC +C   FA GQALGGH
Sbjct: 183 KSYQALGGHRASHKKNRVSNNKTEQRSETEYDNVVVVAKRIHECPICLRVFASGQALGGH 242

Query: 110 MRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNL-TPYEND 158
            R H    L  N++             V +  S     +DLNL  P E D
Sbjct: 243 KRSHGVGNLSVNQQRR-----------VHRNESVKQRMIDLNLPAPTEED 281

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39092|ZAT1_ARATH Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 43  RAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKT---HECSVCGLE 99
           + FEC+TC + F S+QALGGHRASHKK        G D  +   K  T   HEC +C   
Sbjct: 158 KWFECETCEKVFKSYQALGGHRASHKKKIAETDQLGSDELKKKKKKSTSSHHECPICAKV 217

Query: 100 FAIGQALGGHMRRHRAA 116
           F  GQALGGH R H +A
Sbjct: 218 FTSGQALGGHKRSHASA 234

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|O65499|ZAT3_ARATH Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 77/167 (46%), Gaps = 46/167 (27%)

Query: 9   SELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK 68
           SE DH +  A+CL+ LS        NG  + ++   FEC  C + F S QALGGHRASHK
Sbjct: 136 SEEDHEV--ASCLLMLS--------NGTPSSSSIERFECGGCKKVFGSHQALGGHRASHK 185

Query: 69  K-------------PRFTDGNGGVDMQ-QLPIKPKTHECSVCGLEFAIGQALGGHMRRHR 114
                         P     + G D Q ++      H+C++C   F+ GQALGGHMR H 
Sbjct: 186 NVKGCFAITNVTDDPMTVSTSSGHDHQGKILTFSGHHKCNICFRVFSSGQALGGHMRCHW 245

Query: 115 AAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLET 161
                  EK        ++ P++  A       LDLN+ P   DL T
Sbjct: 246 -------EK--------EEEPMISGA-------LDLNVPPTIQDLST 270

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ0|ZAT2_ARATH Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 28/163 (17%)

Query: 7   ESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRAS 66
           + SE +H  N+A+CL+ +++G      + V        FEC  C + F S QALGGHRA+
Sbjct: 117 DPSEEEH--NIASCLLMMANGDVPTRSSEVE-----ERFECDGCKKVFGSHQALGGHRAT 169

Query: 67  HKKPR-------FTDGNGGVDMQQLPIKPK----------THECSVCGLEFAIGQALGGH 109
           HK  +        T+       Q++  + K           H C++C   F+ GQALGGH
Sbjct: 170 HKDVKGCFANKNITEDPPPPPPQEIVDQDKGKSVKLVSGMNHRCNICSRVFSSGQALGGH 229

Query: 110 MRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNL 152
           MR H       +++ + + G+    P    +++  G  LDL L
Sbjct: 230 MRCH----WEKDQEENQVRGIDLNVPAATSSDTTLGCSLDLRL 268

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
255575128	190	nucleic acid binding protein, putative [	0.915	0.857	0.598	3e-51
224112835	179	predicted protein [Populus trichocarpa]	0.910	0.905	0.609	2e-48
224098312	177	predicted protein [Populus trichocarpa]	0.915	0.920	0.603	2e-47
225449611	176	PREDICTED: zinc finger protein ZAT12-lik	0.870	0.880	0.590	2e-45
356568969	175	PREDICTED: zinc finger protein ZAT11-lik	0.893	0.908	0.592	4e-42
351723355	180	uncharacterized protein LOC100500371 [Gl	0.898	0.888	0.561	6e-41
373839318	178	Cys2/His2-type zinc finger protein [Chry	0.926	0.926	0.543	3e-40
388502156	180	unknown [Lotus japonicus]	0.893	0.883	0.559	2e-39
388506426	180	unknown [Lotus japonicus]	0.904	0.894	0.548	2e-39
2346978	166	ZPT2-14 [Petunia x hybrida]	0.831	0.891	0.556	8e-39

>gi|255575128|ref|XP_002528469.1| nucleic acid binding protein, putative [Ricinus communis] gi|223532145|gb|EEF33952.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 129/182 (70%), Gaps = 19/182 (10%)

Query: 1   MKRAFQESSELDHSLNMANCLMFLSHGR------GFNAVNGVNTMAAGRAFECKTCNRQF 54
           MKR+F+E+ E+D SL+MANCLM LS GR       F A+ G N  ++ R FECKTCNRQF
Sbjct: 1   MKRSFREA-EID-SLSMANCLMLLSQGREIVSFPSFEAMKGTNINSSNRVFECKTCNRQF 58

Query: 55  PSFQALGGHRASHKKPRFTDGN-GGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH 113
           PSFQALGGHRASHKKPR T+G+ G ++ Q  P KPKTHECS+CGLEFAIGQALGGHMRRH
Sbjct: 59  PSFQALGGHRASHKKPRLTNGDVGSLETQSSPAKPKTHECSICGLEFAIGQALGGHMRRH 118

Query: 114 RAAG----------LHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFR 163
           RA               + +L  +       P++KK+NSR  LCLDLNLTPYEND+E FR
Sbjct: 119 RAINNDSSSLSTPSPTSSAELMAVKPAGVAPPVMKKSNSRRVLCLDLNLTPYENDVELFR 178

Query: 164 LG 165
           LG
Sbjct: 179 LG 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112835|ref|XP_002316305.1| predicted protein [Populus trichocarpa] gi|222865345|gb|EEF02476.1| predicted protein [Populus trichocarpa] gi|355477194|gb|AES12473.1| C2H2-type zinc finger protein 1 [Populus trichocarpa]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 125/174 (71%), Gaps = 12/174 (6%)

Query: 1   MKRAFQESSELDHSLNMANCLMFLSHGR---GFNAVN-GVNTMAAGRAFECKTCNRQFPS 56
           MKR   E  E+D S+ MANCLMFLS GR    F + +  ++ ++  R FECKTCNRQFPS
Sbjct: 1   MKRGLHER-EID-SITMANCLMFLSKGRESYSFPSFDHAMSNISPARVFECKTCNRQFPS 58

Query: 57  FQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA 116
           FQALGGHRASHKKPR   G G  + Q  P KPKTHECS+CGLEFAIGQALGGHMRRHRAA
Sbjct: 59  FQALGGHRASHKKPRLMGGEGSFETQS-PAKPKTHECSICGLEFAIGQALGGHMRRHRAA 117

Query: 117 GLHGNEKLSDLSGLSDK----APLVKKANSRGGLCLDLNLTPYENDLETFRLGN 166
            L+   ++  L+  S       P+VK++NSR  LCLDLNLTPYEND+E F+LG 
Sbjct: 118 -LNDRNQVDPLNPPSTDDQKAVPVVKRSNSRRVLCLDLNLTPYENDMELFKLGT 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098312|ref|XP_002311150.1| predicted protein [Populus trichocarpa] gi|222850970|gb|EEE88517.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 123/174 (70%), Gaps = 11/174 (6%)

Query: 1   MKRAFQESSELDHSLNMANCLMFLSHGR---GFNAVN-GVNTMAAGRAFECKTCNRQFPS 56
           MKR+   + E+D S+ MANCL+FLS GR    F + +  +N  +  R FECKTCNR+FPS
Sbjct: 1   MKRSLY-AREID-SITMANCLVFLSKGRESYSFPSFDHAINNNSPSRVFECKTCNRKFPS 58

Query: 57  FQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA 116
           FQALGGHRASHKKP+   G G  + Q  P KPKTHECS+CGLEFAIGQALGGHMRRHRAA
Sbjct: 59  FQALGGHRASHKKPKLMGGEGSFESQS-PAKPKTHECSICGLEFAIGQALGGHMRRHRAA 117

Query: 117 GLHGNEKLSDLSGLSDK----APLVKKANSRGGLCLDLNLTPYENDLETFRLGN 166
               N+    LS  S       P+VKK+NSR  LCLDLNLTP END+E F+LGN
Sbjct: 118 LNDQNQLADPLSPPSSDHKQVVPVVKKSNSRRVLCLDLNLTPNENDMELFKLGN 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449611|ref|XP_002284111.1| PREDICTED: zinc finger protein ZAT12-like [Vitis vinifera]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 119/166 (71%), Gaps = 11/166 (6%)

Query: 14  SLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFT 73
           S+++ANCLM LS G  ++++  V +    R FECKTCNRQFPSFQALGGHRASHKKPR  
Sbjct: 13  SVSIANCLMLLSRGTDYDSIARVPS----RVFECKTCNRQFPSFQALGGHRASHKKPRLM 68

Query: 74  --DGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLS--- 128
             +G+    +Q  P+KPKTHECS+CGLEFAIGQALGGHMRRHRAA     + LS+ +   
Sbjct: 69  ALNGDDPAQLQSSPLKPKTHECSICGLEFAIGQALGGHMRRHRAAASGATQALSETTSSS 128

Query: 129 -GLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVN 173
                +APL+KK NSR  LCLDLNLTP EN    F+LG KV S+V+
Sbjct: 129 SPPPPQAPLLKKPNSRRVLCLDLNLTPLENIDLQFQLG-KVASMVD 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568969|ref|XP_003552680.1| PREDICTED: zinc finger protein ZAT11-like [Glycine max]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 114/167 (68%), Gaps = 8/167 (4%)

Query: 5   FQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHR 64
            +   E+D SL MANCLM LS G  F A     +M+  R FECKTCNRQFPSFQALGGHR
Sbjct: 1   MKREREVD-SLTMANCLMLLSRGSEFEATYSSTSMS-NRVFECKTCNRQFPSFQALGGHR 58

Query: 65  ASHKKPRFTDGN-GGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN-- 121
           ASHKKPR   G+  G  +   P KPKTHECS+CGLEFAIGQALGGHMRRHRAA L+GN  
Sbjct: 59  ASHKKPRLMAGDIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNVH 118

Query: 122 ---EKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLG 165
                 S   G S  +   KKA+++  L LDLNLTP+ENDLE  ++G
Sbjct: 119 NSTATSSSSGGSSFDSSPKKKADNKRVLVLDLNLTPFENDLEFLKIG 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723355|ref|NP_001237020.1| uncharacterized protein LOC100500371 [Glycine max] gi|255630149|gb|ACU15428.1| unknown [Glycine max]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 112/171 (65%), Gaps = 11/171 (6%)

Query: 5   FQESSELDHSLNMANCLMFLSHG-RGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGH 63
            +   E+D SL MANCLM LS G   F A    +T    R FECKTCNRQFPSFQ LGGH
Sbjct: 1   MKREREVD-SLTMANCLMLLSRGGDQFEATYSSSTSMNNRVFECKTCNRQFPSFQTLGGH 59

Query: 64  RASHKKPRFTDGNG--GVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN 121
           RASHKKPR   G+   G  +   P KPKTHECS+CGLEFAIGQALGGHMRRHRAA L+GN
Sbjct: 60  RASHKKPRLMAGDNIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGN 119

Query: 122 EKLSDLSGLSDKAPLV-------KKANSRGGLCLDLNLTPYENDLETFRLG 165
              +  +  S  +          KKA+++  L LDLNLTP+ENDLE  ++G
Sbjct: 120 NVYNSATATSSSSGGSSFDSSPKKKADNKRVLVLDLNLTPFENDLEFLKIG 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373839318|gb|AEY76110.1| Cys2/His2-type zinc finger protein [Chrysanthemum x morifolium]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/182 (54%), Positives = 118/182 (64%), Gaps = 17/182 (9%)

Query: 1   MKRAFQESSELDHSLN-MANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQA 59
           MKR+     E D ++N MAN LM LS  RG   ++     +  R FECKTCNRQFPSFQA
Sbjct: 6   MKRS--RGDEFDTTINSMANYLMLLS--RGNTNMDSYQDDSVSRVFECKTCNRQFPSFQA 61

Query: 60  LGGHRASHKKPRFTDGNGGVDMQQ--LPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG 117
           LGGHRASHKKPR  DG+         L IKPKTH+CS+CG+EFAIGQALGGHMRRHRAA 
Sbjct: 62  LGGHRASHKKPRLVDGDMTSHHHDTALLIKPKTHKCSICGVEFAIGQALGGHMRRHRAAT 121

Query: 118 L---HGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVNL 174
               H +  L DLS      P+VKK NSR    LDLNLTP END E FR+ ++  + + +
Sbjct: 122 TTENHASLPL-DLS-----TPVVKKVNSRRVFSLDLNLTPLENDFE-FRVDDEKVTPITV 174

Query: 175 EL 176
           + 
Sbjct: 175 DF 176

Source: Chrysanthemum x morifolium

Species: Chrysanthemum x morifolium

Genus: Chrysanthemum

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502156|gb|AFK39144.1| unknown [Lotus japonicus]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 110/177 (62%), Gaps = 18/177 (10%)

Query: 10  ELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKK 69
           E+D S+ MANCLM LS G  F          + R FECKTCNRQF SFQALGGHRASHKK
Sbjct: 6   EID-SMTMANCLMLLSQGGEFETTTTSTYSPS-RVFECKTCNRQFSSFQALGGHRASHKK 63

Query: 70  PRFTDGNGGVDMQQL-----PIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKL 124
           PR   GNG  DM+ L     P KPKTHECS+CGLEFAIGQALGGHMRRHRA  L GN   
Sbjct: 64  PRLMAGNG--DMELLHGSSSPPKPKTHECSICGLEFAIGQALGGHMRRHRAENLSGNMMQ 121

Query: 125 SDLSGLSDKAPL--------VKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVN 173
           S  +                V KA  +  L LDLNLTP+ENDLE  ++G K   LV+
Sbjct: 122 SSTTISCSSGGSSLDSSPKNVMKAYKKIVLALDLNLTPFENDLEFLKIG-KATGLVD 177

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506426|gb|AFK41279.1| unknown [Lotus japonicus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 108/175 (61%), Gaps = 14/175 (8%)

Query: 10  ELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKK 69
           E+D S+ MANCLM LS G  F          + R FECKTCNRQF SFQALGGHRASHKK
Sbjct: 6   EID-SMTMANCLMLLSQGGEFETTTTSTYSPS-RVFECKTCNRQFSSFQALGGHRASHKK 63

Query: 70  PRFTDGNGGVDM---QQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSD 126
           PR   GNG  ++      P KPKTHECS+CGLEFAIGQALGGHMRRHRA  L GN   S 
Sbjct: 64  PRLMAGNGDTELLHGSSSPPKPKTHECSICGLEFAIGQALGGHMRRHRAENLSGNMMQSS 123

Query: 127 LSGLSDKAPL--------VKKANSRGGLCLDLNLTPYENDLETFRLGNKVDSLVN 173
            +                V KA  +  L LDLNLTP+ENDLE  ++G K   LV+
Sbjct: 124 TTMSCSSGGSSLDSSPKNVMKAYKKIVLALDLNLTPFENDLEFLKIG-KATGLVD 177

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2346978|dbj|BAA21923.1| ZPT2-14 [Petunia x hybrida]

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 101/160 (63%), Gaps = 12/160 (7%)

Query: 6   QESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRA 65
           +  +E      MAN LM  SH    N  N +   +  R FECKTCNRQF SFQALGGHRA
Sbjct: 9   EREAEFKSITTMANYLMLFSHQE--NHFNTMMDNSPSRVFECKTCNRQFSSFQALGGHRA 66

Query: 66  SHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLS 125
           SHKKPR   G     +   P KPKTHECS+CGLEF IGQALGGHMRRHRA     N +++
Sbjct: 67  SHKKPRLM-GELNFQLPTSPPKPKTHECSICGLEFPIGQALGGHMRRHRAVMNENNLQVT 125

Query: 126 DLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDLETFRLG 165
                    P+VKK+NSR  LCLDLNLTP END   F+LG
Sbjct: 126 ---------PVVKKSNSRRVLCLDLNLTPLENDNLEFKLG 156

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2054548	156	AT2G28710 "AT2G28710" [Arabido	0.797	0.910	0.456	4.4e-29
TAIR|locus:2049811	178	ZAT11 "AT2G37430" [Arabidopsis	0.876	0.876	0.436	5.7e-27
TAIR|locus:2168073	162	RHL41 "AT5G59820" [Arabidopsis	0.859	0.944	0.426	8.7e-24
TAIR|locus:2179924	362	AT5G04390 "AT5G04390" [Arabido	0.370	0.182	0.457	4.3e-23
TAIR|locus:2084046	175	AT3G53600 "AT3G53600" [Arabido	0.842	0.857	0.397	7.8e-23
TAIR|locus:2075865	398	AT3G10470 "AT3G10470" [Arabido	0.398	0.178	0.432	7.9e-23
TAIR|locus:2046153	286	AT2G28200 "AT2G28200" [Arabido	0.151	0.094	0.888	1.1e-20
TAIR|locus:2142674	292	AT5G03510 "AT5G03510" [Arabido	0.404	0.246	0.44	2.3e-20
TAIR|locus:2075261	170	AT3G46070 "AT3G46070" [Arabido	0.831	0.870	0.408	4.4e-20
TAIR|locus:2075291	168	ZAT7 "AT3G46090" [Arabidopsis	0.752	0.797	0.433	9.2e-20

TAIR|locus:2054548 AT2G28710 "AT2G28710" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 74/162 (45%), Positives = 98/162 (60%)

Query:     9 SELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK 68
             S+++   NMANCL+ LS        N   +    R F CKTCN++FPSFQALGGHRASH+
Sbjct:     6 SDMEMINNMANCLILLSKAHQ----NDTKS----RVFACKTCNKEFPSFQALGGHRASHR 57

Query:    69 KPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRA-AGLHGNEKLSDL 127
             +    +G+     ++  +KP  HEC +CG EFA+GQALGGHMR+HR  +G  G   L+  
Sbjct:    58 RSAALEGHAPPSPKR--VKPVKHECPICGAEFAVGQALGGHMRKHRGGSGGGGGRSLAPA 115

Query:   128 SGLSDKAPL-VKKANSRGG---LCLDLNLTPYENDLETFRLG 165
             +     AP+ +KK+    G   LCLDLNLTP EN+     LG
Sbjct:   116 T-----APVTMKKSGGGNGKRVLCLDLNLTPLENEDLKLELG 152

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2049811 ZAT11 "AT2G37430" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 72/165 (43%), Positives = 95/165 (57%)

Query:     1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRA---FECKTCNRQFPSF 57
             MKR   +  E   ++++A CLM L+       + G+N          FECKTCN++F SF
Sbjct:     1 MKRERSDFEESLKNIDIAKCLMILAQTSMVKQI-GLNQHTESHTSNQFECKTCNKRFSSF 59

Query:    58 QALGGHRASHKKPRFTDGNGGVDMQQLPIKPKT-HECSVCGLEFAIGQALGGHMRRHRAA 116
             QALGGHRASHKKP+ T     V       K    H+CS+C   F  GQALGGHMRRHR++
Sbjct:    60 QALGGHRASHKKPKLTVEQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSS 119

Query:   117 GLHGNEKLSDLSGLSDKAPLVKKA-NSRGGLCLDLNLTPYENDLE 160
                   + S +S +    P++K+  +S+  L LDLNLTP ENDLE
Sbjct:   120 M---TVEPSFISPMIPSMPVLKRCGSSKRILSLDLNLTPLENDLE 161

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2168073 RHL41 "AT5G59820" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 70/164 (42%), Positives = 96/164 (58%)

Query:     9 SELDHSLNM--ANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRAS 66
             SE+  ++++  ANCLM LS   G   V+G +     R F CKTC +QF SFQALGGHRAS
Sbjct:     5 SEIKSTVDVTAANCLMLLSRV-GQENVDGGDQK---RVFTCKTCLKQFHSFQALGGHRAS 60

Query:    67 HKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHR-AAGLHGNEKLS 125
             HKKP     + G+ M++  +K  +H C +CG+EF +GQALGGHMRRHR  +G  G   ++
Sbjct:    61 HKKPNNDALSSGL-MKK--VKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVT 117

Query:   126 DLSGLSDKAPLVKKANS-RGGLCLDLNLTPYENDLETFRLGNKV 168
                        +KK++S +   CLDL+L   +N      LG  V
Sbjct:   118 RALLPEPTVTTLKKSSSGKRVACLDLSLGMVDNLNLKLELGRTV 161

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009643 "photosynthetic acclimation" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009631 "cold acclimation" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0006979 "response to oxidative stress" evidence=IEP;RCA;IMP

GO:0009408 "response to heat" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009611 "response to wounding" evidence=IEP;RCA;IMP

GO:0042538 "hyperosmotic salinity response" evidence=IEP;RCA;IMP

GO:0010224 "response to UV-B" evidence=IEP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2179924 AT5G04390 "AT5G04390" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
 Identities = 32/70 (45%), Positives = 42/70 (60%)

Query:    16 NMANCLMFLSHGRGFNAVNGVNTMA-AGR-AFECKTCNRQFPSFQALGGHRASHKKPRFT 73
             N  N   F S  R F   +  N+   AG   ++CKTC+R FPSFQALGGHRASHKKP+  
Sbjct:   124 NNNNTYRFTS--RRFLETSSSNSGGKAGYYVYQCKTCDRTFPSFQALGGHRASHKKPKAA 181

Query:    74 DGNGGVDMQQ 83
                  +D+++
Sbjct:   182 SFYSNLDLKK 191

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2084046 AT3G53600 "AT3G53600" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 66/166 (39%), Positives = 92/166 (55%)

Query:     1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAA----GRAFECKTCNRQFPS 56
             MKR   +  E    +++   LM LS       ++   +  +       FECKTCNR+F S
Sbjct:     1 MKRDRSDYEESMKHIDIVESLMMLSRSFVVKQIDVKQSTGSKTNHNNHFECKTCNRKFDS 60

Query:    57 FQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKT---HECSVCGLEFAIGQALGGHMRRH 113
             FQALGGHRASHKKP+       VD +Q+  + K    H+C++C   F  GQALGGHMR+H
Sbjct:    61 FQALGGHRASHKKPKLI-----VDQEQVKHRNKENDMHKCTICDQMFGTGQALGGHMRKH 115

Query:   114 RAAGLHGNEKLSDLSGLSDKAPLVKKANSRGGLCLDLNLTPYENDL 159
             R + +   E+ S +  +    P+  + +S   + LDLNLTP ENDL
Sbjct:   116 RTSMI--TEQ-SIVPSVVYSRPVFNRCSSSKEI-LDLNLTPLENDL 157

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2075865 AT3G10470 "AT3G10470" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
 Identities = 32/74 (43%), Positives = 44/74 (59%)

Query:     4 AFQESSELDHSLNMANCLMFL--SHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALG 61
             ++Q+S   +++   ++   FL  S   G    NG    A    ++CKTC+R FPSFQALG
Sbjct:   140 SYQDSGNNNNNAYRSSSRRFLETSSSNG-TTTNGGGGRAGYYVYQCKTCDRTFPSFQALG 198

Query:    62 GHRASHKKPRFTDG 75
             GHRASHKKP+   G
Sbjct:   199 GHRASHKKPKAAMG 212

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2046153 AT2G28200 "AT2G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 24/27 (88%), Positives = 25/27 (92%)

Query:    45 FECKTCNRQFPSFQALGGHRASHKKPR 71
             +ECKTCNR F SFQALGGHRASHKKPR
Sbjct:   115 YECKTCNRTFSSFQALGGHRASHKKPR 141

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2142674 AT5G03510 "AT5G03510" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 33/75 (44%), Positives = 45/75 (60%)

Query:    87 KP-KTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSGLSDKAPLVKKANSR-- 143
             KP KTHECS+C  EF+ GQALGGHMRRHR   ++ N   +  + +S  +    + + R  
Sbjct:   187 KPEKTHECSICKAEFSSGQALGGHMRRHRGLTINANATSAIKTAISSSSHHHHEESIRPK 246

Query:   144 GGLCLDLNLTPYEND 158
               L LDLNL   E++
Sbjct:   247 NFLQLDLNLPAPEDE 261

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2075261 AT3G46070 "AT3G46070" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 71/174 (40%), Positives = 93/174 (53%)

Query:     7 ESSELDHSLNMA-NCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRA 65
             ES   D +++ A +CLM LS   G    +G       R F CKTC R F SFQALGGHRA
Sbjct:     4 ESDNRDLTVDTAASCLMLLS---GIGEHDGRKK----RVFRCKTCERDFDSFQALGGHRA 56

Query:    66 SHKKPRFTDGNGGVDMQQLPIKPKT------HECSVCGLEFAIGQALGGHMRRHRAAGLH 119
             SH K   +D        +   KPKT      H C +CGLEF +GQALGGHMR+HR     
Sbjct:    57 SHSKLTNSDDKSLPGSPKK--KPKTTTTTTAHTCPICGLEFPMGQALGGHMRKHRNE--K 112

Query:   120 GNEKLSDL----SGLSDKAPL--VKKANS-RGGLCLDLNLTPYENDLET-FRLG 165
               EK S++    S + +   +  +KK++S +   CLD +LT  E+ + T   LG
Sbjct:   113 EREKASNVLVTHSFMPETTTVTTLKKSSSGKRVACLDFDLTSVESFVNTELELG 166

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2075291 ZAT7 "AT3G46090" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 62/143 (43%), Positives = 78/143 (54%)

Query:    18 ANCLMFLSH-GRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGN 76
             A CLM LS  G       G       R F CKTC ++F SFQALGGHRASHKK   +D N
Sbjct:    17 AKCLMLLSRVGECGGGCGGDE-----RVFRCKTCLKEFSSFQALGGHRASHKKLINSD-N 70

Query:    77 GGVDMQQLPIKPKT-HECSVCGLEFAIGQALGGHMRRHRAAGLHGN-EKLSDLSGLSDKA 134
               +       K KT H C +CG++F +GQALGGHMRRHR   + G+    S L   +   
Sbjct:    71 PSLLGSLSNKKTKTSHPCPICGVKFPMGQALGGHMRRHRNEKVSGSLVTRSFLPETTTVT 130

Query:   135 PLVKKANSRGGLCLDLNLTPYEN 157
              L K ++ +   CLDL+L   E+
Sbjct:   131 ALKKFSSGKRVACLDLDLDSMES 153

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045926 "negative regulation of growth" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SLD4	ZAT11_ARATH	No assigned EC number	0.4371	0.8651	0.8651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0022029401 hypothetical protein (179 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	4e-06
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	5e-04

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 41.4 bits (98), Expect = 4e-06
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 45 FECKTCNRQFPSFQALGGHRASHKKP 70
            C  C + F S QALGGH+ SH   
Sbjct: 2  HTCGVCGKTFSSLQALGGHKKSHCSL 27

Length = 27

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 90  THECSVCGLEFAIGQALGGHMRRHRAA 116
            H C VCG  F+  QALGGH + H + 
Sbjct: 1   VHTCGVCGKTFSSLQALGGHKKSHCSL 27

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.91
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.87
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.7
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.68
KOG3576	267	consensus Ovo and related transcription factors [T	99.56
KOG3608	467	consensus Zn finger proteins [General function pre	99.55
KOG3576	267	consensus Ovo and related transcription factors [T	99.49
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.43
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.41
PHA00733	128	hypothetical protein	99.38
KOG3608	467	consensus Zn finger proteins [General function pre	99.07
PHA02768	55	hypothetical protein; Provisional	99.02
PHA02768	55	hypothetical protein; Provisional	98.96
KOG3993	500	consensus Transcription factor (contains Zn finger	98.79
PHA00733	128	hypothetical protein	98.72
PLN03086	567	PRLI-interacting factor K; Provisional	98.65
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.6
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.57
PLN03086	567	PRLI-interacting factor K; Provisional	98.55
PHA00616	44	hypothetical protein	98.48
KOG3993	500	consensus Transcription factor (contains Zn finger	98.47
PHA00732	79	hypothetical protein	98.43
PHA00616	44	hypothetical protein	98.23
PHA00732	79	hypothetical protein	98.07
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.05
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.0
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.95
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.76
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.69
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.59
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.49
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.44
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.41
smart00355	26	ZnF_C2H2 zinc finger.	97.35
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.35
smart00355	26	ZnF_C2H2 zinc finger.	97.1
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.05
PRK04860	160	hypothetical protein; Provisional	96.77
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.75
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.7
PRK04860	160	hypothetical protein; Provisional	96.65
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.64
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.51
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.23
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.05
KOG1146	1406	consensus Homeobox protein [General function predi	95.67
COG5048	467	FOG: Zn-finger [General function prediction only]	95.6
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.59
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.33
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.29
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.99
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.36
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.91
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.31
COG5048	467	FOG: Zn-finger [General function prediction only]	92.74
KOG1146	1406	consensus Homeobox protein [General function predi	92.68
KOG2893	341	consensus Zn finger protein [General function pred	91.66
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.75
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	84.45
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	84.33
COG5236	493	Uncharacterized conserved protein, contains RING Z	82.98
COG4049	65	Uncharacterized protein containing archaeal-type C	80.82

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.91  E-value=3.1e-25  Score=167.50  Aligned_cols=116  Identities=22%  Similarity=0.308  Sum_probs=107.5

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCC---CCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCC--------cc
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMA---AGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGG--------VD   80 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~---~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~--------~~   80 (178)
                      ...|.|..|||.+++..+|.  +|..+|-   ..+.+.|++|||.|.+...|+.|+++|+-.-.|..|++        ..
T Consensus       128 ~~r~~c~eCgk~ysT~snLs--rHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLS--RHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             CCceeccccccccccccccc--hhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhc
Confidence            57899999999999999996  8999986   46789999999999999999999999997777999987        78


Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCCcccCcC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSG  129 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~  129 (178)
                      |+++|+|||||.|..|+|.|+..++|+.||++|.+.|.|.|..+...++
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs  254 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA  254 (279)
T ss_pred             ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence            9999999999999999999999999999999999999999998876554

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.87  E-value=1.6e-23  Score=158.26  Aligned_cols=108  Identities=22%  Similarity=0.325  Sum_probs=79.7

Q ss_pred             CcccccccCCC--CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCC--CCCC
Q 044181            1 MKRAFQESSEL--DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRF--TDGN   76 (178)
Q Consensus         1 lkr~~~~~~~~--~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~--~~~c   76 (178)
                      |-||+..|-..  .+-+.|..|+|+|..-..|  +.|+++|+  -+++|.+|||.|.++|-|+.|+|+|+||+|  |..|
T Consensus       146 LsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpAL--kMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC  221 (279)
T KOG2462|consen  146 LSRHKQTHRSLDSKKAFSCKYCGKVYVSMPAL--KMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHC  221 (279)
T ss_pred             cchhhcccccccccccccCCCCCceeeehHHH--hhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcc
Confidence            34666666332  4556777777777766666  37777776  567777777777777777777777777776  6666


Q ss_pred             CC--------ccccccCCCCCCCcCCcccccCCCchHHHHHHhh
Q 044181           77 GG--------VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        77 ~~--------~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      ++        +-||++|.+.|+|+|..|+|+|+..++|.+|...
T Consensus       222 ~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  222 GKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            55        5677777799999999999999999999999753

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.70  E-value=1.9e-18  Score=146.58  Aligned_cols=53  Identities=17%  Similarity=0.390  Sum_probs=49.1

Q ss_pred             ccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           14 SLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        14 ~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      +.+|..|.|+|.....|+  +|+|+||||+||+|.+||..|..+.+|+.|...|+
T Consensus       353 khkCr~CakvfgS~SaLq--iHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQ--IHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             cchhhhhHhhcCchhhhh--hhhhccCCCCCeeecccccccccccceeeeeeecc
Confidence            348999999999999996  99999999999999999999999999999987664

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.68  E-value=9.1e-18  Score=140.71  Aligned_cols=90  Identities=17%  Similarity=0.308  Sum_probs=80.6

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTH   91 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~   91 (178)
                      +..|.|+.|.|+|...+.|.  +|.--|+|.+||+|.+|.|+|+.+..|..|+|.|+                  |||||
T Consensus       892 ~gmyaCDqCDK~FqKqSSLa--RHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHS------------------GEKPf  951 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLA--RHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHS------------------GEKPF  951 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHH--HhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhcc------------------CCCcc
Confidence            78999999999999999995  99999999999999999999999999999999887                  79999


Q ss_pred             cCCcccccCCCchHHHHHHhh-hccCCCCCC
Q 044181           92 ECSVCGLEFAIGQALGGHMRR-HRAAGLHGN  121 (178)
Q Consensus        92 ~C~~Cgk~F~~~~~L~~H~~~-H~~~~~~~~  121 (178)
                      +|+.|+|.|+.+++...||.- .+--|+|..
T Consensus       952 QCdKClKRFSHSGSYSQHMNHRYSYCKpyrE  982 (1007)
T KOG3623|consen  952 QCDKCLKRFSHSGSYSQHMNHRYSYCKPYRE  982 (1007)
T ss_pred             hhhhhhhhcccccchHhhhccchhcccchhh
Confidence            999999999999999999962 333344443

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.56  E-value=2e-16  Score=115.07  Aligned_cols=98  Identities=21%  Similarity=0.304  Sum_probs=80.5

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTH   91 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~   91 (178)
                      .-.|.|.+|+|.|+-..-|.  +|+..|...+.|-|..|||.|...-.|++|.++|+                  |.+||
T Consensus       115 ~d~ftCrvCgK~F~lQRmln--rh~kch~~vkr~lct~cgkgfndtfdlkrh~rtht------------------gvrpy  174 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLN--RHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHT------------------GVRPY  174 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHH--HHhhhccHHHHHHHhhccCcccchhhhhhhhcccc------------------Ccccc
Confidence            56788888888888877775  88888888888888888888888888888888776                  79999


Q ss_pred             cCCcccccCCCchHHHHHHh-hhc----------cCCCCCCCCcccCcC
Q 044181           92 ECSVCGLEFAIGQALGGHMR-RHR----------AAGLHGNEKLSDLSG  129 (178)
Q Consensus        92 ~C~~Cgk~F~~~~~L~~H~~-~H~----------~~~~~~~~~~~~~~~  129 (178)
                      +|..|+|.|++.-+|..|.+ +|.          ..+.|.|+.++-.+.
T Consensus       175 kc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~  223 (267)
T KOG3576|consen  175 KCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSE  223 (267)
T ss_pred             chhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCC
Confidence            99999999999999999975 554          347788888764333

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.55  E-value=3.3e-16  Score=122.15  Aligned_cols=120  Identities=15%  Similarity=0.239  Sum_probs=104.8

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccc--cCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCC
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVN--TMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGG   78 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~--~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~   78 (178)
                      |++|.+.||+ |+-..|..||.+|+++..|-  .|++  +-....+|.|..|.|.|.....|..|+..|..-+.|..|++
T Consensus       195 LreH~r~Hs~-eKvvACp~Cg~~F~~~tkl~--DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdm  271 (467)
T KOG3608|consen  195 LREHIRTHSN-EKVVACPHCGELFRTKTKLF--DHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDM  271 (467)
T ss_pred             HHHHHHhcCC-CeEEecchHHHHhccccHHH--HHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccccccccc
Confidence            6789999999 99999999999999999886  5554  44456799999999999999999999999988777877765


Q ss_pred             --------cccccc-CCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCCc
Q 044181           79 --------VDMQQL-PIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKL  124 (178)
Q Consensus        79 --------~~h~~~-h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~  124 (178)
                              ..|++. |+.+|||+|+.|++.|.+.+.|.+|..+|+ +..|.|+-+
T Consensus       272 tc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~  325 (467)
T KOG3608|consen  272 TCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHP  325 (467)
T ss_pred             CCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCC
Confidence                    678886 999999999999999999999999999998 667887663

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.49  E-value=2.6e-15  Score=109.26  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=85.0

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCcc
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVD   80 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~   80 (178)
                      |-||.+.|++ .+.|-|..|||.|.....|  ++|+++|||-+||+|..|+|+|....+|..|.+.-.|..         
T Consensus       133 lnrh~kch~~-vkr~lct~cgkgfndtfdl--krh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~---------  200 (267)
T KOG3576|consen  133 LNRHLKCHSD-VKRHLCTFCGKGFNDTFDL--KRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQ---------  200 (267)
T ss_pred             HHHHhhhccH-HHHHHHhhccCcccchhhh--hhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCch---------
Confidence            4689999977 9999999999999988777  699999999999999999999999999999976432211         


Q ss_pred             cccc--CCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           81 MQQL--PIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        81 h~~~--h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      |+-.  ...+|-|.|+.||.+-.....+-.|.+.|...
T Consensus       201 ~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  201 HQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            1100  11467899999999888888888898876644

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.43  E-value=1.2e-14  Score=123.75  Aligned_cols=89  Identities=26%  Similarity=0.426  Sum_probs=79.7

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTH   91 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~   91 (178)
                      ..|.+|.+|.++++....|+  .|.|+|+|||||+|.+||++|..+.||+.|+-+|....+              -.-.|
T Consensus       603 TdPNqCiiC~rVlSC~saLq--mHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~--------------~R~q~  666 (958)
T KOG1074|consen  603 TDPNQCIICLRVLSCPSALQ--MHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPP--------------ARVQF  666 (958)
T ss_pred             CCccceeeeeecccchhhhh--hhhhcccCcCccccccccchhccccchhhcccccccCcc--------------ccccc
Confidence            67899999999999999996  999999999999999999999999999999999963221              23468


Q ss_pred             cCC---cccccCCCchHHHHHHhhhccC
Q 044181           92 ECS---VCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        92 ~C~---~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .|+   +|-+.|.....|..|+++|.+.
T Consensus       667 ScP~~~ic~~kftn~V~lpQhIriH~~~  694 (958)
T KOG1074|consen  667 SCPSTFICQKKFTNAVTLPQHIRIHLGG  694 (958)
T ss_pred             cCCchhhhcccccccccccceEEeecCC
Confidence            999   9999999999999999999954

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.41  E-value=2.1e-14  Score=120.89  Aligned_cols=81  Identities=20%  Similarity=0.377  Sum_probs=70.0

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCC-------------CCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMA-------------AGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGG   78 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~-------------~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~   78 (178)
                      +.-|.|..|...|.....|.  +|+.+|.             +.+.|+|.+|||+|+.+..|+.|+|+|+          
T Consensus       238 e~nfsC~lCsytFAyRtQLE--rhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHS----------  305 (1007)
T KOG3623|consen  238 EPNFSCMLCSYTFAYRTQLE--RHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHS----------  305 (1007)
T ss_pred             CCCCcchhhhhhhhhHHHHH--HHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeec----------
Confidence            56788999999999888886  8887774             3467999999999999999988888877          


Q ss_pred             ccccccCCCCCCCcCCcccccCCCchHHHHHHhh
Q 044181           79 VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        79 ~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                              |||||.|+.|+|.|+.+++...||-.
T Consensus       306 --------GEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  306 --------GEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             --------CCCCcCCcccccccccCCcccccccc
Confidence                    79999999999999999999999853

>PHA00733 hypothetical protein

Probab=99.38  E-value=6.5e-13  Score=92.25  Aligned_cols=84  Identities=19%  Similarity=0.286  Sum_probs=70.5

Q ss_pred             CcccchhhhHHHhcCCCCCCcc----cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAV----NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIK   87 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~----~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~   87 (178)
                      .+++.|++|.+.|.....|..+    .|+.++ +++||.|+.|++.|....+|..|++.|.                   
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h~-------------------   97 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYTE-------------------   97 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcCC-------------------
Confidence            6899999999999988777533    343444 5889999999999999999999998652                   


Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                       .+|.|..|++.|.....|..|+....+.
T Consensus        98 -~~~~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         98 -HSKVCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             -cCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence             3699999999999999999999866554

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.07  E-value=1.4e-11  Score=96.50  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=69.7

Q ss_pred             ccchhhhHHHhcCCCCCCccccccc-CCCCCceecCcCCCcCCChHHHHHHHHhcCCC-CCCCC--CCC--------ccc
Q 044181           14 SLNMANCLMFLSHGRGFNAVNGVNT-MAAGRAFECKTCNRQFPSFQALGGHRASHKKP-RFTDG--NGG--------VDM   81 (178)
Q Consensus        14 ~~~C~~C~~~f~~~~~l~~~~h~~~-H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~~~--c~~--------~~h   81 (178)
                      -|.|+.|.+..+..+.|.  +|++. |+.+|||+|+.|++.|...+.|++|..+|+.. +.|+-  |..        ..|
T Consensus       263 ~ykCplCdmtc~~~ssL~--~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H  340 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLT--THIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRH  340 (467)
T ss_pred             cccccccccCCCChHHHH--HHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHH
Confidence            344444444444444443  55544 77788999999999999999999998888743 23533  543        455


Q ss_pred             cc-cCCC--CCCCcCCcccccCCCchHHHHHHh-hhccCCC
Q 044181           82 QQ-LPIK--PKTHECSVCGLEFAIGQALGGHMR-RHRAAGL  118 (178)
Q Consensus        82 ~~-~h~~--~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~  118 (178)
                      ++ .|.|  +-+|.|-.|++.|++..+|..|.. .|.-.-|
T Consensus       341 ~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~P  381 (467)
T KOG3608|consen  341 FLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLP  381 (467)
T ss_pred             HHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCC
Confidence            54 3545  456999999999999999999975 4543333

>PHA02768 hypothetical protein; Provisional

Probab=99.02  E-value=1.6e-10  Score=67.49  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=39.3

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHH
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALG  107 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~  107 (178)
                      -|.|++||+.|...++|..|+++|+                    ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--------------------k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--------------------TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--------------------CcccCCcccceecccceeE
Confidence            4899999999999999999999984                    5799999999999887764

>PHA02768 hypothetical protein; Provisional

Probab=98.96  E-value=2.7e-11  Score=70.70  Aligned_cols=44  Identities=7%  Similarity=0.058  Sum_probs=40.2

Q ss_pred             ccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHH
Q 044181           14 SLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALG   61 (178)
Q Consensus        14 ~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~   61 (178)
                      .|+|+.||+.|++..+|+  .|+++|+  ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~--~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMI--THLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHH--HHHHhcC--CcccCCcccceecccceeE
Confidence            589999999999999996  9999999  7999999999999877664

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.79  E-value=1.7e-09  Score=86.75  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=73.7

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCC---CCCC-C---------
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFT---DGNG-G---------   78 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~---~~c~-~---------   78 (178)
                      .++|-|..|...|.....|.  .|.-.-.-.-.|+|.+|+|.|+...||..|+|+|.-...-   +.-. +         
T Consensus       265 iGdyiCqLCK~kYeD~F~LA--QHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~  342 (500)
T KOG3993|consen  265 IGDYICQLCKEKYEDAFALA--QHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV  342 (500)
T ss_pred             HHHHHHHHHHHhhhhHHHHh--hccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence            56899999999999887785  6654333344699999999999999999999999522110   0000 0         


Q ss_pred             cccccc--CCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           79 VDMQQL--PIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        79 ~~h~~~--h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      +.-.+.  ...+--|.|.+|+|.|.+..+|+.|+-+|...
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence            000000  12234799999999999999999998887644

>PHA00733 hypothetical protein

Probab=98.72  E-value=2.3e-09  Score=74.49  Aligned_cols=61  Identities=13%  Similarity=0.247  Sum_probs=51.3

Q ss_pred             cccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181            2 KRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus         2 kr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .+|...+ + +++|.|..||+.|.+...|.  .|+++|  +.+|.|..|++.|.....|..|+....
T Consensus        63 ~~~~~~~-~-~kPy~C~~Cgk~Fss~s~L~--~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         63 YKLLTSK-A-VSPYVCPLCLMPFSSSVSLK--QHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             HhhcccC-C-CCCccCCCCCCcCCCHHHHH--HHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            4555555 3 79999999999999999985  888877  457999999999999999999988654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.65  E-value=3e-08  Score=83.75  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=62.3

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCC-------ccccccCCCCCCCcCCcccccCCC----------chH
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGG-------VDMQQLPIKPKTHECSVCGLEFAI----------GQA  105 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~-------~~h~~~h~~~k~~~C~~Cgk~F~~----------~~~  105 (178)
                      +++.|+.|++.|. ...|..|+++|+.+..|. |+.       ..|+.+|.+.+++.|..|++.|..          ...
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~  529 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRG  529 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHHhcCCCccCC-CCCCcchhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhh
Confidence            3458888988885 577888888876666677 765       567778888999999999998852          347


Q ss_pred             HHHHHhhhccCCCCCCCCccc
Q 044181          106 LGGHMRRHRAAGLHGNEKLSD  126 (178)
Q Consensus       106 L~~H~~~H~~~~~~~~~~~~~  126 (178)
                      |..|..++ |.+++.|..++.
T Consensus       530 Lt~HE~~C-G~rt~~C~~Cgk  549 (567)
T PLN03086        530 MSEHESIC-GSRTAPCDSCGR  549 (567)
T ss_pred             HHHHHHhc-CCcceEccccCC
Confidence            88898885 888888876643

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.60  E-value=1.9e-08  Score=50.25  Aligned_cols=17  Identities=29%  Similarity=0.636  Sum_probs=15.0

Q ss_pred             CCCCCCcCCcccccCCC
Q 044181           86 IKPKTHECSVCGLEFAI  102 (178)
Q Consensus        86 ~~~k~~~C~~Cgk~F~~  102 (178)
                      +|++||.|++|++.|.+
T Consensus        10 ~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen   10 TGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             SSSSSEEESSSSEEESS
T ss_pred             CCCCCCCCCCCcCeeCc
Confidence            37999999999999974

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.57  E-value=5.6e-09  Score=52.20  Aligned_cols=24  Identities=17%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             ccccccCCCCCceecCcCCCcCCC
Q 044181           33 VNGVNTMAAGRAFECKTCNRQFPS   56 (178)
Q Consensus        33 ~~h~~~H~~~k~~~C~~C~k~f~~   56 (178)
                      .+|+++|+|++||.|++|++.|.+
T Consensus         3 ~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    3 RRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHhhhcCCCCCCCCCCCcCeeCc
Confidence            378999999999999999998863

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.55  E-value=2.1e-08  Score=84.63  Aligned_cols=95  Identities=15%  Similarity=0.311  Sum_probs=73.3

Q ss_pred             CCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCC--CCCCCC----------
Q 044181           11 LDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRF--TDGNGG----------   78 (178)
Q Consensus        11 ~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~--~~~c~~----------   78 (178)
                      +++.+.|..|++.|. ...|.  .|+.+|.  +++.|+ ||+.+ ....|..|+.+|...++  |..|++          
T Consensus       450 l~~H~~C~~Cgk~f~-~s~Le--kH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d  522 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEME--KHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMD  522 (567)
T ss_pred             cccCccCCCCCCccc-hHHHH--HHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccc
Confidence            467789999999996 45674  8988875  799999 99766 56899999999976665  888865          


Q ss_pred             --------ccccccCCCCCCCcCCcccccCCCchHHHHHHh-hhc
Q 044181           79 --------VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMR-RHR  114 (178)
Q Consensus        79 --------~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~  114 (178)
                              ..|.... |.+++.|..||+.|.. ..|..|+. +|.
T Consensus       523 ~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrl-rdm~~H~~~~h~  565 (567)
T PLN03086        523 VRDRLRGMSEHESIC-GSRTAPCDSCGRSVML-KEMDIHQIAVHQ  565 (567)
T ss_pred             hhhhhhhHHHHHHhc-CCcceEccccCCeeee-hhHHHHHHHhhc
Confidence                    2355554 8999999999999964 56677764 443

>PHA00616 hypothetical protein

Probab=98.48  E-value=5.6e-08  Score=54.10  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      ||+|..||+.|.+.+.|..|++.|+|++++.++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            699999999999999999999999999877664

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.47  E-value=8.4e-08  Score=77.17  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=47.9

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCC--------CCC-------------------------ceecCcCCCcCCChH
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMA--------AGR-------------------------AFECKTCNRQFPSFQ   58 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~--------~~k-------------------------~~~C~~C~k~f~~~~   58 (178)
                      -.+|+|.+|+|+|+.-.+|.  .|.|.|.        +..                         -|.|.+|+|.|.+..
T Consensus       293 ~vEYrCPEC~KVFsCPANLA--SHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqA  370 (500)
T KOG3993|consen  293 HVEYRCPECDKVFSCPANLA--SHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQA  370 (500)
T ss_pred             EeeecCCcccccccCchhhh--hhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHH
Confidence            36899999999999999996  8999884        222                         389999999999999


Q ss_pred             HHHHHHHhcC
Q 044181           59 ALGGHRASHK   68 (178)
Q Consensus        59 ~L~~H~~~h~   68 (178)
                      .|+.|+.+|.
T Consensus       371 YLrKHqlthq  380 (500)
T KOG3993|consen  371 YLRKHQLTHQ  380 (500)
T ss_pred             HHHHhHHhhh
Confidence            9999998883

>PHA00732 hypothetical protein

Probab=98.43  E-value=1.8e-07  Score=59.45  Aligned_cols=46  Identities=26%  Similarity=0.561  Sum_probs=34.8

Q ss_pred             ceecCcCCCcCCChHHHHHHHHh-cCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhh
Q 044181           44 AFECKTCNRQFPSFQALGGHRAS-HKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      ||.|..|++.|.+..+|..|++. |.                     ++.|+.||+.|.   .|..|.+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---------------------~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---------------------LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---------------------CCccCCCCCEeC---Chhhhhccc
Confidence            57888999999888888888874 43                     257888888887   466776543

>PHA00616 hypothetical protein

Probab=98.23  E-value=4.5e-07  Score=50.49  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ||+|..||+.|...+.|..|++.|++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg   26 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHK   26 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcC
Confidence            69999999999999999999999884

>PHA00732 hypothetical protein

Probab=98.07  E-value=3.2e-07  Score=58.27  Aligned_cols=47  Identities=15%  Similarity=0.235  Sum_probs=39.6

Q ss_pred             ccchhhhHHHhcCCCCCCcccccc-cCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           14 SLNMANCLMFLSHGRGFNAVNGVN-TMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        14 ~~~C~~C~~~f~~~~~l~~~~h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      ||.|..|++.|.+...|.  .|++ .|++   +.|+.|++.|.   .|..|.+++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk--~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALK--QHARRNHTL---TKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHH--HHhhcccCC---CccCCCCCEeC---ChhhhhcccC
Confidence            689999999999999996  8987 4764   58999999998   5888887654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.05  E-value=1.7e-06  Score=41.71  Aligned_cols=23  Identities=43%  Similarity=0.911  Sum_probs=21.5

Q ss_pred             CcCCcccccCCCchHHHHHHhhh
Q 044181           91 HECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      |.|++|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.00  E-value=3.4e-06  Score=65.89  Aligned_cols=71  Identities=21%  Similarity=0.481  Sum_probs=49.5

Q ss_pred             CCCceecCc--CCCcCCChHHHHHHHHh-cCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHh
Q 044181           41 AGRAFECKT--CNRQFPSFQALGGHRAS-HKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMR  111 (178)
Q Consensus        41 ~~k~~~C~~--C~k~f~~~~~L~~H~~~-h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~  111 (178)
                      ++|||+|++  |+|.++....|+.|+.. |..++.-..-.-..+.-.-..+|||.|++|+|.+...-.|+-|.+
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            469999987  99999999999999874 322221111111112222346899999999999998888887754

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.95  E-value=4.3e-06  Score=40.22  Aligned_cols=23  Identities=30%  Similarity=0.710  Sum_probs=21.4

Q ss_pred             eecCcCCCcCCChHHHHHHHHhc
Q 044181           45 FECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      |+|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.76  E-value=6.5e-05  Score=44.17  Aligned_cols=51  Identities=25%  Similarity=0.571  Sum_probs=39.2

Q ss_pred             ceecCcCCCcCCChHHHHHHHHh-cCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           44 AFECKTCNRQFPSFQALGGHRAS-HKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      .|.|++|++.| ....|..|... |..                 ..+.+.|++|...+.  .+|..|+..+.
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~-----------------~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDEHRS-----------------ESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhHCcC-----------------CCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            48999999955 56789999765 432                 346799999998765  48999998754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.69  E-value=1.3e-05  Score=40.06  Aligned_cols=26  Identities=38%  Similarity=0.645  Sum_probs=23.7

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhcc
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      ||+|..|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999998753

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.59  E-value=3.3e-05  Score=37.08  Aligned_cols=24  Identities=38%  Similarity=0.832  Sum_probs=20.0

Q ss_pred             CcCCcccccCCCchHHHHHHhhhc
Q 044181           91 HECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      |.|++|++.|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999998763

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.49  E-value=5.4e-05  Score=37.77  Aligned_cols=25  Identities=44%  Similarity=0.897  Sum_probs=23.1

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      ||+|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999998874

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.44  E-value=9.6e-05  Score=35.39  Aligned_cols=23  Identities=35%  Similarity=0.756  Sum_probs=19.6

Q ss_pred             eecCcCCCcCCChHHHHHHHHhc
Q 044181           45 FECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      |.|++|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            78999999999999999999875

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.41  E-value=0.00011  Score=41.95  Aligned_cols=32  Identities=16%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CCCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           87 KPKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        87 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      .+.|..|++|+..+.+..+|++|+.++++.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            57899999999999999999999999888775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.35  E-value=0.00018  Score=34.92  Aligned_cols=25  Identities=40%  Similarity=0.675  Sum_probs=22.4

Q ss_pred             CcCCcccccCCCchHHHHHHhhhcc
Q 044181           91 HECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |.|..|++.|.....|..|++.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            6899999999999999999997753

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.35  E-value=9.6e-05  Score=48.51  Aligned_cols=67  Identities=24%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             cCcCCCcCCChHHHHHHHHhcCCCCC------CCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           47 CKTCNRQFPSFQALGGHRASHKKPRF------TDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        47 C~~C~k~f~~~~~L~~H~~~h~~~~~------~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      |..|+..|.....|..|+....+-..      ........+...- -...+.|..|++.|.+...|..|++.+.
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            56666666666666666643322111      0000111111111 1236999999999999999999999754

>smart00355 ZnF_C2H2 zinc finger

Probab=97.10  E-value=0.00043  Score=33.52  Aligned_cols=24  Identities=33%  Similarity=0.693  Sum_probs=21.8

Q ss_pred             eecCcCCCcCCChHHHHHHHHhcC
Q 044181           45 FECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            679999999999999999999774

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.05  E-value=0.00014  Score=57.09  Aligned_cols=52  Identities=15%  Similarity=0.425  Sum_probs=41.1

Q ss_pred             Ccccchhh--hHHHhcCCCCCCccccccc-C------------------CCCCceecCcCCCcCCChHHHHHHHH
Q 044181           12 DHSLNMAN--CLMFLSHGRGFNAVNGVNT-M------------------AAGRAFECKTCNRQFPSFQALGGHRA   65 (178)
Q Consensus        12 ~~~~~C~~--C~~~f~~~~~l~~~~h~~~-H------------------~~~k~~~C~~C~k~f~~~~~L~~H~~   65 (178)
                      ++||.|++  |.|.+.....|.  -|+.. |                  ..+|||+|++|+|.++....|+.|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLK--YH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLK--YHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchh--hhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            59999986  789999888885  44322 1                  14689999999999999999988864

>PRK04860 hypothetical protein; Provisional

Probab=96.77  E-value=0.0002  Score=51.61  Aligned_cols=36  Identities=11%  Similarity=0.337  Sum_probs=19.4

Q ss_pred             ccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCC
Q 044181           14 SLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFP   55 (178)
Q Consensus        14 ~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~   55 (178)
                      +|.|. |++   ....+  .+|.++|+++++|.|..|++.|.
T Consensus       119 ~Y~C~-C~~---~~~~~--rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRCK-CQE---HQLTV--RRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEcC-CCC---eeCHH--HHHHHHhcCCccEECCCCCceeE
Confidence            45665 654   22223  35666666666666666665554

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.75  E-value=0.00019  Score=42.10  Aligned_cols=51  Identities=16%  Similarity=0.260  Sum_probs=37.2

Q ss_pred             cccchhhhHHHhcCCCCCCccccc-ccCCCC-CceecCcCCCcCCChHHHHHHHHhcC
Q 044181           13 HSLNMANCLMFLSHGRGFNAVNGV-NTMAAG-RAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        13 ~~~~C~~C~~~f~~~~~l~~~~h~-~~H~~~-k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      +.|.|+.|++.|+. ..|.  .|. ..|..+ +.+.|++|...+.  .+|..|+..+.
T Consensus         1 ~~f~CP~C~~~~~~-~~L~--~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    1 DSFTCPYCGKGFSE-SSLV--EHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CCcCCCCCCCccCH-HHHH--HHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            36999999996654 4564  675 346654 5799999998755  48999987653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.70  E-value=0.0024  Score=36.52  Aligned_cols=32  Identities=13%  Similarity=0.191  Sum_probs=22.6

Q ss_pred             CCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           39 MAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        39 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +..+.|..|++|+..+.+..+|.+|+.++.+.
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            44678999999999999999999999776543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.65  E-value=0.0013  Score=47.36  Aligned_cols=38  Identities=18%  Similarity=0.503  Sum_probs=32.2

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCc
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIG  103 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~  103 (178)
                      +|.|. |++   ...++.+|.++|+                  |+++|.|..|++.|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~------------------g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVR------------------GEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhc------------------CCccEECCCCCceeEEe
Confidence            69998 998   5677899999887                  68899999999988643

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.64  E-value=0.0015  Score=42.64  Aligned_cols=50  Identities=24%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             chhhhHHHhcCCCCCCccccccc-CC----------------------CCCceecCcCCCcCCChHHHHHHHHhc
Q 044181           16 NMANCLMFLSHGRGFNAVNGVNT-MA----------------------AGRAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        16 ~C~~C~~~f~~~~~l~~~~h~~~-H~----------------------~~k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      +|..|+..|.....|.  .|+.. |.                      -...+.|..|++.|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~--~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLL--QHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             --------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccc--cccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            4888888888877765  55522 21                      012599999999999999999999975

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.51  E-value=0.001  Score=32.32  Aligned_cols=23  Identities=26%  Similarity=0.660  Sum_probs=21.0

Q ss_pred             CcCCcccccCCCchHHHHHHhhh
Q 044181           91 HECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999999864

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.23  E-value=0.0021  Score=31.17  Aligned_cols=23  Identities=39%  Similarity=0.716  Sum_probs=20.7

Q ss_pred             eecCcCCCcCCChHHHHHHHHhc
Q 044181           45 FECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999998754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.05  E-value=0.0027  Score=31.55  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=20.4

Q ss_pred             CcCCcccccCCCchHHHHHHhh
Q 044181           91 HECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      |-|..|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.67  E-value=0.0092  Score=55.03  Aligned_cols=95  Identities=17%  Similarity=0.262  Sum_probs=68.6

Q ss_pred             chhhhHHHhcCCCCCCccccc-ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCC-cccccc------CCC
Q 044181           16 NMANCLMFLSHGRGFNAVNGV-NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGG-VDMQQL------PIK   87 (178)
Q Consensus        16 ~C~~C~~~f~~~~~l~~~~h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~-~~h~~~------h~~   87 (178)
                      .|..|+..|.++..+.  .|+ ..|+..+.|+|+.|+-.|.....|..|+|+-+-+.....|-. ..|.+.      -.+
T Consensus       438 e~~~~e~~~~s~r~~~--~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~  515 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLE--GQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCP  515 (1406)
T ss_pred             cccchhhhhhhhcccc--cceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCC
Confidence            5777888888887775  443 447888999999999999999999999997321111112211 122211      224


Q ss_pred             CCCCcCCcccccCCCchHHHHHHhh
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      .++|.|..|..+|....+|.+|+..
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHH
Confidence            6899999999999999999999874

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.60  E-value=0.0067  Score=49.50  Aligned_cols=57  Identities=18%  Similarity=0.363  Sum_probs=51.9

Q ss_pred             cccchhhhHHHhcCCCCCCcccccc--cCCCC--CceecC--cCCCcCCChHHHHHHHHhcCCCC
Q 044181           13 HSLNMANCLMFLSHGRGFNAVNGVN--TMAAG--RAFECK--TCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        13 ~~~~C~~C~~~f~~~~~l~~~~h~~--~H~~~--k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      .++.|..|...|++...|.  .|.+  .|+++  +++.|.  .|++.|.+...+.+|...|.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~--~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  350 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLT--RHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSIS  350 (467)
T ss_pred             cCCCCccccCCcccccccc--ccccccccccccCCceeeeccCCCccccccccccCCcccccCCC
Confidence            4799999999999999996  8999  89999  999999  79999999999999999997543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.59  E-value=0.007  Score=29.04  Aligned_cols=23  Identities=26%  Similarity=0.629  Sum_probs=18.2

Q ss_pred             CcCCcccccCCCchHHHHHHhhhc
Q 044181           91 HECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      |+|+.|+.... ...|.+|++.|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            68999998887 889999999865

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.33  E-value=0.011  Score=28.29  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=17.9

Q ss_pred             eecCcCCCcCCChHHHHHHHHhc
Q 044181           45 FECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      |+|+.|+.... ...|..|++.|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            78999999988 89999999875

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.29  E-value=0.014  Score=28.52  Aligned_cols=21  Identities=29%  Similarity=0.618  Sum_probs=17.9

Q ss_pred             CcCCcccccCCCchHHHHHHhh
Q 044181           91 HECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      ..|+.||+.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 67889999864

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.99  E-value=0.0063  Score=30.17  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=19.3

Q ss_pred             eecCcCCCcCCChHHHHHHHHh
Q 044181           45 FECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      |-|..|++.|.+...+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7799999999999999888764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.36  E-value=0.039  Score=26.87  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=17.1

Q ss_pred             eecCcCCCcCCChHHHHHHHHh
Q 044181           45 FECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      ..|+.||+.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 56789999764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.91  E-value=0.037  Score=28.91  Aligned_cols=23  Identities=17%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             CCcCCcccccCCCchHHHHHHhh
Q 044181           90 THECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      +|.|+.|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.31  E-value=0.087  Score=27.44  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.4

Q ss_pred             ceecCcCCCcCCChHHHHHHHHh
Q 044181           44 AFECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      +|.|++|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68899999999999999988864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.74  E-value=0.033  Score=45.38  Aligned_cols=63  Identities=25%  Similarity=0.425  Sum_probs=52.5

Q ss_pred             CceecCcCCCcCCChHHHHHHHH--hcCCCCCCCCCCCccccccCCCC--CCCcCC--cccccCCCchHHHHHHhhhccC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRA--SHKKPRFTDGNGGVDMQQLPIKP--KTHECS--VCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~--~h~~~~~~~~c~~~~h~~~h~~~--k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .++.|..|...|.....|..|.+  .|.                  ++  +++.|+  .|++.|.+...+..|..+|.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~------------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS------------------GESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc------------------cccCCceeeeccCCCccccccccccCCcccccCC
Confidence            46888888888888888888877  455                  66  899999  7999999999999999999988


Q ss_pred             CCCCCCC
Q 044181          117 GLHGNEK  123 (178)
Q Consensus       117 ~~~~~~~  123 (178)
                      .+..+..
T Consensus       350 ~~~~~~~  356 (467)
T COG5048         350 SPAKEKL  356 (467)
T ss_pred             Ccccccc
Confidence            7666544

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=92.68  E-value=0.14  Score=47.64  Aligned_cols=93  Identities=20%  Similarity=0.295  Sum_probs=65.9

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCC-ccccccCCCCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGG-VDMQQLPIKPKT   90 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~-~~h~~~h~~~k~   90 (178)
                      -++|.|..|.+.|+....+.      +---..+|.|..|...|.....|..|++.-.  +.-...+. ..++..+-..+.
T Consensus      1258 sGe~~c~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~l~~~~~k~~--~~~~~~~~~~~~~l~~~d~~~ 1329 (1406)
T KOG1146|consen 1258 SGEGECGAVDELLTPSFGIS------TLDVTHRYLCRQCKMAFDGEAPLTAHQRKFC--FAGRGSGGSMPPPLRVPDCTY 1329 (1406)
T ss_pred             CCcchhhhccccccCcccee------ecccchhHHHHHHHhhhcchhHHHHHHHHHH--hccCccccCCCCcccCccccc
Confidence            46899999999987765541      2223568999999999999999999984321  00111111 334444444566


Q ss_pred             CcCCcccccCCCchHHHHHHhhh
Q 044181           91 HECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      | |..|...|.....|..||++-
T Consensus      1330 ~-c~~c~~~~~~~~alqihm~~~ 1351 (1406)
T KOG1146|consen 1330 H-CLACEVLLSGREALQIHMRSS 1351 (1406)
T ss_pred             c-chHHHhhcchhHHHHHHHHHh
Confidence            7 999999999999999999963

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=91.66  E-value=0.063  Score=40.90  Aligned_cols=50  Identities=30%  Similarity=0.632  Sum_probs=39.1

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHH-Hhhhc
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGH-MRRHR  114 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H-~~~H~  114 (178)
                      .||+ |=+|++.|....-|.+|++                      .|.|+|.+|-|.+-+.-.|..| |++|.
T Consensus         9 ~kpw-cwycnrefddekiliqhqk----------------------akhfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQK----------------------AKHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhh----------------------hccceeeeehhhhccCCCceeehhhhhh
Confidence            4566 6689999999888888877                      5669999999877677777777 56664

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.75  E-value=0.25  Score=37.43  Aligned_cols=46  Identities=9%  Similarity=0.089  Sum_probs=29.6

Q ss_pred             CcccchhhhHHHhcCCCCCCcccc-cccCC-------CCCc-----eecCcCCCcCCCh
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNG-VNTMA-------AGRA-----FECKTCNRQFPSF   57 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h-~~~H~-------~~k~-----~~C~~C~k~f~~~   57 (178)
                      ++.+.|++|++.|........... .+..+       +..|     ..|+.||.+|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            578999999999988855431111 12222       3333     4799999887644

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=84.45  E-value=0.47  Score=31.93  Aligned_cols=30  Identities=20%  Similarity=0.460  Sum_probs=22.0

Q ss_pred             cchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCCh
Q 044181           15 LNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSF   57 (178)
Q Consensus        15 ~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~   57 (178)
                      -.|..||+.|   .-|.          ..|-.|+.||..|...
T Consensus        10 R~Cp~CG~kF---YDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKF---YDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchh---ccCC----------CCCccCCCCCCccCcc
Confidence            4688888887   5562          3577888898888755

The function of members of this family is unknown.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=84.33  E-value=4.1  Score=27.17  Aligned_cols=69  Identities=16%  Similarity=0.297  Sum_probs=43.6

Q ss_pred             CceecCcCCCcCCChHHHHHHHHh-cCCCC--------------------------CCCCCCCccccccCCCCCCCcC--
Q 044181           43 RAFECKTCNRQFPSFQALGGHRAS-HKKPR--------------------------FTDGNGGVDMQQLPIKPKTHEC--   93 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~--------------------------~~~~c~~~~h~~~h~~~k~~~C--   93 (178)
                      +-..|..|+.+... +.+..|.+. |....                          +-..+.-...+.++.|   |.|  
T Consensus        10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G---~~C~~   85 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDG---YRCQC   85 (109)
T ss_pred             CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCC---eeeec
Confidence            34568888877654 678888873 32110                          0011111233344433   899  


Q ss_pred             --CcccccCCCchHHHHHHhhhcc
Q 044181           94 --SVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        94 --~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                        ..|+..+.+...+.+|.+.++|
T Consensus        86 ~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   86 DPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCCCCcEeccHHHHHHHHHHhcC
Confidence              9999999999999999987654

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=82.98  E-value=1.1  Score=36.28  Aligned_cols=68  Identities=22%  Similarity=0.367  Sum_probs=46.7

Q ss_pred             eecCc--CCCcCCChHHHHHHHHhcCCCCCCCCCCC-----------------ccccccCCCCCCC----cCCcccccCC
Q 044181           45 FECKT--CNRQFPSFQALGGHRASHKKPRFTDGNGG-----------------VDMQQLPIKPKTH----ECSVCGLEFA  101 (178)
Q Consensus        45 ~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~c~~-----------------~~h~~~h~~~k~~----~C~~Cgk~F~  101 (178)
                      |.|+.  |.......-.|+.|.++..+...|..|-.                 ..|......+.-|    .|..|...|-
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FY  231 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFY  231 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccceec
Confidence            77865  67777777888899887766666655532                 3444443333222    6888999998


Q ss_pred             CchHHHHHHhh
Q 044181          102 IGQALGGHMRR  112 (178)
Q Consensus       102 ~~~~L~~H~~~  112 (178)
                      ....|.+|+|.
T Consensus       232 dDDEL~~HcR~  242 (493)
T COG5236         232 DDDELRRHCRL  242 (493)
T ss_pred             ChHHHHHHHHh
Confidence            88899888875

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=80.82  E-value=0.73  Score=26.93  Aligned_cols=28  Identities=18%  Similarity=0.351  Sum_probs=24.3

Q ss_pred             CCCCCCCcCCcccccCCCchHHHHHHhh
Q 044181           85 PIKPKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        85 h~~~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      -.||.-+.|+.||..|.......+|...
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            3477889999999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	1e-10
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	8e-08
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-05

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 53.2 bits (128), Expect = 1e-10
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 43 RAFECKTCNRQFPSFQALGGHRASHKKPR 71
          R++ C  C R+F S QALGGH   H++ R
Sbjct: 5  RSYTCSFCKREFRSAQALGGHMNVHRRDR 33

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 45.5 bits (108), Expect = 8e-08
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 88  PKTHECSVCGLEFAIGQALGGHMRRHR 114
           P+++ CS C  EF   QALGGHM  HR
Sbjct: 4   PRSYTCSFCKREFRSAQALGGHMNVHR 30

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 19/117 (16%)

Query: 28  RGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGH---------------RASHKKPRF 72
            G +     +       F CK C+  + +   L  H                 + K+   
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62

Query: 73  TDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSG 129
                 ++M+      K  +C  CG  F   Q L  HM + +    H  +     SG
Sbjct: 63  PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK----HYQKVSGPSSG 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.9
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.9
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.85
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.85
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.85
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.82
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.82
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.81
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.81
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.8
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.8
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.79
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.78
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.75
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.74
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.74
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.73
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.71
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.71
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.7
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.69
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.69
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.68
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.68
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.68
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.67
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.66
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.66
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.65
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.64
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.64
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.64
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.62
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.62
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.62
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.6
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.58
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.57
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.57
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.56
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.56
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.55
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.55
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.55
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.54
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.54
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.54
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.53
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.53
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.53
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.53
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.53
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.52
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.52
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.52
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.5
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.5
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.48
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.47
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.46
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.45
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.45
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.45
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.44
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.44
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.44
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.44
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.44
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.44
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.44
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.43
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.43
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.43
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.43
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.42
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.42
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.42
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.42
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.41
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.4
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.39
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.38
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.37
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.36
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.36
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.35
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.35
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.35
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.35
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.34
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.34
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.34
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.33
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.33
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.33
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.33
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.32
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.32
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.32
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.31
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.31
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.31
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.31
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.3
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.3
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.29
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.29
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.29
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.28
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.28
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.28
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.26
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.26
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.26
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.25
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.25
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.24
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.23
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.22
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.21
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.2
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.18
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.17
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.15
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.15
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.13
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.13
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.11
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.1
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.07
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.06
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.05
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.04
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.01
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.98
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.97
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.97
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.92
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.9
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.89
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.88
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.85
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.82
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.76
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.76
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.74
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.72
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.71
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.71
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.7
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.68
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.68
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.64
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.64
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.64
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.63
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.62
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.6
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.58
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.58
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.56
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.56
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.56
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.97
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.54
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.53
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.53
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.51
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.5
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.5
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.49
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.49
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.46
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.46
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.46
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.8
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.42
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.42
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.39
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.39
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.72
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.72
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.31
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.6
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.23
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.11
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.63
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.15
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.05
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.76
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.44
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.01
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.16
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.72
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	89.03
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	84.52
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	83.69
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	82.41
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	80.98
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	80.88

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=3e-26  Score=160.08  Aligned_cols=98  Identities=15%  Similarity=0.248  Sum_probs=89.6

Q ss_pred             ccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCcccc
Q 044181            3 RAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQ   82 (178)
Q Consensus         3 r~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~   82 (178)
                      .|...|.| +++|.|.+|++.|.+...|.  .|+++|++++||.|++|++.|...+.|..|+++|+              
T Consensus        12 h~~~~h~G-ek~y~C~~C~k~F~~~~~L~--~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------   74 (133)
T 2lt7_A           12 HYELIVDG-RVYYICIVCKRSYVCLTSLR--RHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT--------------   74 (133)
T ss_dssp             EEEEEETT-EEEEEETTTCCEESCHHHHH--HHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHH--------------
T ss_pred             hceeecCC-CcCeECCCCCCCcCCHHHHH--HHHHHcCCCCCeeCCccCeecccccchhhhccccC--------------
Confidence            45567767 99999999999999999995  99999999999999999999999999999999987              


Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                          |++||.|++||+.|.+.+.|..|+++|++++|+.+
T Consensus        75 ----~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~  109 (133)
T 2lt7_A           75 ----GERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGD  109 (133)
T ss_dssp             ----TCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSS
T ss_pred             ----CCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCC
Confidence                68999999999999999999999999988876544

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.90  E-value=2.1e-26  Score=169.29  Aligned_cols=125  Identities=16%  Similarity=0.237  Sum_probs=70.0

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCC--CCCCCC
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRF--TDGNGG   78 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~--~~~c~~   78 (178)
                      |.+|...|.+ +++|.|..|++.|.....|.  .|+++|.++++|.|..|++.|.....|..|+++|.++++  |..|++
T Consensus         9 l~~h~~~~~~-~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   85 (190)
T 2i13_A            9 SVAQAALEPG-EKPYACPECGKSFSRSDHLA--EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGK   85 (190)
T ss_dssp             -----------------------CCSSHHHH--HGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             chhhhhhcCC-CCCCcCCCCccccCCHHHHH--HHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCC
Confidence            4567777766 78888888888888877774  788888888888888888888888888888888766544  666665


Q ss_pred             --------ccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCCcccCc
Q 044181           79 --------VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLS  128 (178)
Q Consensus        79 --------~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~  128 (178)
                              ..|++.|.++++|.|++|++.|.+...|..|+++|.++++|.|.......
T Consensus        86 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  143 (190)
T 2i13_A           86 SFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF  143 (190)
T ss_dssp             EESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             ccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCccc
Confidence                    45666666666666666666666666666666666666666666554433

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.90  E-value=3.2e-25  Score=162.88  Aligned_cols=127  Identities=16%  Similarity=0.277  Sum_probs=114.0

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCC--CCCCCC
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRF--TDGNGG   78 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~--~~~c~~   78 (178)
                      |++|...|.+ +++|.|..|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|.++++  |..|++
T Consensus        37 l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  113 (190)
T 2i13_A           37 LAEHQRTHTG-EKPYKCPECGKSFSDKKDLT--RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGK  113 (190)
T ss_dssp             HHHGGGCC----CCEECTTTCCEESSHHHHH--HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCC
T ss_pred             HHHHHHHcCC-CCCccCCCcCchhCCHHHHH--HHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCC
Confidence            5689999977 89999999999999998885  999999999999999999999999999999999987665  899987


Q ss_pred             --------ccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCCcccCcCC
Q 044181           79 --------VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSDLSGL  130 (178)
Q Consensus        79 --------~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~  130 (178)
                              ..|+++|.++++|.|++||+.|.+...|..|+++|.++++|.|.........
T Consensus       114 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~  173 (190)
T 2i13_A          114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR  173 (190)
T ss_dssp             EESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             ccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCC
Confidence                    6888999999999999999999999999999999999999999988665443

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.86  E-value=1.9e-23  Score=153.35  Aligned_cols=112  Identities=16%  Similarity=0.259  Sum_probs=68.2

Q ss_pred             CcccccccCCCCcccch--hhhHHHhcCCCCCCcccccccCCCCCceecC--cCCCcCCChHHHHHHH-Hhc-CCCC--C
Q 044181            1 MKRAFQESSELDHSLNM--ANCLMFLSHGRGFNAVNGVNTMAAGRAFECK--TCNRQFPSFQALGGHR-ASH-KKPR--F   72 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~-~~h-~~~~--~   72 (178)
                      |++|.+.|++ +++|.|  ..|++.|.....|.  .|+++|.++++|.|.  .|++.|.....|..|+ +.| .++.  .
T Consensus        30 L~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  106 (190)
T 1tf6_A           30 LQAHLCKHTG-EKPFPCKEEGCEKGFTSLHHLT--RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV  106 (190)
T ss_dssp             HHHHHHHHHC-CCSSCCSSTTCCCCCSSHHHHH--HHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCE
T ss_pred             HHHHHHhcCC-CCCccCCCCCCChhhCCHHHHH--HHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceee
Confidence            3455566655 666666  56666666666663  666666666666666  5666666666666666 444 2222  2


Q ss_pred             C--CCCCC--------ccccccCCCCCCCcCCc--ccccCCCchHHHHHHhhhcc
Q 044181           73 T--DGNGG--------VDMQQLPIKPKTHECSV--CGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        73 ~--~~c~~--------~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |  ..|++        ..|+++|++++||.|++  ||+.|.+...|..|+++|.+
T Consensus       107 C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             ECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            5  55554        45666666666666655  66666666666666666665

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=5.4e-23  Score=146.24  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             CCcccchhhhHHHhcCCCCCCccccccc-CCCCCc--------eecCcCCCcCCChHHHHHHHHhcCCCCC--CCC--CC
Q 044181           11 LDHSLNMANCLMFLSHGRGFNAVNGVNT-MAAGRA--------FECKTCNRQFPSFQALGGHRASHKKPRF--TDG--NG   77 (178)
Q Consensus        11 ~~~~~~C~~C~~~f~~~~~l~~~~h~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~h~~~~~--~~~--c~   77 (178)
                      .+.+|.|..|++.|.+...|.  .|+++ |.++++        |.|.+|++.|.....|..|+++|.++++  |..  |+
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~--~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELV--THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHH--HHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             hhcccccccCCcccCCHHHHH--HHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            378899999999999999995  89987 888765        8999999999999999999999987765  876  98


Q ss_pred             C--------ccccccCCCCCCCcCCc--ccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           78 G--------VDMQQLPIKPKTHECSV--CGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        78 ~--------~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      +        ..|+++|+++++|.|.+  |++.|.+...|..|+++|+++++|.|+
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            7        67999999999999997  999999999999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=4.1e-23  Score=141.21  Aligned_cols=104  Identities=15%  Similarity=0.216  Sum_probs=91.3

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhc---CCCCC--CCCCCC--------
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASH---KKPRF--TDGNGG--------   78 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h---~~~~~--~~~c~~--------   78 (178)
                      +++|.|.+|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|++.|   .++.+  |..|++        
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYLK--VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHHH--HHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCcCCCHHHHH--HHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            79999999999999998995  8999999999999999999999999999999864   44443  888876        


Q ss_pred             ccccccCCCCCCCcCCcccccCCCchHHHHHHh-hhccCC
Q 044181           79 VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMR-RHRAAG  117 (178)
Q Consensus        79 ~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~  117 (178)
                      ..|+++|.+++||.|++|++.|.+...|..|++ .|.++.
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             HHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            678888999999999999999999999999987 576653

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.85  E-value=1.7e-22  Score=134.91  Aligned_cols=91  Identities=21%  Similarity=0.357  Sum_probs=84.8

Q ss_pred             CCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCC
Q 044181           11 LDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKT   90 (178)
Q Consensus        11 ~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~   90 (178)
                      .+++|.|.+|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|.                  ++++
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~   73 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLL--IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS------------------KEKP   73 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHH--HHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSC------------------CCCT
T ss_pred             CCcCeECCCCCCccCCHHHHH--HHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhC------------------CCCC
Confidence            478999999999999998885  89999999999999999999999999999999886                  6899


Q ss_pred             CcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           91 HECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      |.|.+|++.|.+...|..|+++|.++++|.+
T Consensus        74 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             eECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            9999999999999999999999999997754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=2e-22  Score=132.16  Aligned_cols=90  Identities=17%  Similarity=0.305  Sum_probs=84.1

Q ss_pred             CCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCC
Q 044181           10 ELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPK   89 (178)
Q Consensus        10 ~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k   89 (178)
                      +.+++|.|.+|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|.                  +++
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~   63 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLK--THMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS------------------DER   63 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHH--HHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSC------------------CCC
T ss_pred             CCCcCeECCCCCCccCCHHHHH--HHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhC------------------CCC
Confidence            3489999999999999998885  99999999999999999999999999999999887                  688


Q ss_pred             CCcCCcccccCCCchHHHHHHhhhccCCCC
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRAAGLH  119 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~  119 (178)
                      +|.|.+|++.|.+...|..|+++|.+++++
T Consensus        64 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           64 PFKCQICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999998744

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=5.1e-23  Score=141.05  Aligned_cols=105  Identities=18%  Similarity=0.345  Sum_probs=85.4

Q ss_pred             Ccccchh--hhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCC--CC--CCCC-------
Q 044181           12 DHSLNMA--NCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRF--TD--GNGG-------   78 (178)
Q Consensus        12 ~~~~~C~--~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~--~~--~c~~-------   78 (178)
                      +++|.|.  .|++.|.....|.  .|+++| ++++|.|.+|++.|.....|..|+++|.++++  |.  .|++       
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~--~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   79 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMR--KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN   79 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHH--HHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHH--HHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHH
Confidence            5789998  8999999888885  888889 88899999999999999999999999987665  75  3776       


Q ss_pred             -ccccccCCCCCCCcCC--cccccCCCchHHHHHHhhhccCCCC
Q 044181           79 -VDMQQLPIKPKTHECS--VCGLEFAIGQALGGHMRRHRAAGLH  119 (178)
Q Consensus        79 -~~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~  119 (178)
                       ..|+++|.++++|.|+  .||+.|.+...|..|+++|++++++
T Consensus        80 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence             5788888899999995  5999999999999999999988754

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=2.6e-23  Score=141.34  Aligned_cols=100  Identities=17%  Similarity=0.272  Sum_probs=80.2

Q ss_pred             Ccccchhh--hHHHhcCCCCCCcccccccCCCCCceecC--cCCCcCCChHHHHHHHHhcCCCCC--CCCCCC-------
Q 044181           12 DHSLNMAN--CLMFLSHGRGFNAVNGVNTMAAGRAFECK--TCNRQFPSFQALGGHRASHKKPRF--TDGNGG-------   78 (178)
Q Consensus        12 ~~~~~C~~--C~~~f~~~~~l~~~~h~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~--~~~c~~-------   78 (178)
                      +++|.|.+  |++.|.....|.  .|+++|.++++|.|.  .|++.|.....|..|+++|.++++  |..|++       
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQ--MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHH--HHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CeeeeCCCCCCcchhCCHHHHH--HHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            89999997  999999999995  899999999999999  799999999999999999976543  666655       


Q ss_pred             -ccccccCCCCCCCcC--CcccccCCCchHHHHHHhhh
Q 044181           79 -VDMQQLPIKPKTHEC--SVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        79 -~~h~~~h~~~k~~~C--~~Cgk~F~~~~~L~~H~~~H  113 (178)
                       ..|+++|+++++|.|  +.||+.|.+...|..|+++|
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence             456666666666666  56666666666666666654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.7e-22  Score=143.42  Aligned_cols=91  Identities=13%  Similarity=0.241  Sum_probs=43.5

Q ss_pred             HHhcCCCCCCcccccccCCCCCceecCc--CCCcCCChHHHHHHHHhcCCCCC--CCC--CCC--------cccc-ccCC
Q 044181           22 MFLSHGRGFNAVNGVNTMAAGRAFECKT--CNRQFPSFQALGGHRASHKKPRF--TDG--NGG--------VDMQ-QLPI   86 (178)
Q Consensus        22 ~~f~~~~~l~~~~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~--~~~--c~~--------~~h~-~~h~   86 (178)
                      +.|.....|.  .|+++|+++++|.|.+  |++.|.....|..|+++|.++++  |..  |++        ..|+ +.|+
T Consensus        47 ~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           47 RPFKAQYMLV--VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCSSHHHHH--HHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             hhhhhHHHHH--HHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            4444444442  4555555555555543  55555555555555555544332  443  443        3344 3445


Q ss_pred             CCCCCcCCc--ccccCCCchHHHHHHhhhc
Q 044181           87 KPKTHECSV--CGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        87 ~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~  114 (178)
                      ++++|.|++  ||+.|.+...|..|+++|+
T Consensus       125 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             SCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            555555544  5555555555555554443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=3.5e-22  Score=133.80  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=77.1

Q ss_pred             cccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccc
Q 044181            4 AFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQ   83 (178)
Q Consensus         4 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~   83 (178)
                      +...|++ +++|.|.+|++.|.....|.  .|+++|  +++|.|.+|++.|.....|..|++ |+               
T Consensus         7 ~~~~h~~-~~~~~C~~C~~~f~~~~~l~--~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~---------------   65 (107)
T 1wjp_A            7 GASPVEN-KEVYQCRLCNAKLSSLLEQG--SHERLC--RNAAVCPYCSLRFFSPELKQEHES-KC---------------   65 (107)
T ss_dssp             CCCCCCC-CCCCBCTTTCCBCSSHHHHH--HHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HC---------------
T ss_pred             cCcccCC-CcCeECCCCCCccCCHHHHH--HHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cC---------------
Confidence            3455655 77788888887777777774  777777  367778888888877777777774 65               


Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHh-hhccCCCCCCCCc
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMR-RHRAAGLHGNEKL  124 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~  124 (178)
                         ++++|.|.+|++.|.+...|..|++ +|.++++|.+..+
T Consensus        66 ---~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~p  104 (107)
T 1wjp_A           66 ---EYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGP  104 (107)
T ss_dssp             ---STGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCCCS
T ss_pred             ---CCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCCCC
Confidence               6899999999999999999999997 9999999877554

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.82  E-value=6.8e-21  Score=114.79  Aligned_cols=59  Identities=24%  Similarity=0.536  Sum_probs=55.8

Q ss_pred             CCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           41 AGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        41 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .||||+|.+||+.|...++|..|+++|+                  |++||.|++||+.|.+.+.|..|+++|+|++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht------------------~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHL------------------GYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHH------------------TCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhC------------------CCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            3899999999999999999999999997                  6999999999999999999999999999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.82  E-value=2e-21  Score=142.51  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=105.3

Q ss_pred             Ccccch--hhhHHHhcCCCCCCcccccccCCCCCceec--CcCCCcCCChHHHHHHHHhcCCCCC--CC--CCCC-----
Q 044181           12 DHSLNM--ANCLMFLSHGRGFNAVNGVNTMAAGRAFEC--KTCNRQFPSFQALGGHRASHKKPRF--TD--GNGG-----   78 (178)
Q Consensus        12 ~~~~~C--~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~--~~--~c~~-----   78 (178)
                      +++|.|  ..|++.|.....|.  .|+++|+++++|.|  +.|++.|.....|..|+++|.++++  |.  .|++     
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   87 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQ--AHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK   87 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHH--HHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCH
T ss_pred             CcceeCCCCCCcchhCCHHHHH--HHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCH
Confidence            789999  78999999998885  89999999999999  8899999999999999999988765  88  8987     


Q ss_pred             ---cccc-ccC-CCCCCCcC--CcccccCCCchHHHHHHhhhccCCCCCCCC--cccCcCC
Q 044181           79 ---VDMQ-QLP-IKPKTHEC--SVCGLEFAIGQALGGHMRRHRAAGLHGNEK--LSDLSGL  130 (178)
Q Consensus        79 ---~~h~-~~h-~~~k~~~C--~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~--~~~~~~~  130 (178)
                         ..|+ ..| .++++|.|  ++||+.|.+...|..|+++|.++++|.|..  .......
T Consensus        88 ~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~  148 (190)
T 1tf6_A           88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL  148 (190)
T ss_dssp             HHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSS
T ss_pred             HHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcC
Confidence               6787 677 57899999  999999999999999999999999999976  7665544

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=1.2e-19  Score=122.69  Aligned_cols=90  Identities=21%  Similarity=0.330  Sum_probs=75.9

Q ss_pred             CCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHh--cCCCCC---CCCCCC----------ccccccCCCCCC
Q 044181           26 HGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRAS--HKKPRF---TDGNGG----------VDMQQLPIKPKT   90 (178)
Q Consensus        26 ~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~---~~~c~~----------~~h~~~h~~~k~   90 (178)
                      ....|.  .|+++|++++||.|.+|++.|.....|..|+++  |.+..+   |..|++          ..|+++|++++|
T Consensus         3 s~~~l~--~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~   80 (115)
T 2dmi_A            3 SGSSGK--LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV   80 (115)
T ss_dssp             CCCCCC--CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS
T ss_pred             cchhhh--hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc
Confidence            345664  899999999999999999999999999999998  654442   666643          578889999999


Q ss_pred             CcCCcccccCCCchHHHHHHhhhccCC
Q 044181           91 HECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      |.|++||+.|.+...|..|+++|....
T Consensus        81 ~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           81 LKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             eECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            999999999999999999999987665

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.81  E-value=5.7e-22  Score=128.34  Aligned_cols=86  Identities=21%  Similarity=0.454  Sum_probs=79.2

Q ss_pred             Ccccchh--hhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCC
Q 044181           12 DHSLNMA--NCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPK   89 (178)
Q Consensus        12 ~~~~~C~--~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k   89 (178)
                      +++|.|.  .|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|.                  +++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~   61 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLT--RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------------------GEK   61 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHH--HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH------------------CCC
T ss_pred             CCceECCCCCCCCccCCHHHHH--HHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcC------------------CCC
Confidence            6899998  6999999999895  89999999999999999999999999999999987                  588


Q ss_pred             CCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +|.|.+||+.|.+...|..|+++|.+++
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            9999999999999999999999999876

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.81  E-value=7.3e-22  Score=125.59  Aligned_cols=82  Identities=23%  Similarity=0.475  Sum_probs=77.1

Q ss_pred             ccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcC
Q 044181           14 SLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHEC   93 (178)
Q Consensus        14 ~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C   93 (178)
                      ||.|..|++.|.....|.  .|+++|.++++|.|..|++.|.....|..|+++|.                  ++++|.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLS--THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT------------------GEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHH--HHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHH------------------TCCCEEC
T ss_pred             CccCCCCcccccCchhHH--HHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhc------------------CCCCCcC
Confidence            689999999999998885  89999999999999999999999999999999987                  5889999


Q ss_pred             CcccccCCCchHHHHHHhhhcc
Q 044181           94 SVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        94 ~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      .+||+.|.+...|..|+++|+|
T Consensus        61 ~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHHHC-
T ss_pred             CCcchhhCChHHHHHHHHhhCC
Confidence            9999999999999999999975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=5.2e-21  Score=125.07  Aligned_cols=88  Identities=19%  Similarity=0.374  Sum_probs=80.5

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTH   91 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~   91 (178)
                      +++|.|.+|++.|.....|.  .|+++|+++++|.|.+|++.|.....|..|+++|.++                .+++|
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----------------~~~~~   66 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLN--RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS----------------VGKPY   66 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHH--HHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC----------------CCSSB
T ss_pred             CCCeECCCCCCccCChHHHH--HHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC----------------CCCce
Confidence            89999999999999998885  9999999999999999999999999999999999742                24899


Q ss_pred             cCCcccccCCCchHHHHHHh-hhccCC
Q 044181           92 ECSVCGLEFAIGQALGGHMR-RHRAAG  117 (178)
Q Consensus        92 ~C~~Cgk~F~~~~~L~~H~~-~H~~~~  117 (178)
                      .|.+|++.|.+...|..|++ +|.++.
T Consensus        67 ~C~~C~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           67 ICQSCGKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             CCSSSCCCBSSHHHHHHHHHHTSCCCS
T ss_pred             ECCCccchhCCHHHHHHHHHHhcCCCC
Confidence            99999999999999999986 787654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.4e-21  Score=131.36  Aligned_cols=89  Identities=21%  Similarity=0.361  Sum_probs=81.9

Q ss_pred             ccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCC
Q 044181            7 ESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPI   86 (178)
Q Consensus         7 ~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~   86 (178)
                      .|++ +++|.| .|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|.                  
T Consensus         4 ~h~~-~k~~~C-~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------   61 (110)
T 2csh_A            4 GSSG-DKLYPC-QCGKSFTHKSQRD--RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT------------------   61 (110)
T ss_dssp             CCCC-CCCEEC-TTSCEESSHHHHH--HHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTC------------------
T ss_pred             CCCC-CCCEec-cCCCccCCHHHHH--HHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcC------------------
Confidence            5666 899999 9999999998885  89999999999999999999999999999999886                  


Q ss_pred             CCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           87 KPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        87 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ++++|.|.+|++.|.+...|..|++.|....
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~   92 (110)
T 2csh_A           62 GIKPYECNICAKRFMWRDSFHRHVTSCTKSY   92 (110)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCeeCCCCcchhcCHHHHHHHHHHccccc
Confidence            6889999999999999999999999987653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=2.9e-21  Score=137.04  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=100.4

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccc---cCCCCCceecCcC-----CCcCCChHHHHHHHHhcCCCCC--CC--CCCC-
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVN---TMAAGRAFECKTC-----NRQFPSFQALGGHRASHKKPRF--TD--GNGG-   78 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~---~H~~~k~~~C~~C-----~k~f~~~~~L~~H~~~h~~~~~--~~--~c~~-   78 (178)
                      |-+|.|..|++.|.+...|.  .|++   +|+++++|.|.+|     ++.|.....|..|+++|.++++  |.  .|++ 
T Consensus         1 E~~~~C~~C~~~f~~~~~L~--~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   78 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLV--HHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKS   78 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHH--HHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCC
T ss_pred             CCcCCcCCCccccCCHHHHH--HHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCc
Confidence            46899999999999999995  8987   8999999998753     4999999999999999977654  76  4876 


Q ss_pred             -------ccccccCCCCCCCcCCc--ccccCCCchHHHHHH-hhhccCCCCCCCC--cccC
Q 044181           79 -------VDMQQLPIKPKTHECSV--CGLEFAIGQALGGHM-RRHRAAGLHGNEK--LSDL  127 (178)
Q Consensus        79 -------~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~-~~H~~~~~~~~~~--~~~~  127 (178)
                             ..|+++|.++++|.|++  |++.|.+...|..|+ ++|.++++|.|..  ....
T Consensus        79 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~  139 (155)
T 2gli_A           79 YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKR  139 (155)
T ss_dssp             CSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCE
T ss_pred             ccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccc
Confidence                   67999999999999998  999999999999999 8999999999987  5543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.79  E-value=9.6e-22  Score=137.16  Aligned_cols=95  Identities=14%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCcc
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVD   80 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~   80 (178)
                      |++|.+.|++ +++|.|.+|++.|.+...|.  .|+++|++++||.|++|++.|...+.|..|+++|+++.+.       
T Consensus        38 L~~H~~~H~~-~k~~~C~~C~k~F~~~~~L~--~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~-------  107 (133)
T 2lt7_A           38 LRRHFNIHSW-EKKYPCRYCEKVFPLAEYRT--KHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPS-------  107 (133)
T ss_dssp             HHHHHHHHHC-CSCEECSSSSCEESSHHHHH--HHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTT-------
T ss_pred             HHHHHHHcCC-CCCeeCCccCeecccccchh--hhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCC-------
Confidence            6789999988 99999999999999999995  9999999999999999999999999999999998765432       


Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                           ...++|+|.+|++.|.       |+++|.+++
T Consensus       108 -----~~~k~~~C~~C~k~~~-------~~~~h~~ek  132 (133)
T 2lt7_A          108 -----GDSKLYRLHPCRSLQI-------RQYAYLSDR  132 (133)
T ss_dssp             -----SSSCCEEECCCCSSCC-------CCCHHHHCC
T ss_pred             -----CCCCCeecCCCCchhh-------hcccccccC
Confidence                 2367899999999886       455566554

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.78  E-value=3.3e-21  Score=116.15  Aligned_cols=58  Identities=14%  Similarity=0.243  Sum_probs=55.4

Q ss_pred             CCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           11 LDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        11 ~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +|+||.|.+||+.|.+...|.  .|+++|+|++||.|.+||+.|...++|..|+++|+++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~--~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLS--RHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHH--HHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCCccCCCCCCEeCCHHHHH--HHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            479999999999999999996  9999999999999999999999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.75  E-value=1.2e-19  Score=119.55  Aligned_cols=84  Identities=21%  Similarity=0.469  Sum_probs=78.5

Q ss_pred             Ccccchhh--hHHHhcCCCCCCcccccccCCCCCceecC--cCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCC
Q 044181           12 DHSLNMAN--CLMFLSHGRGFNAVNGVNTMAAGRAFECK--TCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIK   87 (178)
Q Consensus        12 ~~~~~C~~--C~~~f~~~~~l~~~~h~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~   87 (178)
                      ++.|.|..  |++.|.....|.  .|+++|.++++|.|.  .|++.|.....|..|+++|.                  +
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~------------------~   72 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLK--AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT------------------G   72 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHH--HHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHT------------------S
T ss_pred             CcceEcCCCCCCCcccCHHHHH--HHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhC------------------C
Confidence            68899997  999999998885  999999999999996  69999999999999999987                  6


Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhcc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      +++|.|.+|++.|.+...|..|+++|.+
T Consensus        73 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           73 AKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            8999999999999999999999999974

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.74  E-value=1e-19  Score=117.34  Aligned_cols=83  Identities=19%  Similarity=0.412  Sum_probs=77.6

Q ss_pred             Ccccchhh--hHHHhcCCCCCCcccccccCCCCCceecC--cCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCC
Q 044181           12 DHSLNMAN--CLMFLSHGRGFNAVNGVNTMAAGRAFECK--TCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIK   87 (178)
Q Consensus        12 ~~~~~C~~--C~~~f~~~~~l~~~~h~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~   87 (178)
                      .++|.|..  |++.|.....|.  .|+++|+++++|.|.  .|++.|.....|..|+++|.                  +
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~------------------~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLK--AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT------------------G   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHH--HHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHH------------------C
T ss_pred             CCCeeCCCCCCCCcCCCHHHHH--HHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcC------------------C
Confidence            57899999  999999998885  999999999999997  59999999999999999987                  6


Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      +++|.|++||+.|.+.+.|..|+++|.
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhhC
Confidence            889999999999999999999999984

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=8.8e-19  Score=115.62  Aligned_cols=79  Identities=19%  Similarity=0.221  Sum_probs=69.8

Q ss_pred             hcCCCCCCcccccccCCCCCceecCcCCCcCC-ChHHHHHHHHhcCCCCCCCCCCCccccccCCC-CCCCcCCcccccCC
Q 044181           24 LSHGRGFNAVNGVNTMAAGRAFECKTCNRQFP-SFQALGGHRASHKKPRFTDGNGGVDMQQLPIK-PKTHECSVCGLEFA  101 (178)
Q Consensus        24 f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~-~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~-~k~~~C~~Cgk~F~  101 (178)
                      +.....+  ..|+++|+++++|.|.+|++.|. ....|..|+++|+                  + +++|.|.+|++.|.
T Consensus         6 ~~~~~~~--~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~------------------~~~~~~~C~~C~k~F~   65 (98)
T 2gqj_A            6 SGPGGPE--EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ------------------KLQDALKCQHCRKQFK   65 (98)
T ss_dssp             CCCCCSC--SHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH------------------HHHHHHSCSSSCCCCS
T ss_pred             CCCCCcH--HHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc------------------CCCCCEECCCCCCccC
Confidence            3444445  48999999999999999999999 9999999999987                  4 78999999999999


Q ss_pred             CchHHHHHHhhhccCCCCCCC
Q 044181          102 IGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus       102 ~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      +...|..|+++|+++++...+
T Consensus        66 ~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           66 SKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CHHHHHHHHHHHSCSCSSCCC
T ss_pred             CHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999999875543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=7.9e-18  Score=107.71  Aligned_cols=80  Identities=20%  Similarity=0.363  Sum_probs=70.5

Q ss_pred             ccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhh
Q 044181           33 VNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        33 ~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      .+|+++|+++++|.|.+|++.|.....|..|++.|....              ..+++|.|.+|++.|.+...|..|+++
T Consensus         4 ~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~--------------~~~~~~~C~~C~~~f~~~~~L~~H~~~   69 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN--------------FVPAAFVCSKCGKTFTRRNTMARHADN   69 (86)
T ss_dssp             TCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS--------------CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             ccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc--------------CCCcceECCCCCChhCCHHHHHHHHHH
Confidence            489999999999999999999999999999998775310              024799999999999999999999999


Q ss_pred             hccCCCCCCCCccc
Q 044181          113 HRAAGLHGNEKLSD  126 (178)
Q Consensus       113 H~~~~~~~~~~~~~  126 (178)
                      |.+++++.++....
T Consensus        70 h~~~~~~~~~~~~~   83 (86)
T 1x6h_A           70 CAGPDGVEGENSGP   83 (86)
T ss_dssp             CCCCCSCCCCCCCC
T ss_pred             ccCCCCcccCCCCC
Confidence            99999998877654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.2e-17  Score=103.74  Aligned_cols=66  Identities=23%  Similarity=0.458  Sum_probs=61.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhh
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      .+.++|+++++|.|.+|++.|.....|..|+++|.                  +++||.|.+|++.|.+...|..|+++|
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT------------------GEKPYKCLECGKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG------------------CSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcC------------------CCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            35689999999999999999999999999999887                  689999999999999999999999999


Q ss_pred             ccCC
Q 044181          114 RAAG  117 (178)
Q Consensus       114 ~~~~  117 (178)
                      .++.
T Consensus        66 ~~~~   69 (72)
T 1x6e_A           66 TSGP   69 (72)
T ss_dssp             HSSS
T ss_pred             CCCC
Confidence            9876

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.4e-17  Score=104.81  Aligned_cols=70  Identities=27%  Similarity=0.526  Sum_probs=64.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhh
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      .+...+.++++|.|.+|++.|.....|..|+++|.                  ++++|.|.+|++.|.+...|..|+++|
T Consensus         8 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~L~~H~~~H   69 (77)
T 2cot_A            8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT------------------GEKPYKCDECGKAFIQRSHLIGHHRVH   69 (77)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC------------------CSCSEECSSSCCEESSHHHHHHHGGGS
T ss_pred             CCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcC------------------CCcCeeCCCCCCccCCHHHHHHHHHHh
Confidence            45567889999999999999999999999999886                  689999999999999999999999999


Q ss_pred             ccCCCCCC
Q 044181          114 RAAGLHGN  121 (178)
Q Consensus       114 ~~~~~~~~  121 (178)
                      .+++||.|
T Consensus        70 ~~~~p~~C   77 (77)
T 2cot_A           70 TGSGPSSG   77 (77)
T ss_dssp             CCCCCCCC
T ss_pred             CCCCCCCC
Confidence            99999876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.70  E-value=3e-20  Score=120.08  Aligned_cols=83  Identities=14%  Similarity=0.225  Sum_probs=76.6

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTH   91 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~   91 (178)
                      +++|.|.+|++.|.....|.  .|+++|++++||.|.+|++.|.....|..|+++|.                   ..+|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~--~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~-------------------~~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLT--THIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-------------------ILPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHH--HHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT-------------------HHHH
T ss_pred             CCCCcCCCCCCccCCHHHHH--HHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC-------------------CCcc
Confidence            58999999999999999995  99999999999999999999999999999999886                   4789


Q ss_pred             cCCcccccCCCchHHHHHHhhhcc
Q 044181           92 ECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        92 ~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      .|..|++.|.+...|..|++.+.+
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999986543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=2.1e-17  Score=103.18  Aligned_cols=65  Identities=23%  Similarity=0.506  Sum_probs=60.6

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ..++++++|.|.+|++.|.....|..|+++|.                  ++++|.|.+|++.|.+...|..|+++|+++
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~------------------~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHT------------------GEKPYRCNICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC------------------CCCSEECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcC------------------CCCCEECCCCCchhCCHHHHHHHHHhcCCC
Confidence            46789999999999999999999999999987                  689999999999999999999999999999


Q ss_pred             CCC
Q 044181          117 GLH  119 (178)
Q Consensus       117 ~~~  119 (178)
                      +||
T Consensus        72 kp~   74 (74)
T 2lce_A           72 KPY   74 (74)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.69  E-value=1e-17  Score=113.47  Aligned_cols=89  Identities=20%  Similarity=0.323  Sum_probs=79.8

Q ss_pred             CCCCCceecCc--CCCcCCChHHHHHHHHhcCCCCC--CC--CCCC--------ccccccCCCCCCCcCCcccccCCCch
Q 044181           39 MAAGRAFECKT--CNRQFPSFQALGGHRASHKKPRF--TD--GNGG--------VDMQQLPIKPKTHECSVCGLEFAIGQ  104 (178)
Q Consensus        39 H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~--~~--~c~~--------~~h~~~h~~~k~~~C~~Cgk~F~~~~  104 (178)
                      ++++++|.|.+  |++.|.....|..|+++|.++++  |.  .|++        ..|+++|.++++|.|++||+.|.+..
T Consensus         1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   80 (119)
T 2jp9_A            1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD   80 (119)
T ss_dssp             CCSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred             CCCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHH
Confidence            36889999997  99999999999999999987665  87  7887        68889999999999999999999999


Q ss_pred             HHHHHHhhhccCCCCCC--CCcccC
Q 044181          105 ALGGHMRRHRAAGLHGN--EKLSDL  127 (178)
Q Consensus       105 ~L~~H~~~H~~~~~~~~--~~~~~~  127 (178)
                      .|..|+++|.++++|.|  ......
T Consensus        81 ~l~~H~~~h~~~~~~~C~~~~C~~~  105 (119)
T 2jp9_A           81 HLKTHTRTHTGEKPFSCRWPSCQKK  105 (119)
T ss_dssp             HHHHHHHHHHTCCCEECCSTTCCCE
T ss_pred             HHHHHHHHhcCCCCeeCCCCCCccc
Confidence            99999999999999999  555543

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=4.5e-17  Score=100.56  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=60.0

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +|+++++|.|.+|++.|.....|..|+++|.                  ++++|.|.+|++.|.+...|..|+++|.+++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHC------------------TDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGC------------------CSCSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcC------------------CCCCEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            5889999999999999999999999999887                  6899999999999999999999999999998


Q ss_pred             CC
Q 044181          118 LH  119 (178)
Q Consensus       118 ~~  119 (178)
                      +.
T Consensus        65 p~   66 (70)
T 1x5w_A           65 SG   66 (70)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=8e-17  Score=101.26  Aligned_cols=67  Identities=21%  Similarity=0.421  Sum_probs=60.0

Q ss_pred             ccccccCCCCCceecCcCCCcCCChHHHHHHHH-hcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHh
Q 044181           33 VNGVNTMAAGRAFECKTCNRQFPSFQALGGHRA-SHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMR  111 (178)
Q Consensus        33 ~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~  111 (178)
                      ..|+++|++++||.|.+|++.|.....|..|++ .|.+                 ++++|.|++|++.|.+...|..|++
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~-----------------~~~~~~C~~C~~~f~~~~~L~~H~~   66 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE-----------------NVAKFHCPHCDTVIARKSDLGVHLR   66 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS-----------------SCSSEECSSSSCEESSHHHHHHHHH
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCC-----------------CCCccCCCCCCCccCCHHHHHHHHH
Confidence            489999999999999999999999999999997 5652                 2489999999999999999999999


Q ss_pred             hhccC
Q 044181          112 RHRAA  116 (178)
Q Consensus       112 ~H~~~  116 (178)
                      +|.+.
T Consensus        67 ~~H~~   71 (77)
T 2ct1_A           67 KQHSY   71 (77)
T ss_dssp             HTSCC
T ss_pred             HhCCC
Confidence            86544

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=3.3e-18  Score=109.49  Aligned_cols=79  Identities=13%  Similarity=0.218  Sum_probs=71.2

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCC----CceecCcCCCcCCChHHHHHHHHhcCCCCCCCCC
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAG----RAFECKTCNRQFPSFQALGGHRASHKKPRFTDGN   76 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~----k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c   76 (178)
                      |++|++.|++ +++|.|.+|++.|.+...|.  .|+++|.++    ++|.|.+|++.|.....|..|+++|.        
T Consensus         3 ~~~H~~~H~~-~k~~~C~~C~~~f~~~~~l~--~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~--------   71 (86)
T 1x6h_A            3 SGSSGRTHTG-EKPYACSHCDKTFRQKQLLD--MHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA--------   71 (86)
T ss_dssp             TTCCSTTCCC-CCCEECSSSSCEESSHHHHH--HHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCC--------
T ss_pred             cccccceecC-CCCCcCCCCCCccCCHHHHH--HHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHcc--------
Confidence            6899999988 99999999999999998885  898776654    79999999999999999999999987        


Q ss_pred             CCccccccCCCCCCCcCCcccccC
Q 044181           77 GGVDMQQLPIKPKTHECSVCGLEF  100 (178)
Q Consensus        77 ~~~~h~~~h~~~k~~~C~~Cgk~F  100 (178)
                                +++++.|..||..|
T Consensus        72 ----------~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           72 ----------GPDGVEGENSGPSS   85 (86)
T ss_dssp             ----------CCCSCCCCCCCCCC
T ss_pred             ----------CCCCcccCCCCCCC
Confidence                      57889999998865

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=4.4e-17  Score=110.95  Aligned_cols=90  Identities=22%  Similarity=0.276  Sum_probs=80.0

Q ss_pred             CCCCceecCcCCCcCCChHHHHHHHHhcCCCCC--CCCCCC--------ccccc---cCCCCCCCcCCcccccCCCchHH
Q 044181           40 AAGRAFECKTCNRQFPSFQALGGHRASHKKPRF--TDGNGG--------VDMQQ---LPIKPKTHECSVCGLEFAIGQAL  106 (178)
Q Consensus        40 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~--~~~c~~--------~~h~~---~h~~~k~~~C~~Cgk~F~~~~~L  106 (178)
                      +++++|.|.+|++.|.....|..|+++|.++++  |..|++        ..|+.   .+.++++|.|++|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            578999999999999999999999999987654  888886        56766   46789999999999999999999


Q ss_pred             HHHHhhhccCCCCCCCCcccCcC
Q 044181          107 GGHMRRHRAAGLHGNEKLSDLSG  129 (178)
Q Consensus       107 ~~H~~~H~~~~~~~~~~~~~~~~  129 (178)
                      ..|+++|.++++|.|........
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~~f~  105 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQQFM  105 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCCEES
T ss_pred             HHHHHHcCCCCCccCCCccchhC
Confidence            99999999999999988765444

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=5.8e-17  Score=102.08  Aligned_cols=70  Identities=20%  Similarity=0.409  Sum_probs=60.3

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHH-hhhccC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHM-RRHRAA  116 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~-~~H~~~  116 (178)
                      +|++++||.|.+|++.|.....|..|+++|.+.               .++++|.|.+|++.|.+...|..|+ +.|.++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~---------------~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAET---------------VAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHH---------------TTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc---------------CCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999998631               1378999999999999999999999 567777


Q ss_pred             CCCCCC
Q 044181          117 GLHGNE  122 (178)
Q Consensus       117 ~~~~~~  122 (178)
                      .+....
T Consensus        66 ~~~~~~   71 (78)
T 2d9h_A           66 LLAPQE   71 (78)
T ss_dssp             SSCCSS
T ss_pred             CCCccc
Confidence            755443

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=4e-18  Score=107.54  Aligned_cols=70  Identities=17%  Similarity=0.321  Sum_probs=65.5

Q ss_pred             Ccccchhh--hHHHhcCCCCCCcccccc-cCCCCCceecCc--CCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCC
Q 044181           12 DHSLNMAN--CLMFLSHGRGFNAVNGVN-TMAAGRAFECKT--CNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPI   86 (178)
Q Consensus        12 ~~~~~C~~--C~~~f~~~~~l~~~~h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~   86 (178)
                      +++|.|..  |++.|.+...|.  .|++ +|+++++|.|.+  |++.|.....|..|+++|+                  
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~--~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~------------------   64 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLN--HHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS------------------   64 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHH--HHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHH------------------
T ss_pred             CCCccCCCCCCcCccCCHHHHH--HHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhC------------------
Confidence            78999997  999999999995  8998 799999999999  9999999999999999987                  


Q ss_pred             CCCCCcCCcccccCC
Q 044181           87 KPKTHECSVCGLEFA  101 (178)
Q Consensus        87 ~~k~~~C~~Cgk~F~  101 (178)
                      +++||.|++||+.|.
T Consensus        65 ~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           65 DTRDYICEFSGPSSG   79 (79)
T ss_dssp             TSCCCSCCSSSCCCC
T ss_pred             CCCCeeCCCCCCCCC
Confidence            689999999999984

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.66  E-value=7.3e-17  Score=103.74  Aligned_cols=65  Identities=20%  Similarity=0.343  Sum_probs=59.0

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHH-hhh
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHM-RRH  113 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~-~~H  113 (178)
                      .+.++...++|.|++|++.|....+|.+|+++|+                  +++||.|++|++.|.+...|.+|+ ++|
T Consensus        19 ~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~------------------~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           19 VLGLSASAECHLCPVCGESFASKGAQERHLRLLH------------------AAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTS------------------CSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhcc------------------CCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            4567888999999999999999999999999887                  689999999999999999999997 578


Q ss_pred             ccCC
Q 044181          114 RAAG  117 (178)
Q Consensus       114 ~~~~  117 (178)
                      +++.
T Consensus        81 ~~E~   84 (85)
T 2lv2_A           81 PSEN   84 (85)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            8764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=5.8e-17  Score=107.73  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=64.8

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHH-hcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHH-Hhhhc
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRA-SHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGH-MRRHR  114 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H-~~~H~  114 (178)
                      ..-+|++||.|.+|++.|...+.|..|++ +|++.               ++++||.|.+||+.|.+.+.|..| +++|+
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~---------------~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV---------------VLNSSYVCVECNFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC---------------CCSCCEEETTTTEEESSTHHHHTHHHHTST
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC---------------CCCCCcCCCCCCcccCCHHHHHHHHHHhcC
Confidence            44579999999999999999999999997 58431               268999999999999999999999 89999


Q ss_pred             cCCCCCCCCc
Q 044181          115 AAGLHGNEKL  124 (178)
Q Consensus       115 ~~~~~~~~~~  124 (178)
                      +++||.|...
T Consensus        76 gekpy~C~~~   85 (102)
T 2ghf_A           76 GEENFKLTMV   85 (102)
T ss_dssp             TCCCEEEEEC
T ss_pred             CCCCeeCCcc
Confidence            9999999763

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.65  E-value=2.8e-18  Score=109.42  Aligned_cols=78  Identities=15%  Similarity=0.234  Sum_probs=72.9

Q ss_pred             ccch--hhhHHHhcCCCCCCcccccccCCCCCceecCc--CCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCC
Q 044181           14 SLNM--ANCLMFLSHGRGFNAVNGVNTMAAGRAFECKT--CNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPK   89 (178)
Q Consensus        14 ~~~C--~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k   89 (178)
                      ||.|  ..|++.|.....|.  .|+++|+++++|.|++  |++.|.....|..|+++|+                  +  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~------------------~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLK--VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA------------------G--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHH--HHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH------------------S--
T ss_pred             CccCCCCCCCcccCCHHHHH--HHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC------------------C--
Confidence            6899  99999999999995  8999999999999988  9999999999999999987                  3  


Q ss_pred             CCcCCc---ccccCCCchHHHHHHhhhc
Q 044181           90 THECSV---CGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        90 ~~~C~~---Cgk~F~~~~~L~~H~~~H~  114 (178)
                       |.|.+   |++.|.+...|..|+++|+
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence             89999   9999999999999999874

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=5e-17  Score=106.91  Aligned_cols=76  Identities=17%  Similarity=0.249  Sum_probs=66.0

Q ss_pred             HhcCCCCCCcccccccCCCCCceecCcCCCcC-CChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCC
Q 044181           23 FLSHGRGFNAVNGVNTMAAGRAFECKTCNRQF-PSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFA  101 (178)
Q Consensus        23 ~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f-~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~  101 (178)
                      .|.....|.  .|+++|+++++|.|++|++.| ....+|..|+++| +                  +++|.|.+||+.|.
T Consensus        15 ~~~~~~~~~--~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~------------------~k~~~C~~Cgk~F~   73 (96)
T 2ctd_A           15 VYAAGSLEE--QWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-K------------------QEMFTCHHCGKQLR   73 (96)
T ss_dssp             SSCTTCHHH--HHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-C------------------CCCCCCSSSCCCCS
T ss_pred             CCCCchHHH--HHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-C------------------CCCeECCCCCCeeC
Confidence            445555554  788899999999999999999 9999999999988 4                  78999999999999


Q ss_pred             CchHHHHH-HhhhccCCCC
Q 044181          102 IGQALGGH-MRRHRAAGLH  119 (178)
Q Consensus       102 ~~~~L~~H-~~~H~~~~~~  119 (178)
                      +...|..| +++|+++..+
T Consensus        74 ~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           74 SLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             SHHHHHHHHHHHTCCCSSC
T ss_pred             CHHHHHHHhHHhcCCCCCC
Confidence            99999999 8999876433

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.64  E-value=6.8e-18  Score=119.68  Aligned_cols=91  Identities=11%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             Ccccccc-cCCCCcc--------cchhhhHHHhcCCCCCCcccccccCCCCCceecCc--CCCcCCChHHHHHHHHhcCC
Q 044181            1 MKRAFQE-SSELDHS--------LNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKT--CNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus         1 lkr~~~~-~~~~~~~--------~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |++|... |.+ +.+        |.|..|++.|.....|.  .|+++|+++++|.|.+  |++.|.....|..|+++|++
T Consensus        41 L~~H~~~~H~~-~~~~~~~~~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  117 (155)
T 2rpc_A           41 LVTHVTMEHVG-GPEQNNHVCYWEECPREGKSFKAKYKLV--NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG  117 (155)
T ss_dssp             HHHHHHTTTSC-CTTCSSCCCCBTTCTTSSCCCSSHHHHH--HHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCS
T ss_pred             HHHHHHhhcCC-CcccCCccccccCCCCcccccCCHHHHH--HHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCC
Confidence            4678776 654 443        89999999999998885  8999999999999998  99999999999999999988


Q ss_pred             CCC--CCC--CCC--------ccccccCCCCCCCcCC
Q 044181           70 PRF--TDG--NGG--------VDMQQLPIKPKTHECS   94 (178)
Q Consensus        70 ~~~--~~~--c~~--------~~h~~~h~~~k~~~C~   94 (178)
                      +++  |..  |++        ..|+++|++++||.|.
T Consensus       118 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             SCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            765  875  887        6899999999999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.2e-16  Score=97.36  Aligned_cols=63  Identities=22%  Similarity=0.437  Sum_probs=57.0

Q ss_pred             cccCCCCCceecCcCCCcCCChHHHHHHHHh-cCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           36 VNTMAAGRAFECKTCNRQFPSFQALGGHRAS-HKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        36 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      +++|++++||.|++|++.|....+|..|+++ |.                 +++++|.|++||+.|.+.+.|..|+++|.
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~-----------------~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK-----------------RNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS-----------------SSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcC-----------------CCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            4689999999999999999999999999987 62                 16899999999999999999999999887


Q ss_pred             c
Q 044181          115 A  115 (178)
Q Consensus       115 ~  115 (178)
                      +
T Consensus        65 ~   65 (66)
T 2drp_A           65 K   65 (66)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.9e-17  Score=103.33  Aligned_cols=63  Identities=21%  Similarity=0.394  Sum_probs=56.7

Q ss_pred             ccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181            3 RAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus         3 r~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      ++...+.+ +++|.|.+|++.|.+...|.  .|+++|+++++|.|.+|++.|.....|..|+++|+
T Consensus         8 ~~~~~~~~-~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A            8 RSEWQQRE-RRRYKCDECGKSFSHSSDLS--KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             CCCSCCCC-SCSSBCSSSCCBCSCHHHHH--HHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSC
T ss_pred             CCcCcCCC-CCCEECCCCCcccCCHHHHH--HHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhC
Confidence            34445545 89999999999999999995  99999999999999999999999999999999887

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.62  E-value=7.5e-16  Score=105.04  Aligned_cols=89  Identities=22%  Similarity=0.365  Sum_probs=76.3

Q ss_pred             CCCceecC--cCCCcCCChHHHHHHHHhcCCCCC--CCCCCC--------ccccccCCCCCCCcCCc--ccccCCCchHH
Q 044181           41 AGRAFECK--TCNRQFPSFQALGGHRASHKKPRF--TDGNGG--------VDMQQLPIKPKTHECSV--CGLEFAIGQAL  106 (178)
Q Consensus        41 ~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~--~~~c~~--------~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L  106 (178)
                      ++++|.|+  .|++.|.....|..|+++| ++++  |..|++        ..|+++|.++++|.|.+  |++.|.+...|
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            46899999  8999999999999999999 5444  899987        68999999999999986  99999999999


Q ss_pred             HHHHhhhccCCCCCCC--CcccCcCC
Q 044181          107 GGHMRRHRAAGLHGNE--KLSDLSGL  130 (178)
Q Consensus       107 ~~H~~~H~~~~~~~~~--~~~~~~~~  130 (178)
                      ..|+++|.++++|.|.  ........
T Consensus        81 ~~H~~~h~~~~~~~C~~~~C~~~f~~  106 (124)
T 1ubd_C           81 RTHVRIHTGDRPYVCPFDGCNKKFAQ  106 (124)
T ss_dssp             HHHHHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             HHHHHHhCCCCceECCCCCCCCccCC
Confidence            9999999999999995  46554443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.62  E-value=3.7e-17  Score=112.57  Aligned_cols=85  Identities=20%  Similarity=0.223  Sum_probs=71.7

Q ss_pred             CcccchhhhHHHhcCCCCCC----cccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFN----AVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIK   87 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~----~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~   87 (178)
                      ++.+.|.+|++.|.+...+.    +..| ..|++++||.|.+|++.|....+|..|+++|                    
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h-~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--------------------   97 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYT--------------------   97 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHH-HHHHHHCSEECTTTCCEESSHHHHHHHHHHT--------------------
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHH-HHhCCCCCeECCCCCcccCCHhHHHHHHHHC--------------------
Confidence            57889999999998332221    0234 4689999999999999999999999999987                    


Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ++||.|++||+.|.+.+.|..|+++|++.-
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            367999999999999999999999998874

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.60  E-value=5.6e-16  Score=91.54  Aligned_cols=57  Identities=28%  Similarity=0.448  Sum_probs=48.8

Q ss_pred             CCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhcc
Q 044181           41 AGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        41 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |+++|.|.+|++.|.....|..|+++|+                  +++||.|++|++.|.+...|..|+++|.+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHT------------------GEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHH------------------CCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcC------------------CCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            5789999999999999999999999887                  58899999999999999999999998864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=3.6e-15  Score=93.80  Aligned_cols=70  Identities=26%  Similarity=0.428  Sum_probs=64.3

Q ss_pred             CCCCCceecCc--CCCcCCChHHHHHHHH-hcCCCCCCCCCCCccccccCCCCCCCcCCc--ccccCCCchHHHHHHhhh
Q 044181           39 MAAGRAFECKT--CNRQFPSFQALGGHRA-SHKKPRFTDGNGGVDMQQLPIKPKTHECSV--CGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        39 H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H  113 (178)
                      .+++++|.|..  |++.|.....|..|++ .|.                  ++++|.|++  |++.|.+...|..|+++|
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~------------------~~~~~~C~~~~C~k~f~~~~~L~~H~~~H   63 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI------------------HQKSFSCPEPACGKSFNFKKHLKEHMKLH   63 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGG------------------SCCCEECSCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhC------------------CCCCeECCCCCCcCccCCHHHHHHHHHHh
Confidence            36789999997  9999999999999998 676                  689999999  999999999999999999


Q ss_pred             ccCCCCCCCCccc
Q 044181          114 RAAGLHGNEKLSD  126 (178)
Q Consensus       114 ~~~~~~~~~~~~~  126 (178)
                      .++++|.|+....
T Consensus        64 ~~~~~~~C~~C~k   76 (79)
T 2dlk_A           64 SDTRDYICEFSGP   76 (79)
T ss_dssp             HTSCCCSCCSSSC
T ss_pred             CCCCCeeCCCCCC
Confidence            9999999988754

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2.8e-17  Score=108.32  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CcccccccCCCCcccchhhhHHHhc-CCCCCCcccccccCCC-CCceecCcCCCcCCChHHHHHHHHhcCCCCC
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLS-HGRGFNAVNGVNTMAA-GRAFECKTCNRQFPSFQALGGHRASHKKPRF   72 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~-~~~~l~~~~h~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   72 (178)
                      +.+|++.|++ +++|.|.+|++.|. +...|.  .|+++|++ +++|.|.+|++.|.....|..|+++|+++++
T Consensus        12 ~~~h~~~h~~-~~~~~C~~C~k~f~~~~~~L~--~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           12 EEQWQRAIHE-RGEAVCPTCNVVTRKTLVGLK--KHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CSHHHHTTTT-TSCCCCTTTCCCCSSCSHHHH--HHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             HHHHHHHhcc-CCCcCCCCCCCChhhhHHHHH--HHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4688999987 99999999999999 998885  99999999 9999999999999999999999999986554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.57  E-value=2.3e-15  Score=88.84  Aligned_cols=56  Identities=20%  Similarity=0.457  Sum_probs=53.0

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ||.|.+|++.|.....|..|+++|.                  ++++|.|++||+.|.+...|..|+++|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT------------------DVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS------------------SCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC------------------CCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            6999999999999999999999987                  6899999999999999999999999998875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=2.7e-15  Score=100.31  Aligned_cols=75  Identities=20%  Similarity=0.371  Sum_probs=68.6

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ..|+++++|.| .|++.|.....|..|++.|.                  ++++|.|.+|++.|.+...|..|+++|.++
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   63 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL------------------GLRPYGCGVCGKKFKMKHHLVGHMKIHTGI   63 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHS------------------CCCSEECTTTSCEESSSHHHHHHHTTTCCC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcC------------------CCcCccCCCCCcccCCHHHHHHHHHHcCCC
Confidence            46899999999 99999999999999999987                  578999999999999999999999999999


Q ss_pred             CCCCCCCcccCcCC
Q 044181          117 GLHGNEKLSDLSGL  130 (178)
Q Consensus       117 ~~~~~~~~~~~~~~  130 (178)
                      ++|.|.........
T Consensus        64 ~~~~C~~C~~~f~~   77 (110)
T 2csh_A           64 KPYECNICAKRFMW   77 (110)
T ss_dssp             CCEECSSSCCEESC
T ss_pred             CCeeCCCCcchhcC
Confidence            99999987665443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.56  E-value=4.3e-15  Score=96.77  Aligned_cols=75  Identities=20%  Similarity=0.314  Sum_probs=68.1

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .+.++++|.|.+|++.|.....|..|+++|.                  ++++|.|.+|++.|.+...|..|+++|.+++
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   63 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHT------------------GVKPYKCKTCDYAAADSSSLNKHLRIHSDER   63 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCC------------------CCCSEECSSSCCEESSHHHHHHHHHHSCCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcC------------------CCCCEeCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            4678999999999999999999999999886                  5889999999999999999999999999999


Q ss_pred             CCCCCCcccCcCC
Q 044181          118 LHGNEKLSDLSGL  130 (178)
Q Consensus       118 ~~~~~~~~~~~~~  130 (178)
                      +|.|.........
T Consensus        64 ~~~C~~C~~~f~~   76 (96)
T 2dmd_A           64 PFKCQICPYASRN   76 (96)
T ss_dssp             CEECSSSSCEESS
T ss_pred             CccCCCCCCccCC
Confidence            9999987655443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=6.7e-17  Score=107.40  Aligned_cols=66  Identities=15%  Similarity=0.251  Sum_probs=59.6

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccc-cC---CCCCceecCcCCCcCCChHHHHHH-HHhcCCCCCCCCCCCccccccCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVN-TM---AAGRAFECKTCNRQFPSFQALGGH-RASHKKPRFTDGNGGVDMQQLPI   86 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~-~H---~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~~~~~~c~~~~h~~~h~   86 (178)
                      ++||.|..|++.|.+...|.  .|++ +|   ++++||.|.+||+.|...+.|..| +++|+                  
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~--~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht------------------   75 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFT--FHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP------------------   75 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHH--HHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST------------------
T ss_pred             CcCcCCCCCCCccCCHHHHH--HHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC------------------
Confidence            89999999999999999995  8987 59   678999999999999999999999 78887                  


Q ss_pred             CCCCCcCCccc
Q 044181           87 KPKTHECSVCG   97 (178)
Q Consensus        87 ~~k~~~C~~Cg   97 (178)
                      |++||.|.++.
T Consensus        76 gekpy~C~~~~   86 (102)
T 2ghf_A           76 GEENFKLTMVK   86 (102)
T ss_dssp             TCCCEEEEECC
T ss_pred             CCCCeeCCccc
Confidence            68999998743

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=3.2e-16  Score=98.45  Aligned_cols=65  Identities=12%  Similarity=0.212  Sum_probs=60.0

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccc-cCCCC-CceecCcCCCcCCChHHHHHHHHhcC
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVN-TMAAG-RAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~-~H~~~-k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |+||.+.|++ +++|.|.+|++.|.+...|.  .|++ +|+++ ++|.|.+|++.|.....|..|++++.
T Consensus         3 ~~~H~~~H~~-~k~~~C~~C~k~f~~~~~L~--~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            3 SGSSGRTHSG-EKPYECYICHARFTQSGTMK--MHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCCSC-CCSEECTTTCCEESCHHHHH--HHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CCccccccCC-CCCeECCCcCchhCCHHHHH--HHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            6899999988 99999999999999999995  8986 78875 89999999999999999999999864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=3.8e-17  Score=110.29  Aligned_cols=90  Identities=8%  Similarity=-0.067  Sum_probs=62.8

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCccccccc--CCCCCcee-cCcCCCcC--CChHHHHHHHHhcCCCCC--C
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNT--MAAGRAFE-CKTCNRQF--PSFQALGGHRASHKKPRF--T   73 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~--H~~~k~~~-C~~C~k~f--~~~~~L~~H~~~h~~~~~--~   73 (178)
                      |++|.+.|++ +++|.|.+|++.|.+...|.  .|+++  |.+++++. |.+|++.|  .....|..|+++|+++++  |
T Consensus         7 l~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~--~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A            7 GKLYGSIFTG-ASKFRCKDCSAAYDTLVELT--VHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCCC-CCSEEBSSSSCEESSHHHHH--HHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             hhhheeeeCC-CCCEECCccCchhcCHHHHH--HHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            6788888866 78888888888887777774  67776  66666554 77777777  777777777777766554  6


Q ss_pred             CCCCC--------ccccccCCCCCCCcC
Q 044181           74 DGNGG--------VDMQQLPIKPKTHEC   93 (178)
Q Consensus        74 ~~c~~--------~~h~~~h~~~k~~~C   93 (178)
                      ..|++        ..|++.|.......+
T Consensus        84 ~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           84 MYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             SSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            77765        456666555444433

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=7.6e-17  Score=99.84  Aligned_cols=68  Identities=15%  Similarity=0.174  Sum_probs=60.3

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCcc
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVD   80 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~   80 (178)
                      |++|.+.|++ +++|.|.+|++.|.....|.  .       +++|.|.+|++.|...+.|..|+++|+            
T Consensus         6 l~~H~~~h~~-~~~~~C~~C~k~f~~~~~l~--~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~------------   63 (73)
T 2ctu_A            6 SGKRQKIHLG-DRSQKCSKCGIIFIRRSTLS--R-------RKTPMCEKCRKDSCQEAALNKDEGNES------------   63 (73)
T ss_dssp             CCCCCCCCCC-CSEEECSSSCCEEECCCCCC--C-------SSSCCCHHHHHTCSCCCSSCCCSSCCC------------
T ss_pred             HHHHHHHhCC-CCCeeCCcccchhCCHHHhC--c-------CCCCCCCCCChhhcCHHHHHHHHHhhc------------
Confidence            7899999977 99999999999999998885  2       789999999999999999988877665            


Q ss_pred             ccccCCCCCCCcCCcc
Q 044181           81 MQQLPIKPKTHECSVC   96 (178)
Q Consensus        81 h~~~h~~~k~~~C~~C   96 (178)
                            ++++|.|++|
T Consensus        64 ------~~~~~~C~~C   73 (73)
T 2ctu_A           64 ------GKKTSGPSSG   73 (73)
T ss_dssp             ------CCCCSSCCCC
T ss_pred             ------CCCCCCCCCC
Confidence                  6889999887

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=3.2e-16  Score=96.68  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=57.5

Q ss_pred             ccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCC
Q 044181            7 ESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRF   72 (178)
Q Consensus         7 ~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   72 (178)
                      .|++ +++|.|.+|++.|.+...|.  .|+++|+++++|.|.+|++.|.....|..|+++|.++++
T Consensus         3 s~~~-~~~~~C~~C~k~f~~~~~L~--~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            3 SGSS-GHPEKCSECSYSCSSKAALR--IHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SCCC-CCSEECSSSSCEESSHHHHH--HHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCC-CCCeECCCCCcccCCHHHHH--HHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            3555 89999999999999999995  999999999999999999999999999999999986554

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.2e-14  Score=94.46  Aligned_cols=73  Identities=23%  Similarity=0.414  Sum_probs=66.4

Q ss_pred             CCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccC--C
Q 044181           40 AAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA--G  117 (178)
Q Consensus        40 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~--~  117 (178)
                      +++++|.|.+|++.|.....|..|+++|.                  ++++|.|.+|++.|.+...|..|+++|.++  +
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   64 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS------------------GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK   64 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC------------------SSCSEECSSSCCEESCHHHHHHHHHHHCCCCCS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC------------------CCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            57899999999999999999999999887                  588999999999999999999999999997  8


Q ss_pred             CCCCCCcccCcCC
Q 044181          118 LHGNEKLSDLSGL  130 (178)
Q Consensus       118 ~~~~~~~~~~~~~  130 (178)
                      +|.|.........
T Consensus        65 ~~~C~~C~~~f~~   77 (95)
T 2yt9_A           65 PYICQSCGKGFSR   77 (95)
T ss_dssp             SBCCSSSCCCBSS
T ss_pred             ceECCCccchhCC
Confidence            9999888654443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.53  E-value=2.9e-14  Score=94.52  Aligned_cols=76  Identities=20%  Similarity=0.280  Sum_probs=68.6

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ....++++|.|.+|++.|.....|..|+++|.                  ++++|.|.+|++.|.+...|..|+++|.++
T Consensus        10 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   71 (106)
T 2ee8_A           10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHT------------------DERPYTCDICHKAFRRQDHLRDHRYIHSKE   71 (106)
T ss_dssp             CCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHC------------------CSCCCBCSSSCCBCSCHHHHHHHGGGSCCC
T ss_pred             CCcCCCcCeECCCCCCccCCHHHHHHHHHHcC------------------CCCCcCCCCccchhCCHHHHHHHHHHhCCC
Confidence            34567899999999999999999999999987                  588999999999999999999999999999


Q ss_pred             CCCCCCCcccCcCC
Q 044181          117 GLHGNEKLSDLSGL  130 (178)
Q Consensus       117 ~~~~~~~~~~~~~~  130 (178)
                      ++|.|.........
T Consensus        72 ~~~~C~~C~~~f~~   85 (106)
T 2ee8_A           72 KPFKCQECGKGFCQ   85 (106)
T ss_dssp             CTTSCSSSCCCCSS
T ss_pred             CCeECCCcCCcccC
Confidence            99999988665443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=5.1e-15  Score=98.60  Aligned_cols=76  Identities=16%  Similarity=0.284  Sum_probs=68.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhh
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      .++++|+++++|.|.+|++.|.....|..|+++|.                    ++|.|.+|++.|.....|..|++ |
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--------------------~~~~C~~C~~~f~~~~~l~~H~~-H   64 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--------------------NAAVCPYCSLRFFSPELKQEHES-K   64 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--------------------HSBCCTTTCCCBSSHHHHHHHHH-H
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--------------------CCccCCCCCCccCCHHHHHHHHH-c
Confidence            57789999999999999999999999999999873                    47999999999999999999996 9


Q ss_pred             ccCCCCCCCCcccCcCC
Q 044181          114 RAAGLHGNEKLSDLSGL  130 (178)
Q Consensus       114 ~~~~~~~~~~~~~~~~~  130 (178)
                      .++++|.|.........
T Consensus        65 ~~~~~~~C~~C~~~f~~   81 (107)
T 1wjp_A           65 CEYKKLTCLECMRTFKS   81 (107)
T ss_dssp             CSTGGGEEGGGTEECSS
T ss_pred             CCCCCccCccccchhCC
Confidence            99999999987665543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2.3e-16  Score=97.67  Aligned_cols=70  Identities=17%  Similarity=0.229  Sum_probs=62.6

Q ss_pred             CCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHH
Q 044181           27 GRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQAL  106 (178)
Q Consensus        27 ~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L  106 (178)
                      ...|.  .|+++|+++++|.|.+|++.|.....|..                         +++|.|++||+.|.+...|
T Consensus         3 ~~~l~--~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------------------------~~~~~C~~C~~~f~~~~~l   55 (73)
T 2ctu_A            3 SGSSG--KRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------------------------RKTPMCEKCRKDSCQEAAL   55 (73)
T ss_dssp             CCSCC--CCCCCCCCCSEEECSSSCCEEECCCCCCC-------------------------SSSCCCHHHHHTCSCCCSS
T ss_pred             chhHH--HHHHHhCCCCCeeCCcccchhCCHHHhCc-------------------------CCCCCCCCCChhhcCHHHH
Confidence            45564  89999999999999999999998877653                         5789999999999999999


Q ss_pred             HHHHhhhccCCCCCCCC
Q 044181          107 GGHMRRHRAAGLHGNEK  123 (178)
Q Consensus       107 ~~H~~~H~~~~~~~~~~  123 (178)
                      ..|+++|.++++|.|+.
T Consensus        56 ~~H~~~H~~~~~~~C~~   72 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSS   72 (73)
T ss_dssp             CCCSSCCCCCCCSSCCC
T ss_pred             HHHHHhhcCCCCCCCCC
Confidence            99999999999999864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=3e-16  Score=97.36  Aligned_cols=64  Identities=14%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             cccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181            4 AFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus         4 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +.+.|++ +++|.|.+|++.|.+...|.  .|+++|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         5 ~~~~H~~-~k~~~C~~C~k~f~~~~~L~--~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            5 SSGIHSG-EKPYGCVECGKAFSRSSILV--QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCTTTT-CCCEECSSSCCEESSHHHHH--HHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccCC-CCCccCCCCCCccCCHHHHH--HHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            4567877 99999999999999999995  9999999999999999999999999999999999754

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.53  E-value=4.8e-16  Score=96.91  Aligned_cols=57  Identities=16%  Similarity=0.320  Sum_probs=54.2

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +++|.|..|++.|.+...|.  .|+++|+++++|+|.+|++.|.....|..|+++|+++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~--~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLA--SHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHH--HHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred             CCCeECCCCCceeCCHHHHH--HHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCC
Confidence            89999999999999999995  9999999999999999999999999999999999854

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=8.4e-15  Score=87.35  Aligned_cols=57  Identities=30%  Similarity=0.546  Sum_probs=52.4

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHH-hhhccCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHM-RRHRAAG  117 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~-~~H~~~~  117 (178)
                      +||.|.+|++.|.....|..|+++|+                  ++++|.|++|++.|.+...|..|+ ++|.++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT------------------NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT------------------SSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC------------------CCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            58999999999999999999999887                  689999999999999999999997 6888764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=6.1e-16  Score=99.40  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             CCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHH-HhcCCC
Q 044181           11 LDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHR-ASHKKP   70 (178)
Q Consensus        11 ~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~   70 (178)
                      ++++|.|.+||+.|.+...|.  .|+++|++++||.|++|++.|....+|.+|+ ++|+++
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~--~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQE--RHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHH--HHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCEECCCCCCCcCcHHHHh--hhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            378999999999999999996  9999999999999999999999999999997 568754

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=7.4e-15  Score=91.07  Aligned_cols=61  Identities=26%  Similarity=0.562  Sum_probs=56.3

Q ss_pred             cccCCCCCceecC--cCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhh
Q 044181           36 VNTMAAGRAFECK--TCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        36 ~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      ..+|+++++|.|.  .|++.|.....|..|+++|.                  ++++|.|++||+.|.+...|..|+++|
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT------------------GQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH------------------CCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC------------------CCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            3678999999997  59999999999999999987                  688999999999999999999999988


Q ss_pred             c
Q 044181          114 R  114 (178)
Q Consensus       114 ~  114 (178)
                      +
T Consensus        73 t   73 (73)
T 1f2i_G           73 T   73 (73)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3.6e-16  Score=102.79  Aligned_cols=64  Identities=19%  Similarity=0.366  Sum_probs=57.6

Q ss_pred             ccccccCCCCcccchhhhHHHh-cCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHH-HHhcCCC
Q 044181            3 RAFQESSELDHSLNMANCLMFL-SHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGH-RASHKKP   70 (178)
Q Consensus         3 r~~~~~~~~~~~~~C~~C~~~f-~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~   70 (178)
                      +|.+.|.+ +++|.|.+|++.| .+...|.  .|+++| ++++|.|.+|++.|...+.|..| +++|+++
T Consensus        24 ~~~~~~~~-~~~~~C~~C~k~F~~~~~~L~--~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           24 QWYLEIVD-KGSVSCPTCQAVGRKTIEGLK--KHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             HHHHHHHH-TSCEECTTTCSCEESSHHHHH--HHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             HHHHHhcC-CCCcCCCCCCCCcccCHHHHH--HHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            45666666 8999999999999 8999995  999999 99999999999999999999999 8999753

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.50  E-value=1.2e-14  Score=93.40  Aligned_cols=71  Identities=23%  Similarity=0.456  Sum_probs=63.4

Q ss_pred             CCCceecC--cCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           41 AGRAFECK--TCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        41 ~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      |++||.|.  .|++.|.....|..|+++|.                  ++++|.|.+|++.|.+...|..|+++|.++++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   62 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHT------------------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP   62 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHH------------------CCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhC------------------CCCCccCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            57899998  69999999999999999987                  57899999999999999999999999999999


Q ss_pred             CCCCCcccCcC
Q 044181          119 HGNEKLSDLSG  129 (178)
Q Consensus       119 ~~~~~~~~~~~  129 (178)
                      |.|........
T Consensus        63 ~~C~~C~~~f~   73 (90)
T 1a1h_A           63 FACDICGRKFA   73 (90)
T ss_dssp             EECTTTCCEES
T ss_pred             ccCCCCCchhC
Confidence            99988765443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.48  E-value=2.5e-14  Score=90.27  Aligned_cols=68  Identities=22%  Similarity=0.428  Sum_probs=62.4

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      ||.|.+|++.|.....|..|+++|.                  ++++|.|..|++.|.+...|..|+++|.++++|.|..
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   62 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS------------------DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV   62 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH------------------TCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTT
T ss_pred             CccCCCCcccccCchhHHHHHHHcC------------------CCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCC
Confidence            6999999999999999999999987                  5789999999999999999999999999999999988


Q ss_pred             cccCcC
Q 044181          124 LSDLSG  129 (178)
Q Consensus       124 ~~~~~~  129 (178)
                      ......
T Consensus        63 C~~~f~   68 (82)
T 2kmk_A           63 CGKAFS   68 (82)
T ss_dssp             TSCEES
T ss_pred             cchhhC
Confidence            765433

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=89.64  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=57.0

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHh-cCCCCC--CCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRAS-HKKPRF--TDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~--~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      ...|.|..|++.|.....|..|+++ |.++++  +..            -+.|.|.+||+.|.+...|..|+++|+++++
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~------------c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV------------CYWEECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCC------------CCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccc------------eeccCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3457899999999999999999998 764321  000            1229999999999999999999999999999


Q ss_pred             CCCC
Q 044181          119 HGNE  122 (178)
Q Consensus       119 ~~~~  122 (178)
                      |.|+
T Consensus        91 ~~C~   94 (95)
T 2ej4_A           91 GPSS   94 (95)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            9985

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.4e-14  Score=78.76  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT------------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS------------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                  6889999876

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.46  E-value=2.5e-15  Score=88.68  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=52.0

Q ss_pred             ccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           14 SLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        14 ~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      ||.|..|++.|.+...|.  .|+++|+++++|.|++|++.|.....|..|+++|.++
T Consensus         1 p~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLK--KHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHH--HHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHH--HHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            699999999999999995  9999999999999999999999999999999999764

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.1e-14  Score=78.79  Aligned_cols=46  Identities=17%  Similarity=0.242  Sum_probs=42.3

Q ss_pred             ccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           33 VNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        33 ~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      ++|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2eme_A            1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC------------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            368999999999999999999999999999999887                  6889999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.46  E-value=8.8e-14  Score=78.51  Aligned_cols=45  Identities=22%  Similarity=0.370  Sum_probs=42.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS------------------SCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                  6889999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.7e-14  Score=78.49  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS------------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999887                  6889999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=6.2e-14  Score=79.14  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=42.1

Q ss_pred             ccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           33 VNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        33 ~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      ++|+++|+++++|.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2em5_A            1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS------------------CSCCSSCCCC
T ss_pred             CCCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            368999999999999999999999999999999887                  6889999887

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.4e-15  Score=89.76  Aligned_cols=55  Identities=18%  Similarity=0.301  Sum_probs=49.9

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      +++|.|.+|++.|.+...|.  .|+++|++++||.|.+|++.|.....|..|+++|.
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLN--IHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHH--HHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHH--HHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            68999999999999999995  99999999999999999999999999999999885

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=8.8e-14  Score=78.45  Aligned_cols=45  Identities=20%  Similarity=0.344  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS------------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999887                  6889999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=6.1e-14  Score=79.17  Aligned_cols=45  Identities=20%  Similarity=0.339  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...++|..|+++|+                  +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF------------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH------------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                  5889999877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.45  E-value=9.6e-14  Score=78.29  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS------------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC------------------CCCCcCCCCC
Confidence            58999999999999999999999999999999887                  6889999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=9e-14  Score=78.36  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS------------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999987                  6889999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=9.6e-14  Score=78.24  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC------------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                  6889999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.2e-13  Score=77.89  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT------------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT------------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999987                  6889999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=9.3e-14  Score=78.35  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS------------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS------------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999887                  6889999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=8.5e-14  Score=78.56  Aligned_cols=45  Identities=24%  Similarity=0.420  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS------------------CSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999887                  6889999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.2e-13  Score=77.82  Aligned_cols=45  Identities=16%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT------------------GERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS------------------CCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999987                  6889999887

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.7e-15  Score=91.27  Aligned_cols=61  Identities=16%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             cccCCCCcccchhhhHHHhcCCCCCCccccccc-C-CCCCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181            6 QESSELDHSLNMANCLMFLSHGRGFNAVNGVNT-M-AAGRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus         6 ~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~-H-~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      +.|++ +++|.|..|++.|.+...|.  .|+++ | +++++|.|++|++.|...+.|..|+++|.+
T Consensus         3 ~~h~~-~k~~~C~~C~k~f~~~~~l~--~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEG-EHTYRCKVCSRVYTHISNFC--RHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEE-TTEEECTTTCCEESSHHHHH--HHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCC-CcceECCCCcchhCCHHHHH--HHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            45666 89999999999999999995  89988 8 699999999999999999999999998864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=4.8e-14  Score=85.90  Aligned_cols=60  Identities=22%  Similarity=0.501  Sum_probs=53.9

Q ss_pred             CCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCC-cccccCCCchHHHHHHhhhccCC
Q 044181           39 MAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECS-VCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        39 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~-~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ..+++||.|.+|++.|. .+.|..|+++ +                  +++||.|+ +||+.|...+.|..|+++|....
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~------------------~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-C------------------PRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-C------------------SSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-c------------------CCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            56789999999999999 9999999987 5                  68999999 99999999999999999987765


Q ss_pred             C
Q 044181          118 L  118 (178)
Q Consensus       118 ~  118 (178)
                      +
T Consensus        65 ~   65 (66)
T 2eod_A           65 L   65 (66)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.44  E-value=1e-13  Score=78.17  Aligned_cols=45  Identities=20%  Similarity=0.271  Sum_probs=41.7

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT------------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS------------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999887                  6889999877

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.44  E-value=9.2e-14  Score=78.37  Aligned_cols=45  Identities=18%  Similarity=0.347  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGG------------------CCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999887                  6889999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1e-13  Score=78.17  Aligned_cols=45  Identities=20%  Similarity=0.339  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT------------------TSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999987                  6889999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.3e-13  Score=77.86  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM------------------GEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG------------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1e-13  Score=78.17  Aligned_cols=45  Identities=18%  Similarity=0.328  Sum_probs=42.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS------------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                  6889999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=9.8e-14  Score=78.25  Aligned_cols=45  Identities=18%  Similarity=0.333  Sum_probs=41.7

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC------------------CCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.2e-13  Score=77.80  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=41.6

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT------------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT------------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999887                  6889999877

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=8.3e-14  Score=78.55  Aligned_cols=45  Identities=20%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHH------------------CSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                  6889999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=9.8e-14  Score=78.20  Aligned_cols=45  Identities=18%  Similarity=0.350  Sum_probs=41.7

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT------------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS------------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=77.33  Aligned_cols=44  Identities=25%  Similarity=0.411  Sum_probs=41.0

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      |+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA------------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT------------------SSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            6889999999999999999999999999999987                  6889999877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.1e-13  Score=78.08  Aligned_cols=45  Identities=18%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC------------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999887                  6889999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.4e-13  Score=77.66  Aligned_cols=45  Identities=18%  Similarity=0.367  Sum_probs=42.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT------------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT------------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                  6889999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=9.6e-14  Score=78.30  Aligned_cols=45  Identities=18%  Similarity=0.377  Sum_probs=42.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH------------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999987                  6889999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=8.9e-14  Score=78.43  Aligned_cols=45  Identities=20%  Similarity=0.398  Sum_probs=41.4

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS------------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999887                  6889999877

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.2e-13  Score=77.82  Aligned_cols=45  Identities=18%  Similarity=0.370  Sum_probs=41.6

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT------------------TCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.7e-13  Score=77.33  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=41.7

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC------------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.43  E-value=1.3e-13  Score=77.83  Aligned_cols=45  Identities=22%  Similarity=0.345  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS------------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999987                  6889999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.5e-13  Score=77.49  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT------------------TCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.4e-13  Score=77.58  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|....+|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT------------------TCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.4e-13  Score=77.55  Aligned_cols=45  Identities=18%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV------------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC------------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999987                  6889999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=77.15  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC------------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999987                  6889999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.4e-13  Score=77.60  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM------------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC------------------CSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999887                  6889999877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.42  E-value=1.5e-13  Score=77.39  Aligned_cols=45  Identities=20%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT------------------SCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.6e-13  Score=77.40  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=41.3

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT------------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999887                  6889999875

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.2e-13  Score=77.89  Aligned_cols=45  Identities=18%  Similarity=0.384  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS------------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            68899999999999999999999999999999987                  6889999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=9.7e-14  Score=78.27  Aligned_cols=45  Identities=20%  Similarity=0.370  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      +|+++|++++||.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT------------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH------------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999987                  5889999887

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.42  E-value=1e-13  Score=89.04  Aligned_cols=63  Identities=25%  Similarity=0.463  Sum_probs=56.2

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      ++||.|.+|++.|.....|..|+++|.                  +++||.|++||+.|.+...|..|+++|.+ .++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c   61 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT------------------GEKPFACDICGRKFARSDERKRHRDIQHI-LPILE   61 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH------------------CCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC------------------CCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchH
Confidence            589999999999999999999999987                  68899999999999999999999999885 44544


Q ss_pred             CC
Q 044181          122 EK  123 (178)
Q Consensus       122 ~~  123 (178)
                      ..
T Consensus        62 ~~   63 (88)
T 1llm_C           62 DK   63 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.42  E-value=1.9e-13  Score=77.05  Aligned_cols=45  Identities=20%  Similarity=0.306  Sum_probs=41.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|....+|..|+++|+                  +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT------------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC------------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=1.2e-13  Score=77.92  Aligned_cols=45  Identities=18%  Similarity=0.321  Sum_probs=40.5

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS------------------SCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999988887                  6888999877

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.2e-13  Score=76.79  Aligned_cols=45  Identities=18%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM------------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS------------------CCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999987                  6889999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=9.6e-15  Score=87.09  Aligned_cols=56  Identities=18%  Similarity=0.321  Sum_probs=51.6

Q ss_pred             cccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHH-HhcCCC
Q 044181           13 HSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHR-ASHKKP   70 (178)
Q Consensus        13 ~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~   70 (178)
                      ++|.|..|++.|.+...|.  .|+++|+++++|.|.+|++.|.....|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLK--RHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHH--HHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHH--HHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            5899999999999999995  8999999999999999999999999999996 678653

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.5e-13  Score=77.46  Aligned_cols=45  Identities=16%  Similarity=0.314  Sum_probs=41.6

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT------------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC------------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999887                  6889999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.8e-13  Score=77.28  Aligned_cols=45  Identities=13%  Similarity=0.290  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT------------------GQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH------------------SCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999987                  5889999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.40  E-value=3.2e-13  Score=78.93  Aligned_cols=49  Identities=24%  Similarity=0.562  Sum_probs=44.5

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHH-hcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCc
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRA-SHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIG  103 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~  103 (178)
                      ..|++++||.|.+|++.|.....|..|++ +|+                  +++||.|.+|++.|++.
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~------------------~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT------------------SERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC------------------CCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC------------------CCCCccCCCCCCCCCCC
Confidence            57899999999999999999999999987 776                  68999999999999863

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.4e-13  Score=76.24  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=41.6

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHH-hcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRA-SHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|++++||.|.+|++.|...+.|..|++ +|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~------------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT------------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT------------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999998 886                  6889999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.8e-13  Score=76.41  Aligned_cols=45  Identities=16%  Similarity=0.267  Sum_probs=41.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|++|++.|...++|..|+++|+                  +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT------------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH------------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc------------------CCCCCCCCCC
Confidence            57899999999999999999999999999999997                  5889999887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.5e-13  Score=75.51  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=41.5

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC------------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            58899999999999999999999999999999987                  6889999865

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=7.8e-15  Score=92.18  Aligned_cols=60  Identities=23%  Similarity=0.367  Sum_probs=53.8

Q ss_pred             cCCCCcccchhhhHHHhcCCCCCCcccccccCCC---CCceecCcCCCcCCChHHHHHHHH-hcCCC
Q 044181            8 SSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAA---GRAFECKTCNRQFPSFQALGGHRA-SHKKP   70 (178)
Q Consensus         8 ~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~---~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~   70 (178)
                      |++ +++|.|.+|++.|.+...|.  .|+++|++   +++|.|.+|++.|.....|..|++ .|.++
T Consensus         2 h~~-~k~~~C~~C~k~f~~~~~L~--~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            2 SSG-SSGLQCEICGFTCRQKASLN--WHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCS-CCCEECSSSCCEESSHHHHH--HHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCC-CcCeECCCCCCeeCCHHHHH--HHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            666 89999999999999999995  99999996   899999999999999999999995 55543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.5e-13  Score=75.46  Aligned_cols=45  Identities=22%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             ccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           33 VNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        33 ~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      +.|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~~~~~C~~   45 (46)
T 2em3_A            1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC------------------CCCCCCSCC
T ss_pred             CCCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            368999999999999999999999999999999987                  578888864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.37  E-value=5.1e-13  Score=82.44  Aligned_cols=61  Identities=26%  Similarity=0.439  Sum_probs=55.1

Q ss_pred             ccccCCCCCceecCc--CCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc--ccccCCCchHHHHHH
Q 044181           35 GVNTMAAGRAFECKT--CNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV--CGLEFAIGQALGGHM  110 (178)
Q Consensus        35 h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~  110 (178)
                      ....++..++|.|..  |++.|.....|..|+++|+                  +++||.|.+  |++.|.+...|..|+
T Consensus         8 ~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A            8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT------------------GEKPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHS------------------SSCSEECCCTTCCCEESSHHHHHHHT
T ss_pred             CCCCccccCceeCCCCCCccccCCHHHHHHHHHhcC------------------CCCCccCCCCCCCcccCCHHHHHhHh
Confidence            445678899999998  9999999999999999987                  689999965  999999999999999


Q ss_pred             hhh
Q 044181          111 RRH  113 (178)
Q Consensus       111 ~~H  113 (178)
                      ++|
T Consensus        70 ~~H   72 (72)
T 2epa_A           70 RTH   72 (72)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            876

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=7.2e-13  Score=74.66  Aligned_cols=44  Identities=23%  Similarity=0.359  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            68899999999999999999999999999999999999999965

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7.4e-13  Score=74.56  Aligned_cols=44  Identities=20%  Similarity=0.260  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999965

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=8.6e-13  Score=74.29  Aligned_cols=44  Identities=23%  Similarity=0.345  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7.8e-13  Score=74.45  Aligned_cols=44  Identities=20%  Similarity=0.376  Sum_probs=40.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|++|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT------------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC------------------CCCCCCCCC
Confidence            58999999999999999999999999999999887                  678888864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=8.2e-13  Score=74.43  Aligned_cols=44  Identities=20%  Similarity=0.422  Sum_probs=40.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      +|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT------------------TCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC------------------CCCCCCCCC
Confidence            68999999999999999999999999999999887                  578888864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7e-13  Score=74.71  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=40.3

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      +|+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS------------------CCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            68999999999999999999999999999999887                  688898864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.36  E-value=1.2e-13  Score=83.29  Aligned_cols=54  Identities=17%  Similarity=0.333  Sum_probs=45.9

Q ss_pred             ccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHH
Q 044181           33 VNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALG  107 (178)
Q Consensus        33 ~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~  107 (178)
                      ..|+++|++++||.|++||+.|.....|.   ++|+                  +++||.|++||+.|....++.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~------------------~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDP------------------MTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEET------------------TTTEEBCSSSCCBCEECTTCS
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcC------------------CCCCEECCCCCCccccCcccc
Confidence            37899999999999999999999888775   6665                  689999999999998776543

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=8.1e-13  Score=74.38  Aligned_cols=44  Identities=20%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999875

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.35  E-value=7.6e-13  Score=74.55  Aligned_cols=44  Identities=23%  Similarity=0.401  Sum_probs=40.4

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT------------------TSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999987                  578888864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=7.4e-13  Score=74.61  Aligned_cols=44  Identities=27%  Similarity=0.418  Sum_probs=40.5

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS------------------SSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC------------------CCCCCCCCC
Confidence            58999999999999999999999999999999997                  578888864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=73.94  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence            58899999999999999999999999999999999999999864

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9.9e-13  Score=74.03  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5.7e-13  Score=75.03  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            68899999999999999999999999999999999999999875

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=8.1e-13  Score=74.39  Aligned_cols=44  Identities=20%  Similarity=0.225  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999964

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=8.6e-13  Score=74.29  Aligned_cols=44  Identities=20%  Similarity=0.459  Sum_probs=40.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC------------------CCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999887                  578888864

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=2e-14  Score=89.04  Aligned_cols=59  Identities=17%  Similarity=0.359  Sum_probs=53.5

Q ss_pred             ccCCCCcccchh--hhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181            7 ESSELDHSLNMA--NCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus         7 ~~~~~~~~~~C~--~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .|++ +++|.|.  .|++.|.....|.  .|+++|+++++|.|.+|++.|...+.|..|+++|+
T Consensus        13 ~~~~-~~~~~C~~~~C~k~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPK-MRPYACPVESCDRRFSRSDELT--RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCC-CCCEECSSTTBCCEESSHHHHH--HHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCC-CCccCCcCCCCCCccCCHHHHH--HHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3444 8999997  6999999999995  89999999999999999999999999999999884

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.1e-12  Score=73.81  Aligned_cols=44  Identities=27%  Similarity=0.334  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=8.6e-13  Score=74.29  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.35  E-value=7.1e-13  Score=84.84  Aligned_cols=70  Identities=23%  Similarity=0.422  Sum_probs=62.6

Q ss_pred             CCCceecCc--CCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCC--cccccCCCchHHHHHHhhhccC
Q 044181           41 AGRAFECKT--CNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECS--VCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        41 ~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ..++|.|..  |++.|.....|..|+++|.                  ++++|.|+  .|++.|.+...|..|+++|.++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   63 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHT------------------GEKPYHCDWDGCGWKFARSDELTRHYRKHTGH   63 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTTSC------------------SSCCEECCSTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHhcC------------------CCCCcCCCCCCCCCccCCHHHHHHHHHHcCCC
Confidence            357899999  9999999999999999886                  68899997  5999999999999999999999


Q ss_pred             CCCCCCCcccCc
Q 044181          117 GLHGNEKLSDLS  128 (178)
Q Consensus       117 ~~~~~~~~~~~~  128 (178)
                      ++|.|.......
T Consensus        64 ~~~~C~~C~~~f   75 (89)
T 2wbs_A           64 RPFQCQKCDRAF   75 (89)
T ss_dssp             CCEECSSSSCEE
T ss_pred             CCccCCCCCccc
Confidence            999998876543

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=8.4e-13  Score=74.27  Aligned_cols=44  Identities=20%  Similarity=0.415  Sum_probs=40.4

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC------------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC------------------CCCCCCCCC
Confidence            58999999999999999999999999999999987                  578888864

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=6.4e-13  Score=74.87  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             ccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           79 VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        79 ~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      +.|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            368899999999999999999999999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.35  E-value=1e-12  Score=74.04  Aligned_cols=44  Identities=25%  Similarity=0.320  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.35  E-value=6.4e-13  Score=74.86  Aligned_cols=44  Identities=27%  Similarity=0.440  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999865

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9.4e-13  Score=72.56  Aligned_cols=42  Identities=17%  Similarity=0.164  Sum_probs=39.6

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      |+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678899999999999999999999999999999999999873

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.1e-12  Score=73.84  Aligned_cols=44  Identities=18%  Similarity=0.330  Sum_probs=40.4

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT------------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS------------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            68999999999999999999999999999999887                  578898864

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9.7e-13  Score=74.01  Aligned_cols=44  Identities=23%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9.4e-13  Score=74.07  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC------------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999887                  678888864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1e-12  Score=74.05  Aligned_cols=44  Identities=18%  Similarity=0.385  Sum_probs=40.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS------------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC------------------CCCCCCCCC
Confidence            58999999999999999999999999999999887                  688898864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.3e-12  Score=72.00  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=32.5

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |+++|++++||.|.+|++.|...+.|..|+++|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT   34 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC
Confidence            6789999999999999999999999999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9.1e-13  Score=74.13  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=40.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS------------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC------------------CCCCcCCCC
Confidence            58999999999999999999999999999999887                  678888864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9.2e-13  Score=74.15  Aligned_cols=44  Identities=20%  Similarity=0.404  Sum_probs=40.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS------------------CSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999887                  678888864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=74.05  Aligned_cols=44  Identities=23%  Similarity=0.240  Sum_probs=41.4

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++|++.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.34  E-value=6.3e-13  Score=73.33  Aligned_cols=42  Identities=24%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      |+++|+++++|.|++||+.|.+.+.|..|+++|.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            678899999999999999999999999999999999999874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=73.80  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999965

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=7.2e-13  Score=74.61  Aligned_cols=44  Identities=23%  Similarity=0.344  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|.+||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            68899999999999999999999999999999999999999864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.34  E-value=1e-12  Score=72.46  Aligned_cols=34  Identities=24%  Similarity=0.561  Sum_probs=32.4

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |+++|+++++|.|.+|++.|...++|..|+++|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA   34 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC
Confidence            6789999999999999999999999999999887

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=73.95  Aligned_cols=44  Identities=23%  Similarity=0.414  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.34  E-value=2e-12  Score=84.47  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=64.4

Q ss_pred             CCCCceecCc--CCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCC--cccccCCCchHHHHHHhhhcc
Q 044181           40 AAGRAFECKT--CNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECS--VCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        40 ~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      ..+++|.|..  |++.|.....|..|+++|.                  ++++|.|.  .|++.|.+...|..|+++|.+
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   72 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT------------------GEKPYKCTWEGCDWRFARSDELTRHYRKHTG   72 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHS------------------CCCCEECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhC------------------CCCCeeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence            4567999997  9999999999999999987                  58899996  699999999999999999999


Q ss_pred             CCCCCCCCcccCcC
Q 044181          116 AGLHGNEKLSDLSG  129 (178)
Q Consensus       116 ~~~~~~~~~~~~~~  129 (178)
                      +++|.|........
T Consensus        73 ~~~~~C~~C~~~f~   86 (100)
T 2ebt_A           73 AKPFQCGVCNRSFS   86 (100)
T ss_dssp             CCSCBCSSSCCBCS
T ss_pred             CCCeECCCCcCccC
Confidence            99999998765443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.2e-12  Score=73.75  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=40.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT------------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS------------------CCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999887                  678898864

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=73.73  Aligned_cols=44  Identities=27%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.34  E-value=1.3e-12  Score=73.64  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            48899999999999999999999999999999999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=8e-13  Score=74.47  Aligned_cols=44  Identities=23%  Similarity=0.319  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|.+||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=73.86  Aligned_cols=44  Identities=27%  Similarity=0.429  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=73.79  Aligned_cols=44  Identities=23%  Similarity=0.390  Sum_probs=40.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC------------------SCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC------------------CCCCCCCCC
Confidence            58999999999999999999999999999999887                  578888864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=73.15  Aligned_cols=43  Identities=21%  Similarity=0.190  Sum_probs=40.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999999874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.6e-12  Score=73.19  Aligned_cols=44  Identities=20%  Similarity=0.443  Sum_probs=40.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT------------------GERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS------------------SCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999987                  578888863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=73.77  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.4e-12  Score=73.33  Aligned_cols=44  Identities=23%  Similarity=0.298  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.5e-12  Score=73.34  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=41.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=6.8e-13  Score=74.75  Aligned_cols=44  Identities=27%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|.+||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=8e-13  Score=74.42  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999865

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.2e-12  Score=73.73  Aligned_cols=44  Identities=18%  Similarity=0.400  Sum_probs=40.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC------------------CSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999887                  678888864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.3e-12  Score=73.51  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=40.4

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT------------------SSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999997                  578888864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=7.5e-13  Score=74.54  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999865

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.33  E-value=8.5e-13  Score=74.25  Aligned_cols=44  Identities=23%  Similarity=0.287  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=8.4e-13  Score=74.33  Aligned_cols=44  Identities=20%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999865

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=8.9e-13  Score=74.23  Aligned_cols=44  Identities=27%  Similarity=0.379  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.4e-13  Score=74.06  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999964

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=73.68  Aligned_cols=44  Identities=18%  Similarity=0.350  Sum_probs=40.1

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|....+|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS------------------SCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999887                  678898864

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.33  E-value=8.8e-13  Score=74.24  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=73.97  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=41.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999964

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=73.69  Aligned_cols=43  Identities=19%  Similarity=0.384  Sum_probs=40.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECS   94 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~   94 (178)
                      +|+++|++++||.|.+|++.|...+.|..|+++|+                  +++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT------------------GERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT------------------CCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC------------------CCCCCCCC
Confidence            58999999999999999999999999999999987                  57888886

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.3e-12  Score=72.81  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=33.4

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .|+++|++++||.|.+|++.|...++|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA   36 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcC
Confidence            68999999999999999999999999999999887

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.2e-13  Score=72.59  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=39.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478899999999999999999999999999999999999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=8.9e-13  Score=74.27  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.3e-12  Score=73.43  Aligned_cols=44  Identities=23%  Similarity=0.347  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=9.5e-13  Score=73.39  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=40.7

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      |+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6788999999999999999999999999999999999999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.3e-13  Score=74.09  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999865

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=73.70  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1e-12  Score=73.96  Aligned_cols=44  Identities=32%  Similarity=0.422  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1e-12  Score=73.97  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.6e-12  Score=73.19  Aligned_cols=44  Identities=27%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999865

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1e-12  Score=74.01  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=73.85  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+.+.|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999865

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=7.9e-13  Score=74.49  Aligned_cols=44  Identities=27%  Similarity=0.486  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.4e-12  Score=72.64  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=33.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT   36 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC
Confidence            58899999999999999999999999999999887

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-12  Score=72.58  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=33.6

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      +|+++|++++||.|.+|++.|....+|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA   36 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC
Confidence            68999999999999999999999999999999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=72.34  Aligned_cols=35  Identities=20%  Similarity=0.493  Sum_probs=33.5

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT   36 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC
Confidence            58899999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=73.85  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1e-12  Score=73.94  Aligned_cols=44  Identities=23%  Similarity=0.295  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            58899999999999999999999999999999999999999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=73.73  Aligned_cols=44  Identities=18%  Similarity=0.343  Sum_probs=40.4

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|+                  +++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHH------------------SCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcC------------------CCCCCCCCC
Confidence            58899999999999999999999999999999997                  578888864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.4e-12  Score=73.50  Aligned_cols=44  Identities=16%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|++++||.|.+|++.|.....|..|+++|+                  +++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS------------------GERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT------------------SCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC------------------CCCCCCCCC
Confidence            57899999999999999999999999999998887                  688898864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1e-12  Score=73.91  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|.+||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999965

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1e-12  Score=73.99  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.5e-12  Score=73.28  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence            48889999999999999999999999999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=73.07  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=40.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999999874

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.2e-12  Score=73.59  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=42.1

Q ss_pred             ccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           79 VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        79 ~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      ..|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A            1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            368899999999999999999999999999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.8e-12  Score=72.99  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=41.4

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|.+|++.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999864

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.2e-12  Score=73.55  Aligned_cols=44  Identities=23%  Similarity=0.297  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=73.96  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=73.64  Aligned_cols=44  Identities=20%  Similarity=0.403  Sum_probs=40.0

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCC-CCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIK-PKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~-~k~~~C~~   95 (178)
                      .|+++|++++||.|.+|++.|...++|..|+++|+                  + ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT------------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC------------------SCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            58999999999999999999999999999999887                  6 78888864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2e-12  Score=72.88  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=73.11  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=40.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .++++|+++++|.|.+|++.|....+|..|+++|+                  +++||.|++|
T Consensus         2 s~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2ep0_A            2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS------------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            35789999999999999999999999999999887                  6889999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=73.84  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=41.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            68899999999999999999999999999999999999999864

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=6.7e-14  Score=90.95  Aligned_cols=63  Identities=21%  Similarity=0.180  Sum_probs=56.7

Q ss_pred             CcccchhhhHHHhcCCCCCCccccccc-CCCCCc--------eecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCcccc
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNT-MAAGRA--------FECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQ   82 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~   82 (178)
                      .-.|.|..|++.|.+...|.  .|+++ |+++++        |.|.+|++.|.....|..|+++|+              
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~--~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~--------------   86 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELV--THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT--------------   86 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHH--HHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH--------------
T ss_pred             cCCCcccccccccCCHHHHH--HHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC--------------
Confidence            34578999999999999995  89997 999988        999999999999999999999997              


Q ss_pred             ccCCCCCCCcCC
Q 044181           83 QLPIKPKTHECS   94 (178)
Q Consensus        83 ~~h~~~k~~~C~   94 (178)
                          +++||.|+
T Consensus        87 ----~~k~~~C~   94 (95)
T 2ej4_A           87 ----GEKSGPSS   94 (95)
T ss_dssp             ----TCCCCSSC
T ss_pred             ----CCCCCCCC
Confidence                57888886

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=73.86  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999865

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1e-12  Score=73.16  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=40.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999999999999999999999999874

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.4e-12  Score=73.43  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999865

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.31  E-value=2.5e-14  Score=98.29  Aligned_cols=62  Identities=18%  Similarity=0.283  Sum_probs=55.8

Q ss_pred             ccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181            3 RAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus         3 r~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +|. .|++ +++|.|.+||+.|.+...|.  .|+++|  ++||.|++|++.|...++|..|+++|++.
T Consensus        65 ~h~-~h~~-~~~~~C~~C~k~f~~~~~l~--~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           65 RLL-ASKA-ISQFVCPLCLMPFSSSVSLK--QHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHH-HHHH-HCSEECTTTCCEESSHHHHH--HHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHH-HhCC-CCCeECCCCCcccCCHhHHH--HHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            444 5666 89999999999999999995  999999  89999999999999999999999999864

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.5e-12  Score=73.28  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=72.93  Aligned_cols=43  Identities=19%  Similarity=0.195  Sum_probs=40.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999999873

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.2e-12  Score=73.74  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            68889999999999999999999999999999999999999864

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.2e-12  Score=73.75  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=72.81  Aligned_cols=43  Identities=23%  Similarity=0.274  Sum_probs=40.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5889999999999999999999999999999999999999874

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.5e-12  Score=73.32  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999865

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.4e-12  Score=73.46  Aligned_cols=43  Identities=16%  Similarity=0.320  Sum_probs=39.7

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECS   94 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~   94 (178)
                      +|+++|++++||.|++|++.|...+.|..|+++|+                  +++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT------------------QETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS------------------SCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhC------------------CCCCCCCC
Confidence            68999999999999999999999999999999987                  57888886

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.3e-12  Score=72.01  Aligned_cols=35  Identities=17%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      +|+++|++++||.|++|++.|...++|..|+++|+
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT   35 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhC
Confidence            47899999999999999999999999999998887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.31  E-value=1.5e-12  Score=73.17  Aligned_cols=44  Identities=23%  Similarity=0.312  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=72.25  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=39.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            378899999999999999999999999999999999999876

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.5e-12  Score=72.53  Aligned_cols=35  Identities=20%  Similarity=0.464  Sum_probs=33.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS   36 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC
Confidence            58899999999999999999999999999999887

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.4e-12  Score=73.32  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|.+||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.6e-12  Score=71.72  Aligned_cols=41  Identities=27%  Similarity=0.427  Sum_probs=38.9

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      |+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            77889999999999999999999999999999999999876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=73.25  Aligned_cols=44  Identities=27%  Similarity=0.364  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.5e-12  Score=72.41  Aligned_cols=44  Identities=20%  Similarity=0.425  Sum_probs=39.7

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+                  +++||.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC------------------CSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            57899999999999999999999999999999887                  578888863

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.3e-12  Score=73.46  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=73.21  Aligned_cols=44  Identities=25%  Similarity=0.459  Sum_probs=40.2

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|++++||.|.+|++.|...++|..|+++|+                  +++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS------------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH------------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            58999999999999999999999999999999997                  578888863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.8e-12  Score=72.92  Aligned_cols=43  Identities=23%  Similarity=0.428  Sum_probs=41.0

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|++++||.|.+||+.|.+...|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.7e-12  Score=73.00  Aligned_cols=44  Identities=23%  Similarity=0.362  Sum_probs=41.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=73.19  Aligned_cols=35  Identities=17%  Similarity=0.494  Sum_probs=32.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT   36 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC
Confidence            68899999999999999999999999999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=72.58  Aligned_cols=44  Identities=20%  Similarity=0.184  Sum_probs=41.4

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS   45 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-12  Score=73.15  Aligned_cols=44  Identities=23%  Similarity=0.346  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2e-12  Score=72.66  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=39.8

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .|+++|+++++|.|++|++.|...+.|..|+++|+                  +++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT------------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC------------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC------------------CCCCCCCCC
Confidence            58999999999999999999999999999999887                  578888863

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.1e-12  Score=71.27  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=40.3

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            4788899999999999999999999999999999999999874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=72.58  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=41.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999864

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.4e-12  Score=72.42  Aligned_cols=44  Identities=23%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSS   45 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.29  E-value=3.1e-12  Score=70.39  Aligned_cols=35  Identities=17%  Similarity=0.406  Sum_probs=33.0

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |+++|++++||.|++|++.|...++|..|+++|++
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ   36 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCC
Confidence            78899999999999999999999999999999873

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.29  E-value=1.9e-12  Score=71.34  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      |+++|++++||.|++||+.|.+.+.|..|+++|.++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67889999999999999999999999999999999999876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=72.70  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=40.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6889999999999999999999999999999999999999873

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.28  E-value=2.7e-12  Score=71.88  Aligned_cols=43  Identities=16%  Similarity=0.354  Sum_probs=39.8

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCccc
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCG   97 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cg   97 (178)
                      .+|++++||.|.+|++.|...+.|..|+++|+                  ++++|.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~------------------~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD------------------GSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS------------------CCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc------------------CCCCCCCcCCC
Confidence            47899999999999999999999999999987                  68899999986

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.7e-12  Score=71.83  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=41.5

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHh-hhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMR-RHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|++ +|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            58899999999999999999999999999999 999999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.28  E-value=2e-12  Score=81.84  Aligned_cols=59  Identities=25%  Similarity=0.514  Sum_probs=54.4

Q ss_pred             ceec--CcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc--ccccCCCchHHHHHHhhhccCCCC
Q 044181           44 AFEC--KTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV--CGLEFAIGQALGGHMRRHRAAGLH  119 (178)
Q Consensus        44 ~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~  119 (178)
                      ||.|  +.|++.|.....|..|+++|.                  ++++|.|++  |++.|.+...|..|+++|.+   +
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~   59 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT------------------QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---Y   59 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH------------------TTCCEECCSTTCCCEESSHHHHHHHHHHHHS---E
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC------------------CCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---C
Confidence            6999  999999999999999999987                  588999988  99999999999999999998   6


Q ss_pred             CCCC
Q 044181          120 GNEK  123 (178)
Q Consensus       120 ~~~~  123 (178)
                      .|..
T Consensus        60 ~C~~   63 (85)
T 2j7j_A           60 PCKK   63 (85)
T ss_dssp             ECCS
T ss_pred             CCCC
Confidence            6655

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2e-12  Score=71.28  Aligned_cols=36  Identities=19%  Similarity=0.481  Sum_probs=33.5

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      .|+++|++++||.|++|++.|...+.|..|+++|++
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG   36 (42)
T ss_dssp             CCCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHS
T ss_pred             CCCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCC
Confidence            378999999999999999999999999999999873

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.8e-12  Score=72.94  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=40.5

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .+++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT------------------REKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH------------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC------------------CCCCCCCCCC
Confidence            5689999999999999999999999999999987                  5889999887

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=2.6e-12  Score=70.83  Aligned_cols=34  Identities=21%  Similarity=0.540  Sum_probs=32.3

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |+++|++++||.|++|++.|...+.|..|+++|+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT   35 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC
Confidence            7889999999999999999999999999999887

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=2e-12  Score=72.80  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=40.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhcc-CCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRA-AGLHGNE  122 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~-~~~~~~~  122 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.+ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            588999999999999999999999999999999999 9999885

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.7e-12  Score=73.00  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++++|.|..
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3e-12  Score=71.38  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=39.8

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      .|+++|++++||.|.+||+.|.+.+.|..|+++|.++++|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            588999999999999999999999999999999999998876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.8e-12  Score=72.19  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|+++|+++++|.|++||+.|.+...|..|+++|.++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            47889999999999999999999999999999999999999864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2e-12  Score=72.70  Aligned_cols=43  Identities=23%  Similarity=0.359  Sum_probs=39.6

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECS   94 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~   94 (178)
                      .|+++|++++||.|.+|++.|.....|..|+++|+                  +++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE------------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH------------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC------------------CCCCCCCC
Confidence            68999999999999999999999999999999987                  57888885

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=5.6e-12  Score=70.23  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .|+++|+++++|.|.+|++.|...++|..|+++|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA   36 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC
Confidence            47899999999999999999999999999999997

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=6.4e-12  Score=70.69  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=40.1

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .+++|+++++|.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999964

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.26  E-value=5.7e-14  Score=84.68  Aligned_cols=55  Identities=11%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHH
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALG   61 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~   61 (178)
                      |++|.+.|++ +++|.|..||+.|.....|   .  ++|++++||.|.+||+.|....++.
T Consensus         2 L~~h~~~H~~-~k~~~C~~C~k~F~~~~~l---~--~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTN-RASFKCPVCSSTFTDLEAN---Q--LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCS-SSEEECSSSCCEEEHHHHH---H--HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCC-CCCccCCCCCchhccHHHh---H--hhcCCCCCEECCCCCCccccCcccc
Confidence            7899999988 9999999999999987666   2  7899999999999999998776553

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=8.3e-14  Score=84.81  Aligned_cols=56  Identities=11%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             CCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecC-cCCCcCCChHHHHHHHHhcCC
Q 044181           10 ELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECK-TCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        10 ~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~-~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      .++++|.|..|++.|. ...|.  .|+++ ++++||.|+ +|++.|...+.|..|+++|..
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~--~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQ--SHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHH--HHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCCCeeccccCCccC-HHHHH--HHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            4589999999999999 88885  89999 999999999 999999999999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=6.4e-12  Score=70.03  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=33.9

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      .|+++|++++||.|.+|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG   37 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSS
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcC
Confidence            589999999999999999999999999999999873

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=3.7e-12  Score=72.41  Aligned_cols=44  Identities=18%  Similarity=0.329  Sum_probs=39.0

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccc
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGL   98 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk   98 (178)
                      ..|+++++|.|.+|++.|.....|..|+++|+                  +++||.|++|||
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS------------------GEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSC------------------SCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcC------------------CCCCccCCCCCC
Confidence            35788999999999999999999999998886                  688999999986

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.25  E-value=1e-12  Score=76.74  Aligned_cols=51  Identities=12%  Similarity=0.147  Sum_probs=41.8

Q ss_pred             CcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCC
Q 044181           52 RQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHG  120 (178)
Q Consensus        52 k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~  120 (178)
                      +.|.....|..|+++|+                  +++||.|.+||+.|.+.+.|..|+++|++++||.
T Consensus         4 k~~~~~~~l~~h~~~H~------------------~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQ------------------SEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHT------------------SSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcC------------------CCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            45555555555555554                  7999999999999999999999999999999863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=69.74  Aligned_cols=43  Identities=21%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .+++|+++++|.|.+|++.|....+|..|+++|+                  +++||.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT------------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS------------------SCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC------------------CCCCCCCCC
Confidence            5689999999999999999999999999999997                  578888863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=8.1e-12  Score=70.71  Aligned_cols=45  Identities=24%  Similarity=0.387  Sum_probs=40.8

Q ss_pred             cccccCCCCCceecC--cCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcc
Q 044181           34 NGVNTMAAGRAFECK--TCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVC   96 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~C   96 (178)
                      .|.++|+++++|.|.  .|++.|.....|..|+++|+                  +++||.|.+|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS------------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC------------------CCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC------------------CCCCCCCCCC
Confidence            467899999999998  89999999999999999887                  6889999887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.23  E-value=2.7e-12  Score=74.91  Aligned_cols=47  Identities=13%  Similarity=0.130  Sum_probs=42.8

Q ss_pred             HHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           22 MFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        22 ~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +.|.....|.  .|+++|+++++|.|.+|++.|...++|..|+++|+++
T Consensus         4 k~~~~~~~l~--~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   50 (54)
T 1yui_A            4 KRAKHPPGTE--KPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             CCCSCSSCCC--CCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTT
T ss_pred             cccCCCcchh--hHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            5677888886  8999999999999999999999999999999999853

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.9e-12  Score=79.12  Aligned_cols=67  Identities=21%  Similarity=0.314  Sum_probs=59.8

Q ss_pred             CCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHH
Q 044181           28 RGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALG  107 (178)
Q Consensus        28 ~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~  107 (178)
                      ..|.  .|+++|.+++|+.|..|++.|. .+.|..|+ .|.                  +++||.|+.|++.|. ...|.
T Consensus         3 ~~L~--~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c------------------~~~~~~C~~C~~~~~-~~~l~   59 (75)
T 2d9k_A            3 SGSS--GHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC------------------GARTELCGNCGRNVL-VKDLK   59 (75)
T ss_dssp             CCCS--CCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH------------------HHCEEECSSSCCEEE-TTGGG
T ss_pred             hHHH--hhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc------------------CCCceEcccCCCcCc-HHHHH
Confidence            4564  8999999999999999999995 89999998 776                  689999999999987 59999


Q ss_pred             HHHhhhccCC
Q 044181          108 GHMRRHRAAG  117 (178)
Q Consensus       108 ~H~~~H~~~~  117 (178)
                      .|+++|.+++
T Consensus        60 ~H~~~c~~~~   69 (75)
T 2d9k_A           60 THPEVCGREG   69 (75)
T ss_dssp             THHHHBTTBS
T ss_pred             HHHHHccCCc
Confidence            9999999885

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.5e-12  Score=70.60  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=39.8

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      +.++|+++++|.|.+|++.|.+...|..|+++|.++++|.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            5678899999999999999999999999999999999998863

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.2e-11  Score=69.50  Aligned_cols=43  Identities=23%  Similarity=0.267  Sum_probs=40.0

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .+++|+++++|.|++|++.|.+...|..|+++|.++++|.|..
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4578999999999999999999999999999999999999865

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.5e-11  Score=68.12  Aligned_cols=41  Identities=22%  Similarity=0.350  Sum_probs=37.4

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      ++|+++++|.|.+|++.|...++|..|+++|+                  +++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~------------------~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTH------------------SDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT------------------CTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhC------------------CCCCccCCC
Confidence            57999999999999999999999999999997                  578888864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.5e-11  Score=68.14  Aligned_cols=41  Identities=12%  Similarity=0.131  Sum_probs=38.1

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      ++|+++++|.|.+|++.|.+...|..|+++|+++++|.|+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            46889999999999999999999999999999999998863

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-11  Score=69.32  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=38.3

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECS   94 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~   94 (178)
                      .+.++|+++++|.|.+|++.|....+|..|+++|+                  +++||.|+
T Consensus         2 s~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~------------------~~k~~~C~   44 (45)
T 2epu_A            2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT------------------GEKSGPSS   44 (45)
T ss_dssp             CCCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS------------------SCCCCCSC
T ss_pred             CCCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC------------------CCCCCCCC
Confidence            35688999999999999999999999999999887                  57888886

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.2e-11  Score=69.49  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=40.3

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      ++++|+++++|.|++|++.|.+...|..|+++|.++++|.|..
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.18  E-value=5.5e-13  Score=82.31  Aligned_cols=54  Identities=22%  Similarity=0.383  Sum_probs=50.5

Q ss_pred             Ccccchhh--hHHHhcCCCCCCcccccccCCCCCceecCc--CCCcCCChHHHHHHHHhc
Q 044181           12 DHSLNMAN--CLMFLSHGRGFNAVNGVNTMAAGRAFECKT--CNRQFPSFQALGGHRASH   67 (178)
Q Consensus        12 ~~~~~C~~--C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h   67 (178)
                      .++|.|..  |++.|.+...|.  .|+++|+++++|.|.+  |++.|.....|..|+++|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~--~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLK--AHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHH--HHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCceeCCCCCCccccCCHHHHH--HHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            89999988  999999999995  9999999999999965  999999999999999876

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=67.41  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=36.7

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      ++|++++||.|++||+.|.+...|..|+++|.+++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            468899999999999999999999999999999999876

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.2e-11  Score=65.96  Aligned_cols=32  Identities=25%  Similarity=0.541  Sum_probs=30.2

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      ++|++++||.|++|++.|...++|..|+++|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT   34 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC
Confidence            57999999999999999999999999999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=1.1e-12  Score=76.60  Aligned_cols=48  Identities=15%  Similarity=0.162  Sum_probs=43.0

Q ss_pred             cccCCCCcccchhhhHHHhcCCCCCCcccccc-cCCCCCceecCcCCCcCCC
Q 044181            6 QESSELDHSLNMANCLMFLSHGRGFNAVNGVN-TMAAGRAFECKTCNRQFPS   56 (178)
Q Consensus         6 ~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~-~H~~~k~~~C~~C~k~f~~   56 (178)
                      ..|++ +++|.|.+|++.|.+...|.  .|++ +|++++||.|.+|++.|.+
T Consensus         5 ~~~~~-~k~~~C~~C~k~f~~~~~L~--~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSV-GKPYICQSCGKGFSRPDHLN--GHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCS-SCCEECSSSCCEESSHHHHH--HHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCC-CCCeECCCCCcccCCHHHHH--HHHHHhcCCCCCccCCCCCCCCCC
Confidence            34555 89999999999999999995  8987 9999999999999999975

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.13  E-value=4.5e-11  Score=63.74  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .|+++|++++||.|++||+.|.+...|..|+++|.++
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            3788899999999999999999999999999999874

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.3e-11  Score=64.28  Aligned_cols=37  Identities=14%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             cccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           82 QQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        82 ~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      +++|++++||.|.+||+.|.+.+.|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4578899999999999999999999999999999874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=5.4e-11  Score=66.43  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=38.9

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCCc
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKL  124 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~  124 (178)
                      ..|++++||.|.+|++.|.+...|..|+++|.++++|.|...
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            468899999999999999999999999999999999998754

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.10  E-value=7.4e-11  Score=62.87  Aligned_cols=36  Identities=25%  Similarity=0.477  Sum_probs=33.9

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |+++|++++||.|++|++.|...+.|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            789999999999999999999999999999999753

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=8.7e-11  Score=66.33  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=40.4

Q ss_pred             cccccCCCCCCCcCC--cccccCCCchHHHHHHhhhccCCCCCCCC
Q 044181           80 DMQQLPIKPKTHECS--VCGLEFAIGQALGGHMRRHRAAGLHGNEK  123 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~  123 (178)
                      .|.++|+++++|.|.  .|++.|.+...|..|+++|.++++|.|..
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            356789999999998  89999999999999999999999999864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=2.2e-10  Score=69.72  Aligned_cols=42  Identities=19%  Similarity=0.129  Sum_probs=37.1

Q ss_pred             cCCCCCCCcCCc--ccccCCCchHHHHHH-hhhccCCCCCCCCcc
Q 044181           84 LPIKPKTHECSV--CGLEFAIGQALGGHM-RRHRAAGLHGNEKLS  125 (178)
Q Consensus        84 ~h~~~k~~~C~~--Cgk~F~~~~~L~~H~-~~H~~~~~~~~~~~~  125 (178)
                      .++|+|||+|..  ||+.|.+.++|..|+ ++|++++|+.|....
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~   65 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVE   65 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccccc
Confidence            367999999975  999999999999997 699999999986643

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=62.22  Aligned_cols=36  Identities=17%  Similarity=0.469  Sum_probs=33.1

Q ss_pred             cccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCC
Q 044181           36 VNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        36 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      +++|++++||.|.+|++.|...++|..|+++|++++
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999998654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.05  E-value=7.7e-11  Score=63.72  Aligned_cols=37  Identities=41%  Similarity=0.666  Sum_probs=34.1

Q ss_pred             CCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCC
Q 044181           85 PIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGN  121 (178)
Q Consensus        85 h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~  121 (178)
                      |++++||.|++||+.|.+.+.|..|+++|.++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5689999999999999999999999999999998865

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=1.4e-10  Score=74.73  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhh
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      .+.++|++++||.|.+|++.|...++|..|+++|+                  +++||.|..|.    ....|..|.++|
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht------------------~ekp~~C~~~~----~~~~~~~~~~~~   72 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN------------------EEFQKRAKRQE----RRKQLLSKQKYA   72 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH------------------HHHHHHCCCCS----CCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC------------------CCCCcccchhh----hHHHHHhhhccc
Confidence            45678999999999999999999999999999997                  57788886654    344556677777


Q ss_pred             ccC
Q 044181          114 RAA  116 (178)
Q Consensus       114 ~~~  116 (178)
                      .+.
T Consensus        73 ~~~   75 (88)
T 1x6f_A           73 DGA   75 (88)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.03  E-value=1.3e-10  Score=61.02  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      +|++++||.|.+||+.|.+.+.|..|+++|.+++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            46789999999999999999999999999998864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.01  E-value=1.6e-10  Score=60.79  Aligned_cols=35  Identities=14%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      +|++++||.|.+||+.|.+.+.|..|+++|.+++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47799999999999999999999999999998863

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.99  E-value=4.1e-10  Score=58.98  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      +|+++++|.|.+|++.|...++|..|+++|++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            5889999999999999999999999999998654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=2.6e-10  Score=64.57  Aligned_cols=42  Identities=21%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCCcc
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLS  125 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~  125 (178)
                      .|.++++|.|.+|++.|.+...|..|+++|.++++|.|...+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            467899999999999999999999999999999999998753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.97  E-value=4.9e-10  Score=58.82  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      +|++++||.|.+|++.|...+.|..|+++|++++
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            5889999999999999999999999999998654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.97  E-value=5.1e-10  Score=60.38  Aligned_cols=31  Identities=42%  Similarity=0.800  Sum_probs=28.1

Q ss_pred             CCCCCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           39 MAAGRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        39 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |++++||.|.+|++.|...++|..|+++|++
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   31 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRR   31 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCC
Confidence            6789999999999999999999999998874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.6e-10  Score=60.93  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             cccCCCCCCCcCCcccccCCCchHHHHH-HhhhccC
Q 044181           82 QQLPIKPKTHECSVCGLEFAIGQALGGH-MRRHRAA  116 (178)
Q Consensus        82 ~~~h~~~k~~~C~~Cgk~F~~~~~L~~H-~~~H~~~  116 (178)
                      +++|++++||.|++||+.|.+.+.|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4578899999999999999999999999 8999865

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.8e-10  Score=59.82  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             cccCCCCCceecCcCCCcCCChHHHHHH-HHhcCCC
Q 044181           36 VNTMAAGRAFECKTCNRQFPSFQALGGH-RASHKKP   70 (178)
Q Consensus        36 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~   70 (178)
                      +++|++++||+|++|++.|...+.|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4689999999999999999999999999 8999753

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.6e-10  Score=59.73  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             ccCCCCCCCcCCcccccCCCc-hHHHHHHhhhccCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIG-QALGGHMRRHRAAG  117 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~-~~L~~H~~~H~~~~  117 (178)
                      ++|++++||.|++|++.|.+. +.|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            468899999999999999999 99999999998864

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=5.3e-10  Score=59.86  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             CCCCCCCcCC--cccccCCCchHHHHHHhhhccCCCCC
Q 044181           85 PIKPKTHECS--VCGLEFAIGQALGGHMRRHRAAGLHG  120 (178)
Q Consensus        85 h~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~~  120 (178)
                      |++++||.|.  .||+.|.+.+.|..|+++|.++++|+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5789999999  59999999999999999999998764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.9e-10  Score=60.57  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             cCCCCCCCcCCc--ccccCCCchHHHHHHhhhccC
Q 044181           84 LPIKPKTHECSV--CGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        84 ~h~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .+++++||.|++  |++.|.+.+.|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            367899999986  999999999999999999886

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=57.85  Aligned_cols=34  Identities=35%  Similarity=0.530  Sum_probs=31.6

Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .|+++++|.|.+|++.|.+...|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5788999999999999999999999999998874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=7e-10  Score=58.53  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=32.0

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .+|++++||.|.+|++.|.+...|..|+++|.+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            35789999999999999999999999999998864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=6e-10  Score=58.89  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=31.8

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +.|++++||.|.+|++.|.+.+.|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            35789999999999999999999999999998764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.90  E-value=1.1e-09  Score=56.91  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCCCCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAGLHG  120 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~  120 (178)
                      +||.|++||+.|.+.+.|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58999999999999999999999999999874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=58.98  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             cCCCCCceecCc--CCCcCCChHHHHHHHHhcCCC
Q 044181           38 TMAAGRAFECKT--CNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        38 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      .+++++||+|++  |+++|...++|.+|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            578999999986  999999999999999999864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=7.5e-10  Score=58.49  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.9

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ..|++++||.|.+|++.|.+...|..|+++|.+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            35789999999999999999999999999998764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.6e-11  Score=76.75  Aligned_cols=64  Identities=14%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             CcccccccCCCCcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181            1 MKRAFQESSELDHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus         1 lkr~~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |.+|...|.+ +++|.|..|++.|. ...|.  .|+ .|.+++||.|+.|++.|.. ..|..|+++|.++
T Consensus         5 L~~H~~~~c~-~r~~~C~~C~~~~~-~~~L~--~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEETECP-LRLAVCQHCDLELS-ILKLK--EHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCCCCC-CCCEECSSSCCEEC-HHHHH--HHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTB
T ss_pred             HHhhCcccCC-CcccCCcccChHhh-HHHHH--HHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCC
Confidence            6789888955 99999999999994 55664  888 8999999999999999875 8899999999764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.88  E-value=2.2e-09  Score=65.27  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=28.9

Q ss_pred             ccCCCCCceecCc--CCCcCCChHHHHHHH-HhcCC
Q 044181           37 NTMAAGRAFECKT--CNRQFPSFQALGGHR-ASHKK   69 (178)
Q Consensus        37 ~~H~~~k~~~C~~--C~k~f~~~~~L~~H~-~~h~~   69 (178)
                      .-++|+|||+|..  |+++|...++|.+|+ ++|++
T Consensus        20 ~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTg   55 (73)
T 1x3c_A           20 TRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKS   55 (73)
T ss_dssp             SSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred             ccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCC
Confidence            3478999999975  999999999999997 68874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.9e-09  Score=56.91  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=31.6

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      ++|++++||.|.+|++.|...+.|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            4789999999999999999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.4e-09  Score=57.41  Aligned_cols=34  Identities=21%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +.|++++||.|.+|++.|...+.|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            4689999999999999999999999999999864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=9.9e-10  Score=58.39  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=31.6

Q ss_pred             ccCCCCCceecCcCCCcCCCh-HHHHHHHHhcCCC
Q 044181           37 NTMAAGRAFECKTCNRQFPSF-QALGGHRASHKKP   70 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~h~~~   70 (178)
                      ++|++++||.|.+|++.|... +.|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            579999999999999999999 9999999999764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.9e-09  Score=56.77  Aligned_cols=34  Identities=18%  Similarity=0.385  Sum_probs=31.6

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      .+|++++||.|.+|++.|...+.|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            4689999999999999999999999999999864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.85  E-value=7.3e-10  Score=62.84  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHh-hhccCCCC
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMR-RHRAAGLH  119 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~  119 (178)
                      +|++++||.|.+||+.|.+...|..|++ +|.++...
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            4789999999999999999999999999 99988633

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=3.6e-09  Score=55.64  Aligned_cols=33  Identities=24%  Similarity=0.539  Sum_probs=31.0

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            688999999999999999999999999999865

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.82  E-value=2.1e-09  Score=60.86  Aligned_cols=34  Identities=21%  Similarity=0.460  Sum_probs=29.9

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHH-hcCCCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRA-SHKKPR   71 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~   71 (178)
                      +|++++||.|.+|++.|....+|..|++ +|+++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            5899999999999999999999999999 998653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.1e-09  Score=56.74  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .|++++||.|++|++.|.....|..|+++|.+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678999999999999999999999999998864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=6.2e-09  Score=54.83  Aligned_cols=33  Identities=27%  Similarity=0.574  Sum_probs=30.7

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      .|++++||.|.+|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            578999999999999999999999999999864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=2.3e-08  Score=60.64  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=32.7

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      ..+.+++||+|.+|++.|.+...|..|+++|+++..
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            347789999999999999999999999999999753

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.76  E-value=3.9e-10  Score=58.23  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCCCCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAGLHG  120 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~  120 (178)
                      +||.|++||+.|.+.+.|..|+++|++++|++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCCC
Confidence            58999999999999999999999999998764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.76  E-value=3.7e-09  Score=56.24  Aligned_cols=34  Identities=32%  Similarity=0.581  Sum_probs=30.8

Q ss_pred             cCCCCCCCcCCc--ccccCCCchHHHHHHhhhccCC
Q 044181           84 LPIKPKTHECSV--CGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        84 ~h~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .|++++||.|.+  ||+.|.+.+.|..|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            467899999984  9999999999999999999874

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=4.7e-09  Score=67.42  Aligned_cols=47  Identities=13%  Similarity=0.176  Sum_probs=42.0

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccCCCCCCCCccc
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAGLHGNEKLSD  126 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~  126 (178)
                      .+.++|++++||.|++|++.|.+...|..|+++|++++||.|.....
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            44567899999999999999999999999999999999999976543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=2.3e-08  Score=60.60  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             cccCCCCCceecCcCCCcCCChHHHHHHHHhcCCCC
Q 044181           36 VNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        36 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      ...|.+++||+|.+|++.|...++|..|+++|++..
T Consensus         5 ~~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            5 SSGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             SCSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            356889999999999999999999999999998753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.72  E-value=2.2e-09  Score=60.46  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=34.1

Q ss_pred             ccccccCCCCCCCcCC--cccccCCCchHHHHHHhhhccCC
Q 044181           79 VDMQQLPIKPKTHECS--VCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        79 ~~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ..|+..|++++||.|.  .||+.|.+.+.|..|+++|++++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3455678899999996  79999999999999999999874

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.71  E-value=5.1e-09  Score=58.91  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             cccccCCCCCceecC--cCCCcCCChHHHHHHHHhcCCC
Q 044181           34 NGVNTMAAGRAFECK--TCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      .|..+|++++||.|.  .|++.|...++|..|+++|+++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            566789999999996  7999999999999999999865

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.71  E-value=4.2e-09  Score=56.13  Aligned_cols=26  Identities=31%  Similarity=0.658  Sum_probs=24.8

Q ss_pred             CCCCCCCcCCcccccCCCchHHHHHH
Q 044181           85 PIKPKTHECSVCGLEFAIGQALGGHM  110 (178)
Q Consensus        85 h~~~k~~~C~~Cgk~F~~~~~L~~H~  110 (178)
                      ++|+|||+|++|||+|.+.++|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            56899999999999999999999998

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.70  E-value=9.7e-09  Score=54.57  Aligned_cols=33  Identities=15%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             cCCCCCceecCc--CCCcCCChHHHHHHHHhcCCC
Q 044181           38 TMAAGRAFECKT--CNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        38 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      .|++++||.|.+  |++.|...+.|..|+++|+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            588999999995  999999999999999999864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.68  E-value=1.8e-08  Score=52.10  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=25.9

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +||.|++|++.|...++|..|+++|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~   28 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELL   28 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCC
Confidence            5899999999999999999999999853

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=1.1e-08  Score=54.48  Aligned_cols=32  Identities=25%  Similarity=0.595  Sum_probs=29.3

Q ss_pred             CCCCCceecC--cCCCcCCChHHHHHHHHhcCCC
Q 044181           39 MAAGRAFECK--TCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        39 H~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |++++||.|.  .|++.|...++|..|+++|+++
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   34 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMT   34 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCC
Confidence            6899999999  5999999999999999999854

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.64  E-value=1.9e-08  Score=49.77  Aligned_cols=29  Identities=34%  Similarity=0.643  Sum_probs=27.0

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +||.|.+||+.|.+...|..|+++|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999998864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.64  E-value=2e-08  Score=49.82  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=26.8

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +||.|++||+.|.+...|..|+++|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998763

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=51.18  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=27.6

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ++||.|.+||+.|.+...|..|+++|.+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            579999999999999999999999998764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.63  E-value=1.4e-08  Score=50.52  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +||.|++||+.|.+.+.|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.62  E-value=2.7e-08  Score=50.75  Aligned_cols=30  Identities=20%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             CCCCcCC--cccccCCCchHHHHHHhhhccCC
Q 044181           88 PKTHECS--VCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        88 ~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ++||.|.  .||+.|.+.+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            5799999  89999999999999999998864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.60  E-value=3.5e-08  Score=49.19  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=27.1

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +||.|.+||+.|.+.+.|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            58999999999999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.58  E-value=3.1e-08  Score=50.22  Aligned_cols=29  Identities=28%  Similarity=0.596  Sum_probs=26.7

Q ss_pred             CCCcCC--cccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECS--VCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +||.|+  .||+.|.+.+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  99999999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.58  E-value=1.9e-08  Score=49.83  Aligned_cols=29  Identities=28%  Similarity=0.572  Sum_probs=26.9

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +||.|.+||+.|.+...|..|+++|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999998864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=1.9e-08  Score=49.69  Aligned_cols=28  Identities=32%  Similarity=0.695  Sum_probs=25.9

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhcc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      ++||.|++||+.|.+.+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            5799999999999999999999999864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.56  E-value=4.2e-09  Score=54.21  Aligned_cols=31  Identities=10%  Similarity=0.111  Sum_probs=26.0

Q ss_pred             cccchhhhHHHhcCCCCCCcccccccCCCCCce
Q 044181           13 HSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAF   45 (178)
Q Consensus        13 ~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~   45 (178)
                      +||.|.+|++.|.+...|.  .|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~--~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALS--KHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTS--SSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHH--HHHHHHccCCCC
Confidence            4788888888888888885  888888888876

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=2.2e-08  Score=49.06  Aligned_cols=27  Identities=30%  Similarity=0.448  Sum_probs=25.1

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      ++||.|++||+.|.+.+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            579999999999999999999999884

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.97  E-value=8e-09  Score=51.80  Aligned_cols=30  Identities=33%  Similarity=0.412  Sum_probs=27.4

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ++||.|..||+.|.+.+.|..|+++|.+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            478999999999999999999999998763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=8.3e-09  Score=51.46  Aligned_cols=29  Identities=31%  Similarity=0.670  Sum_probs=26.7

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +||.|.+||+.|.+.+.|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999999998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.54  E-value=5.9e-08  Score=48.33  Aligned_cols=29  Identities=21%  Similarity=0.495  Sum_probs=26.7

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            57999999999999999999999999864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.53  E-value=1.8e-08  Score=49.57  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=25.0

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      ++||.|++||+.|.+.+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            579999999999999999999999874

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.53  E-value=4.7e-08  Score=47.68  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=24.0

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhccC
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ||.|.+||+.|.+...|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.51  E-value=7.2e-08  Score=47.12  Aligned_cols=27  Identities=26%  Similarity=0.616  Sum_probs=25.1

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      ++||.|.+||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            579999999999999999999999884

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.50  E-value=5.5e-08  Score=51.68  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=25.2

Q ss_pred             CCCCCceecCcCCCcCCChHHHHHHHH
Q 044181           39 MAAGRAFECKTCNRQFPSFQALGGHRA   65 (178)
Q Consensus        39 H~~~k~~~C~~C~k~f~~~~~L~~H~~   65 (178)
                      +++++||+|++||++|.+.++|.+|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            578999999999999999999999984

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.50  E-value=6e-08  Score=48.48  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             CCCcCCcccccCCCchHHHHH-HhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGH-MRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H-~~~H~~~~  117 (178)
                      +||.|..||+.|.+.+.|..| +++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 78998763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.49  E-value=1.1e-07  Score=46.99  Aligned_cols=28  Identities=36%  Similarity=0.710  Sum_probs=25.9

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +||.|.+|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.49  E-value=7.5e-08  Score=47.40  Aligned_cols=28  Identities=21%  Similarity=0.548  Sum_probs=25.6

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ++||.|.+|++.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            5799999999999999999999998863

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.46  E-value=5.3e-08  Score=47.76  Aligned_cols=27  Identities=22%  Similarity=0.616  Sum_probs=24.7

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      ++||.|.+||+.|...++|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            579999999999999999999998874

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.46  E-value=1.2e-07  Score=48.26  Aligned_cols=29  Identities=28%  Similarity=0.660  Sum_probs=26.4

Q ss_pred             CCceecC--cCCCcCCChHHHHHHHHhcCCC
Q 044181           42 GRAFECK--TCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        42 ~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      ++||.|.  .|++.|...+.|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            5799999  8999999999999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.46  E-value=8.3e-08  Score=47.53  Aligned_cols=28  Identities=25%  Similarity=0.457  Sum_probs=25.7

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +||.|++|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.80  E-value=2.7e-08  Score=48.28  Aligned_cols=26  Identities=35%  Similarity=0.709  Sum_probs=24.2

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhc
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      +||.|++||+.|.+.+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.42  E-value=1.8e-07  Score=47.26  Aligned_cols=28  Identities=29%  Similarity=0.678  Sum_probs=25.6

Q ss_pred             CceecC--cCCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECK--TCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +||.|.  .||+.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            589998  9999999999999999999865

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=1.2e-07  Score=46.85  Aligned_cols=28  Identities=25%  Similarity=0.551  Sum_probs=25.8

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +||.|.+|++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            5899999999999999999999999764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=1.5e-07  Score=46.35  Aligned_cols=28  Identities=21%  Similarity=0.539  Sum_probs=25.6

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5899999999999999999999999764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.39  E-value=2.3e-07  Score=46.08  Aligned_cols=28  Identities=14%  Similarity=0.408  Sum_probs=25.7

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      ++|.|.+|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccC
Confidence            5899999999999999999999999764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.39  E-value=2.1e-07  Score=45.22  Aligned_cols=26  Identities=35%  Similarity=0.719  Sum_probs=23.6

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ||.|.+|++.|...+.|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            68999999999999999999999975

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.5e-08  Score=48.88  Aligned_cols=26  Identities=35%  Similarity=0.641  Sum_probs=14.3

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      +||.|..|++.|...++|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            45555555555555555555555554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.8e-08  Score=48.55  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=14.5

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ||.|.+|++.|...++|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            45555555555555555555555543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.31  E-value=3.2e-07  Score=45.65  Aligned_cols=28  Identities=32%  Similarity=0.600  Sum_probs=24.7

Q ss_pred             CceecCcCCCcCCChHHHHHH-HHhcCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGH-RASHKKP   70 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H-~~~h~~~   70 (178)
                      +||.|..|++.|...+.|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            589999999999999999999 6888764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=1e-07  Score=46.10  Aligned_cols=25  Identities=24%  Similarity=0.681  Sum_probs=16.4

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhc
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      +||.|++||+.|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            3566666666666666666666655

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.23  E-value=3.3e-07  Score=45.15  Aligned_cols=27  Identities=26%  Similarity=0.461  Sum_probs=24.9

Q ss_pred             CCCcCC--cccccCCCchHHHHHHhhhcc
Q 044181           89 KTHECS--VCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        89 k~~~C~--~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      +||.|.  .||+.|.+.+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            579999  999999999999999999874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.11  E-value=1.2e-06  Score=43.06  Aligned_cols=27  Identities=26%  Similarity=0.623  Sum_probs=24.7

Q ss_pred             CceecC--cCCCcCCChHHHHHHHHhcCC
Q 044181           43 RAFECK--TCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        43 k~~~C~--~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999863

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.63  E-value=2.8e-05  Score=52.54  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=28.0

Q ss_pred             cccCCCCCCCcCCcccccCCCchHHHHHHhh
Q 044181           82 QQLPIKPKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        82 ~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      -..|+|+++|.|..|++.|.+.+.|..|+++
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3568899999999999999999999999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.15  E-value=8.4e-05  Score=50.17  Aligned_cols=32  Identities=25%  Similarity=0.329  Sum_probs=28.9

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHh
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      +-..|+|+++|.|..|++.|.+.++|..|+++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            44679999999999999999999999999874

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.0012  Score=39.28  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=41.7

Q ss_pred             CcCCCcCCChHHHHHHH-HhcCCCCCCCCCCCccccccCCCCCCCcCC--cccccCCCchHHHHHHhhh
Q 044181           48 KTCNRQFPSFQALGGHR-ASHKKPRFTDGNGGVDMQQLPIKPKTHECS--VCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        48 ~~C~k~f~~~~~L~~H~-~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H  113 (178)
                      ..|++.|.+...|..|+ ..|.+...-            ....+|.|.  .|++.+.....|..|+++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~------------~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFK------------HPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCC------------CSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccC------------CCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            45999999999999998 578653210            012479995  7999999889999999864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.76  E-value=0.0037  Score=42.34  Aligned_cols=69  Identities=16%  Similarity=0.221  Sum_probs=49.6

Q ss_pred             CceecCcCCCcCCChHHHHHHH--HhcCCC-----------CCC-CCCC-CccccccCCCCCCCcCCcccccCCCchHHH
Q 044181           43 RAFECKTCNRQFPSFQALGGHR--ASHKKP-----------RFT-DGNG-GVDMQQLPIKPKTHECSVCGLEFAIGQALG  107 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~--~~h~~~-----------~~~-~~c~-~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~  107 (178)
                      +++.|.+|+..|.+.+.+..|.  +.|...           .+. ..-. ...+...+.+.+.|-|..|++.|.+...+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            5789999999999999999998  556211           000 0000 012333466788899999999999999999


Q ss_pred             HHHh
Q 044181          108 GHMR  111 (178)
Q Consensus       108 ~H~~  111 (178)
                      .|..
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9975

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.00015  Score=43.20  Aligned_cols=47  Identities=11%  Similarity=0.170  Sum_probs=39.5

Q ss_pred             hhHHHhcCCCCCCccccc-ccCCCCC------ceecC--cCCCcCCChHHHHHHHHhc
Q 044181           19 NCLMFLSHGRGFNAVNGV-NTMAAGR------AFECK--TCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        19 ~C~~~f~~~~~l~~~~h~-~~H~~~k------~~~C~--~C~k~f~~~~~L~~H~~~h   67 (178)
                      .|++.|.+...|.  .|+ ..|.+.+      +|.|.  .|++.+.....|..|+++.
T Consensus         8 ~C~~~f~~~~~l~--~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQ--RHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHH--HHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHH--HHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4899999988885  787 5787765      89997  7999999999999999864

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.01  E-value=0.0043  Score=34.11  Aligned_cols=28  Identities=29%  Similarity=0.526  Sum_probs=24.0

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      -+|.|+.|+..|.....|+.||+--=++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            5799999999999999999999954333

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.16  E-value=0.021  Score=31.35  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhc
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      .+|.|+.|+..|.....|+.||+.-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            6899999999999999999999854

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.72  E-value=0.0047  Score=41.84  Aligned_cols=52  Identities=17%  Similarity=0.117  Sum_probs=39.2

Q ss_pred             CcccchhhhHHHhcCCCCCCccccc---------------------------------ccCCCCCceecCcCCCcCCChH
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGV---------------------------------NTMAAGRAFECKTCNRQFPSFQ   58 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~---------------------------------~~H~~~k~~~C~~C~k~f~~~~   58 (178)
                      .+++.|..|...|.....+.  .|.                                 ..+.+.+.|-|.+|++.|.+..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~--~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~  107 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKL--AHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPV  107 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHH--HHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHH
T ss_pred             CCCCcCcCCCCEeCCHHHHH--HHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHH
Confidence            46788999998887654432  222                                 1345567889999999999999


Q ss_pred             HHHHHHH
Q 044181           59 ALGGHRA   65 (178)
Q Consensus        59 ~L~~H~~   65 (178)
                      .+..|..
T Consensus       108 ~~~~H~~  114 (127)
T 1zu1_A          108 VAESHYI  114 (127)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9999975

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=89.03  E-value=0.23  Score=34.81  Aligned_cols=75  Identities=15%  Similarity=0.086  Sum_probs=42.6

Q ss_pred             Cceec--CcCCCcCCChHHHHHHHHhc-CCCCCCCCCCC-------ccccccCCCCCCCcCCcccccCCCchHHHHHHhh
Q 044181           43 RAFEC--KTCNRQFPSFQALGGHRASH-KKPRFTDGNGG-------VDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        43 k~~~C--~~C~k~f~~~~~L~~H~~~h-~~~~~~~~c~~-------~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      -...|  ..|+..+. ...|..|...= -....|..|+.       ..|+...-..+.-.|..|+..|. ...|..|..+
T Consensus        81 l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~  158 (170)
T 3hcs_A           81 LMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQN  158 (170)
T ss_dssp             SEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTT
T ss_pred             cccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHh
Confidence            34556  45665543 34556665321 11122556654       23443334567778999999885 5778999999


Q ss_pred             hccCCCC
Q 044181          113 HRAAGLH  119 (178)
Q Consensus       113 H~~~~~~  119 (178)
                      +.|+.++
T Consensus       159 ~~~~~~~  165 (170)
T 3hcs_A          159 CPLALEH  165 (170)
T ss_dssp             CCC----
T ss_pred             CcChhhh
Confidence            9988754

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=84.52  E-value=0.58  Score=23.80  Aligned_cols=25  Identities=28%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             ceecCcCCCcCCChHHHHHHHH-hcC
Q 044181           44 AFECKTCNRQFPSFQALGGHRA-SHK   68 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~-~h~   68 (178)
                      .|.|++|-+.|.+...|..|-. .|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            4999999999999999999965 443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=83.69  E-value=0.65  Score=23.62  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             CCcCCcccccCCCchHHHHHHh-hhcc
Q 044181           90 THECSVCGLEFAIGQALGGHMR-RHRA  115 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~-~H~~  115 (178)
                      .|.|++|.+.|.+...|..|-. .|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            4899999999999999999975 4543

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=82.41  E-value=1.1  Score=23.00  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=22.7

Q ss_pred             CCCceecCcCCCcCCChHHHHHHHHhc
Q 044181           41 AGRAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        41 ~~k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      ....+.|..|+-.|....++..|++.-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             ccCcCeeccccceehhhHHHhhhheec
Confidence            345788999999999999999998743

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=80.98  E-value=0.44  Score=30.82  Aligned_cols=12  Identities=8%  Similarity=0.296  Sum_probs=6.1

Q ss_pred             cccchhhhHHHh
Q 044181           13 HSLNMANCLMFL   24 (178)
Q Consensus        13 ~~~~C~~C~~~f   24 (178)
                      .||.|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            345555555444

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=80.88  E-value=0.52  Score=29.41  Aligned_cols=28  Identities=25%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccCCC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAAGL  118 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~  118 (178)
                      +.-..|-+||+.|.   .|.+|...|+|..|
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hgltp   46 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMTP   46 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSCH
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCCH
Confidence            33458999999997   48899999766644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	5e-12
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	1e-10

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.5 bits (134), Expect = 5e-12
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 43 RAFECKTCNRQFPSFQALGGHRASHKKPR 71
          R++ C  C R+F S QALGGH   H++ R
Sbjct: 4  RSYTCSFCKREFRSAQALGGHMNVHRRDR 32

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.6 bits (124), Expect = 1e-10
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 88  PKTHECSVCGLEFAIGQALGGHMRRHR 114
           P+++ CS C  EF   QALGGHM  HR
Sbjct: 3   PRSYTCSFCKREFRSAQALGGHMNVHR 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.74
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.68
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.55
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.54
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.48
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.46
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.44
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.43
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.43
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.41
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.34
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.32
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.29
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.28
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.28
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.28
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.22
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.19
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.17
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.15
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.13
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.12
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.08
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.06
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.01
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.97
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.96
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.95
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.91
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.9
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.85
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.84
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.75
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.71
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.67
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.63
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.49
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.45
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.22
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.21
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.16
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.11
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.94
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.92
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.92
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.9
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.89
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.82
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.8
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.8
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.72
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.69
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.65
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.65
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.65
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.51
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.46
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.45
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.45
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.44
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.41
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.33
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.29
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.28
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.18
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.14
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.03
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.01
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.77
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.76
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.75
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.49
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.37
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.24
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.1
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.07
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.02
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.96
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.62
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.53
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.31
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.99
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.9
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.24
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.0
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.86
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.01
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.91
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.89
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.0
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.27
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.23
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.81
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.68
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	89.62
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	86.98
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.89
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	86.61
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	85.4
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	84.27
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	80.08

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.5e-19  Score=102.31  Aligned_cols=53  Identities=28%  Similarity=0.652  Sum_probs=50.7

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCcccccCCCchHHHHHHhhh
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      ||||+|+ ||++|....+|..|+++|+                  |++||.|.+||+.|.+.++|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht------------------~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL------------------GLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS------------------CCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc------------------cccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            7899995 9999999999999999998                  699999999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.4e-19  Score=103.24  Aligned_cols=53  Identities=21%  Similarity=0.372  Sum_probs=50.7

Q ss_pred             CcccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCCcCCChHHHHHHHHhc
Q 044181           12 DHSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        12 ~~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      |++|.| .||+.|.....|.  .|+++|+|++||.|.+||++|...++|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~--~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRD--RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHH--HHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhH--HHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 5999999999996  9999999999999999999999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-15  Score=81.01  Aligned_cols=37  Identities=22%  Similarity=0.414  Sum_probs=35.6

Q ss_pred             cccccCCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           80 DMQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .|+++|+++|||+|++|||+|.+.++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5889999999999999999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.2e-15  Score=80.33  Aligned_cols=37  Identities=22%  Similarity=0.482  Sum_probs=35.5

Q ss_pred             cccccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           34 NGVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +|+++|+++|||+|++|||+|...++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6999999999999999999999999999999999975

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.5e-15  Score=75.54  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=31.7

Q ss_pred             cCCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           84 LPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        84 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      +|+|+|||+|.+||++|.+.++|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            588999999999999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-14  Score=73.91  Aligned_cols=33  Identities=18%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             cCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           38 TMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        38 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +|||+|||+|.+||++|...++|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            699999999999999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.5e-14  Score=75.08  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             ccccCCCCCCCcCCcccccCCCchHHHHHHhhhcc
Q 044181           81 MQQLPIKPKTHECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        81 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |.++|+|||||+|++||+.|.+.++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78899999999999999999999999999999975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.6e-14  Score=74.13  Aligned_cols=34  Identities=24%  Similarity=0.505  Sum_probs=32.3

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |+|||||||+|.+||++|...++|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            6899999999999999999999999999999865

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4.6e-14  Score=74.61  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=33.3

Q ss_pred             ccccCCCCCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           35 GVNTMAAGRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        35 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |.|+|||||||+|++|+++|...++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78999999999999999999999999999999964

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.6e-14  Score=74.11  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      ++|+|||||+|.+||++|.+.++|..|+++|.++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            57899999999999999999999999999998763

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.5e-14  Score=74.27  Aligned_cols=37  Identities=27%  Similarity=0.470  Sum_probs=34.3

Q ss_pred             CCCCCcCCcccccCCCchHHHHHHh-hhccCCCCCCCC
Q 044181           87 KPKTHECSVCGLEFAIGQALGGHMR-RHRAAGLHGNEK  123 (178)
Q Consensus        87 ~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~  123 (178)
                      -+|||+|++||+.|++.++|.+|++ +|+|++||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4899999999999999999999986 799999999964

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.1e-13  Score=72.51  Aligned_cols=37  Identities=30%  Similarity=0.790  Sum_probs=32.3

Q ss_pred             CCCceecCcCCCcCCChHHHHHHHH-hcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           41 AGRAFECKTCNRQFPSFQALGGHRA-SHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        41 ~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      .+|||+|++||++|...++|.+|++ +|+                  |+|||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht------------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT------------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC------------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC------------------CCcCcCCcC
Confidence            5799999999999999999999976 576                  789999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.8e-13  Score=70.96  Aligned_cols=32  Identities=16%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           85 PIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        85 h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      |+|+|||+|.+|++.|.+.++|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            78999999999999999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=5.2e-13  Score=69.19  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             CCCCCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           39 MAAGRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        39 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |||||||+|++|++.|...++|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            79999999999999999999999999999753

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.29  E-value=7e-13  Score=65.91  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=27.9

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      |||.|++||+.|++.++|.+|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=4.6e-13  Score=65.83  Aligned_cols=28  Identities=29%  Similarity=0.632  Sum_probs=27.1

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhcc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      ||||+|++|||.|.+.++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6999999999999999999999999987

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-12  Score=68.48  Aligned_cols=31  Identities=19%  Similarity=0.451  Sum_probs=28.7

Q ss_pred             ccCCCCCceecCcCCCcCCChHHHHHHHHhc
Q 044181           37 NTMAAGRAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        37 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      ++|||||||+|++|++.|..+++|..|++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            6899999999999999999999999997644

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.3e-13  Score=69.10  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=29.8

Q ss_pred             ccCCCCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           83 QLPIKPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        83 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ++|+|||||+|++||+.|++.++|..|++.+.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            5789999999999999999999999998654443

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-12  Score=64.97  Aligned_cols=29  Identities=24%  Similarity=0.527  Sum_probs=27.9

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      |||.|++||+.|.+.++|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2e-12  Score=63.49  Aligned_cols=28  Identities=29%  Similarity=0.653  Sum_probs=26.7

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ||||+|++|+++|..+++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            7999999999999999999999999975

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.19  E-value=6e-12  Score=62.42  Aligned_cols=29  Identities=34%  Similarity=0.716  Sum_probs=27.0

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      |||.|++|+++|...++|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999764

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.6e-12  Score=61.06  Aligned_cols=26  Identities=35%  Similarity=0.591  Sum_probs=25.0

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhc
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      |||+|.+|||+|.+.++|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999995

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=61.40  Aligned_cols=29  Identities=24%  Similarity=0.632  Sum_probs=26.8

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCCCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      |||.|.+||++|.++++|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999763

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=4.3e-12  Score=70.31  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=33.3

Q ss_pred             cccccCCCCCCCcCCc--ccccCCCchHHHHHHhhhccCC
Q 044181           80 DMQQLPIKPKTHECSV--CGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        80 ~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .|+ .|+|++||.|.+  ||+.|.+.++|..|+++|+|++
T Consensus         9 ~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           9 KYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            444 488999999987  9999999999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=7.3e-12  Score=69.34  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=33.4

Q ss_pred             cccccCCCCCceecCc--CCCcCCChHHHHHHHHhcCCCC
Q 044181           34 NGVNTMAAGRAFECKT--CNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        34 ~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      .|+ .|+|++||.|.+  |+++|...++|..|+++|+|++
T Consensus         9 ~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           9 KYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            565 599999999987  9999999999999999999763

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=58.43  Aligned_cols=26  Identities=23%  Similarity=0.632  Sum_probs=24.8

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |||+|.+|||+|...++|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.3e-11  Score=59.54  Aligned_cols=28  Identities=29%  Similarity=0.648  Sum_probs=26.8

Q ss_pred             CCCcCCc--ccccCCCchHHHHHHhhhccC
Q 044181           89 KTHECSV--CGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        89 k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      |||.|++  |||.|++.++|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999988  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.6e-11  Score=59.52  Aligned_cols=28  Identities=32%  Similarity=0.718  Sum_probs=26.5

Q ss_pred             CCCcCCc--ccccCCCchHHHHHHhhhccC
Q 044181           89 KTHECSV--CGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        89 k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      |||.|++  |||+|++.++|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999987  999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.2e-10  Score=60.56  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             CcCCc--ccccCCCchHHHHHHhhhccCCCCCCC
Q 044181           91 HECSV--CGLEFAIGQALGGHMRRHRAAGLHGNE  122 (178)
Q Consensus        91 ~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~~~~  122 (178)
                      |.|+.  ||+.|.+..+|.+|+++|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            77876  999999999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.3e-10  Score=56.82  Aligned_cols=28  Identities=21%  Similarity=0.579  Sum_probs=26.4

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |||.|++  |+++|..+++|.+|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999998  999999999999999999975

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.7e-10  Score=57.85  Aligned_cols=29  Identities=28%  Similarity=0.596  Sum_probs=26.9

Q ss_pred             CCCcCC--cccccCCCchHHHHHHhhhccCC
Q 044181           89 KTHECS--VCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        89 k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      |||.|+  .|||.|++.++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689995  59999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.5e-10  Score=56.81  Aligned_cols=28  Identities=25%  Similarity=0.511  Sum_probs=26.2

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |||.|++  |+++|...++|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999987  999999999999999999874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.4e-10  Score=58.80  Aligned_cols=33  Identities=24%  Similarity=0.543  Sum_probs=29.8

Q ss_pred             eecCc--CCCcCCChHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCCcCCc
Q 044181           45 FECKT--CNRQFPSFQALGGHRASHKKPRFTDGNGGVDMQQLPIKPKTHECSV   95 (178)
Q Consensus        45 ~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~c~~~~h~~~h~~~k~~~C~~   95 (178)
                      |.|+.  |+++|.+.++|.+|+++|+                  |+|||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht------------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS------------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH------------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC------------------CCCCEeCCC
Confidence            78876  9999999999999999998                  689999963

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=8.9e-10  Score=55.48  Aligned_cols=29  Identities=21%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             CCCCcCCc--ccccCCCchHHHHHHhhhccC
Q 044181           88 PKTHECSV--CGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        88 ~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ||||.|++  |||.|++.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999988  999999999999999999864

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.8e-10  Score=55.03  Aligned_cols=29  Identities=28%  Similarity=0.685  Sum_probs=26.0

Q ss_pred             CceecC--cCCCcCCChHHHHHHHHhcCCCC
Q 044181           43 RAFECK--TCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        43 k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      |||.|+  .|+++|...++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689996  59999999999999999999763

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=4.9e-10  Score=55.13  Aligned_cols=27  Identities=30%  Similarity=0.621  Sum_probs=25.5

Q ss_pred             CCCcCCc--ccccCCCchHHHHHHhhhcc
Q 044181           89 KTHECSV--CGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        89 k~~~C~~--Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |||.|++  |||.|++.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999977  99999999999999999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=2.7e-09  Score=53.66  Aligned_cols=28  Identities=29%  Similarity=0.700  Sum_probs=26.3

Q ss_pred             CCceecCc--CCCcCCChHHHHHHHHhcCC
Q 044181           42 GRAFECKT--CNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        42 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ||||.|.+  |++.|.+.++|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            68999988  99999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.8e-09  Score=52.52  Aligned_cols=26  Identities=27%  Similarity=0.566  Sum_probs=24.5

Q ss_pred             CCCcCCc--ccccCCCchHHHHHHhhhc
Q 044181           89 KTHECSV--CGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        89 k~~~C~~--Cgk~F~~~~~L~~H~~~H~  114 (178)
                      |||.|++  |||.|++.++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999988  9999999999999999995

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.2e-09  Score=52.76  Aligned_cols=27  Identities=30%  Similarity=0.653  Sum_probs=25.3

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhcCC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |||.|.+  |+++|...++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999988  99999999999999999975

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=3.8e-09  Score=49.63  Aligned_cols=27  Identities=30%  Similarity=0.598  Sum_probs=25.7

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      ||||.|++||+.|+.+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999985

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.7e-09  Score=50.98  Aligned_cols=26  Identities=31%  Similarity=0.687  Sum_probs=23.9

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhcC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h~   68 (178)
                      |||.|++  |||+|.+.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.3e-08  Score=46.25  Aligned_cols=26  Identities=42%  Similarity=0.787  Sum_probs=24.5

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhcc
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |++|+.|||.|+++..|..|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4e-08  Score=44.64  Aligned_cols=26  Identities=23%  Similarity=0.530  Sum_probs=24.0

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |.+|+.|++.|+++..|+.|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            67899999999999999999999975

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=6.5e-08  Score=45.35  Aligned_cols=27  Identities=26%  Similarity=0.582  Sum_probs=25.5

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |+||.|++||+.|..+...++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999985

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.8e-08  Score=47.58  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=29.9

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccCCCCC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAAGLHG  120 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~  120 (178)
                      .|...|+.|||.|...-+|.+|.-.|++++||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            356789999999999999999999999999884

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.8e-07  Score=44.52  Aligned_cols=29  Identities=34%  Similarity=0.697  Sum_probs=27.3

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ||||+|++|+..|..+..+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.3e-07  Score=42.20  Aligned_cols=28  Identities=29%  Similarity=0.451  Sum_probs=26.4

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |+||+|..|...-..++.|..|.+.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            6899999999999999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.9e-07  Score=41.79  Aligned_cols=27  Identities=22%  Similarity=0.465  Sum_probs=24.2

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      ...|.+|||+|..++.|++|..+|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            467999999999999999999999864

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.9e-07  Score=43.93  Aligned_cols=27  Identities=26%  Similarity=0.614  Sum_probs=24.5

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      +...|++|||.|.....|.+|+.+|++
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~   30 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSG   30 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCS
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCC
Confidence            567899999999999999999999984

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.7e-07  Score=42.19  Aligned_cols=27  Identities=30%  Similarity=0.549  Sum_probs=24.8

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhccC
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .+.|.+|||.|..++.|.+|.-+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            467999999999999999999999985

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5.7e-07  Score=42.71  Aligned_cols=28  Identities=21%  Similarity=0.513  Sum_probs=26.4

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      |+||.|++|...|.++..+..|.++|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            6899999999999999999999999975

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.11  E-value=5.1e-07  Score=46.03  Aligned_cols=30  Identities=50%  Similarity=0.887  Sum_probs=27.3

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccCC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      .+.|+|.+|++.|.+..+|..||+.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            357999999999999999999999998775

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=3.5e-06  Score=42.85  Aligned_cols=29  Identities=45%  Similarity=0.911  Sum_probs=26.2

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      .+.|+|.+|++.|.+...|-.|++.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            46799999999999999999999999654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.8e-06  Score=40.87  Aligned_cols=27  Identities=19%  Similarity=0.421  Sum_probs=23.9

Q ss_pred             CCCcCCc--ccccCCCchHHHHHHhhhcc
Q 044181           89 KTHECSV--CGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        89 k~~~C~~--Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |||.|.+  |+|++...++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899977  99999999999999997654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.92  E-value=3.5e-06  Score=37.72  Aligned_cols=24  Identities=33%  Similarity=0.654  Sum_probs=22.6

Q ss_pred             CcCCcccccCCCchHHHHHHhhhc
Q 044181           91 HECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      |+|..|.++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999985

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.2e-06  Score=39.77  Aligned_cols=29  Identities=21%  Similarity=0.474  Sum_probs=26.8

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ++||+|..|...-..++.|..|.+.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            68999999999999999999999999874

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.3e-06  Score=38.14  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      .|.|+.||.....++-|..|+++|+++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCC
Confidence            389999999999999999999999875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.82  E-value=8.1e-06  Score=36.49  Aligned_cols=24  Identities=38%  Similarity=0.776  Sum_probs=22.7

Q ss_pred             eecCcCCCcCCChHHHHHHHHhcC
Q 044181           45 FECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |+|..|.++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999985

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.6e-06  Score=38.34  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=25.2

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhc
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      .|||+|..|+..-..+++|..|.|+|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcccccccchhcchhhHhhhhhccc
Confidence            379999999999999999999999986

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.2e-06  Score=37.95  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             CcCCcccccCCCchHHHHHHhhhccCC
Q 044181           91 HECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      |.|++||......+.|.+|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999874

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.5e-05  Score=36.55  Aligned_cols=26  Identities=27%  Similarity=0.590  Sum_probs=24.8

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      +||+|..|..+-...++|+.|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999985

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=7.8e-06  Score=41.85  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=24.3

Q ss_pred             CCCCCCcCCcccccCCCchHHHHHHhh
Q 044181           86 IKPKTHECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        86 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      +|.|||.|.+|+|.|-+..++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            478999999999999999999999653

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=2.4e-05  Score=35.45  Aligned_cols=26  Identities=35%  Similarity=0.593  Sum_probs=23.7

Q ss_pred             ecCcCCCcCCChHHHHHHHHhcCCCC
Q 044181           46 ECKTCNRQFPSFQALGGHRASHKKPR   71 (178)
Q Consensus        46 ~C~~C~k~f~~~~~L~~H~~~h~~~~   71 (178)
                      +|+.|.+.|.++..|+.|.+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            59999999999999999999998763

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=1.9e-05  Score=35.77  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=24.5

Q ss_pred             cCCcccccCCCchHHHHHHhhhccCC
Q 044181           92 ECSVCGLEFAIGQALGGHMRRHRAAG  117 (178)
Q Consensus        92 ~C~~Cgk~F~~~~~L~~H~~~H~~~~  117 (178)
                      +|+.|.+.|.+.-+|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999985

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.1e-05  Score=37.15  Aligned_cols=26  Identities=19%  Similarity=0.572  Sum_probs=23.7

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhcC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h~   68 (178)
                      |||.|.+  |+|++..+++|..|++.+.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            6999988  9999999999999999765

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3.4e-05  Score=39.42  Aligned_cols=26  Identities=19%  Similarity=0.510  Sum_probs=23.8

Q ss_pred             CCCCceecCcCCCcCCChHHHHHHHH
Q 044181           40 AAGRAFECKTCNRQFPSFQALGGHRA   65 (178)
Q Consensus        40 ~~~k~~~C~~C~k~f~~~~~L~~H~~   65 (178)
                      +|-|||.|.+|+|.|-...++.+|.-
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            57799999999999999999999975

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.46  E-value=2.8e-05  Score=36.22  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=24.8

Q ss_pred             CCCcCCc--ccccCCCchHHHHHHhhhccC
Q 044181           89 KTHECSV--CGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        89 k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      +||.|.+  |.|.|.+..+|.+|.-+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5788855  999999999999999999885

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.45  E-value=2.9e-05  Score=35.96  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=22.9

Q ss_pred             CCCcCC--cccccCCCchHHHHHHhhhc
Q 044181           89 KTHECS--VCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        89 k~~~C~--~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      .||+|+  -|++.|+..+.|.+|.++|.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            488895  49999999999999999883

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.45  E-value=3.8e-05  Score=35.55  Aligned_cols=25  Identities=28%  Similarity=0.658  Sum_probs=22.5

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhc
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASH   67 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h   67 (178)
                      .||+|+-  |++.|..++.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4899964  999999999999999987

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=7.3e-05  Score=34.85  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=23.2

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhc
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      +||.|..|......+++|+.|+++.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhcc
Confidence            6999999999999999999999874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.44  E-value=3e-05  Score=36.12  Aligned_cols=28  Identities=32%  Similarity=0.743  Sum_probs=24.8

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +||.|.+  |.|.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5888865  999999999999999999864

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=7.3e-05  Score=34.86  Aligned_cols=28  Identities=29%  Similarity=0.515  Sum_probs=24.3

Q ss_pred             CCCcCCcccccCCCchHHHHHHhh-hccC
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRR-HRAA  116 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~-H~~~  116 (178)
                      |||+|..|...-+..++|..|.++ |..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            699999999999999999999986 5443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=1.6e-05  Score=37.89  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=24.5

Q ss_pred             CCCcCCc--ccccCCCchHHHHHH-hhhccC
Q 044181           89 KTHECSV--CGLEFAIGQALGGHM-RRHRAA  116 (178)
Q Consensus        89 k~~~C~~--Cgk~F~~~~~L~~H~-~~H~~~  116 (178)
                      |||.|+.  |.|.|+..+.-.+|+ |+|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6899977  999999999999997 888754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.33  E-value=3.4e-05  Score=36.75  Aligned_cols=27  Identities=22%  Similarity=0.416  Sum_probs=23.7

Q ss_pred             CCcCCcccccCCCchHHHHHHh-hhccC
Q 044181           90 THECSVCGLEFAIGQALGGHMR-RHRAA  116 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~-~H~~~  116 (178)
                      ||.|.+|++.|+...-|-+|.. .|.|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            7999999999999999999975 67664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=7.1e-05  Score=34.68  Aligned_cols=29  Identities=31%  Similarity=0.466  Sum_probs=26.9

Q ss_pred             CCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           88 PKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        88 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      ++-|.|..|...|...-.|+.||..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56799999999999999999999999985

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=4e-05  Score=36.49  Aligned_cols=27  Identities=19%  Similarity=0.640  Sum_probs=23.0

Q ss_pred             CceecCc--CCCcCCChHHHHHHH-HhcCC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHR-ASHKK   69 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~-~~h~~   69 (178)
                      |||.|+.  |.|+|...+.-..|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6899987  999999999999997 88863

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=6.7e-05  Score=34.81  Aligned_cols=24  Identities=25%  Similarity=0.599  Sum_probs=22.1

Q ss_pred             CCcCCcccccCCCchHHHHHHhhh
Q 044181           90 THECSVCGLEFAIGQALGGHMRRH  113 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H  113 (178)
                      ||.|..|.-.|.+.++|..||+.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999853

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00021  Score=33.06  Aligned_cols=29  Identities=28%  Similarity=0.499  Sum_probs=26.0

Q ss_pred             CCceecCcCCCcCCChHHHHHHHHhcCCC
Q 044181           42 GRAFECKTCNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        42 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      |.-|.|..|...|.+.-.|..|+..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45799999999999999999999999864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00018  Score=33.31  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=22.4

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhc
Q 044181           44 AFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      ||.|..|.-+|..+.+|..||++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999864

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00018  Score=36.15  Aligned_cols=28  Identities=29%  Similarity=0.540  Sum_probs=25.3

Q ss_pred             CCCCCcC--CcccccCCCchHHHHHHhhhc
Q 044181           87 KPKTHEC--SVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        87 ~~k~~~C--~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      .+|||.|  +-|+.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4899999  559999999999999999886

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00049  Score=31.89  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=22.6

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhc
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      +||+|..|.-.-.+.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            6999999999999999999998753

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00036  Score=32.34  Aligned_cols=26  Identities=19%  Similarity=0.579  Sum_probs=22.8

Q ss_pred             CCCcCCcccccCCCchHHHHHHhhhc
Q 044181           89 KTHECSVCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      +||+|..|.-.-.+.++|..|++.-+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            68999999988899999999987533

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00057  Score=34.23  Aligned_cols=28  Identities=25%  Similarity=0.623  Sum_probs=25.0

Q ss_pred             CCCceec--CcCCCcCCChHHHHHHHHhcC
Q 044181           41 AGRAFEC--KTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        41 ~~k~~~C--~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      .+|||.|  +-|+..|.+...|..|+..|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            5899999  559999999999999998873

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0005  Score=30.49  Aligned_cols=22  Identities=32%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             CCcCCcccccCCCchHHHHHHh
Q 044181           90 THECSVCGLEFAIGQALGGHMR  111 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~  111 (178)
                      ||+|..|...|-+...|..||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999984

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0013  Score=29.12  Aligned_cols=23  Identities=26%  Similarity=0.641  Sum_probs=21.1

Q ss_pred             CceecCcCCCcCCChHHHHHHHH
Q 044181           43 RAFECKTCNRQFPSFQALGGHRA   65 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~   65 (178)
                      .||+|..|...|-.+..|..|+.
T Consensus         1 mpykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999975

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.24  E-value=0.0012  Score=31.20  Aligned_cols=25  Identities=32%  Similarity=0.603  Sum_probs=21.9

Q ss_pred             ceecCcCCCcCCChHHHHHHHH-hcC
Q 044181           44 AFECKTCNRQFPSFQALGGHRA-SHK   68 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~-~h~   68 (178)
                      ||.|.+|++.|.+..-|.+|.. .|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            7999999999999999999975 454

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0019  Score=29.26  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             CCcCCcccccCCCchHHHHHHh
Q 044181           90 THECSVCGLEFAIGQALGGHMR  111 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~  111 (178)
                      ||+|..|||.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999999863

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.003  Score=28.59  Aligned_cols=23  Identities=30%  Similarity=0.590  Sum_probs=20.7

Q ss_pred             ceecCcCCCcCCChHHHHHHHHh
Q 044181           44 AFECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      ||+|..||+.+-++.+|..|..-
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            79999999999999999998753

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0016  Score=29.73  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.1

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhcc
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      |-+|.+|..+.++..+|+.|.|+|-.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999999853

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0027  Score=28.92  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=23.0

Q ss_pred             ceecCcCCCcCCChHHHHHHHHhcC
Q 044181           44 AFECKTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |-+|..|..+..++..|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999984

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0039  Score=32.74  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhcc
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRA  115 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~  115 (178)
                      -|.|..|||.|.....|+.|..-|.-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            58999999999999999999877654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.53  E-value=0.0026  Score=28.17  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             CcCCcccccCCCchHHHHHHhh
Q 044181           91 HECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        91 ~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      |.|+.|-+.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999885

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0052  Score=29.90  Aligned_cols=21  Identities=33%  Similarity=0.251  Sum_probs=18.5

Q ss_pred             ccccCCCchHHHHHHhhhccC
Q 044181           96 CGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        96 Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      =++.|...-.|..|+|+|+||
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            356799999999999999986

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0065  Score=31.85  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=23.0

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhc
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      .-|.|-+|||.|.....|+.|...|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            3588999999999999999999988

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.012  Score=28.31  Aligned_cols=27  Identities=22%  Similarity=0.540  Sum_probs=23.4

Q ss_pred             CceecCcCCCcCCChHHHHHHHHhcCC
Q 044181           43 RAFECKTCNRQFPSFQALGGHRASHKK   69 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~~h~~   69 (178)
                      ..|.|..|||.|.+...+.+|...-+|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            368999999999999999999876655

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.90  E-value=0.011  Score=26.12  Aligned_cols=22  Identities=18%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             eecCcCCCcCCChHHHHHHHHh
Q 044181           45 FECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        45 ~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      |.|+.|-+.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            8899999999999999999864

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.0089  Score=28.80  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=22.6

Q ss_pred             CCcCCcccccCCCchHHHHHHhhhccC
Q 044181           90 THECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .|.|..|||+|.+.-.+.+|.....|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            588999999999999999997765543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.012  Score=26.72  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=18.0

Q ss_pred             cccccCCCchHHHHHHhhhc
Q 044181           95 VCGLEFAIGQALGGHMRRHR  114 (178)
Q Consensus        95 ~Cgk~F~~~~~L~~H~~~H~  114 (178)
                      -|+|.|...+++++|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            49999999999999998874

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.017  Score=27.99  Aligned_cols=20  Identities=25%  Similarity=0.159  Sum_probs=17.5

Q ss_pred             CCcCCChHHHHHHHHhcCCC
Q 044181           51 NRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        51 ~k~f~~~~~L~~H~~~h~~~   70 (178)
                      ++.|.....|..|+|+|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            46799999999999999874

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.01  E-value=0.028  Score=25.16  Aligned_cols=24  Identities=29%  Similarity=0.706  Sum_probs=20.2

Q ss_pred             eec--CcCCCcCCChHHHHHHHHhcC
Q 044181           45 FEC--KTCNRQFPSFQALGGHRASHK   68 (178)
Q Consensus        45 ~~C--~~C~k~f~~~~~L~~H~~~h~   68 (178)
                      |.|  +-|+++|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            455  459999999999999998875

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.91  E-value=0.035  Score=28.86  Aligned_cols=30  Identities=17%  Similarity=0.336  Sum_probs=25.6

Q ss_pred             CCCCCcCCcccccCCCchHHHHHHhhhccC
Q 044181           87 KPKTHECSVCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        87 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      .+.|-.|++|+....++.+|++|...-+-.
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~   50 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            578999999999999999999998764433

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.89  E-value=0.036  Score=26.34  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.6

Q ss_pred             CceecCcCCCcCCChHHHHHHHH
Q 044181           43 RAFECKTCNRQFPSFQALGGHRA   65 (178)
Q Consensus        43 k~~~C~~C~k~f~~~~~L~~H~~   65 (178)
                      ..|.|.-||-.|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            45899999999999999999875

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.032  Score=25.13  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.8

Q ss_pred             CCcCCcccccCCCchHHHHHHhh
Q 044181           90 THECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      .|.|+-|+...++++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            37899999999999999999874

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.27  E-value=0.058  Score=25.06  Aligned_cols=28  Identities=29%  Similarity=0.559  Sum_probs=23.6

Q ss_pred             CCCcCC--cccccCCCchHHHHHHhhhccC
Q 044181           89 KTHECS--VCGLEFAIGQALGGHMRRHRAA  116 (178)
Q Consensus        89 k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~  116 (178)
                      |.|-|.  .|+..|+....|..|.-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            456674  5999999999999999999986

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.23  E-value=0.061  Score=25.51  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=20.6

Q ss_pred             CCCcCCcccccCCCchHHHHHHh
Q 044181           89 KTHECSVCGLEFAIGQALGGHMR  111 (178)
Q Consensus        89 k~~~C~~Cgk~F~~~~~L~~H~~  111 (178)
                      ..|.|.-||-.|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35899999999999999999975

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.81  E-value=0.079  Score=24.57  Aligned_cols=28  Identities=18%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             CceecCc--CCCcCCChHHHHHHHHhcCCC
Q 044181           43 RAFECKT--CNRQFPSFQALGGHRASHKKP   70 (178)
Q Consensus        43 k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   70 (178)
                      +.|.|..  |+-.|...+.|..|.-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4678865  999999999999999988864

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.68  E-value=0.095  Score=25.15  Aligned_cols=28  Identities=18%  Similarity=0.562  Sum_probs=23.9

Q ss_pred             CCCCceecCcCCCcCCChHHHHHHHHhc
Q 044181           40 AAGRAFECKTCNRQFPSFQALGGHRASH   67 (178)
Q Consensus        40 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h   67 (178)
                      .|+.-|.|.+|.+.+...+++-+|-.+-
T Consensus         4 Eg~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           4 EGEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            3566799999999999999999997654

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.13  Score=23.03  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             ceecCcCCCcCCChHHHHHHHHh
Q 044181           44 AFECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        44 ~~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      .|.|+-|+-...+++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999874

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.98  E-value=0.093  Score=29.78  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.8

Q ss_pred             CCcCCcccccCCCchHHHHHHhh
Q 044181           90 THECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      .|-|..|+|.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            48999999999999999999863

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.89  E-value=0.24  Score=25.56  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=23.3

Q ss_pred             CCCceecCcCCCcCCChHHHHHHHHh
Q 044181           41 AGRAFECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        41 ~~k~~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      .+.|..|++|+-...++.+|.+|...
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            57799999999999999999999753

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.61  E-value=0.44  Score=21.56  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=19.6

Q ss_pred             CCcCCcccccCCCchHHHHHHhh
Q 044181           90 THECSVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        90 ~~~C~~Cgk~F~~~~~L~~H~~~  112 (178)
                      -|.|.-|||...+...++-|.-.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            48999999999999998888643

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=0.22  Score=22.53  Aligned_cols=19  Identities=32%  Similarity=0.415  Sum_probs=16.5

Q ss_pred             CcccccCCCchHHHHHHhh
Q 044181           94 SVCGLEFAIGQALGGHMRR  112 (178)
Q Consensus        94 ~~Cgk~F~~~~~L~~H~~~  112 (178)
                      +-||+.|++..+|.-|.+-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4599999999999999874

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.27  E-value=0.12  Score=29.29  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=22.2

Q ss_pred             CCCceecCcCCCcCCChHHHHHHHHh
Q 044181           41 AGRAFECKTCNRQFPSFQALGGHRAS   66 (178)
Q Consensus        41 ~~k~~~C~~C~k~f~~~~~L~~H~~~   66 (178)
                      |...|-|..|+|.|.+...|..|.++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34568899999999999999999863

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.08  E-value=0.16  Score=25.16  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=16.8

Q ss_pred             cccchhhhHHHhcCCCCCCcccccccCCCCCceecCcCCC
Q 044181           13 HSLNMANCLMFLSHGRGFNAVNGVNTMAAGRAFECKTCNR   52 (178)
Q Consensus        13 ~~~~C~~C~~~f~~~~~l~~~~h~~~H~~~k~~~C~~C~k   52 (178)
                      .-|.|.+||-               ++.|+.|-.|++|+.
T Consensus         4 ~~~~C~vCG~---------------i~~g~~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGY---------------TAVDEAPEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCC---------------EEESCCCSBCTTTCC
T ss_pred             cEEECCCCCC---------------EecCCCCCcCCCCCC
Confidence            4567777772               333567788888885