BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044183
         (419 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
 pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
          Length = 137

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 26/152 (17%)

Query: 202 NITKALIDGHNFNVAASMLAASGVVEEFEADEGGAGITLFVPTDLAFADLPNNVKLQSL- 260
           +I +      +F    +   A+G+V+  + D      T+F PTD AFA LP       L 
Sbjct: 4   DIVETATGAGSFTTLLTAAEAAGLVDTLKGD---GPFTVFAPTDAAFAALPEGTVEDLLK 60

Query: 261 PADKKAV--VLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNIS---RVNGSV 315
           P +K+ +  +L +HV+         E + + +   +  E +  G  T+ +    +VNG  
Sbjct: 61  PENKEKLTEILTYHVVPG-------EVMSSDLTEGMTAETVEGGALTVTLEGGPKVNG-- 111

Query: 316 AIDTGLVQASVTQTVFDQNPLAIFGVSKVLLP 347
                    S++Q   D +   I  +  VL+P
Sbjct: 112 --------VSISQPDVDASNGVIHVIDGVLMP 135


>pdb|2K9S|A Chain A, Solution Structure Of Dna Binding Domain Of E. Coli Arac
          Length = 107

 Score = 30.8 bits (68), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 87  LSPSSLADLLRYHVLLQYLSWADLRKIPSSGILVTTLFQTTGRASSNFG 135
           LSPS L+ L R  + +  LSW + ++I  + +L++T          N G
Sbjct: 32  LSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVG 80


>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
           Tumerfaciens
 pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
           Tumerfaciens
          Length = 256

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 127 TGRASSNFGSVNISRNPATNAIAIHSPAPYSASNATVLTLIKTLPYNITILSINSLLVPY 186
           TG+A  + G        A+N    HSP  YS  +A ++ +I T  + I IL      VP 
Sbjct: 132 TGKAGIDLGGF------ASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPA 185

Query: 187 GF 188
           GF
Sbjct: 186 GF 187


>pdb|1KCR|L Chain L, Crystal Structure Of Antibody Pc283 In Complex With Ps1
           Peptide
          Length = 213

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 67  FLAVPNSYLNSPSSLDFTRRLSPSSLADLLRYHVLLQY 104
           +  VP+ +  S S+ DFT ++S     DL  YH    Y
Sbjct: 55  YTGVPDRFTGSGSATDFTLKISSVQAEDLADYHCGQTY 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,142,551
Number of Sequences: 62578
Number of extensions: 444802
Number of successful extensions: 1395
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 27
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)