Query 044183
Match_columns 419
No_of_seqs 253 out of 1425
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 1.4E-23 3.1E-28 189.5 8.7 134 201-351 48-185 (187)
2 KOG1437 Fasciclin and related 99.8 4.9E-19 1.1E-23 187.8 17.4 271 27-354 372-648 (682)
3 PF02469 Fasciclin: Fasciclin 99.8 2.2E-20 4.8E-25 160.9 3.8 124 211-347 1-128 (128)
4 smart00554 FAS1 Four repeated 99.7 1.4E-18 3.1E-23 143.4 5.1 96 239-348 1-99 (99)
5 COG2335 Secreted and surface p 99.7 9.7E-18 2.1E-22 151.8 7.3 135 28-188 47-184 (187)
6 PF02469 Fasciclin: Fasciclin 99.5 3.7E-15 8E-20 128.3 3.5 125 39-185 1-128 (128)
7 KOG1437 Fasciclin and related 99.5 2.3E-14 5E-19 152.5 8.2 149 171-347 356-507 (682)
8 smart00554 FAS1 Four repeated 99.2 1.2E-11 2.5E-16 102.0 3.6 97 66-186 1-99 (99)
9 PF06679 DUF1180: Protein of u 54.3 36 0.00078 30.9 6.0 17 402-418 97-113 (163)
10 PLN03148 Blue copper-like prot 45.0 32 0.00068 31.4 4.1 19 398-416 148-166 (167)
11 PRK15348 type III secretion sy 29.1 27 0.00058 33.9 1.1 58 14-76 8-66 (249)
12 PRK15324 type III secretion sy 24.7 50 0.0011 32.1 2.1 58 15-76 8-67 (252)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.4e-23 Score=189.49 Aligned_cols=134 Identities=27% Similarity=0.405 Sum_probs=112.5
Q ss_pred hhHHHHHhcCCChHHHHHHHHhcCchhhhhcCCCCCceEEEeeCcHHHhcCCCCccCCCC----CHHHHHHHhhhccccc
Q 044183 201 LNITKALIDGHNFNVAASMLAASGVVEEFEADEGGAGITLFVPTDLAFADLPNNVKLQSL----PADKKAVVLKFHVLHS 276 (419)
Q Consensus 201 ~nlt~~L~~~~~fstf~~lL~~t~l~~~l~~~~~~~~~TVFAPTD~AF~~L~~~~~l~~l----~~~~l~~lL~yHvvp~ 276 (419)
.+|.+....+++|++|..+++.++|.+++++.+ +||||||||+||++|+++ +++.| ++++|+++|.|||+++
T Consensus 48 ~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~g---p~TVFaPtn~AFa~lp~~-T~~~Ll~pen~~~L~~iLtYHVv~G 123 (187)
T COG2335 48 ADIVESAANNPSFTTLVAALKAAGLVDTLNETG---PFTVFAPTNEAFAKLPAG-TLDALLKPENKPLLTKILTYHVVEG 123 (187)
T ss_pred hHHHHHHccCcchHHHHHHHHhhhhHHHhcCCC---CeEEecCCHHHHHhCChh-HHHHHhCccchhhhheeeEEEEEcC
Confidence 467776668899999999999999999999987 999999999999999988 65543 6789999999999999
Q ss_pred cccCCcccccCCCccccccccccCCceEEEEEEEeCCEEEEEeCceeeEEEeecccCCCeEEEEeCccccCCCCc
Q 044183 277 YYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVLLPREIF 351 (419)
Q Consensus 277 ~~~~~~l~~~~~~v~~Tla~~~~~~~~~~l~v~~~g~~V~v~~g~~~a~V~~~~~~~~ngvIh~ID~VL~P~~~f 351 (419)
.+..+++.. .+.+ .|+.| . .++|...++.+.| ++++|+..++..+||+||+||+||+|++.-
T Consensus 124 k~~~~~l~~-~~~v-~t~~G-----~--~~~i~~~~~~~~V----n~a~v~~~di~a~NgvIhvID~Vl~Pp~~~ 185 (187)
T COG2335 124 KITAADLKS-SGSV-KTVQG-----A--DLKIKVTGGGVYV----NDATVTIADINASNGVIHVIDKVLIPPMDL 185 (187)
T ss_pred cccHHHhhc-cccc-eeecC-----c--eEEEEEcCCcEEE----eeeEEEeccEeccCcEEEEEeeeccCCCcc
Confidence 999999875 2445 37765 4 4555555555776 579999999999999999999999999753
No 2
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.81 E-value=4.9e-19 Score=187.78 Aligned_cols=271 Identities=18% Similarity=0.173 Sum_probs=182.1
Q ss_pred CCcCHHHHhCcCCChHHHHHHHHccCchhHHHhcCCCCeEEEEeCCcCcCCCCCCccccCCCHHHHHHHHHhhhhccccC
Q 044183 27 LALNITDLLLPYPDLSAFSALISSTSSAVAADLSHRSSITFLAVPNSYLNSPSSLDFTRRLSPSSLADLLRYHVLLQYLS 106 (419)
Q Consensus 27 ~a~nI~~~L~~~~~lS~f~~lL~~~~t~L~~~L~~~~~~TvfAPtN~AF~~l~~~~~~~~~~~~~L~~lL~yHVl~~~~~ 106 (419)
+..++.+++.+ .+-|++.+++.+ -++...|...+.+|+|+|+|++|+.+. ....+..++++|.||+++.+..
T Consensus 372 ~~~~l~~La~e-~~~st~~rlv~e--lgll~~L~~n~e~t~~lp~n~~fd~~~-----~~~~r~l~~qIL~~HII~~~~~ 443 (682)
T KOG1437|consen 372 SLKNLMSLARE-DEISTSMRLVAE--LGLLTALAPNDEATLLLPTNNLFDDLT-----PLESRRLAEQILYNHIIPEYLT 443 (682)
T ss_pred hHHHHHHHHhc-ccccHHHHHHHh--ccceEEEcCCCceEEeeehhhhccCCC-----hhhhHHHHHHHHHHhCcchhhh
Confidence 35677777665 678999999999 888888877777999999999999542 1233455899999999999988
Q ss_pred hhcccccCCCCceeeeeecccCCCCCCcceEEEEeCCCC-CeEEEeCCCCCCCcceEEEeeeeecccceeEEeecccccc
Q 044183 107 WADLRKIPSSGILVTTLFQTTGRASSNFGSVNISRNPAT-NAIAIHSPAPYSASNATVLTLIKTLPYNITILSINSLLVP 185 (419)
Q Consensus 107 ~~~L~~l~~~~~l~~Tl~q~tg~~~~~~g~vnit~~~~~-g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~Vh~Id~vL~P 185 (419)
.+++.. +++.++|+. ++.-.+-+.+.... +...+. .|+ . +.+...... ..||+||.||+|+.|
T Consensus 444 ~~~~y~---~~~~v~t~g-------~~~l~~fv~r~~~s~~~t~i~---~~~-~-~~Ii~aDi~-~~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 444 SSSMYN---GQTTVRTLG-------KNKLLYFVYRHSVSANVTDIL---IGN-E-ACIIEADIS-VKNGVVHIIDRVLDP 507 (682)
T ss_pred hhhhhc---ccceeeccC-------CeEEEEEEecccccccceeee---ccc-e-eeEEecccc-eecCceEEeeEEcCc
Confidence 887642 233444432 11111112221110 111110 122 2 444443222 468999999999866
Q ss_pred ccccccccCCCCCchhhHHHHHhcCCChHHHHHHHHhcCchhhhhcCCCCCceEEEeeCcHHHhcCCCCccCCCCCHHHH
Q 044183 186 YGFDLMASETRPPLGLNITKALIDGHNFNVAASMLAASGVVEEFEADEGGAGITLFVPTDLAFADLPNNVKLQSLPADKK 265 (419)
Q Consensus 186 ~~~~~~~~~~~~~~~~nlt~~L~~~~~fstf~~lL~~t~l~~~l~~~~~~~~~TVFAPTD~AF~~L~~~~~l~~l~~~~l 265 (419)
.++.+.|+++++++.|.++++..++.+++...+ .||+|+|||+||.+...+ ...--....+
T Consensus 508 ---------------~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~~~---~~t~fvPt~ka~~~~~~~-~~~~~~~~~l 568 (682)
T KOG1437|consen 508 ---------------VSLMEDLKTDGRISGTVQGLEGVLLPEELTPEG---NYTLFVPTNKAWQKSTKD-EKSLFHKKAL 568 (682)
T ss_pred ---------------ccHHHHHhhccchhhhHHhhhhcCChhhhccCC---ceEEEeecccccccCCcc-hhhcchHHHH
Confidence 256777889999999999999999999996554 999999999999997754 2211246789
Q ss_pred HHHhhhccccccccCCcccccCCCccccccccccCCceEEEEEEEeCCEEEEEe-----CceeeEEEeecccCCCeEEEE
Q 044183 266 AVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSVAIDT-----GLVQASVTQTVFDQNPLAIFG 340 (419)
Q Consensus 266 ~~lL~yHvvp~~~~~~~l~~~~~~v~~Tla~~~~~~~~~~l~v~~~g~~V~v~~-----g~~~a~V~~~~~~~~ngvIh~ 340 (419)
..+++||++++.+.+ +.. +.+ +... + +.+ ...++.+.+.. .++..++...++...||++|+
T Consensus 569 ~~~l~yH~v~~~~~l-s~~--~~~---~v~~-----~-~k~--s~~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~ 634 (682)
T KOG1437|consen 569 QDFLKYHLVPGQSRL-SLG--SSP---YVMI-----Q-VKL--SLRGDHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHV 634 (682)
T ss_pred HHHHHhccccceeee-ecc--ccc---ceee-----e-eeE--EEecccEEeeeeccccceeeeeeeccceeeecceeEE
Confidence 999999999987641 111 122 1111 1 222 22233332221 256677888899999999999
Q ss_pred eCccccCCCCcCCC
Q 044183 341 VSKVLLPREIFGKD 354 (419)
Q Consensus 341 ID~VL~P~~~f~~~ 354 (419)
||.||-|++++...
T Consensus 635 i~~vl~p~~l~~~n 648 (682)
T KOG1437|consen 635 IDLVLKPPDLPFLN 648 (682)
T ss_pred EEEEcccCcchhhc
Confidence 99999999777654
No 3
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.80 E-value=2.2e-20 Score=160.88 Aligned_cols=124 Identities=22% Similarity=0.380 Sum_probs=90.9
Q ss_pred CChHHHHHHHHhcCchhhhh-cCCCCCceEEEeeCcHHHhcCCCCccCCCC--CHHHHHHHhhhccccccccCCcccccC
Q 044183 211 HNFNVAASMLAASGVVEEFE-ADEGGAGITLFVPTDLAFADLPNNVKLQSL--PADKKAVVLKFHVLHSYYPLGSLESIV 287 (419)
Q Consensus 211 ~~fstf~~lL~~t~l~~~l~-~~~~~~~~TVFAPTD~AF~~L~~~~~l~~l--~~~~l~~lL~yHvvp~~~~~~~l~~~~ 287 (419)
++|++|.++|+++|+.+.|+ ... .+|||||+|+||++++.. ..+.+ +.+.++++|+||++++.++.+++....
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~~~~---~~TvfaP~d~a~~~~~~~-~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~ 76 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLNDSDG---NYTVFAPTDDAFQKLSQE-TNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK 76 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGCSSS---SEEEEEE-HHHHHHSHHH-HHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred CCHHHHHHHHHHcCCHHHHhcCCC---CEEEEEECHHHHHhcccc-ccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence 47999999999999999995 333 999999999999998533 22222 678999999999999999988887631
Q ss_pred CCcccc-ccccccCCceEEEEEEEeCCEEEEEeCceeeEEEeecccCCCeEEEEeCccccC
Q 044183 288 NPVQPT-LATEDMGAGRFTLNISRVNGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVLLP 347 (419)
Q Consensus 288 ~~v~~T-la~~~~~~~~~~l~v~~~g~~V~v~~g~~~a~V~~~~~~~~ngvIh~ID~VL~P 347 (419)
..+ +| +.+ ..+.++...+++.+.|++ .++|...++.+.||+||+||+||+|
T Consensus 77 ~~~-~t~~~g-----~~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 77 QTL-ETLLNG-----QPLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEE-EBSSTT-----CEEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred ccc-eeccCC-----CEEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence 134 35 433 444444442367788743 5999999999999999999999998
No 4
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.74 E-value=1.4e-18 Score=143.44 Aligned_cols=96 Identities=33% Similarity=0.494 Sum_probs=76.2
Q ss_pred EEEeeCcHHHhcCCCCccCCCCCHH-HHHHHhhhccccccccCCcccccCCCccccccccccCCceEEEEEEEeC--CEE
Q 044183 239 TLFVPTDLAFADLPNNVKLQSLPAD-KKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVN--GSV 315 (419)
Q Consensus 239 TVFAPTD~AF~~L~~~~~l~~l~~~-~l~~lL~yHvvp~~~~~~~l~~~~~~v~~Tla~~~~~~~~~~l~v~~~g--~~V 315 (419)
|||||+|+||++++.+ .++.+..+ .++++|+|||++++++.+++.. ...+ +|+.| . .+.++..+ +.+
T Consensus 1 TvfaP~d~Af~~~~~~-~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~-~Tl~g-----~--~l~v~~~~~~~~i 70 (99)
T smart00554 1 TVFAPTDEAFQKLPPG-TLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTL-PTLAG-----S--KLRVTRSGDSGTV 70 (99)
T ss_pred CEeCcCHHHHHhcCHH-HHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCcc-ccCCC-----C--EEEEEEeCCCCeE
Confidence 8999999999998754 34455433 8999999999999999998875 2334 57765 3 45666655 667
Q ss_pred EEEeCceeeEEEeecccCCCeEEEEeCccccCC
Q 044183 316 AIDTGLVQASVTQTVFDQNPLAIFGVSKVLLPR 348 (419)
Q Consensus 316 ~v~~g~~~a~V~~~~~~~~ngvIh~ID~VL~P~ 348 (419)
.+ ++++|+..++.++||+||+||+||+|+
T Consensus 71 ~i----n~~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 71 TV----NGARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred EE----cceEEEECCEecCCeEEEEECceeCCC
Confidence 76 457999999999999999999999996
No 5
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=9.7e-18 Score=151.77 Aligned_cols=135 Identities=21% Similarity=0.252 Sum_probs=100.1
Q ss_pred CcCHHHHhCcCCChHHHHHHHHccCchhHHHhcCCCCeEEEEeCCcCcCCCCCCc---cccCCCHHHHHHHHHhhhhccc
Q 044183 28 ALNITDLLLPYPDLSAFSALISSTSSAVAADLSHRSSITFLAVPNSYLNSPSSLD---FTRRLSPSSLADLLRYHVLLQY 104 (419)
Q Consensus 28 a~nI~~~L~~~~~lS~f~~lL~~~~t~L~~~L~~~~~~TvfAPtN~AF~~l~~~~---~~~~~~~~~L~~lL~yHVl~~~ 104 (419)
.++|.+...++++|++|..++.. ++|.++|++.|+||||||+|+||.+++... .....++..|+.+|.|||+.|.
T Consensus 47 ~~~iV~~a~~~~~f~tl~~a~~a--a~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk 124 (187)
T COG2335 47 RADIVESAANNPSFTTLVAALKA--AGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGK 124 (187)
T ss_pred hhHHHHHHccCcchHHHHHHHHh--hhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCc
Confidence 46888888899999999999999 999999999999999999999999774211 1233578999999999999999
Q ss_pred cChhcccccCCCCceeeeeecccCCCCCCcceEEEEeCCCCCeEEEeCCCCCCCcceEEEeeeeecccceeEEeeccccc
Q 044183 105 LSWADLRKIPSSGILVTTLFQTTGRASSNFGSVNISRNPATNAIAIHSPAPYSASNATVLTLIKTLPYNITILSINSLLV 184 (419)
Q Consensus 105 ~~~~~L~~l~~~~~l~~Tl~q~tg~~~~~~g~vnit~~~~~g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~Vh~Id~vL~ 184 (419)
++.+++..... +.|+ .| ..++|.... +.+.++. ++++.... ...||+||.||+||+
T Consensus 125 ~~~~~l~~~~~----v~t~---~G------~~~~i~~~~--~~~~Vn~--------a~v~~~di-~a~NgvIhvID~Vl~ 180 (187)
T COG2335 125 ITAADLKSSGS----VKTV---QG------ADLKIKVTG--GGVYVND--------ATVTIADI-NASNGVIHVIDKVLI 180 (187)
T ss_pred ccHHHhhcccc----ceee---cC------ceEEEEEcC--CcEEEee--------eEEEeccE-eccCcEEEEEeeecc
Confidence 99998864221 2222 11 235555443 3477642 33332211 247999999999999
Q ss_pred cccc
Q 044183 185 PYGF 188 (419)
Q Consensus 185 P~~~ 188 (419)
||..
T Consensus 181 Pp~~ 184 (187)
T COG2335 181 PPMD 184 (187)
T ss_pred CCCc
Confidence 9863
No 6
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.53 E-value=3.7e-15 Score=128.27 Aligned_cols=125 Identities=26% Similarity=0.363 Sum_probs=83.2
Q ss_pred CChHHHHHHHHccCchhHHHh-cCCCCeEEEEeCCcCcCCCCCCcccc--CCCHHHHHHHHHhhhhccccChhcccccCC
Q 044183 39 PDLSAFSALISSTSSAVAADL-SHRSSITFLAVPNSYLNSPSSLDFTR--RLSPSSLADLLRYHVLLQYLSWADLRKIPS 115 (419)
Q Consensus 39 ~~lS~f~~lL~~~~t~L~~~L-~~~~~~TvfAPtN~AF~~l~~~~~~~--~~~~~~L~~lL~yHVl~~~~~~~~L~~l~~ 115 (419)
|+||+|.++|++ +++.+.| +..+.+|||||+|+||+++. ..... ..+.+.++++|+||++++.+..++|...
T Consensus 1 ~~~s~f~~~l~~--~~l~~~l~~~~~~~TvfaP~d~a~~~~~-~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~-- 75 (128)
T PF02469_consen 1 PDLSTFSRLLEQ--AGLADLLNDSDGNYTVFAPTDDAFQKLS-QETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG-- 75 (128)
T ss_dssp -TTHHHHHHHHH--TTCHHHHGCSSSSEEEEEE-HHHHHHSH-HHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH--
T ss_pred CCHHHHHHHHHH--cCCHHHHhcCCCCEEEEEECHHHHHhcc-ccccchhhhhhhhHhhhhhhEEEcCceehhhhccc--
Confidence 789999999999 9999999 77799999999999998541 00111 1278899999999999999988887632
Q ss_pred CCceeeeeecccCCCCCCcceEEEEeCCCCCeEEEeCCCCCCCcceEEEeeeeecccceeEEeecccccc
Q 044183 116 SGILVTTLFQTTGRASSNFGSVNISRNPATNAIAIHSPAPYSASNATVLTLIKTLPYNITILSINSLLVP 185 (419)
Q Consensus 116 ~~~l~~Tl~q~tg~~~~~~g~vnit~~~~~g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~Vh~Id~vL~P 185 (419)
...+.|.+ . + ..+.++...+++.+.+.+ .+.+++... ...||.||.||+||+|
T Consensus 76 -~~~~~t~~--~----g--~~~~v~~~~~~~~~~v~~-------~a~i~~~~~-~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 76 -KQTLETLL--N----G--QPLRVSSSPSNGTIYVNG-------KARIVKSDI-EASNGVIHIIDDVLIP 128 (128)
T ss_dssp -HEEEEBSS--T----T--CEEEEEEEGGTTEEEECC-------EEEESEEEE-EESSEEEEEESS-TSS
T ss_pred -cccceecc--C----C--CEEEEEEEecCCceEecC-------ceEEEeCCE-EeCCEEEEEECceECc
Confidence 12233321 1 1 245555553227788743 355554322 4579999999999987
No 7
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.51 E-value=2.3e-14 Score=152.47 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=111.8
Q ss_pred ccceeEEeeccccccccccccccCCCCCchhhHHHHHhcCCChHHHHHHHHhcCchhhhhcCCCCCceEEEeeCcHHHhc
Q 044183 171 PYNITILSINSLLVPYGFDLMASETRPPLGLNITKALIDGHNFNVAASMLAASGVVEEFEADEGGAGITLFVPTDLAFAD 250 (419)
Q Consensus 171 ~~Ng~Vh~Id~vL~P~~~~~~~~~~~~~~~~nlt~~L~~~~~fstf~~lL~~t~l~~~l~~~~~~~~~TVFAPTD~AF~~ 250 (419)
..|+.||.||.++.|+.. .+++++. ...+.+++.+++.+-++.+.|...+ .+|+|+|+|+||++
T Consensus 356 ~~~~~lh~id~~l~p~~~------------~~l~~La-~e~~~st~~rlv~elgll~~L~~n~---e~t~~lp~n~~fd~ 419 (682)
T KOG1437|consen 356 HTNGLLHYIDYVLEPDSL------------KNLMSLA-REDEISTSMRLVAELGLLTALAPND---EATLLLPTNNLFDD 419 (682)
T ss_pred ccceEEEEcccccCCchH------------HHHHHHH-hcccccHHHHHHHhccceEEEcCCC---ceEEeeehhhhccC
Confidence 445889999999988632 5788887 6778999999999999999776655 59999999999999
Q ss_pred CCCCccCCCCCHHHHHHHhhhccccccccCCcccccCCCccccccccccCCceEEEEEEEeCCEE---EEEeCceeeEEE
Q 044183 251 LPNNVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSV---AIDTGLVQASVT 327 (419)
Q Consensus 251 L~~~~~l~~l~~~~l~~lL~yHvvp~~~~~~~l~~~~~~v~~Tla~~~~~~~~~~l~v~~~g~~V---~v~~g~~~a~V~ 327 (419)
+... +...-++++|+||+++.+...++.....+-+ +|+.+ .++..-+.+..++. .+..|. .+.|.
T Consensus 420 ~~~~-----~~r~l~~qIL~~HII~~~~~~~~~y~~~~~v-~t~g~-----~~l~~fv~r~~~s~~~t~i~~~~-~~~Ii 487 (682)
T KOG1437|consen 420 LTPL-----ESRRLAEQILYNHIIPEYLTSSSMYNGQTTV-RTLGK-----NKLLYFVYRHSVSANVTDILIGN-EACII 487 (682)
T ss_pred CChh-----hhHHHHHHHHHHhCcchhhhhhhhhccccee-eccCC-----eEEEEEEecccccccceeeeccc-eeeEE
Confidence 7642 1222378999999999999988887644345 35543 44444444432221 222232 49999
Q ss_pred eecccCCCeEEEEeCccccC
Q 044183 328 QTVFDQNPLAIFGVSKVLLP 347 (419)
Q Consensus 328 ~~~~~~~ngvIh~ID~VL~P 347 (419)
..|+..+||+||.||+||.|
T Consensus 488 ~aDi~~~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 488 EADISVKNGVVHIIDRVLDP 507 (682)
T ss_pred ecccceecCceEEeeEEcCc
Confidence 99999999999999999999
No 8
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.19 E-value=1.2e-11 Score=102.04 Aligned_cols=97 Identities=25% Similarity=0.340 Sum_probs=63.0
Q ss_pred EEEEeCCcCcCCCCCCccccC--CCHHHHHHHHHhhhhccccChhcccccCCCCceeeeeecccCCCCCCcceEEEEeCC
Q 044183 66 TFLAVPNSYLNSPSSLDFTRR--LSPSSLADLLRYHVLLQYLSWADLRKIPSSGILVTTLFQTTGRASSNFGSVNISRNP 143 (419)
Q Consensus 66 TvfAPtN~AF~~l~~~~~~~~--~~~~~L~~lL~yHVl~~~~~~~~L~~l~~~~~l~~Tl~q~tg~~~~~~g~vnit~~~ 143 (419)
|||||+|+||+++.. ..... .++ .++++|+||++++++..++|.. +..++|+. | ..+.++...
T Consensus 1 TvfaP~d~Af~~~~~-~~~~~l~~~~-~l~~ll~~Hiv~~~~~~~~l~~----~~~~~Tl~---g------~~l~v~~~~ 65 (99)
T smart00554 1 TVFAPTDEAFQKLPP-GTLNSLLADP-KLKNLLLYHVVPGRLSSADLLN----GGTLPTLA---G------SKLRVTRSG 65 (99)
T ss_pred CEeCcCHHHHHhcCH-HHHHHHhCCH-HHHHHHHhcEeCceEcHHHhcc----CCccccCC---C------CEEEEEEeC
Confidence 899999999996531 11111 223 8999999999999999988863 23345542 2 235565543
Q ss_pred CCCeEEEeCCCCCCCcceEEEeeeeecccceeEEeeccccccc
Q 044183 144 ATNAIAIHSPAPYSASNATVLTLIKTLPYNITILSINSLLVPY 186 (419)
Q Consensus 144 ~~g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~Vh~Id~vL~P~ 186 (419)
+.+.+.++. +.+++... ...||+||.||+||+|+
T Consensus 66 ~~~~i~in~--------~~v~~~di-~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 66 DSGTVTVNG--------ARIVEADI-AATNGVVHVIDRVLLPP 99 (99)
T ss_pred CCCeEEEcc--------eEEEECCE-ecCCeEEEEECceeCCC
Confidence 214565532 24444322 24699999999999985
No 9
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=54.27 E-value=36 Score=30.93 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhheee
Q 044183 402 SYVVAAALCCIGLLYVL 418 (419)
Q Consensus 402 ~~~~~~~~~~~~~~~~~ 418 (419)
.+.+..+++++.++|+|
T Consensus 97 ~~~Vl~g~s~l~i~yfv 113 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFV 113 (163)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44455556655555543
No 10
>PLN03148 Blue copper-like protein; Provisional
Probab=45.01 E-value=32 Score=31.41 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHhhhe
Q 044183 398 LQWRSYVVAAALCCIGLLY 416 (419)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ 416 (419)
.+++..++..+++|+|..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~ 166 (167)
T PLN03148 148 VALRGLVLWMASIWFGSGW 166 (167)
T ss_pred hhhhhhhhHHHHHHhhccc
Confidence 3555677777888888654
No 11
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=29.06 E-value=27 Score=33.95 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCCCcCHHHHhCcCCChHHHHHHHHccCchhHHHhc-CCCCeEEEEeCCcCcC
Q 044183 14 IITYLLLITTPPILALNITDLLLPYPDLSAFSALISSTSSAVAADLS-HRSSITFLAVPNSYLN 76 (419)
Q Consensus 14 ~~~~l~~~~~~~~~a~nI~~~L~~~~~lS~f~~lL~~~~t~L~~~L~-~~~~~TvfAPtN~AF~ 76 (419)
.++++++++++|. ..++.-|.. .+.....+.|.+ .|+..+.. +.+..||.+|.++.-+
T Consensus 8 ~~~~~~~~l~gC~--~~LysgL~~-~dA~~I~a~L~~--~gI~y~~~~~~~G~tI~Vp~~~~~~ 66 (249)
T PRK15348 8 FLTVLTFFLTACD--VDLYRSLPE-DEANQMLALLMQ--HHIDAEKKQEEDGVTLRVEQSQFIN 66 (249)
T ss_pred HHHHHHHHHhcCC--hHHHcCCCH-HHHHHHHHHHHH--cCCCceEeeCCCCeEEEecHHHHHH
Confidence 3344455667774 346665654 677888888888 78876553 4567999999877654
No 12
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=24.74 E-value=50 Score=32.14 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCCCCcCHHHHhCcCCChHHHHHHHHccCchhHHHhcCCC--CeEEEEeCCcCcC
Q 044183 15 ITYLLLITTPPILALNITDLLLPYPDLSAFSALISSTSSAVAADLSHRS--SITFLAVPNSYLN 76 (419)
Q Consensus 15 ~~~l~~~~~~~~~a~nI~~~L~~~~~lS~f~~lL~~~~t~L~~~L~~~~--~~TvfAPtN~AF~ 76 (419)
++.++++++.|... .++.-|.. .+..+..+.|.+ .|+..++.+.+ ..||.+|.++.-+
T Consensus 8 ~~~~~~lLs~c~~~-~Lys~L~~-~dAneIv~~L~~--~gI~y~~~~~gk~G~tI~V~~~d~~~ 67 (252)
T PRK15324 8 TFLLVMTLAGCKDK-DLLKGLDQ-EQANEVIAVLQM--HNIEANKIDSGKLGYSITVAEPDFTA 67 (252)
T ss_pred HHHHHHHHcCCCee-hhhcCCCH-HHHHHHHHHHHH--CCCCeEeccCCCCceEEEEcHHHHHH
Confidence 33445566777654 57776765 677888888888 88887776543 6899999766544
Done!