Query 044183
Match_columns 419
No_of_seqs 253 out of 1425
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o70_A Fasciclin I, FAS I, FCN 100.0 1.8E-44 6E-49 358.4 11.1 289 26-352 3-314 (324)
2 1w7d_A Fasciclin-like protein; 99.9 1.2E-26 4E-31 202.8 3.8 131 201-349 3-137 (137)
3 2vxp_A Transforming growth fac 99.9 1.7E-25 5.7E-30 194.2 9.4 128 202-346 3-132 (132)
4 1nyo_A Immunogenic protein MPT 99.9 1.7E-25 5.7E-30 201.3 5.2 130 200-349 27-163 (163)
5 1o70_A Fasciclin I, FAS I, FCN 99.8 2.1E-21 7.2E-26 192.3 8.0 138 201-349 6-158 (324)
6 1w7d_A Fasciclin-like protein; 99.8 3.7E-20 1.3E-24 161.4 5.4 131 28-186 2-136 (137)
7 2vxp_A Transforming growth fac 99.8 1.3E-18 4.4E-23 150.7 8.2 129 29-184 2-132 (132)
8 1nyo_A Immunogenic protein MPT 99.7 9.7E-19 3.3E-23 157.0 5.6 129 28-186 27-162 (163)
9 2xk0_A Polycomb protein PCL; t 15.9 58 0.002 24.1 1.4 7 358-364 4-10 (69)
10 2jp3_A FXYD domain-containing 15.9 58 0.002 24.0 1.4 18 400-417 19-36 (67)
No 1
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=100.00 E-value=1.8e-44 Score=358.42 Aligned_cols=289 Identities=17% Similarity=0.180 Sum_probs=211.2
Q ss_pred CCCcCHHHHhC------cCCChHHHHHHHHccCch--hHHHhcCCCCeEEEEeCCcCcCCCCCCccccCCCHHHHHHHHH
Q 044183 26 ILALNITDLLL------PYPDLSAFSALISSTSSA--VAADLSHRSSITFLAVPNSYLNSPSSLDFTRRLSPSSLADLLR 97 (419)
Q Consensus 26 ~~a~nI~~~L~------~~~~lS~f~~lL~~~~t~--L~~~L~~~~~~TvfAPtN~AF~~l~~~~~~~~~~~~~L~~lL~ 97 (419)
+...||+++|+ ++++||+|.++|++ ++ |.++|++.++||||||+|+||+++. ...+ ..+++.|+++|+
T Consensus 3 ~~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~--ag~~l~~~L~~~~~~TvFAPtn~Af~~~~-~~~l-~~~~~~l~~iL~ 78 (324)
T 1o70_A 3 AADTTVTQFLQSFKENAENGALRKFYEVIMD--NGGAVLDDINSLTEVTILAPSNEAWNSSN-INNV-LRDRNKMRQILN 78 (324)
T ss_dssp ----------------CCHHHHHHHHHHHHH--TCSHHHHHHHTCSSEEEEEECHHHHHHTC-THHH-HTCHHHHHHHHH
T ss_pred eehhhHHHHHHHHHhhhcCCcHHHHHHHHHH--HhHHHHHHHcCCCCeEEEEEChHhhhccc-Hhhh-hCCHHHHHHHHH
Confidence 45678999998 68999999999999 88 9999999999999999999998431 1111 137899999999
Q ss_pred hhhhccccChhcccccCCCC-ceeeeeecccCCCCCCcceEEEEeCCCCCeEEEeCCCCCCCcceEEEeeeeecccceeE
Q 044183 98 YHVLLQYLSWADLRKIPSSG-ILVTTLFQTTGRASSNFGSVNISRNPATNAIAIHSPAPYSASNATVLTLIKTLPYNITI 176 (419)
Q Consensus 98 yHVl~~~~~~~~L~~l~~~~-~l~~Tl~q~tg~~~~~~g~vnit~~~~~g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~V 176 (419)
|||+++++..++|.....++ ..++|+... ...+++++...+++.+.+.. +..++++++... ...||+|
T Consensus 79 yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~------~~l~~~v~~~~~~~~v~v~~----g~~~a~v~~~di-~~~NGvI 147 (324)
T 1o70_A 79 MHIIKDRLNVDKIRQKNANLIAQVPTVNNN------TFLYFNVRGEGSDTVITVEG----GGVNATVIQADV-AQTNGYV 147 (324)
T ss_dssp HTEESSCCCHHHHHHHTSSSCCCEEBSSTT------CEEEEEEESCGGGCEEEEEE----TTEEEEEEEEEE-ECSSEEE
T ss_pred hcEeCCeecHHHHhhccCCCceEEEcCCCC------ceEEEEEeecCCceEEEEcC----CceeEEEEeccc-cccCcEE
Confidence 99999999999987654221 245665421 11345655321114576643 233577776522 3579999
Q ss_pred EeeccccccccccccccCCCCCchhhHHHHHhcCCChHHHHHHHHhcCchhhhhcCCCCCceEEEeeCcHHHhcCC----
Q 044183 177 LSINSLLVPYGFDLMASETRPPLGLNITKALIDGHNFNVAASMLAASGVVEEFEADEGGAGITLFVPTDLAFADLP---- 252 (419)
Q Consensus 177 h~Id~vL~P~~~~~~~~~~~~~~~~nlt~~L~~~~~fstf~~lL~~t~l~~~l~~~~~~~~~TVFAPTD~AF~~L~---- 252 (419)
|.||+||.||. .++.++|+..++|++|.++++++|+.++|++.. .+||||||||+||++++
T Consensus 148 hvID~VL~pp~-------------~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~~--~~~TvFAPtd~Af~~l~~~~~ 212 (324)
T 1o70_A 148 HIIDHVLGVPY-------------TTVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQ--RRFTYFVPRDKGWQKTELDYP 212 (324)
T ss_dssp EEESSCTTSCC-------------SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGCSS--SEEEEEEECHHHHHHHHHHCH
T ss_pred EEEchhhhhch-------------hhHHHHhhcCchHHHHHHHHHhhCHHHHhCCCC--CCeEEEEeChHHHHhhhhhch
Confidence 99999999863 378999988999999999999999999998422 28999999999999974
Q ss_pred CCccCCCCC---HHHHHHHhhhccccc--cccCCcccccCC-----CccccccccccCCceEEEEEEEeCCEEEEEeCce
Q 044183 253 NNVKLQSLP---ADKKAVVLKFHVLHS--YYPLGSLESIVN-----PVQPTLATEDMGAGRFTLNISRVNGSVAIDTGLV 322 (419)
Q Consensus 253 ~~~~l~~l~---~~~l~~lL~yHvvp~--~~~~~~l~~~~~-----~v~~Tla~~~~~~~~~~l~v~~~g~~V~v~~g~~ 322 (419)
.+ .++.+. .++++++|+|||+++ +|+.++|.+..+ .+ +|+. +.+.+++...|+.+.|+.+.+
T Consensus 213 ~~-~~~~l~~~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~-~Tl~------~~l~v~~~~~~~~v~v~~~~~ 284 (324)
T 1o70_A 213 SA-HKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVIL-PTFR------DSLSIRVEEEAGRYVIIWNYK 284 (324)
T ss_dssp HH-HHHHTSGGGHHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEE-ECSS------SEEEEEEEEETTEEEEEETTE
T ss_pred hH-HHHHhccCcHHHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeee-eccC------CcEEEEEEecCCEEEEEecCc
Confidence 22 223332 258999999999998 888788875322 13 3543 457777777788999987667
Q ss_pred eeEEEeecccCCCeEEEEeCccccCCCCcC
Q 044183 323 QASVTQTVFDQNPLAIFGVSKVLLPREIFG 352 (419)
Q Consensus 323 ~a~V~~~~~~~~ngvIh~ID~VL~P~~~f~ 352 (419)
+++|+.+++.+.||+||+||+||+|++...
T Consensus 285 ~a~v~~~di~~~NGvIHvID~VL~P~~~~~ 314 (324)
T 1o70_A 285 KINVYRPDVECTNGIIHVIDYPLLEEKDVV 314 (324)
T ss_dssp EEEEEEEEEEETTEEEEEESSCSCCTTTTC
T ss_pred eeEEEEcccccCCCeEEEeceeecCCcccc
Confidence 899999999999999999999999997653
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.92 E-value=1.2e-26 Score=202.75 Aligned_cols=131 Identities=25% Similarity=0.382 Sum_probs=111.4
Q ss_pred hhHHHHHhcCCChHHHHHHHHhcCchhhhhcCCCCCceEEEeeCcHHHhcCCCCccCCCC----CHHHHHHHhhhccccc
Q 044183 201 LNITKALIDGHNFNVAASMLAASGVVEEFEADEGGAGITLFVPTDLAFADLPNNVKLQSL----PADKKAVVLKFHVLHS 276 (419)
Q Consensus 201 ~nlt~~L~~~~~fstf~~lL~~t~l~~~l~~~~~~~~~TVFAPTD~AF~~L~~~~~l~~l----~~~~l~~lL~yHvvp~ 276 (419)
.||.++|+..++|++|.++|+++|+.+.|++.+ +||||||||+||++++.+ .++.+ ++++++++|+|||+++
T Consensus 3 ~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~~---~~TvFAPtn~Af~~l~~~-~~~~l~~~~~~~~l~~lL~yHvv~~ 78 (137)
T 1w7d_A 3 GDIVETATGAGSFTTLLTAAEAAGLVDTLKGDG---PFTVFAPTDAAFAALPEG-TVEDLLKPENKEKLTEILTYHVVPG 78 (137)
T ss_dssp STTGGGGGSCSSSTTTTHHHHHTTTHHHHTSSS---CEEEECCCHHHHTTSTTT-HHHHTTSHHHHHHHHHHHHHHEEES
T ss_pred CCHHHHHHhCCCHHHHHHHHHHcCCHHHHcCCC---CEEEEEECHHHHHHcCHh-HHHHHhCcCCHHHHHHHHHhhEeCc
Confidence 478899988999999999999999999998765 999999999999999876 55555 5788999999999999
Q ss_pred cccCCcccccCCCccccccccccCCceEEEEEEEeCCEEEEEeCceeeEEEeecccCCCeEEEEeCccccCCC
Q 044183 277 YYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVLLPRE 349 (419)
Q Consensus 277 ~~~~~~l~~~~~~v~~Tla~~~~~~~~~~l~v~~~g~~V~v~~g~~~a~V~~~~~~~~ngvIh~ID~VL~P~~ 349 (419)
.++.+++... ..+ +|+.| + .++|+..+| +.| ++++|+..|+.+.||+||+||+||+|+.
T Consensus 79 ~~~~~~l~~~-~~~-~tl~G-----~--~l~v~~~~g-v~v----n~a~v~~~di~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 79 EVMSSDLTEG-MTA-ETVEG-----G--ALTVTLEGG-PKV----NGVSISQPDVDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp CCCTTTSCSS-EEE-ECTTS-----C--EEEEECTTS-CEE----TTEECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred EEcHHHhcCC-Cee-eccCC-----c--eEEEEecCC-EEE----eCcEEEECCeecCCeEEEEECeeeCCCC
Confidence 9999998752 234 47765 3 577777777 777 3489999999999999999999999973
No 3
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.92 E-value=1.7e-25 Score=194.24 Aligned_cols=128 Identities=21% Similarity=0.345 Sum_probs=107.9
Q ss_pred hHHHHHhcCCChHHHHHHHHhcCchhhhhcCCCCCceEEEeeCcHHHhcCCCCccCCCC--CHHHHHHHhhhcccccccc
Q 044183 202 NITKALIDGHNFNVAASMLAASGVVEEFEADEGGAGITLFVPTDLAFADLPNNVKLQSL--PADKKAVVLKFHVLHSYYP 279 (419)
Q Consensus 202 nlt~~L~~~~~fstf~~lL~~t~l~~~l~~~~~~~~~TVFAPTD~AF~~L~~~~~l~~l--~~~~l~~lL~yHvvp~~~~ 279 (419)
+|.++|+.+++|++|.++++++|+.+.|++.+ +||||||||+||++++.+ .++.+ ++++++++|+|||+++.++
T Consensus 3 ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~~---~~TvFAPtn~Af~~l~~~-~~~~l~~~~~~l~~iL~yHvv~~~~~ 78 (132)
T 2vxp_A 3 TVMDVLKGDNRFSMLVAAIQSAGLTETLNREG---VYTVFAPTNEAFRALPPR-ERSRLLGDAKELANILKYHIGDEILV 78 (132)
T ss_dssp CHHHHHTTSTTCHHHHHHHHHHTCHHHHHSSC---CEEEEEECHHHHHHSCHH-HHHHHHTCHHHHHHHHHHSBBSSCCC
T ss_pred cHHHHHHcCCCHHHHHHHHHHcCcHHHHcCCC---CEEEEeECHHHHHhhCHH-HHHHHhcCHHHHHHHHHhcCcCceee
Confidence 78999988999999999999999999998765 999999999999999865 44433 7889999999999999988
Q ss_pred CCcccccCCCccccccccccCCceEEEEEEEeCCEEEEEeCceeeEEEeecccCCCeEEEEeCcccc
Q 044183 280 LGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVLL 346 (419)
Q Consensus 280 ~~~l~~~~~~v~~Tla~~~~~~~~~~l~v~~~g~~V~v~~g~~~a~V~~~~~~~~ngvIh~ID~VL~ 346 (419)
.+++.. ...+ +|+.| + .++|+..++.+.| ++++|+.+|+.+.||+||+||+||+
T Consensus 79 ~~~l~~-~~~~-~tl~G-----~--~l~v~~~~~~v~v----n~a~v~~~di~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 79 SGGIGA-LVRL-KSLQG-----D--KLEVSLKNNVVSV----NKEPVAEPDIMATNGVVHVITNVLQ 132 (132)
T ss_dssp STTCSS-CEEE-EBTTS-----S--EEEEEEETTEEEE----SSCBEEEEEEEETTEEEEEESSCC-
T ss_pred hhhccC-CceE-ecCCC-----C--EEEEEEeCCEEEE----eccEEEEcceecCCEEEEEECcEeC
Confidence 888764 2234 47765 3 5777888888887 3489999999999999999999995
No 4
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.91 E-value=1.7e-25 Score=201.26 Aligned_cols=130 Identities=18% Similarity=0.314 Sum_probs=110.9
Q ss_pred hhhHHHHHhcCCChHHHHHHHH-----hcCchhhhhcCCCCCceEEEeeCcHHHhcCCCCccCCCC--CHHHHHHHhhhc
Q 044183 200 GLNITKALIDGHNFNVAASMLA-----ASGVVEEFEADEGGAGITLFVPTDLAFADLPNNVKLQSL--PADKKAVVLKFH 272 (419)
Q Consensus 200 ~~nlt~~L~~~~~fstf~~lL~-----~t~l~~~l~~~~~~~~~TVFAPTD~AF~~L~~~~~l~~l--~~~~l~~lL~yH 272 (419)
..+|.++|++.++|++|.++|+ ++|+.+.|++. +||||||||+||++++.+ .++.| ++++|+++|+||
T Consensus 27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~----g~TvFAPtn~AF~~l~~~-~~~~L~~~~~~L~~iL~yH 101 (163)
T 1nyo_A 27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSG----QYTVFAPTNAAFSKLPAS-TIDELKTNSSLLTSILTYH 101 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSS----SEEECCBCHHHHHHSCHH-HHHHHTTCSSHHHHHHHHT
T ss_pred CcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCC----CcEEEEECHHHHHhccHH-HHHHHhcCHHHHHHHHHhc
Confidence 3589999988999999999999 99999999764 499999999999999865 44443 567899999999
Q ss_pred cccccccCCcccccCCCccccccccccCCceEEEEEEEeCCEEEEEeCceeeEEEeecccCCCeEEEEeCccccCCC
Q 044183 273 VLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVLLPRE 349 (419)
Q Consensus 273 vvp~~~~~~~l~~~~~~v~~Tla~~~~~~~~~~l~v~~~g~~V~v~~g~~~a~V~~~~~~~~ngvIh~ID~VL~P~~ 349 (419)
|+++.++.++|. +.+ +|+.| . .|+|+..++.|.| ++++|+..|+.+.||+||+||+||+|+.
T Consensus 102 vv~g~~~~~~l~---g~~-~Tl~G-----~--~l~v~~~~~~v~v----n~a~V~~~di~a~NGvIHvID~VL~P~~ 163 (163)
T 1nyo_A 102 VVAGQTSPANVV---GTR-QTLQG-----A--SVTVTGQGNSLKV----GNADVVCGGVSTANATVYMIDSVLMPPA 163 (163)
T ss_dssp EEESCCCTTTSC---EEE-ECTTS-----S--EEEEEECSSCEEE----TTEECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred eECCEEcHHHhC---Ccc-ccCCC-----C--EEEEEEECCEEEE----eccEEEECceEcCCEEEEEECcEeCCCC
Confidence 999999999886 456 58765 3 6778887888887 3489999999999999999999999973
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.84 E-value=2.1e-21 Score=192.34 Aligned_cols=138 Identities=17% Similarity=0.257 Sum_probs=105.0
Q ss_pred hhHHHHHh------cCCChHHHHHHHHhcC--chhhhhcCCCCCceEEEeeCcHHHhcCCCCccCCCCCHHHHHHHhhhc
Q 044183 201 LNITKALI------DGHNFNVAASMLAASG--VVEEFEADEGGAGITLFVPTDLAFADLPNNVKLQSLPADKKAVVLKFH 272 (419)
Q Consensus 201 ~nlt~~L~------~~~~fstf~~lL~~t~--l~~~l~~~~~~~~~TVFAPTD~AF~~L~~~~~l~~l~~~~l~~lL~yH 272 (419)
.||+++|+ +.++|++|.++|+++| +.+.|++.+ +||||||+|+||+++... .+. .+++.++++|+||
T Consensus 6 ~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~~~---~~TvFAPtn~Af~~~~~~-~l~-~~~~~l~~iL~yH 80 (324)
T 1o70_A 6 TTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINSLT---EVTILAPSNEAWNSSNIN-NVL-RDRNKMRQILNMH 80 (324)
T ss_dssp -------------CCHHHHHHHHHHHHHTCSHHHHHHHTCS---SEEEEEECHHHHHHTCTH-HHH-TCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcCCC---CeEEEEEChHhhhcccHh-hhh-CCHHHHHHHHHhc
Confidence 57888886 5789999999999999 999998765 999999999999886422 221 2788999999999
Q ss_pred cccccccCCcccccCC----CccccccccccCCce-EEEEEEEe--CCEEEEEeCceeeEEEeecccCCCeEEEEeCccc
Q 044183 273 VLHSYYPLGSLESIVN----PVQPTLATEDMGAGR-FTLNISRV--NGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVL 345 (419)
Q Consensus 273 vvp~~~~~~~l~~~~~----~v~~Tla~~~~~~~~-~~l~v~~~--g~~V~v~~g~~~a~V~~~~~~~~ngvIh~ID~VL 345 (419)
|++++++.+++....+ .+ +|+.+ +. ..++++.+ ++.+.+++|..+|+|+..++.+.||+||+||+||
T Consensus 81 vv~g~~~~~~l~~~~~~~~~~~-~Tl~g-----~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~VL 154 (324)
T 1o70_A 81 IIKDRLNVDKIRQKNANLIAQV-PTVNN-----NTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVL 154 (324)
T ss_dssp EESSCCCHHHHHHHTSSSCCCE-EBSST-----TCEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCT
T ss_pred EeCCeecHHHHhhccCCCceEE-EcCCC-----CceEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchhh
Confidence 9999999888875432 45 57765 32 55666643 3468888776679999999999999999999999
Q ss_pred cCCC
Q 044183 346 LPRE 349 (419)
Q Consensus 346 ~P~~ 349 (419)
.|+.
T Consensus 155 ~pp~ 158 (324)
T 1o70_A 155 GVPY 158 (324)
T ss_dssp TSCC
T ss_pred hhch
Confidence 9964
No 6
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.79 E-value=3.7e-20 Score=161.45 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=99.0
Q ss_pred CcCHHHHhCcCCChHHHHHHHHccCchhHHHhcCCCCeEEEEeCCcCcCCCCCCccccC----CCHHHHHHHHHhhhhcc
Q 044183 28 ALNITDLLLPYPDLSAFSALISSTSSAVAADLSHRSSITFLAVPNSYLNSPSSLDFTRR----LSPSSLADLLRYHVLLQ 103 (419)
Q Consensus 28 a~nI~~~L~~~~~lS~f~~lL~~~~t~L~~~L~~~~~~TvfAPtN~AF~~l~~~~~~~~----~~~~~L~~lL~yHVl~~ 103 (419)
..||.++|+++++||+|.++|++ +|+.+.|++.++||||||+|+||+++... .... .+++.|+++|+|||+++
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~--agl~~~L~~~~~~TvFAPtn~Af~~l~~~-~~~~l~~~~~~~~l~~lL~yHvv~~ 78 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEA--AGLVDTLKGDGPFTVFAPTDAAFAALPEG-TVEDLLKPENKEKLTEILTYHVVPG 78 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHH--TTTHHHHTSSSCEEEECCCHHHHTTSTTT-HHHHTTSHHHHHHHHHHHHHHEEES
T ss_pred CCCHHHHHHhCCCHHHHHHHHHH--cCCHHHHcCCCCEEEEEECHHHHHHcCHh-HHHHHhCcCCHHHHHHHHHhhEeCc
Confidence 46899999999999999999999 99999999999999999999999976321 1111 26789999999999999
Q ss_pred ccChhcccccCCCCceeeeeecccCCCCCCcceEEEEeCCCCCeEEEeCCCCCCCcceEEEeeeeecccceeEEeecccc
Q 044183 104 YLSWADLRKIPSSGILVTTLFQTTGRASSNFGSVNISRNPATNAIAIHSPAPYSASNATVLTLIKTLPYNITILSINSLL 183 (419)
Q Consensus 104 ~~~~~~L~~l~~~~~l~~Tl~q~tg~~~~~~g~vnit~~~~~g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~Vh~Id~vL 183 (419)
++..++|.. +..++|+- | ..+.|+.. + | +.++. +.+++.. ....||+||.||+||
T Consensus 79 ~~~~~~l~~----~~~~~tl~---G------~~l~v~~~-~-g-v~vn~--------a~v~~~d-i~~~NGvIHvID~VL 133 (137)
T 1w7d_A 79 EVMSSDLTE----GMTAETVE---G------GALTVTLE-G-G-PKVNG--------VSISQPD-VDASNGVIHVIDGVL 133 (137)
T ss_dssp CCCTTTSCS----SEEEECTT---S------CEEEEECT-T-S-CEETT--------EECSBCC-CBCSSSEEEBCSSCC
T ss_pred EEcHHHhcC----CCeeeccC---C------ceEEEEec-C-C-EEEeC--------cEEEECC-eecCCeEEEEECeee
Confidence 998888753 22344431 2 24677664 3 6 77642 3344321 135799999999999
Q ss_pred ccc
Q 044183 184 VPY 186 (419)
Q Consensus 184 ~P~ 186 (419)
+|+
T Consensus 134 ~P~ 136 (137)
T 1w7d_A 134 MPG 136 (137)
T ss_dssp SSC
T ss_pred CCC
Confidence 996
No 7
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.75 E-value=1.3e-18 Score=150.73 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=94.9
Q ss_pred cCHHHHhCcCCChHHHHHHHHccCchhHHHhcCCCCeEEEEeCCcCcCCCCCCc--cccCCCHHHHHHHHHhhhhccccC
Q 044183 29 LNITDLLLPYPDLSAFSALISSTSSAVAADLSHRSSITFLAVPNSYLNSPSSLD--FTRRLSPSSLADLLRYHVLLQYLS 106 (419)
Q Consensus 29 ~nI~~~L~~~~~lS~f~~lL~~~~t~L~~~L~~~~~~TvfAPtN~AF~~l~~~~--~~~~~~~~~L~~lL~yHVl~~~~~ 106 (419)
.||.++|+++++||+|.+++++ +|+.+.|++.++||||||+|+||+++.... ... .+++.|+++|+|||+++.+.
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~--agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~-~~~~~l~~iL~yHvv~~~~~ 78 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQS--AGLTETLNREGVYTVFAPTNEAFRALPPRERSRLL-GDAKELANILKYHIGDEILV 78 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHH--HTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHH-TCHHHHHHHHHHSBBSSCCC
T ss_pred ccHHHHHHcCCCHHHHHHHHHH--cCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHh-cCHHHHHHHHHhcCcCceee
Confidence 5899999999999999999999 999999999999999999999999653111 111 37889999999999999887
Q ss_pred hhcccccCCCCceeeeeecccCCCCCCcceEEEEeCCCCCeEEEeCCCCCCCcceEEEeeeeecccceeEEeeccccc
Q 044183 107 WADLRKIPSSGILVTTLFQTTGRASSNFGSVNISRNPATNAIAIHSPAPYSASNATVLTLIKTLPYNITILSINSLLV 184 (419)
Q Consensus 107 ~~~L~~l~~~~~l~~Tl~q~tg~~~~~~g~vnit~~~~~g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~Vh~Id~vL~ 184 (419)
..++.. ...++|+. | ..+.++.. + +.+.++. +.+++... ...||+||.||+||+
T Consensus 79 ~~~l~~----~~~~~tl~---G------~~l~v~~~-~-~~v~vn~--------a~v~~~di-~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 79 SGGIGA----LVRLKSLQ---G------DKLEVSLK-N-NVVSVNK--------EPVAEPDI-MATNGVVHVITNVLQ 132 (132)
T ss_dssp STTCSS----CEEEEBTT---S------SEEEEEEE-T-TEEEESS--------CBEEEEEE-EETTEEEEEESSCC-
T ss_pred hhhccC----CceEecCC---C------CEEEEEEe-C-CEEEEec--------cEEEEcce-ecCCEEEEEECcEeC
Confidence 776632 23344431 2 24667664 3 6677742 23443211 257999999999984
No 8
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.74 E-value=9.7e-19 Score=157.04 Aligned_cols=129 Identities=23% Similarity=0.262 Sum_probs=97.7
Q ss_pred CcCHHHHhCcCCChHHHHHHHH-----ccCchhHHHhcCCCCeEEEEeCCcCcCCCCCCc--cccCCCHHHHHHHHHhhh
Q 044183 28 ALNITDLLLPYPDLSAFSALIS-----STSSAVAADLSHRSSITFLAVPNSYLNSPSSLD--FTRRLSPSSLADLLRYHV 100 (419)
Q Consensus 28 a~nI~~~L~~~~~lS~f~~lL~-----~~~t~L~~~L~~~~~~TvfAPtN~AF~~l~~~~--~~~~~~~~~L~~lL~yHV 100 (419)
..+|.++|+++++||+|.++|. + ++|.+.|++.+ ||||||+|+||+++.... .+. .+++.|+++|+|||
T Consensus 27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~--agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~-~~~~~L~~iL~yHv 102 (163)
T 1nyo_A 27 QDPVAVAASNNPELTTLTAALSGQLNPQ--VNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELK-TNSSLLTSILTYHV 102 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHHHHHSSSCTT--CCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHT-TCSSHHHHHHHHTE
T ss_pred CcCHHHHHHhCCCHHHHHHHHHhccccc--cCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHh-cCHHHHHHHHHhce
Confidence 4799999999999999999999 8 99999999999 999999999999652100 111 25678999999999
Q ss_pred hccccChhcccccCCCCceeeeeecccCCCCCCcceEEEEeCCCCCeEEEeCCCCCCCcceEEEeeeeecccceeEEeec
Q 044183 101 LLQYLSWADLRKIPSSGILVTTLFQTTGRASSNFGSVNISRNPATNAIAIHSPAPYSASNATVLTLIKTLPYNITILSIN 180 (419)
Q Consensus 101 l~~~~~~~~L~~l~~~~~l~~Tl~q~tg~~~~~~g~vnit~~~~~g~v~~~s~~~g~~~~a~vv~~v~~~~~Ng~Vh~Id 180 (419)
+++++..++|. + .++|+ .| ..++|+... +.+.++. +.|++... ...||+||.||
T Consensus 103 v~g~~~~~~l~----g--~~~Tl---~G------~~l~v~~~~--~~v~vn~--------a~V~~~di-~a~NGvIHvID 156 (163)
T 1nyo_A 103 VAGQTSPANVV----G--TRQTL---QG------ASVTVTGQG--NSLKVGN--------ADVVCGGV-STANATVYMID 156 (163)
T ss_dssp EESCCCTTTSC----E--EEECT---TS------SEEEEEECS--SCEEETT--------EECSSBCC-CCSSEEEBCBS
T ss_pred ECCEEcHHHhC----C--ccccC---CC------CEEEEEEEC--CEEEEec--------cEEEECce-EcCCEEEEEEC
Confidence 99999988874 1 24443 12 247777653 5677742 34443211 35799999999
Q ss_pred cccccc
Q 044183 181 SLLVPY 186 (419)
Q Consensus 181 ~vL~P~ 186 (419)
+||+|+
T Consensus 157 ~VL~P~ 162 (163)
T 1nyo_A 157 SVLMPP 162 (163)
T ss_dssp SCCCCC
T ss_pred cEeCCC
Confidence 999996
No 9
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=15.94 E-value=58 Score=24.14 Aligned_cols=7 Identities=43% Similarity=0.956 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 044183 358 RPPGVSP 364 (419)
Q Consensus 358 ~p~~~~~ 364 (419)
+|||||+
T Consensus 4 ~pp~~a~ 10 (69)
T 2xk0_A 4 APPVAAP 10 (69)
T ss_dssp SCSSSSS
T ss_pred CCCCCCC
Confidence 3444433
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=15.89 E-value=58 Score=24.02 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhhhee
Q 044183 400 WRSYVVAAALCCIGLLYV 417 (419)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~ 417 (419)
.+++++|+++|++|++++
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 347888888888887764
Done!