Your job contains 1 sequence.
>044184
MAALEAAATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTL
QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN
FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVS
NLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE
LMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044184
(275 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 667 1.5e-65 1
TAIR|locus:2122368 - symbol:AT4G09040 species:3702 "Arabi... 411 2.1e-38 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 341 5.4e-31 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 323 4.4e-29 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 280 1.6e-24 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 274 6.8e-24 1
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 270 1.8e-23 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 240 2.7e-20 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 232 7.9e-19 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 233 1.4e-18 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 228 5.1e-18 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 224 1.0e-17 1
POMBASE|SPBC4F6.14 - symbol:SPBC4F6.14 "RNA-binding prote... 225 1.2e-17 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 215 1.2e-17 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 225 1.2e-17 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 225 1.2e-17 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 225 1.2e-17 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 224 1.3e-17 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 224 1.4e-17 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 214 1.6e-17 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 223 1.6e-17 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 223 1.7e-17 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 223 1.7e-17 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 223 1.8e-17 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 223 2.1e-17 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 221 2.6e-17 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 218 3.3e-17 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 220 3.7e-17 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 215 3.9e-17 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 215 3.9e-17 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 219 4.4e-17 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 219 4.6e-17 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 219 4.6e-17 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 219 4.8e-17 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 214 8.3e-17 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 207 8.6e-17 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 216 9.6e-17 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 216 9.7e-17 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 215 1.1e-16 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 215 1.1e-16 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 215 1.2e-16 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 215 1.3e-16 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 215 1.3e-16 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 215 1.3e-16 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 215 1.3e-16 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 215 1.3e-16 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 215 1.3e-16 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 214 1.3e-16 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 214 1.6e-16 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 214 1.6e-16 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 212 2.6e-16 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 211 2.9e-16 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 211 3.3e-16 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 211 3.6e-16 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 210 4.2e-16 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 210 4.3e-16 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 210 4.3e-16 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 209 5.5e-16 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 209 6.1e-16 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 206 6.5e-16 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 208 7.1e-16 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 202 2.3e-15 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 203 2.4e-15 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 203 2.4e-15 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 199 1.5e-14 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 197 1.6e-14 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 200 1.6e-14 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 185 1.8e-14 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 185 1.8e-14 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 198 1.9e-14 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 198 2.9e-14 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 199 3.3e-14 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 199 3.4e-14 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 195 5.0e-14 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 197 7.0e-14 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 195 7.8e-14 1
UNIPROTKB|G4MVB4 - symbol:MGG_01746 "Uncharacterized prot... 126 8.1e-14 2
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 198 9.6e-14 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 178 1.0e-13 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 196 1.1e-13 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 196 1.2e-13 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 193 1.3e-13 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 194 1.5e-13 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 195 1.5e-13 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 195 1.9e-13 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 190 2.0e-13 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 191 2.0e-13 1
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 196 2.3e-13 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 190 2.4e-13 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 191 2.6e-13 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 191 2.6e-13 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 191 2.6e-13 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 190 2.8e-13 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 190 4.1e-13 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 189 4.9e-13 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 186 5.1e-13 1
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 194 5.2e-13 1
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 152 6.6e-13 2
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 184 8.3e-13 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 188 8.4e-13 1
WARNING: Descriptions of 1035 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 153/292 (52%), Positives = 194/292 (66%)
Query: 1 MAALEAAATSI-FLTNHPFSFSCLFPKLPHCIKLLHSSNSTPS-LSYNFP-------TRN 51
MA LEA+ + F ++ S LF K +KL S PS LS F +R
Sbjct: 1 MAVLEASLSIFSFSSSSSSSKPYLFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRR 60
Query: 52 LCLQVCSTLQ-------DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT 104
L +CS + +T+ E K E+TQ N++RKL+VFNLPWS SV +I LF CGT
Sbjct: 61 LVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGT 120
Query: 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
V +VEII+ K GKNR FAFVTMAS EEAQAA+++FDT +VSGRII V FA++FKKP P+
Sbjct: 121 VNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKS 180
Query: 165 SASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSA-NFNPVSSKVVFESNEGRSAGYGF 220
P+ +T+HKLYVSNL+WK RSTHLRE F+A +FNPVS++VVF EGRS+GYGF
Sbjct: 181 PNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGF 240
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNK--EEEDVSED 270
VSFAT+EEAE AI+ L+GKE+MGRP+ LKF ++ SE E + SED
Sbjct: 241 VSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASED 292
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 96/275 (34%), Positives = 157/275 (57%)
Query: 10 SIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETK- 68
++ TNH S S P L C LH + P S +RNL +T Q+ +E+
Sbjct: 26 NVAFTNHSLSLST--PSL--C--RLHRHATFPD-SIPAKSRNLTSYFSTTTQEPVLESSS 78
Query: 69 -----PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAF 123
PE +++ + +L N+PW+ + +I++LF G+V+D+E+ HK +NR F
Sbjct: 79 SSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVF 138
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
+ MASPEEA A+ ++ E GR ++V++AK KK + P+ L+V+NL+
Sbjct: 139 IEMASPEEAATALKSLESCEYEGRRLKVDYAKT-KKKKTYAPRETPSPVPTFNLFVANLA 197
Query: 184 WKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
++ R+ HL+EFF A+ N VS++V+F N RS+GYGFVSF TK++AEAA+ GK+ +
Sbjct: 198 FEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFL 257
Query: 243 GRPLRLKFGQK--NDDVSESNKEEEDVSEDQSAES 275
GRP+RL ++ E + E+ +E++ ++S
Sbjct: 258 GRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQS 292
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 75/219 (34%), Positives = 127/219 (57%)
Query: 65 VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAF 123
VE + + TQ +LYV NLP++ + +E+ +F GTVVDV+I+ K ++R F F
Sbjct: 102 VEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK-----KFKKPRPQ-RSASAPARETQHKL 177
VTM S EEA+ A+ F++ ++ GR ++V F + + + R + R + ++ HK+
Sbjct: 162 VTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
Y NL W + S L++ F + +KV++E N GRS G+GF+SF + E ++A+++++
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281
Query: 238 GKELMGRPLRLKFGQKNDDVSESNKE-EEDVSEDQSAES 275
G E+ GR LRL + + + S EE +E+ S ES
Sbjct: 282 GVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLES 320
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 91/254 (35%), Positives = 131/254 (51%)
Query: 21 SCLFPKLPHCIKLLH----SSNSTPSLSYNFPTRNLCL---QVCST---LQDTTVETKPE 70
SC K H LLH SSN T L +NF T L + CS + T+ K E
Sbjct: 9 SCF--KSHHQPNLLHGCNYSSNQT-LLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLE 65
Query: 71 QTQKQN-----------IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKN 118
+ +K + + KLY NLP++ A + + VE++ ++ G++
Sbjct: 66 EEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQS 125
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
R FAFVTM++ E+ ++ D E GR ++V FA K P+P + P ET+HKL+
Sbjct: 126 RGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK---PKPNKEPLYP--ETEHKLF 180
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V NLSW V S L F + V ++VVF+ + GRS GYGFV +++K E E A+ SLDG
Sbjct: 181 VGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG 240
Query: 239 KELMGRPLRLKFGQ 252
EL GR +R+ Q
Sbjct: 241 FELEGRAIRVNLAQ 254
Score = 139 (54.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 33/110 (30%), Positives = 52/110 (47%)
Query: 147 RIIRVEFAKKFKKPRPQRSASA---PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS 203
R++ K ++ ASA P KLY NL + V S L + NP
Sbjct: 54 RVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPEL 113
Query: 204 SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+V++ + G+S G+ FV+ + E+ I +LDG E +GR L++ F K
Sbjct: 114 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK 163
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 64/176 (36%), Positives = 102/176 (57%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 211 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 63/175 (36%), Positives = 99/175 (56%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ + LF GTV E+I ++ ++R F FVTM++ EEA+ AV +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F++ EV+GR + V A + RP+R + ++YV NL W V S L FS +
Sbjct: 174 FNSFEVNGRRLTVNRAAP-RGSRPERQPRV--YDAAFRIYVGNLPWDVDSGRLERLFSEH 230
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V ++VV + GRS G+GFV + + E AI++LDG+ L GR +++ ++
Sbjct: 231 GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEE 285
Score = 118 (46.6 bits), Expect = 0.00010, P = 0.00010
Identities = 42/168 (25%), Positives = 78/168 (46%)
Query: 83 VFNLPWSFSVAEIKNL---FAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+F +P F+++ ++ F+ V++ + +K K +N + VT S A +
Sbjct: 23 LFCIPSIFNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSS-PVVTFVSQTSNWAEEEE 81
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ + G + V+ + F+ + P + KL+V NL + V S L F
Sbjct: 82 GEDGSIGGTSVTVD--ESFES---EDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQA 136
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
S+V++ + +S G+GFV+ +T EEAE A+ + E+ GR L
Sbjct: 137 GTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRL 184
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 67/202 (33%), Positives = 114/202 (56%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH--KGGKNRNF 121
+V +K E +K +LYV N+P S+ +A++ ++F P GTV+ VE++ + G++R
Sbjct: 94 SVVSKAEPVKKPR-PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGS 152
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK---KPRPQRSASAPAR----ETQ 174
+VTM S A+ A+ D EV GR +RV ++ + P+ S P + E+Q
Sbjct: 153 GYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQ 212
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
HK+YV NL W + LR FS VS++V+ + GR+ + F+SF + EE +AA+S
Sbjct: 213 HKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 272
Query: 235 SLDGKELMGRPLRLKFG-QKND 255
+G + GR + ++ G +K++
Sbjct: 273 -FNGTQYEGRRIIVREGIEKSE 293
Score = 111 (44.1 bits), Expect = 0.00068, P = 0.00068
Identities = 40/162 (24%), Positives = 75/162 (46%)
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS--GRIIRVEFAKKFKKPRPQR- 164
+E +K + + +F +++ P AQ + + E+S E K +P
Sbjct: 36 LESLKLQFSSSNSFHHSSLSRPFVAQPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSV 95
Query: 165 -SASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE-GRSAGYGFV 221
S + P ++ + +LYV N+ L + F +S +VV + + G S G G+V
Sbjct: 96 VSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYV 155
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
+ + A+ AI+SLDG E+ GR +R+++ + + N E
Sbjct: 156 TMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPE 197
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 78/250 (31%), Positives = 123/250 (49%)
Query: 12 FLTN----HP--FSF-SCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTT 64
FLTN P FSF S F L H + SS PSL+ F + + + +T
Sbjct: 4 FLTNVVSIKPTIFSFQSESFTPL-HTRVNVFSSKPFPSLAGTFSRSSRTRFIPYAVTET- 61
Query: 65 VETKPEQTQKQN-IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFA 122
E KP + R++Y+ N+P + + ++ L G V V+++ K G++R F
Sbjct: 62 -EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFG 120
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ----RSASAPARETQHKLY 178
F TM S E+A A V + + V GR I+V +K P +S + ++ +K+Y
Sbjct: 121 FATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVY 180
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V NL+ V L FS VS+KV +S G+GFV+F+++E+ EAAI +L+
Sbjct: 181 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
Query: 239 KELMGRPLRL 248
L G+ +R+
Sbjct: 241 SLLEGQKIRV 250
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 232 (86.7 bits), Expect = 7.9e-19, P = 7.9e-19
Identities = 56/186 (30%), Positives = 103/186 (55%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D+ +
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNN 245
Query: 259 ESNKEE 264
+N ++
Sbjct: 246 NNNYQQ 251
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 233 (87.1 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 67/214 (31%), Positives = 109/214 (50%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E+K E+ K N +YV N+ ++S + LF+P G + + + K + GK++ F FV
Sbjct: 222 ESKFEE-MKANFTN-IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVN 279
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ---RSASAPARETQHK-----L 177
E A AV + + +E++G+ I V A+K K+ R + + A E K L
Sbjct: 280 FEDHESAVKAVEELNDKEINGQKIYVGRAQK-KRERLEELKKQYEAVRLEKLAKYQGVNL 338
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
+V NL + S L E F F ++S V G+S G+GFV F T EEA AI+ ++
Sbjct: 339 FVKNLDDTIDSEKLEEEFKP-FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMN 397
Query: 238 GKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQ 271
+ + G+PL + Q+ D V S E++ + +Q
Sbjct: 398 TRMINGKPLYVALAQRKD-VRRSQLEQQIQARNQ 430
Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 59/228 (25%), Positives = 101/228 (44%)
Query: 39 STPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNL 98
S L+ T +T D + E + E + LYV L S + A + +
Sbjct: 12 SMEKLNIGSTTEEQSAAAATTTADQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEI 71
Query: 99 FAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+P G V + + + K+ +A+V E+ + A+ + + + GR R+ ++++
Sbjct: 72 FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQR- 130
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
P +RS +++ NL + + L + FSA F + S V G+S
Sbjct: 131 -DPSARRSGDG-------NIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATDEFGQSKC 181
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVSESNKEE 264
+GFV + T E AEAAI +++G L R + + K K D ES EE
Sbjct: 182 FGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKD--RESKFEE 227
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 228 (85.3 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 61/197 (30%), Positives = 99/197 (50%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+T KQ +YV N ++ ++ LFA G + E++ +G K++ F FV A+PE
Sbjct: 207 ETAKQFTN--VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG-KSKGFGFVAFANPE 263
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYV 179
EA+ AV + G +++ + KK +R A + QHK LYV
Sbjct: 264 EAETAVQALHDSTIEGTDLKLHVCRAQKKS--ERHAELKKKHEQHKAERMQKYQGVNLYV 321
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NL V L++ F + N S+KV+ + N GRS G+GFV F EEA +A++ ++ K
Sbjct: 322 KNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSK 380
Query: 240 ELMGRPLRLKFGQKNDD 256
+ +PL + Q+ +D
Sbjct: 381 MVCSKPLYVAIAQRKED 397
Score = 165 (63.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 50/202 (24%), Positives = 102/202 (50%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASP 129
QT LYV +L + + + F+ G V+ + + + + + +A+V P
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+A+ A++ + + + G+ +R+ ++++ P +RS + +++ NL + +
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQR--DPAMRRSGAG-------NIFIKNLDKVIDNK 134
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL- 248
+ + FS N +S KV + +G S GYGFV F T+E A+ AI ++G L G+ + +
Sbjct: 135 SIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG 193
Query: 249 KF---GQKNDDVSESNKEEEDV 267
KF Q+N ++ E+ K+ +V
Sbjct: 194 KFQPRAQRNRELGETAKQFTNV 215
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 224 (83.9 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 57/198 (28%), Positives = 101/198 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 80 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 139
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG+II +VE + K+ Q +R LY
Sbjct: 140 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 199
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 200 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 257
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 258 RIVGSKPLYVALAQRKEE 275
Score = 187 (70.9 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 49/193 (25%), Positives = 101/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 61
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 62 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 117
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 118 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 176
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 177 ELKRKFEQLKQER 189
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 225 (84.3 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 56/206 (27%), Positives = 103/206 (50%)
Query: 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQA 134
N L+V NL + ++ N F+ G + ++ + + G+NR + FVT + E+AQ
Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-----QHKLYVSNLSWKVRST 189
A + +++ GRI+R++FA K+ + ++T + +L + NL W ++
Sbjct: 62 AAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKP 121
Query: 190 -HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
HL FS F V + GR G+ FV ++ AE A++SL+G E+ GRP+ +
Sbjct: 122 QHLEPHFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Query: 249 KFGQKNDDVSESNKEEEDVSEDQSAE 274
+ D E+ ++ SE+++ E
Sbjct: 181 DWAVSKD-AFEATTLKDASSEEENKE 205
Score = 131 (51.2 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 36/121 (29%), Positives = 63/121 (52%)
Query: 62 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAE-IKNLFAPCGTVVDVEIIKHKGGKNRN 120
DT ++T +Q+ R +L + NLPWS + ++ F+ G V +++I GG+
Sbjct: 90 DTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCG 149
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVS 180
FAFV M + A+ A+N + E+ GR I V++A K + + E ++K +VS
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVS-KDAFEATTLKDASSEEENKEFVS 208
Query: 181 N 181
+
Sbjct: 209 D 209
Score = 64 (27.6 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 204 SKVVFE-SNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+KV E + GRS G+GF+ F + + A A+ L+G+E+
Sbjct: 526 AKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREI 564
Score = 58 (25.5 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAE 230
++V NL ++ L F F P++ +K+V + RS G GF+ F +++ +
Sbjct: 279 VFVRNLLFECTEQELYNHFR-QFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQ 332
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 252 QKNDDVSESNKEEEDVSEDQSAE 274
Q+++D + + E DV ++++ E
Sbjct: 631 QEDEDNLKRKRSESDVEDNEAKE 653
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 85
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 86 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 145
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 146 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 203
Query: 254 NDD 256
++
Sbjct: 204 KEE 206
Score = 153 (58.9 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 37/121 (30%), Positives = 62/121 (51%)
Query: 153 FAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN 211
F +FK R +R A AR + +Y+ N + L++ F F P S V
Sbjct: 2 FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDE 59
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSED 270
G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +E ++ E + +D
Sbjct: 60 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 119
Query: 271 Q 271
+
Sbjct: 120 R 120
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 225 (84.3 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 54/181 (29%), Positives = 100/181 (55%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+ + E+KN+F ++V ++ +K G ++ A++ +
Sbjct: 360 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTE 416
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EA+ A+ + EV GR + +++ + + Q+ RE++ L V+NLS+
Sbjct: 417 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE--RESK-TLIVNNLSYAASEE 473
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E F S K+ ++N+GR GY FV F T E+A+ A++S + E+ GR +RL+
Sbjct: 474 TLQELFK---KATSIKMP-QNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLE 529
Query: 250 F 250
F
Sbjct: 530 F 530
Score = 202 (76.2 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 54/194 (27%), Positives = 101/194 (52%)
Query: 62 DTTVETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN 118
D T E +++QK R+ L V NL ++ S ++ LF +++ ++ G+
Sbjct: 439 DYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRP 495
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
+ +AFV + E+A+ A+N + E+ GR IR+EF+ + + +A + L+
Sbjct: 496 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQ-KGNMNARGGFNQQSKTLF 554
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V LS LRE F + +S+++V + + G S G+GFV F++ E+A+AA +++
Sbjct: 555 VRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMED 611
Query: 239 KELMGRPLRLKFGQ 252
E+ G + L F +
Sbjct: 612 GEIDGNKVTLDFAK 625
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 46/187 (24%), Positives = 90/187 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL + E++ ++++ + + G ++ F +V S E+ A+ Q +
Sbjct: 281 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLN 339
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+++ G I++E AK K+ + AR L+V NL ++V ++ F N
Sbjct: 340 GKKLMGLEIKLEKAKS-KESLKENKKERDART----LFVKNLPYRVTEDEMKNVFE---N 391
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSE 259
+ ++V + EG S G ++ F T+ EAE A+ G E+ GR + + + G+K+ S+
Sbjct: 392 ALEVRLVL-NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 450
Query: 260 SNKEEED 266
E +
Sbjct: 451 KGGGERE 457
Score = 115 (45.5 bits), Expect = 0.00091, P = 0.00091
Identities = 37/141 (26%), Positives = 69/141 (48%)
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS----WK 185
E+ + + ++ +E G+ + E A K ++ A + L+V NL+ ++
Sbjct: 235 EDEEESEDEKPVKEAPGKR-KKEMANKSAPEAKKKKTEIKAPASAFSLFVKNLTPTKDYE 293
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
T ++EFF VS E G S +G+V F + E+ + A+ L+GK+LMG
Sbjct: 294 ELRTAIKEFFGKKNLQVS-----EVRIGSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLE 347
Query: 246 LRLKFGQKNDDVSESNKEEED 266
++L+ + + + E NK+E D
Sbjct: 348 IKLEKAKSKESLKE-NKKERD 367
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 225 (84.3 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 54/181 (29%), Positives = 100/181 (55%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+ + E+KN+F ++V ++ +K G ++ A++ +
Sbjct: 362 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTE 418
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EA+ A+ + EV GR + +++ + + Q+ RE++ L V+NLS+
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE--RESK-TLIVNNLSYAASEE 475
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E F S K+ ++N+GR GY FV F T E+A+ A++S + E+ GR +RL+
Sbjct: 476 TLQELFK---KATSIKMP-QNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLE 531
Query: 250 F 250
F
Sbjct: 532 F 532
Score = 202 (76.2 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 54/194 (27%), Positives = 101/194 (52%)
Query: 62 DTTVETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN 118
D T E +++QK R+ L V NL ++ S ++ LF +++ ++ G+
Sbjct: 441 DYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRP 497
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
+ +AFV + E+A+ A+N + E+ GR IR+EF+ + + +A + L+
Sbjct: 498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQ-KGNMNARGGFNQQSKTLF 556
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V LS LRE F + +S+++V + + G S G+GFV F++ E+A+AA +++
Sbjct: 557 VRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMED 613
Query: 239 KELMGRPLRLKFGQ 252
E+ G + L F +
Sbjct: 614 GEIDGNKVTLDFAK 627
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 49/202 (24%), Positives = 96/202 (47%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E K ++T+ L+V NL + E++ ++++ + + G ++ F +V
Sbjct: 268 EAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVD 327
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
S E+ A+ Q + +++ G I++E AK K+ + AR L+V NL ++
Sbjct: 328 FLSAEDMDKAL-QLNGKKLMGLEIKLEKAKS-KESLKENKKERDART----LFVKNLPYR 381
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V ++ F N + ++V + EG S G ++ F T+ EAE A+ G E+ GR
Sbjct: 382 VTEDEMKNVFE---NALEVRLVL-NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRA 437
Query: 246 LRLKF-GQKNDDVSESNKEEED 266
+ + + G+K+ S+ E +
Sbjct: 438 MVIDYTGEKSQQESQKGGGERE 459
Score = 116 (45.9 bits), Expect = 0.00070, P = 0.00070
Identities = 38/141 (26%), Positives = 70/141 (49%)
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS----WK 185
E+ + + ++ +E G+ + E A K ++ PA + L+V NL+ ++
Sbjct: 239 EDEEESEDEKPVKEAPGKR-KKEMANKSAPEAKKKKTETPA--SAFSLFVKNLTPTKDYE 295
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
T ++EFF VS E G S +G+V F + E+ + A+ L+GK+LMG
Sbjct: 296 ELRTAIKEFFGKKNLQVS-----EVRIGSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLE 349
Query: 246 LRLKFGQKNDDVSESNKEEED 266
++L+ + + + E NK+E D
Sbjct: 350 IKLEKAKSKESLKE-NKKERD 369
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 225 (84.3 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 54/181 (29%), Positives = 100/181 (55%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+ + E+KN+F ++V ++ +K G ++ A++ +
Sbjct: 362 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTE 418
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EA+ A+ + EV GR + +++ + + Q+ RE++ L V+NLS+
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE--RESK-TLIVNNLSYAASEE 475
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E F S K+ ++N+GR GY FV F T E+A+ A++S + E+ GR +RL+
Sbjct: 476 TLQELFK---KATSIKMP-QNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLE 531
Query: 250 F 250
F
Sbjct: 532 F 532
Score = 202 (76.2 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 54/194 (27%), Positives = 101/194 (52%)
Query: 62 DTTVETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN 118
D T E +++QK R+ L V NL ++ S ++ LF +++ ++ G+
Sbjct: 441 DYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRP 497
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
+ +AFV + E+A+ A+N + E+ GR IR+EF+ + + +A + L+
Sbjct: 498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQ-KGNMNARGGFNQQSKTLF 556
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V LS LRE F + +S+++V + + G S G+GFV F++ E+A+AA +++
Sbjct: 557 VRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMED 613
Query: 239 KELMGRPLRLKFGQ 252
E+ G + L F +
Sbjct: 614 GEIDGNKVTLDFAK 627
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 49/202 (24%), Positives = 96/202 (47%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E K ++T+ L+V NL + E++ ++++ + + G ++ F +V
Sbjct: 268 EAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVD 327
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
S E+ A+ Q + +++ G I++E AK K+ + AR L+V NL ++
Sbjct: 328 FLSAEDMDKAL-QLNGKKLMGLEIKLEKAKS-KESLKENKKERDART----LFVKNLPYR 381
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V ++ F N + ++V + EG S G ++ F T+ EAE A+ G E+ GR
Sbjct: 382 VTEDEMKNVFE---NALEVRLVL-NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRA 437
Query: 246 LRLKF-GQKNDDVSESNKEEED 266
+ + + G+K+ S+ E +
Sbjct: 438 MVIDYTGEKSQQESQKGGGERE 459
Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
Identities = 38/141 (26%), Positives = 70/141 (49%)
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS----WK 185
E+ + + ++ +E G+ + E A K ++ PA + L+V NL+ ++
Sbjct: 239 EDEEESEDEKPVKEAPGKR-KKEMANKSAPEAKKKKTETPA--SAFSLFVKNLTPTKDYE 295
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
T ++EFF VS E G S +G+V F + E+ + A+ L+GK+LMG
Sbjct: 296 ELRTAIKEFFGKKNLQVS-----EVRIGSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLE 349
Query: 246 LRLKFGQKNDDVSESNKEEED 266
++L+ + + + E NK+E D
Sbjct: 350 IKLEKAKSKESLKE-NKKERD 369
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 57/198 (28%), Positives = 101/198 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG+II +VE + K+ Q +R LY
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 187 (70.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/193 (25%), Positives = 101/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQLKQER 287
Score = 155 (59.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 48/181 (26%), Positives = 92/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T+E A+ AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 224 (83.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 57/198 (28%), Positives = 101/198 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG+II +VE + K+ Q +R LY
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 187 (70.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 49/193 (25%), Positives = 101/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQLKQER 287
Score = 155 (59.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 48/181 (26%), Positives = 92/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T+E A+ AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 53/149 (35%), Positives = 82/149 (55%)
Query: 116 GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA----KK---FKK-PRPQRSAS 167
G++R F FVTM+S E +AA QF+ E+ GR +RV K+ F + PR +S
Sbjct: 129 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSS 188
Query: 168 APA--------RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
+ +++YV NLSW V L FS V ++V+++ + GRS G+G
Sbjct: 189 GSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFG 248
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRL 248
FV++ + +E + AI SLDG +L GR +R+
Sbjct: 249 FVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
Score = 169 (64.5 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 51/147 (34%), Positives = 72/147 (48%)
Query: 12 FLTNHPFSFSCLFPKLPHCIKLLHSSNS-TPSLSYNFPTRNLCLQVCSTLQ-----DTTV 65
F + P S S L P L KL S S + + +N P V T + D
Sbjct: 20 FGVSRPASVSLLSPSLS--FKLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFA 77
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
+ P + Q + KL+V NLP++ A++ LF G V VE+I K G++R F FV
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRV 151
TM+S E +AA QF+ E+ GR +RV
Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRV 164
Score = 147 (56.8 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L + F + N +V+++ GRS G+GFV+ ++ E EAA
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GRPLR+ G
Sbjct: 152 FNGYELDGRPLRVNAG 167
Score = 132 (51.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W +++LF+ G VV+ +I + G+++ F FVT S +E Q A+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ + PR Q
Sbjct: 265 LDGADLDGRQIRVSEAEA-RPPRRQ 288
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 59/183 (32%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 190 (71.9 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 57/193 (29%), Positives = 94/193 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK + +
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRRFEQMKQDR 287
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 40/165 (24%), Positives = 83/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEMLKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + + R G+GFV F T E A+ AI++++G L R
Sbjct: 124 NILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDR 166
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 56/198 (28%), Positives = 101/198 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG++I +VE + K+ Q +R LY
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 186 (70.5 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 48/193 (24%), Positives = 98/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQLKQER 287
Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 48/181 (26%), Positives = 92/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T+E A+ AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 56/198 (28%), Positives = 101/198 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG++I +VE + K+ Q +R LY
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 184 (69.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 48/193 (24%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQLKQER 287
Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 48/181 (26%), Positives = 92/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T+E A+ AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 223 (83.6 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 58/198 (29%), Positives = 101/198 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL + E +LF G + + ++K + K R F FV A+ E AQ AV++ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 141 TQEVSGRIIRVEFA-KKFKKPRPQRSASAPAR-ETQHK-----LYVSNLSWKVRSTHLRE 193
+E G+ + V A KK ++ R + E +K L++ NL +V L+
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F ++S + +G+S G+GFV + T EEA A++ ++ + L G+PL + Q+
Sbjct: 383 EFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441
Query: 254 NDDVSESNKEEEDVSEDQ 271
+ V S E + + +Q
Sbjct: 442 KE-VRRSQLEAQIQARNQ 458
Score = 127 (49.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 43/159 (27%), Positives = 76/159 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + LF G V + + + ++ +A+V + E+ + A+++
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++ QR S T + +++ NL + + L + FSA
Sbjct: 142 NYTLIKGRPCRIMWS--------QRDPSLRKMGTGN-VFIKNLDPAIDNKALHDTFSAFG 192
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+S KV + G + GYGFV F + E A AAI ++G
Sbjct: 193 KILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 33/113 (29%), Positives = 58/113 (51%)
Query: 66 ETKPEQTQK-QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFV 124
+ K E+ K Q + L++ NL +K F+ GT+ +I+ + GK++ F FV
Sbjct: 352 QMKLEKMNKYQGVN--LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFV 409
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+PEEA AV + + + ++G+ + V A++ + R Q A AR Q +L
Sbjct: 410 CYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARN-QFRL 461
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 223 (83.6 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 56/198 (28%), Positives = 101/198 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 218 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 277
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG++I +VE + K+ Q +R LY
Sbjct: 278 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 337
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 338 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 395
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 396 RIVGSKPLYVALAQRKEE 413
Score = 188 (71.2 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 56/243 (23%), Positives = 117/243 (48%)
Query: 31 IKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSF 90
+K+LH++ T + + T N + ++ + P +K + +++ NL S
Sbjct: 95 LKMLHATGGTAERALD--TMNFDVIKGKPIRIMWSQRDPS-LRKSGVGN-VFIKNLDKSI 150
Query: 91 SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150
+ + F+ G ++ +++ + G ++ +AFV + E A A+ + + ++ R +
Sbjct: 151 DNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV- 208
Query: 151 VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE 209
F +FK R +R A A+ + +Y+ N +V L+E FS F S V
Sbjct: 209 --FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QFGKTLSVKVMR 264
Query: 210 SNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVSESNKEEEDVS 268
G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +E ++ E +
Sbjct: 265 DPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 324
Query: 269 EDQ 271
+++
Sbjct: 325 QER 327
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 221 (82.9 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 56/183 (30%), Positives = 100/183 (54%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G V++++ G++R F F+ EEAQ AV+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK-----LYVSNLSWKVRSTHLRE 193
+EVSG+++ V A+K + + + R +E Q++ LYV NL + L+E
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKE 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ ES+ S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 VFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 192 (72.6 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 55/193 (28%), Positives = 101/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G+++ +++ ++ G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR +YV NL + L++ FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD-VS 258
S KV+ +SN G+S G+GF++F EEA+ A+ ++GKE+ G+ L + QK + +
Sbjct: 216 KTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +++
Sbjct: 275 ELKRRFEQMKQER 287
Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + +F+P GT++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++ + P +RS +++ NL + + L + FS
Sbjct: 73 NFEMIKGQPIRIMWSHR--DPGLRRSGMG-------NIFIKNLENSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +SSKVV+ NE S G+GFV F T E A+ AI++++G L R
Sbjct: 124 SILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 218 (81.8 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 58/193 (30%), Positives = 97/193 (50%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
+TK E++ K + L+V NL W+ A + F CGTV +I + G+++ F +V
Sbjct: 229 KTKTEESDKPST---LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYV 285
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE-------TQHKL 177
A+PEEA+ A + + GR I+V+F+ K +A A A++ L
Sbjct: 286 DFATPEEAEKAHGEKQGAFIDGREIKVDFSTG-KATNSNDAAGARAKKYGDTVSPESDTL 344
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
+V NL + + FFS S ++ E GR G+G+V+F + E+A++A L+
Sbjct: 345 FVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLN 404
Query: 238 GKELMGRPLRLKF 250
G+ + GR RL +
Sbjct: 405 GQSINGRNCRLDY 417
Score = 151 (58.2 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 40/127 (31%), Positives = 62/127 (48%)
Query: 158 KKPRPQRSASAPARETQHK-------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
KK + + APA++T+ + L+V NLSW V L E F S++V+ +
Sbjct: 215 KKRKAEEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDR 274
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF--GQKNDDVSESNKEEEDVS 268
GRS G+G+V FAT EEAE A G + GR +++ F G+ + + +
Sbjct: 275 ESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYG 334
Query: 269 EDQSAES 275
+ S ES
Sbjct: 335 DTVSPES 341
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 220 (82.5 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 55/198 (27%), Positives = 101/198 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E++G++I +VE + K+ Q +R LY
Sbjct: 238 YEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 186 (70.5 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 48/193 (24%), Positives = 98/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQLKQER 287
Score = 155 (59.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 48/181 (26%), Positives = 92/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T+E A+ AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 215 (80.7 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 52/189 (27%), Positives = 97/189 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ A +K F G V+ +I + GK+R + +V S A+ A+ +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---TQHK----LYVSNLSWKVRSTHLR 192
+E+ GR I ++ + KP +S + A++ +Q L++ NLS+ +L
Sbjct: 230 QGKEIDGRPINLDMSTG--KPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLF 287
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F N +S +V + + G+G+V F++ +EA+AA+ +++G+ + GRP RL F
Sbjct: 288 NVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFST 347
Query: 253 KNDDVSESN 261
D+ + +N
Sbjct: 348 PRDNTNNNN 356
Score = 178 (67.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 40/137 (29%), Positives = 68/137 (49%)
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
D++E + + E +K+ + ++S A + E L+V LSW + L+ F
Sbjct: 133 DSEEEPSKKRKAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIG 192
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ ++V+ E G+S GYG+V F +K AE A+ + GKE+ GRP+ L S+
Sbjct: 193 GVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASK 252
Query: 260 SNKEE-EDVSEDQSAES 275
SN + + + QS S
Sbjct: 253 SNNDRAKQYGDSQSPPS 269
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 215 (80.7 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 52/189 (27%), Positives = 97/189 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ A +K F G V+ +I + GK+R + +V S A+ A+ +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---TQHK----LYVSNLSWKVRSTHLR 192
+E+ GR I ++ + KP +S + A++ +Q L++ NLS+ +L
Sbjct: 230 QGKEIDGRPINLDMSTG--KPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLF 287
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F N +S +V + + G+G+V F++ +EA+AA+ +++G+ + GRP RL F
Sbjct: 288 NVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFST 347
Query: 253 KNDDVSESN 261
D+ + +N
Sbjct: 348 PRDNTNNNN 356
Score = 178 (67.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 40/137 (29%), Positives = 68/137 (49%)
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
D++E + + E +K+ + ++S A + E L+V LSW + L+ F
Sbjct: 133 DSEEEPSKKRKAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIG 192
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ ++V+ E G+S GYG+V F +K AE A+ + GKE+ GRP+ L S+
Sbjct: 193 GVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASK 252
Query: 260 SNKEE-EDVSEDQSAES 275
SN + + + QS S
Sbjct: 253 SNNDRAKQYGDSQSPPS 269
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 219 (82.2 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 58/183 (31%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 191 (72.3 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 54/193 (27%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E AQ A++ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V + G S G+GFV+F EEA+ A+ +++G+E+ GR L + QK + +
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRRFEQMKQDR 287
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 42/165 (25%), Positives = 84/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + + R G+GFV F T E A+ AIS+++G L R
Sbjct: 124 NILSCKVVCDEHGSR--GFGFVHFETHEAAQNAISTMNGMLLNDR 166
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 219 (82.2 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 61/183 (33%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL S + ++KN F G + ++K GK++ F FV + ++A AV
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 137 -NQFDTQE-VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLRE 193
++FD +E GR + + + R +++ A + Q LYV NL + L+E
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS SSKV+ + N G S G GFV+FAT EEA A+S L GK + +PL + Q+
Sbjct: 337 IFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQR 395
Query: 254 NDD 256
+D
Sbjct: 396 KED 398
Score = 181 (68.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 55/198 (27%), Positives = 104/198 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F GTVV V + + ++ + +V +P++A A+ +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IRV ++ + P +RS + +++ NL + L + FS+
Sbjct: 98 NYIPLYGKPIRVMYSHR--DPSVRRSGAG-------NIFIKNLDESIDHKALHDTFSSFG 148
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N VS KV +S+ G+S GYGFV +A +E A+ AI L+G L + + + F ++ + S
Sbjct: 149 NIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDS 207
Query: 259 ESNKEE-EDVSEDQSAES 275
+NK + +V AES
Sbjct: 208 TANKTKFTNVYVKNLAES 225
Score = 127 (49.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 61 QDTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116
++T + + EQ K+ + LYV NL S S ++K +F+P GTV ++++ G
Sbjct: 296 RETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNG 355
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++ FV A+PEEA A++Q + + + + V A++ K+ R R
Sbjct: 356 TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQR-KEDRRVR 402
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 162 PQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGF 220
P S A A + + LYV +L + V + L + F V+ +V + RS GYG+
Sbjct: 22 PATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGY 81
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
V+F ++A AI L+ L G+P+R+ + ++ V S
Sbjct: 82 VNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 219 (82.2 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 53/183 (28%), Positives = 97/183 (53%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K++F+ G + + ++ + GK+R F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G++I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ + GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 196 (74.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 49/193 (25%), Positives = 102/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
N +S +V+ + N G+S G+GFVSF E+A+ A+ ++GKE+ G+ + + QK + +
Sbjct: 216 NAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 168 (64.2 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 49/181 (27%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 219 (82.2 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 59/183 (32%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ L +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 193 (73.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 56/193 (29%), Positives = 94/193 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G +R F FV + E AQ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFS-RF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V + G S G+GFV+F EEA+ A+ ++GKE+ GR L + QK + S
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQS 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRRFEQLKQDR 287
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 41/165 (24%), Positives = 84/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + + R G+GFV F T E A+ AI++++G L R
Sbjct: 124 NILSCKVVCDDHGSR--GFGFVHFETHEAAQQAITTMNGMLLNDR 166
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 214 (80.4 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 55/183 (30%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 84
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 85 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 144
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 145 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 202
Query: 254 NDD 256
++
Sbjct: 203 KEE 205
Score = 156 (60.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 38/121 (31%), Positives = 62/121 (51%)
Query: 153 FAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN 211
F +FK R +R A AR + +Y+ N + L+E F F P S V
Sbjct: 1 FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-KFGPALSVKVMTDE 58
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSED 270
G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +E ++ E + +D
Sbjct: 59 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 118
Query: 271 Q 271
+
Sbjct: 119 R 119
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF P + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 65 VYIKNFGEDMDDERLKDLFGPA---LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 121
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 122 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 181
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 182 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 239
Query: 254 NDD 256
++
Sbjct: 240 KEE 242
Score = 160 (61.4 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 42/156 (26%), Positives = 78/156 (50%)
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-K 176
++ + FV + E A+ A+ + + ++ R + F +FK R +R A AR +
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTN 64
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+Y+ N + L++ F P S V G+S G+GFVSF E+A+ A+ +
Sbjct: 65 VYIKNFGEDMDDERLKDLFG----PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 237 DGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSEDQ 271
+GKEL G+ + + QK + +E ++ E + +D+
Sbjct: 121 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 156
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 216 (81.1 bits), Expect = 9.6e-17, P = 9.6e-17
Identities = 54/183 (29%), Positives = 93/183 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F+ G + V+++ G++R F FV + EEAQ AV + +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV+GR++ R+E + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 43/165 (26%), Positives = 84/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +S KVV + E S GYGFV F T+E A AI +++G L R
Sbjct: 124 DILSCKVVCD--EYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 216 (81.1 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 197 (74.4 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 63/253 (24%), Positives = 119/253 (47%)
Query: 30 CIKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK----- 80
C L+ S +S + +Y NF T+ ++ KP + +Q+ RK
Sbjct: 43 CRDLITSGSS--NYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + + + G ++ ++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++GR + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNGRKV---FVGQFKS-RKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRTFEQMKQDR 287
Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH--KGGKNRNFAFVTMASPEEAQAAVNQ 138
LYV +L + A + F+P G ++ + I + G + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQHTKDAEHALDT 71
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 72 MNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAF 122
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N G S GYGFV F T E AE AI ++G L GR
Sbjct: 123 GNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 207
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 208 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 267
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 268 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 325
Query: 254 NDD 256
++
Sbjct: 326 KEE 328
Score = 196 (74.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 114
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 115 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 169
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 230 ELKRKFEQMKQDR 242
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 40/144 (27%), Positives = 76/144 (52%)
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
++ +A+V P +A+ A++ + + G+ +R+ ++++ P ++S
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------N 55
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+++ NL + + L + FSA N +S KVV + N G S GYGFV F T+E AE AI +
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKM 113
Query: 237 DGKELMGRPLRL-KFGQKNDDVSE 259
+G L R + + +F + + +E
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAE 137
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 221 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 280
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 281 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 254 NDD 256
++
Sbjct: 339 KEE 341
Score = 172 (65.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 43/156 (27%), Positives = 79/156 (50%)
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-K 176
++ + FV + E A+ A+ + + ++ R + F +FK R +R A AR +
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTN 160
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+Y+ N + L++ F F P S V G+S G+GFVSF E+A+ A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 237 DGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSEDQ 271
+GKEL G+ + + QK + +E ++ E + +D+
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 255
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 215 (80.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 56/183 (30%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV E+AQ AV +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 192 (72.6 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 55/193 (28%), Positives = 96/193 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G +R F FV + E AQ A+ +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELGARALEFTNIYVKNLHVDVDERCLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V + G S G+GFV+F E+A+ A++ ++GKE+ GR L + QK + +
Sbjct: 215 GKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRRFEQMKQDR 287
Score = 142 (55.0 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 41/165 (24%), Positives = 83/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NVFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + + R G+GFV F T E A+ AI +++G L R
Sbjct: 124 NILSCKVVCDDHGSR--GFGFVHFETHEAAQNAIRTMNGMLLNDR 166
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 196 (74.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 196 (74.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 196 (74.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 196 (74.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 196 (74.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 161 (61.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 55/183 (30%), Positives = 95/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 196 (74.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 214 (80.4 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 55/183 (30%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 188
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 189 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 248
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 249 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 306
Query: 254 NDD 256
++
Sbjct: 307 KEE 309
Score = 199 (75.1 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 50/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 95
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 96 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-KF 150
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 211 ELKRKFEQMKQDR 223
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 214 (80.4 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 55/183 (30%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 199 (75.1 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 50/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 214 (80.4 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 55/183 (30%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 199 (75.1 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 50/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 212 (79.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 54/183 (29%), Positives = 94/183 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV+GR+I R+E + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 44/165 (26%), Positives = 84/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + + R GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDR 166
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 211 (79.3 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 55/198 (27%), Positives = 100/198 (50%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N ++ LF+ G + V++++ GK++ F FV+
Sbjct: 107 EREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVS 166
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG+ I +VE + K+ Q +R LY
Sbjct: 167 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 226
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 227 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 285 RIVGSKPLYVALAQRKEE 302
Score = 189 (71.6 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 49/193 (25%), Positives = 102/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 88
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +LRE FS
Sbjct: 89 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 144
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + + G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 145 KTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 203
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 204 ELKRKFEQLKQER 216
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 211 (79.3 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 55/198 (27%), Positives = 100/198 (50%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N ++ LF+ G + V++++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG+ I +VE + K+ Q +R LY
Sbjct: 238 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 189 (71.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 49/193 (25%), Positives = 102/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + + G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 216 KTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQLKQER 287
Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 48/181 (26%), Positives = 91/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T+E A AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 211 (79.3 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 55/198 (27%), Positives = 100/198 (50%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N ++ LF+ G + V++++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + +E+SG+ I +VE + K+ Q +R LY
Sbjct: 238 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 189 (71.6 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 49/193 (25%), Positives = 102/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + + G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK + +
Sbjct: 216 KTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQLKQER 287
Score = 153 (58.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 48/181 (26%), Positives = 91/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T+E A AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 210 (79.0 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 53/183 (28%), Positives = 93/183 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV+GR+I R+E + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 154 (59.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 43/165 (26%), Positives = 84/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + + ++A++ P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + + R GYGFV F T E A AI +++G L R
Sbjct: 124 NILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDR 166
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 56/183 (30%), Positives = 96/183 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + LF G V+ V+++ +GGK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q + R LYV NL + L++
Sbjct: 253 GKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A+S ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 144 (55.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 45/165 (27%), Positives = 84/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + ++ +A V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P +RS +++ NL+ + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRRSGVG-------NVFIKNLNKTIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N G S G+GFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDEN-G-SKGHGFVHFETEEAAERAIEKMNGMLLNDR 166
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 57/198 (28%), Positives = 97/198 (48%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF G + V+++ GK+R F FV+
Sbjct: 179 EREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVS 238
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLY 178
E+A AV + + E++G+ + V A+K K+ Q +R LY
Sbjct: 239 YEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLY 298
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G
Sbjct: 299 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 357 RIVGSKPLYVALAQRKEE 374
Score = 167 (63.8 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 45/193 (23%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 160
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 161 GMLLNDRKV---FVGRFKS-RKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYG 216
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + G+S G+GFVS+ E+A A+ ++G EL G+ + + QK + +
Sbjct: 217 KTLSVKVMTDPT-GKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 276 ELKRKFEQLKQER 288
Score = 154 (59.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 48/188 (25%), Positives = 95/188 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 74 NFDVVKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 124
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T++ A+ AI ++G L R + + +F + + +
Sbjct: 125 NILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Query: 259 ESNKEEED 266
E + ++
Sbjct: 183 EMGAKAKE 190
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 209 (78.6 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 53/198 (26%), Positives = 100/198 (50%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V+++ GK++ F FV+
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVS 237
Query: 126 MASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLY 178
E+A AV + + ++++G+++ +VE + K+ Q +R LY
Sbjct: 238 FEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLY 297
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 239 KELMGRPLRLKFGQKNDD 256
+ + +PL + Q+ ++
Sbjct: 356 RIVGSKPLYVALAQRKEE 373
Score = 173 (66.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 46/193 (23%), Positives = 98/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK + +
Sbjct: 216 KTLSVKVMTDPT-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +++
Sbjct: 275 ELKRRFEQLKQER 287
Score = 151 (58.2 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 47/181 (25%), Positives = 92/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GY FV F T++ A+ AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 209 (78.6 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 59/183 (32%), Positives = 92/183 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ-- 138
+YV NL S S E+ +F G I++ GK++ F FV + ++A AV+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 139 ---FDTQE-VSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLRE 193
FD +E G+ + + K + ++S A ++Q LYV NL V LRE
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V G S G GFV+F+T EEA AI+ ++GK ++ +PL + Q+
Sbjct: 346 HF-APFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Query: 254 NDD 256
+D
Sbjct: 405 KED 407
Score = 177 (67.4 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 56/202 (27%), Positives = 98/202 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ F G VV V + + + + +V A+P++A A+N+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++GR IRV ++ + P ++S +++ NL + L E FSA F
Sbjct: 107 NFMALNGRAIRVMYS--VRDPSLRKSGVG-------NIFIKNLDKSIDHKALHETFSA-F 156
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG-----KELMGRPL--RLKFGQ 252
P+ S V G+S GYGFV + T E A+ AI L+G K++ P +L+
Sbjct: 157 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP 216
Query: 253 KNDDVSESNKEEEDVSEDQSAE 274
+ V +N +++SE S E
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDE 238
Score = 163 (62.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 46/195 (23%), Positives = 92/195 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ ++ G+++ + FV + E AQ A+++ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F K QR S + + +YV NLS + L + F F
Sbjct: 195 GMLLNDKQVYVGPFVHKL-----QRDPSGEKVKFTN-VYVKNLSESLSDEELNKVFG-EF 247
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+S V+ EG+S G+GFV+F ++A A+ +L+GK + + QK +
Sbjct: 248 GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERET 307
Query: 260 SNKEEEDVSEDQSAE 274
K++ + S ++A+
Sbjct: 308 ELKQKFEQSLKEAAD 322
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 29/96 (30%), Positives = 53/96 (55%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+A+ A++ LYV +L V + L E F+ VS +V + RS GYG+V++A
Sbjct: 35 AAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYA 94
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
T ++A A++ L+ L GR +R+ + ++ + +S
Sbjct: 95 TPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKS 130
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 206 (77.6 bits), Expect = 6.5e-16, P = 6.5e-16
Identities = 61/200 (30%), Positives = 100/200 (50%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
T +T + +R LYV L + ++ +F G V +V+II K K N+ FV
Sbjct: 73 TFTRRTAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEY 132
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--LYVSNLSW 184
P A A+ + + V IRV +A Q + SA +T + ++V +LS
Sbjct: 133 DDPGAADRAMQTLNGRRVHQSEIRVNWAY-------QAATSATKEDTSNHFHIFVGDLSN 185
Query: 185 KVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+V L + FS F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L
Sbjct: 186 EVNDEVLTQAFSV-FGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGS 244
Query: 244 RPLRLKFGQKNDDVSESNKE 263
R +R + + S + ++
Sbjct: 245 RAIRCNWANQKGQPSIAQQQ 264
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 55/202 (27%), Positives = 101/202 (50%)
Query: 66 ETKPEQTQKQNIRRK----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
+++ E+ + R K +Y+ N ++K +F G + + ++ GK++ F
Sbjct: 174 KSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGF 233
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQ 174
FV+ E+AQ AV++ + +E++G+ + V A+K K+ Q R
Sbjct: 234 GFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQG 293
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
LYV NL + LR+ FS S+KV+ E GRS G+GFV F++ EEA A++
Sbjct: 294 VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351
Query: 235 SLDGKELMGRPLRLKFGQKNDD 256
++G+ + +PL + Q+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKEE 373
Score = 191 (72.3 bits), Expect = 7.6e-13, P = 7.6e-13
Identities = 48/193 (24%), Positives = 98/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF-CKY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD-VS 258
P S V + G+S G+GFVSF E+A+ A+ ++GKE+ G+ + + QK + +
Sbjct: 215 GPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 163 (62.4 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 49/181 (27%), Positives = 92/181 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 202 (76.2 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 55/182 (30%), Positives = 96/182 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN--- 137
+YV NL + + + LF+ GTV V +++ G++R F FV +PE A+ A+
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 138 --QFDTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
Q ++++ G+ ++ + ++ K + + A LYV NLS + T LRE
Sbjct: 264 GLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREI 323
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F VS+KV+ N GRS G+GFV F+ EE++ A L+G + G+P+ ++ ++
Sbjct: 324 FGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382
Query: 255 DD 256
+D
Sbjct: 383 ED 384
Score = 197 (74.4 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 56/184 (30%), Positives = 97/184 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S + + ++ +F P G+++ ++++ + G+++ F FV + + A +A +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVE-ENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
V G+ + F KF + +R+A A +++ + +YV NL V L FS +
Sbjct: 173 GSMVYGKKL---FVAKFIN-KDERAAMAGNQDSTN-VYVKNLIETVTDDCLHTLFS-QYG 226
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
VSS VV GRS G+GFV+F E A+ A+ SL G +L + L + K D+ E
Sbjct: 227 TVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286
Query: 261 NKEE 264
K++
Sbjct: 287 LKQK 290
Score = 160 (61.4 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 52/186 (27%), Positives = 99/186 (53%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + ++ + F+ VV V + ++ GK+ +A++ SP A A+ +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ G+ +R+ ++++ R +R+ + A LYV NL + S+ L F
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYR-RRTRTGFAN-----LYVKNLDSSITSSCLERMFCPFG 136
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
+ +S KVV E N G+S G+GFV F T++ A +A S+L G + G+ L + KF K++ +
Sbjct: 137 SILSCKVV-EEN-GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
Query: 259 ESNKEE 264
+ ++
Sbjct: 195 MAGNQD 200
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 203 (76.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 51/183 (27%), Positives = 92/183 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G+++ F FV EEAQ AV +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR++ R+E + K+ Q +R LYV NL + LR+
Sbjct: 253 GKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 189 (71.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 53/193 (27%), Positives = 98/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R FV + E A A+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +Y+ N + LRE FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + + GRS G+GFV+F EEA+ A++ ++GKE+ GR + + QK + S
Sbjct: 216 KTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQS 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQMKQER 287
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 43/165 (26%), Positives = 84/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPVRIMWSQR--DPGLRKSGVG-------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N R G+GFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVVCDENGSR--GHGFVHFETQEAATRAIQTMNGMLLNDR 166
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 203 (76.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 52/183 (28%), Positives = 92/183 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K F G + V+++ GK+R F FV+ E+AQ AV+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ I +VE + K+ Q R LYV NL + LR+
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ + S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 188 (71.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 48/193 (24%), Positives = 102/193 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E+F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + + G+S G+GFVSF E+A+ A+ ++GK+L G+ + + QK + +
Sbjct: 216 AALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 199 (75.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 57/190 (30%), Positives = 96/190 (50%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R L+V NL + + + LF G V+ +II G N +AFV + +A A+
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE--GLNDPYAFVEFSDHNQATLALQS 97
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ + + V +A F+ P + S P ++V +L ++ ST LRE F
Sbjct: 98 HNGRELLEKEMHVTWA--FEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAF-VK 154
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG-QKNDD 256
F VS +K++ ++N + GYGFVS+ +E+AE AI ++G L R +R + +K D+
Sbjct: 155 FGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDE 214
Query: 257 VSESNKEEED 266
E + D
Sbjct: 215 DGERGGDRGD 224
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 197 (74.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 63/253 (24%), Positives = 119/253 (47%)
Query: 30 CIKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK----- 80
C L+ S +S + +Y NF T+ ++ KP + +Q+ RK
Sbjct: 43 CRDLITSGSS--NYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + + + G ++ ++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++GR + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNGRKV---FVGQFKS-RKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRTFEQMKQDR 287
Score = 182 (69.1 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 50/156 (32%), Positives = 79/156 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
FS S+KV+ E GRS G+GFV F++ EEA
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Score = 155 (59.6 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH--KGGKNRNFAFVTMASPEEAQAAVNQ 138
LYV +L + A + F+P G ++ + I + G + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQHTKDAEHALDT 71
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 72 MNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAF 122
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N G S GYGFV F T E AE AI ++G L GR
Sbjct: 123 GNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 200 (75.5 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 54/183 (29%), Positives = 89/183 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP E++ F G + +++ + G +R F FV E A +AV + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 141 TQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHK------LYVSNLSWKVRSTHLRE 193
+ ++ V A KK ++ R R + + LY+ NL V L+E
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS N SSKV+ +G S G+GFV+++ EEA A+S ++GK + +PL + Q+
Sbjct: 351 MFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQR 409
Query: 254 NDD 256
+D
Sbjct: 410 KED 412
Score = 168 (64.2 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 49/198 (24%), Positives = 97/198 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ GT++ ++ G+++ + FV E AQAA+++ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F ++ ++ R + + + P R T +YV NL ++ LR+ F F
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPT-P-RFTN--VYVKNLPKEIGEDELRKTFG-KF 252
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+SS VV G S +GFV+F E A +A+ ++G L L + QK + E
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 260 SNK---EEEDVSEDQSAE 274
+ E+E ++ + ++
Sbjct: 313 ELRRKFEQERINRFEKSQ 330
Score = 156 (60.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 49/191 (25%), Positives = 88/191 (46%)
Query: 48 PTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
PT +QV ++ + +QT + LY +L + A + +LF VV
Sbjct: 21 PTAQTSVQVPVSIPLPSPVVVADQTHPNS---SLYAGDLDPKVTEAHLFDLFKHVANVVS 77
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
V + + + ++ +A++ ++P +A A+ + + R IR+ + + P + S
Sbjct: 78 VRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR--DPSTRLSGK 135
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+++ NL + + L E FS+ +S KV + GRS GYGFV F +E
Sbjct: 136 G-------NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEKEE 187
Query: 228 EAEAAISSLDG 238
A+AAI L+G
Sbjct: 188 SAQAAIDKLNG 198
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 160 PRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
P P A LY +L KV HL + F N VS +V + N RS GY
Sbjct: 34 PLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYA 92
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNK 262
+++F+ +A A+ +L+ L RP+R+ ++ S K
Sbjct: 93 YINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGK 135
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 52/180 (28%), Positives = 92/180 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V N+ ++K LF G V++I+ GK++ F FV + E AQ AV
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 96
Query: 141 TQEVSGRIIRVEFA-KKFKK-----PRPQR-SASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ + G+++ V A KK ++ R +R +R +Y+ NL + L+E
Sbjct: 97 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 156
Query: 194 FFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
FS+ F +S +KV+ E +G+ G+G V F++ EEA A+ ++G+ + +PL + GQ
Sbjct: 157 EFSS-FGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 213
Score = 128 (50.1 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/106 (31%), Positives = 52/106 (49%)
Query: 150 RVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVV 207
R + +FK P +R+A R+ T ++V N+ + L+E F + P S V
Sbjct: 9 RQVYVGRFKFPE-ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKV 66
Query: 208 FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
G+S G+GFV + T E A+ A+ L GK + G+ L + QK
Sbjct: 67 IRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 112
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/198 (28%), Positives = 98/198 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREF 194
+ +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 126 F-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 254 NDDVSESNKEEEDVSEDQ 271
+S E + E++
Sbjct: 185 KPPAPKSTYECRCIGEEK 202
Score = 126 (49.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 40/150 (26%), Positives = 67/150 (44%)
Query: 15 NHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQK 74
N P+ F F + H L + N + N S +DT+ T TQ+
Sbjct: 45 NDPYCF-VEFHEHRHAAAALAAMNGRKIMGKEVKV-NWATTPSSQKKDTSSSTVVS-TQR 101
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQ 133
++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ 163
A+ Q Q + GR IR +A + K P P+
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATR-KPPAPK 190
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 198 (74.8 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 61/191 (31%), Positives = 92/191 (48%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
Q K + +YV NL + + A++K LF G + ++K GK+R F FV E
Sbjct: 111 QWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAE 170
Query: 131 EAQAAVNQF-----DTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNL 182
A A+ + D +E+ GR R + K + + +T+ LYV NL
Sbjct: 171 AAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNL 230
Query: 183 SWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
V +T L E FS F ++S KV+ SN G S G GFV F+T EEA A+ ++GK +
Sbjct: 231 DDSVDNTKLEELFS-EFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMV 288
Query: 242 MGRPLRLKFGQ 252
+P+ + Q
Sbjct: 289 GNKPIYVSLAQ 299
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 47/200 (23%), Positives = 90/200 (45%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
+ + + + R ++V NL S ++ ++F+ G V+ ++ + G ++ + FV S
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSD 81
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
A N F +G +IR + P R +R + +YV NL
Sbjct: 82 LSVYTACN-FH----NGTLIRNQHIHVC--PFVSRGQWDKSRVFTN-VYVKNLVETATDA 133
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+ F F ++S VV + EG+S +GFV+F E A AI ++G + + L +
Sbjct: 134 DLKRLFG-EFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVG 192
Query: 250 FGQKNDDVSESNKEEEDVSE 269
Q+ + +E K + ++ +
Sbjct: 193 RAQRKTNRTEDLKAKFELEK 212
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 198 (74.8 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 57/189 (30%), Positives = 95/189 (50%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G V+ V+II K K N+ FV P A+ A
Sbjct: 89 KRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERA 148
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + + IRV +A + +A+ ++V +LS +V L + F
Sbjct: 149 MQTLNGRRIHQSEIRVNWAYQ------SNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAF 202
Query: 196 SANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
SA F VS ++V+++ GRS GYGFV+F + +AE A++S+DG+ L R +R + +
Sbjct: 203 SA-FGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQK 261
Query: 255 DDVSESNKE 263
S S ++
Sbjct: 262 GQPSISQQQ 270
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 199 (75.1 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 50/183 (27%), Positives = 93/183 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +K +F G + V+++ GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ + +VE + K+ Q R LYV NL + LR+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 193 (73.0 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 47/193 (24%), Positives = 99/193 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-KY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V + G+S G+GFVSF E+A+ A+ ++GK++ G+ + + QK + +
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 167 (63.8 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 49/181 (27%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 199 (75.1 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 61/235 (25%), Positives = 110/235 (46%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK---- 80
I++ + SL Y NF + T+ ++ KP + +Q+ RK
Sbjct: 40 IRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V NL S + + F+ G ++ +++ + G ++ + FV + EEA+ A+ +
Sbjct: 100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSAN 198
+ ++ R + F +FK R R A AR + +Y+ NL + L++ FS
Sbjct: 159 NGMFLNDRKV---FVGRFKSRR-DRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFS-R 213
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F P S V G+S G+GFVSF E+A A+ ++GK+L G+ + + QK
Sbjct: 214 FGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQK 268
Score = 193 (73.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 54/193 (27%), Positives = 100/193 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL +++LF+ G + V+++ + GK++ F FV+ E+A+ AV++ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKF---KKPRPQRSASAPARETQHK---LYVSNLS 183
++++G+ I V E KF K+ +P+ R + + LYV NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLD 312
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ LR+ FS S+KV E GRS G+GFV F++ EEA A++ ++G+ +
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 370
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ ++
Sbjct: 371 KPLYVALAQRKEE 383
Score = 170 (64.9 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 52/181 (28%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + + +A V E+A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + S L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+EEAE AI ++G L R + + +F + D +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 195 (73.7 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 52/201 (25%), Positives = 104/201 (51%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ N+ Y+ N +K++F+ G + V+++ GK++
Sbjct: 176 KDREAELRSKASEFTNV----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 231
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPARETQH--- 175
F FV+ S E A+ AV + + ++++G++I V A+K ++ ++ RE
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 176 --KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
KLY+ NL + LR FS+ F +S V + EG+S G+G + F++ E+A A+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSS-FGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAM 349
Query: 234 SSLDGKELMGRPLRLKFGQKN 254
+ ++G+ L +PL + Q++
Sbjct: 350 TEMNGRILGSKPLSIALAQRH 370
Score = 157 (60.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 43/174 (24%), Positives = 90/174 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 158
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G +V F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 159 GKLLKG--CKV-FVGRFKN-RKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 215 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Score = 129 (50.5 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 47/181 (25%), Positives = 85/181 (46%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA F
Sbjct: 72 NFDIIKGKSIRLMWS--------QRDAYL-RRSGIGNVFIKNLDKSIDNKTLYEHFSA-F 121
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
+ S V ++G S GY FV F + A+ AI ++GK L G + + +F + D +
Sbjct: 122 GKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA 180
Query: 259 E 259
E
Sbjct: 181 E 181
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 197 (74.4 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 58/197 (29%), Positives = 95/197 (48%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K ++ + + LY+ NL S ++ FA G +V + I K + R +AFV
Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFD 249
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQH------KLYV 179
+PE+A+ A + + + + V A+K K R Q R E Q +YV
Sbjct: 250 NPEDARRAAETVNGTKFGSKCLYVGRAQK-KAEREQLLREQFKEKHEEQKMIAKVSNIYV 308
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
N++ V LR+ FS S+K++ + +G+S G+GFV F+T EEA A+ + G+
Sbjct: 309 KNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQ 367
Query: 240 ELMGRPLRLKFGQKNDD 256
G+PL + QK +D
Sbjct: 368 MFHGKPLYVAIAQKKED 384
Score = 175 (66.7 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 52/193 (26%), Positives = 94/193 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NLP S + A ++++F G +V ++ + GK+R + FV + A AA+ +
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V+ + I V +F KK + +P+ E LY+ NL V LRE F A F
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPE--------EKYTNLYMKNLDADVSEDLLREKF-AEF 224
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S + + GY FV+F E+A A +++G + + L + QK + +
Sbjct: 225 GKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQ 284
Query: 260 SNKEE-EDVSEDQ 271
+E+ ++ E+Q
Sbjct: 285 LLREQFKEKHEEQ 297
Score = 153 (58.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 54/204 (26%), Positives = 97/204 (47%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAA 135
+ LYV +L S + + + FA ++ V + K G++ + + S ++A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + ++G++IRV ++ + P +R+ ++V NL V + L++ F
Sbjct: 82 IEKKNNSLLNGKMIRVMWS--VRAPDARRNGVG-------NVFVKNLPESVTNAVLQDMF 132
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKN 254
N VS KV +G+S GYGFV F ++ A AAI +L+ + + + + KF +K
Sbjct: 133 KKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKT 191
Query: 255 DDVSESNKE--------EEDVSED 270
D V K + DVSED
Sbjct: 192 DRVKPEEKYTNLYMKNLDADVSED 215
Score = 123 (48.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 31/102 (30%), Positives = 54/102 (52%)
Query: 60 LQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR 119
L++ E EQ + +YV N+ + + E++ F+ CGT+ +++ + GK++
Sbjct: 286 LREQFKEKHEEQKMIAKVSN-IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK 344
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR 161
F FV ++PEEA AV F Q G+ + V A+K K+ R
Sbjct: 345 GFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQK-KEDR 385
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 195 (73.7 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 52/201 (25%), Positives = 104/201 (51%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ N+ Y+ N +K++F+ G + V+++ GK++
Sbjct: 234 KDREAELRSKASEFTNV----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 289
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPARETQH--- 175
F FV+ S E A+ AV + + ++++G++I V A+K ++ ++ RE
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 176 --KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
KLY+ NL + LR FS+ F +S V + EG+S G+G + F++ E+A A+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSS-FGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAM 407
Query: 234 SSLDGKELMGRPLRLKFGQKN 254
+ ++G+ L +PL + Q++
Sbjct: 408 TEMNGRILGSKPLSIALAQRH 428
Score = 157 (60.3 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 43/174 (24%), Positives = 90/174 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G +V F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 217 GKLLKG--CKV-FVGRFKN-RKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 272
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 273 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Score = 130 (50.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 52/210 (24%), Positives = 98/210 (46%)
Query: 57 CSTLQDTTVETKPEQTQKQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII 111
CS +++ +T + ++ N+ K LYV +L + + F+ G V+ + I
Sbjct: 43 CS--KNSRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRIC 100
Query: 112 KHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
+ + ++ +A+V +AQ A++ + + G+ IR+ ++ QR A
Sbjct: 101 RDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWS--------QRDAYL-R 151
Query: 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230
R +++ NL + + L E FSA F + S V ++G S GY FV F + A+
Sbjct: 152 RSGIGNVFIKNLDKSIDNKTLYEHFSA-FGKILSSKVMSDDQG-SKGYAFVHFQNQSAAD 209
Query: 231 AAISSLDGKELMGRPLRL-KFGQKNDDVSE 259
AI ++GK L G + + +F + D +E
Sbjct: 210 RAIEEMNGKLLKGCKVFVGRFKNRKDREAE 239
>UNIPROTKB|G4MVB4 [details] [associations]
symbol:MGG_01746 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0043581 EMBL:CM001232 RefSeq:XP_003714743.1
ProteinModelPortal:G4MVB4 EnsemblFungi:MGG_01746T0 GeneID:2679184
KEGG:mgr:MGG_01746 Uniprot:G4MVB4
Length = 379
Score = 126 (49.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 35/133 (26%), Positives = 70/133 (52%)
Query: 158 KKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES----- 210
++PR +R PA ++ K+ V+NL + + L+E F+A + PVS+K+
Sbjct: 216 REPRERRERGPPADGIASKTKVMVANLPYDMTEARLKEVFAA-YEPVSAKIALRPIPRFM 274
Query: 211 -------NEGRSA-GYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNK 262
NE R G+GFV+ A++E + A++ ++GK++ R + +K + +K
Sbjct: 275 IKKLQARNEPRKGRGFGFVTLASEELQQKAVTEMNGKQIDSREIAVKVA-----IDSPDK 329
Query: 263 EEEDVSEDQSAES 275
++DV+++ A +
Sbjct: 330 TDDDVAQEGEAST 342
Score = 119 (46.9 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 35/131 (26%), Positives = 68/131 (51%)
Query: 46 NFPTRNLCL-QVCSTLQDTTVETKPEQTQKQNIR------RKLYVFNLPWSFSVAEIKNL 98
N PT + + V +TL DT++ K + + R+LY+ NL ++ S ++
Sbjct: 7 NVPTTDAAVTDVAATLADTSISGKADTKANDDNHASAVEGRRLYIGNLAYATSEGKLTEF 66
Query: 99 FAPCGTVVD-VEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G +V+ + I K+ + + +AFV +++P EA+ A+ + QEV R + V+ A+K
Sbjct: 67 FK--GYLVERISIPKNPRTDRPVGYAFVDLSTPNEAERAIAELSGQEVLERKVSVQLARK 124
Query: 157 FKKPRPQRSAS 167
+ +P+ +
Sbjct: 125 PEPTQPKEEGA 135
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 198 (74.8 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 56/195 (28%), Positives = 99/195 (50%)
Query: 66 ETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK--HKGGK--NRN 120
E + E+ +++++ L++ NL + + ++K +F+ GTV I K +K G +
Sbjct: 716 EEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMG 775
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHKLY 178
F FV PE+AQ A+ Q V G + V +++ KP R P ++T K+
Sbjct: 776 FGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKIL 835
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFE--SNEGRSAGYGFVSFATKEEAEAAISSL 236
V N+ ++ S +RE FS F + + + + + G G+GFV F TK++A+ A ++L
Sbjct: 836 VRNIPFQAHSREIRELFST-FGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Query: 237 -DGKELMGRPLRLKF 250
L GR L L++
Sbjct: 895 CHSTHLYGRRLVLEW 909
Score = 132 (51.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 34/93 (36%), Positives = 44/93 (47%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+L V NLP + LFA GT+ D + K GK R F F+ S EEAQ A F
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE 172
+ + I VEF K F P R+ S A++
Sbjct: 63 NKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQK 95
Score = 88 (36.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR---SAGYGFVSFATKEEAEAAI 233
L++ NL++ L+E FS S + + N+ S G+GFV + E+A+ A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 234 SSLDGKELMGRPLRLKFGQK 253
L G + G L ++ ++
Sbjct: 792 KQLQGHVVDGHKLEVRISER 811
Score = 84 (34.6 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 36/136 (26%), Positives = 61/136 (44%)
Query: 154 AKKFKKPRPQRSASAPARE----TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE 209
A K + P + PA + T H + + + V ++ EF A PV+ ++V
Sbjct: 269 AGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFL-APLKPVAIRIVRN 327
Query: 210 SNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN--------DDVSES- 260
++ G GY FV F+ +EE + A+ +E MG F +KN + ++S
Sbjct: 328 AH-GNKTGYIFVDFSNEEEVKQALKC--NREYMGGRYIEVFREKNVPTTKGAPKNTTKSW 384
Query: 261 -------NKEEEDVSE 269
N+EEED++E
Sbjct: 385 QGRILGENEEEEDLAE 400
Score = 48 (22.0 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
P S + F+S+ G+ + +EEA + KEL LK S S
Sbjct: 165 PASDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQKELSDMDY-LKSKMVKAGSSSS 223
Query: 261 NKEEEDVSEDQS 272
++EEE SED++
Sbjct: 224 SEEEE--SEDEA 233
Score = 40 (19.1 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 252 QKNDDVSESNKEEEDVSEDQSAES 275
++ D S + EEE+ E++ ES
Sbjct: 703 EEGADNSSAKMEEEEEEEEEEEES 726
Score = 37 (18.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 251 GQKNDDVSESNKEEEDVSEDQS 272
G N +EEE+ E++S
Sbjct: 705 GADNSSAKMEEEEEEEEEEEES 726
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/195 (26%), Positives = 95/195 (48%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 7 NGPTCNNTANGPTTINNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 65
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 66 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 117
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 118 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 225 TKEEAEAAISSLDGK 239
+ EAE AI L+G+
Sbjct: 175 KRIEAEEAIKGLNGQ 189
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 196 (74.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 49/193 (25%), Positives = 97/193 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 167 (63.8 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 47/151 (31%), Positives = 75/151 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
FS S+KV+ E GRS G+GFV F+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFS 341
Score = 162 (62.1 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N G S GYGFV F T+E AE AI ++G L R + + +F + + +
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 259 E 259
E
Sbjct: 182 E 182
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 196 (74.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 50/183 (27%), Positives = 93/183 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++KN+F G + V ++ + G++R F FV + +A+ AV + +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR++ V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ S+KV+ + G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 160 (61.4 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 45/165 (27%), Positives = 86/165 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A++ P +A+ A++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ N+ + + L + FSA
Sbjct: 73 NYEVIKGRPIRIMWSQR--DPGLRKSGVG-------NIFIKNMDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N G S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAANRAIETMNGMLLNDR 166
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 193 (73.0 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 60/210 (28%), Positives = 103/210 (49%)
Query: 46 NFPTRNLCLQVCSTLQ-DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT 104
N PT N +T+ + VE+ + K N L V LP + + E+K+LF G
Sbjct: 36 NGPTCNNTANCPNTINCSSPVESNNTEDSKTN----LIVNYLPQNMTQEELKSLFGSIGE 91
Query: 105 VVDVEIIKHK--GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP 162
+ ++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 92 IESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP 145
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+
Sbjct: 146 ---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 200
Query: 223 FATKEEAEAAISSLDGKELMG--RPLRLKF 250
F + EAE AI L+G++ G P+ +KF
Sbjct: 201 FDKRIEAEEAIKGLNGQKPPGATEPITVKF 230
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 194 (73.4 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 53/197 (26%), Positives = 98/197 (49%)
Query: 59 TLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN 118
T +D + + TQ++ R++YV NL + E+K G V++ EI+ G +
Sbjct: 60 TERDPHLGNGQKYTQQE---RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLS 116
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV----EFAKKFKKPRPQRSASAPARETQ 174
+ A + ++ EEA+ A+ Q+ GR++ + E +F SAS+ ++++
Sbjct: 117 KGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSE 176
Query: 175 --HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
+L+V NL + VR L++ F + + + + + EGRS G G V ++ +EA A
Sbjct: 177 PDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQM-NQEGRSRGIGIVVMSSMKEAMHA 235
Query: 233 ISSLDGKELMGRPLRLK 249
I L + MGR L ++
Sbjct: 236 IQMLHNTDFMGRTLEVR 252
Score = 123 (48.4 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+YV NL W +L + F+ + + +++ +E GRS G+G V F + +A ++I L
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPT-GRSKGFGVVQFENENDAASSIEKL 370
Query: 237 DGKELMGRPLRLKF 250
+G GRPL+L +
Sbjct: 371 NGYRYGGRPLQLSY 384
Score = 119 (46.9 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R+L+V NLP++ ++K+LF G+V+ +I ++ G++R V M+S +EA A+
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQM 238
Query: 139 FDTQEVSGRIIRVE---FAKKFKKP 160
+ GR + V FA KP
Sbjct: 239 LHNTDFMGRTLEVRLDRFAHHKSKP 263
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 195 (73.7 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 59/198 (29%), Positives = 92/198 (46%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV N+ + + + LFA G +V + K GK + F FV E+A AV +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
E++G + V A+K KK A+ L+V NL V L E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A + ++S V + G+S G+GFV F+T EEA AI+ + + + G+PL + Q+
Sbjct: 341 EF-APYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 254 NDDVSESNKEEEDVSEDQ 271
D V S ++ + +Q
Sbjct: 400 KD-VRRSQLAQQIQARNQ 416
Score = 170 (64.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVT 125
T E +N LYV +L S S A + ++F+P G+V + + + K +A+V
Sbjct: 26 TGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
E + A+ Q + + GR+ R+ ++++ P ++ S +++ NL
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQR--DPSLRKKGSG-------NIFIKNLHPD 136
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ + L + FS + +SSK+ + N G+S G+GFV F + A+ AI +L+G L G+
Sbjct: 137 IDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 195
Query: 246 L 246
+
Sbjct: 196 I 196
Score = 161 (61.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 44/176 (25%), Positives = 84/176 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + F+ G ++ +I + GK++ F FV A+ A++ +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++G+ I V +K R + A T LYV N++ + +E F A F
Sbjct: 188 GMLLNGQEIYVA-PHLSRKERDSQLEETKAHYTN--LYVKNINSETTDEQFQELF-AKFG 243
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
P+ S + + +G+ G+GFV++ E+A A+ +L+ EL G L + QK ++
Sbjct: 244 PIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 195 (73.7 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 55/183 (30%), Positives = 88/183 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN--- 137
+YV NL + + E+K F G++ +++ GK+R F FV +PE+A AV
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 138 --QFDTQE--VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+FD +E V + E + + Q S+ + LYV NL V LRE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V G S G GFV+F+ EA ++ ++GK + G+PL + Q+
Sbjct: 347 LF-AEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 254 NDD 256
++
Sbjct: 406 KEE 408
Score = 165 (63.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 51/184 (27%), Positives = 96/184 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F VV V + + + + +V ++ ++A+ A+ +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G++IR+ ++ R +SA R L+V NL V + L E FS
Sbjct: 108 NYSYLNGKMIRITYSS--------RDSSA-RRSGVGNLFVKNLDKSVDNKTLHEAFSGCG 158
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
VS KV + + G+S GYGFV F T++ A+ AI L+GK L + + + F +K + S
Sbjct: 159 TIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 217
Query: 259 ESNK 262
++K
Sbjct: 218 AADK 221
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 190 (71.9 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 57/193 (29%), Positives = 94/193 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK + +
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRRFEQMKQDR 287
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 40/123 (32%), Positives = 60/123 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFS 196
FS
Sbjct: 313 EFS 315
Score = 140 (54.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 40/165 (24%), Positives = 83/165 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEMLKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + + R G+GFV F T E A+ AI++++G L R
Sbjct: 124 NILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDR 166
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 191 (72.3 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 58/220 (26%), Positives = 108/220 (49%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 7 NGPTCNNTANGPTTINNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 65
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 66 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 117
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 118 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 225 TKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+ EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 212
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 196 (74.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 56/195 (28%), Positives = 97/195 (49%)
Query: 66 ETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK--HKGGK--NRN 120
E + E+ ++++I L++ NL +S + +K +F+ G + I K +K G +
Sbjct: 708 EEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMG 767
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR--PQRSASAPARETQHKLY 178
F FV PE+AQ A+ Q V G + V +++ KP R P ++T K+
Sbjct: 768 FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKIL 827
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA--GYGFVSFATKEEAEAAISSL 236
V N+ ++ +RE FS F + + + + G A G+GFV F TK++A+ A ++L
Sbjct: 828 VRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
Query: 237 -DGKELMGRPLRLKF 250
L GR L L++
Sbjct: 887 CHSTHLYGRRLVLEW 901
Score = 145 (56.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 36/94 (38%), Positives = 47/94 (50%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+L V NLP + LFA GT+ D + K GK R F F+ S EEAQAA+N F
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHF 62
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET 173
+ I VEF K F P R+ S A+++
Sbjct: 63 HRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKS 96
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 52/190 (27%), Positives = 86/190 (45%)
Query: 90 FSVAEIKNLF---APCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG 146
F+V E KN+ AP V + I+++ G + FV ++S EE + A+ + + + G
Sbjct: 302 FNVTE-KNVIEFLAPLKPVA-IRIVRNAHGNKTGYVFVDLSSEEEVKKAL-KCNRDYMGG 358
Query: 147 RIIRVEFAKKFKKPRPQRSASAPAR-----ETQH--------KLYVSNLSWKVRSTHLRE 193
R I V K+ R ++ P + E + +L+V NLS+ L +
Sbjct: 359 RYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEK 418
Query: 194 FFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR-LKFG 251
FSA + P+S +S + G+ FV+F E A A + +DG+ GR L L
Sbjct: 419 LFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
Query: 252 QKNDDVSESN 261
K + E+N
Sbjct: 478 IKKEASQEAN 487
Score = 103 (41.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 31/98 (31%), Positives = 48/98 (48%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NL ++ S +++ LF+ G + ++ I K + FAFVT PE A A +
Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
D Q GR++ V KK Q A+AP + K
Sbjct: 461 VDGQVFQGRMLHV-LPSTIKKEASQE-ANAPGSSYKKK 496
Score = 82 (33.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 22/99 (22%), Positives = 47/99 (47%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR---SAGYGFVSFATKEEAEAAI 233
L++ NL++ L+ FS S + + N+ S G+GFV + E+A+ A+
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783
Query: 234 SSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQS 272
L G + G L ++ ++ + ++ ++ V + Q+
Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQT 822
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAE 274
K + +S +D L + +R + +++D E + E+E V+ ++ +E
Sbjct: 201 KAAVQKELSDMD--YLKSKMVRAEVSSEDED--EEDSEDEAVNCEEGSE 245
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 190 (71.9 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 58/220 (26%), Positives = 108/220 (49%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 7 NGPTCNNTANGPTTVNNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 65
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 66 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 117
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 118 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 225 TKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+ EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 212
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 191 (72.3 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 58/220 (26%), Positives = 108/220 (49%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 35 NGPTCNNTANGPTTINNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 93
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 94 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 145
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 146 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 202
Query: 225 TKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+ EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 203 KRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 240
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 191 (72.3 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 58/220 (26%), Positives = 108/220 (49%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 36 NGPTCNNTANGPTTINNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 94
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 95 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 146
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 147 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 203
Query: 225 TKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+ EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 204 KRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 241
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 191 (72.3 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 58/220 (26%), Positives = 108/220 (49%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 36 NGPTCNNTANGPTTINNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 94
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 95 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 146
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 147 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 203
Query: 225 TKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+ EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 204 KRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 241
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 190 (71.9 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 58/220 (26%), Positives = 108/220 (49%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 7 NGPTCNNTANGPTTVNNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 65
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
++++ K G++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 66 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 117
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 118 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 225 TKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+ EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 212
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 190 (71.9 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 61/194 (31%), Positives = 98/194 (50%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + I LF G+V ++I G N +AFV + +A A+
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQALQT 103
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ + + R ++V +A + P Q+S R H ++V +LS +V + LRE F
Sbjct: 104 MNKRLLLDREMKVNWAVE---PGQQQSKIDTTRHF-H-VFVGDLSSEVDNQKLREAFQP- 157
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F VS +KV+ ++N +S GYGFVS+ +EEAE AI ++G+ L R +R + +
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGD 217
Query: 258 SESNKEEEDVSEDQ 271
E + S D+
Sbjct: 218 QEKPSHYNEKSYDE 231
Score = 151 (58.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 50/198 (25%), Positives = 95/198 (47%)
Query: 70 EQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTM 126
+Q K + R +VF +L +++ F P G V D ++I+ K++ + FV+
Sbjct: 124 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 183
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFA--KKFKKPRP----QRSASAPARETQH---KL 177
EEA+ A+ Q + Q + R IR +A K + +P ++S +T +
Sbjct: 184 PKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSV 243
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV N++ + +R+ F A+F ++ +F+ GY FV F K+ A AI ++
Sbjct: 244 YVGNIA-SLTEDEIRQGF-ASFGRITEVRIFKMQ-----GYAFVKFDNKDAAAKAIVQMN 296
Query: 238 GKELMGRPLRLKFGQKND 255
+++ G+ +R +G+ D
Sbjct: 297 NQDVGGQLVRCSWGKTGD 314
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 189 (71.6 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 53/191 (27%), Positives = 97/191 (50%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQ 133
++ + L V LP S + E+K+LF G + ++++ K G++ + FV P++A+
Sbjct: 63 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 122
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A+N + + + I+V +A RP +SA R+ LYVS L + L +
Sbjct: 123 KAINTLNGLRLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMTQKELEQ 171
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE--LMGRPLRLKFG 251
FS ++S+++ + G S G GF+ F + EAE AI L+G++ P+ +KF
Sbjct: 172 LFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFA 231
Query: 252 QKNDDVSESNK 262
N+ ++N+
Sbjct: 232 --NNPSQKTNQ 240
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 186 (70.5 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 52/163 (31%), Positives = 82/163 (50%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
K+Y+ NL S + + F+ G +++ + K + G +R + FV S E A+AA+ +
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSAN 198
+ + + + V KF PR R + T K LYV NLS + HLRE F
Sbjct: 174 NGMLCNNQKVHVV---KFI-PRRDREQE---KATHFKNLYVKNLSEEFTEQHLREMFEPY 226
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
S K++ + EGRS +GFV++ + A AA+ L GK+L
Sbjct: 227 GRITSHKLMLDE-EGRSRRFGFVAYENPQSALAAVIGLHGKQL 268
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 194 (73.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 56/195 (28%), Positives = 98/195 (50%)
Query: 66 ETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK--HKGGK--NRN 120
E + E+ +++++ L++ NL +S + +K +F+ G V I K +K G +
Sbjct: 721 EEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMG 780
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHKLY 178
F FV PE+AQ A+ Q V G + V +++ KP P R ++T K+
Sbjct: 781 FGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKIL 840
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFE--SNEGRSAGYGFVSFATKEEAEAAISSL 236
V N+ ++ S +RE FS F + + + + + G G+GFV F TK++A+ A ++L
Sbjct: 841 VRNIPFQADSREIRELFST-FGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Query: 237 -DGKELMGRPLRLKF 250
L GR L L++
Sbjct: 900 CHSTHLYGRRLVLEW 914
Score = 139 (54.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 36/98 (36%), Positives = 48/98 (48%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+L V NLP + LF GT+ D + K GK R F F+ S EEAQ A+N F
Sbjct: 3 RLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHF 62
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE-TQHK 176
+ + I VEF K F P R+ S A++ +Q K
Sbjct: 63 NKSFIDTSRITVEFCKSFGDPTKPRAWSKHAQKPSQSK 100
Score = 135 (52.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 57/234 (24%), Positives = 102/234 (43%)
Query: 65 VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFV 124
V KP ++ + + P++ + + AP V + I+++ G + FV
Sbjct: 281 VTEKPAHQREPTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYVFV 339
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK--KPRPQRSASAPARET--QH----- 175
+S EE + A+ Q + + + GR I V K K P+ S A T +H
Sbjct: 340 DFSSEEEVKKAL-QCNREYMGGRYIEVFREKSIPTAKAPPKNSTKAWQGRTLGEHEEEED 398
Query: 176 -----KLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEA 229
+L+V NL + L + FS + P+S +S + G+ FV+F E A
Sbjct: 399 LADSGRLFVRNLPYTSSEEDLEKLFS-KYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 457
Query: 230 EAAISSLDGKELMGRPLRL------KFGQKNDDV--SESNKEEEDVSEDQSAES 275
A + +DG+ GR L + K ++ D S S K++++ S+D+++ S
Sbjct: 458 VKAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTPGSSSYKKKKE-SKDKASSS 510
Score = 83 (34.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 22/99 (22%), Positives = 46/99 (46%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR---SAGYGFVSFATKEEAEAAI 233
L++ NL++ L+ FS S + + N+ S G+GFV + E+A+ A+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 234 SSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQS 272
L G + G L ++ ++ + + ++ V+ Q+
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQT 835
Score = 38 (18.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 256 DVSESNKEEEDVSEDQSAES 275
D + + EEE+ E++ ES
Sbjct: 712 DAASAKVEEEEEEEEEEEES 731
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 152 (58.6 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 31/117 (26%), Positives = 62/117 (52%)
Query: 160 PRPQRSAS-APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGY 218
P+P SA P E ++Y+ +++W V +R FS +S ++ ++ G+ G+
Sbjct: 754 PKPNESAPPVPINEAS-RIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGF 812
Query: 219 GFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
GFV F K+ A+ AI++++G EL+GR + K G+ + +N ++ + + +
Sbjct: 813 GFVDFELKKSADDAIATMNGFELLGRSI--KVGRPTKSSNNNNNNNNSINNNNNTNN 867
Score = 92 (37.4 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 25/95 (26%), Positives = 46/95 (48%)
Query: 60 LQDTTVETKPEQTQKQNIRR---KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116
+Q TT T T Q+ + ++YV +L +S + I+ F+ G + + + K G
Sbjct: 566 IQPTTTTTPIPPTLNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASG 625
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151
K++ +AF+ + E A A+ + GR I+V
Sbjct: 626 KSKGYAFIEYDNQESAAKALQSMTNYVMCGRAIKV 660
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 184 (69.8 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 50/174 (28%), Positives = 95/174 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 111 KTLVLSNLSYSATEETLQEVFEKA-TFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNS 167
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 168 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 220
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 221 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 271
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 188 (71.2 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNR 119
+D K ++ ++ ++V L WS +K F G V+ +I +G ++R
Sbjct: 150 EDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSR 209
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP-----RPQRSASAPARETQ 174
+ +V + A+ A+ + +E+ GR I + + KP R ++ P+ E
Sbjct: 210 GYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTS--KPAGNNDRAKKFGDTPS-EPS 266
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
L++ NLS+ + E F+ + VS ++ + G+G+V F+ E+A+ A+
Sbjct: 267 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
Query: 235 SLDGKELMGRPLRLKFG--QKNDD 256
+L G+ + RP+RL F + N+D
Sbjct: 327 ALQGEYIDNRPVRLDFSSPRPNND 350
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 189 (71.6 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 56/190 (29%), Positives = 93/190 (48%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V +P SF+ EIKNLF + V +IK+K + + AFV++ S EEA A+ Q
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 139 F-DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
++++ G + ++ K+ ++ AS KL+V L +RE F
Sbjct: 64 LHNSKKFQGVLNNLQV--KYADSEQEKLAS--------KLFVGMLPRSYEEEQIRELFEP 113
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKFGQKND 255
+ V + S G GF+ F +E A +AI++L+G +L G PL +KF
Sbjct: 114 H-GVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEK 172
Query: 256 DVSESNKEEE 265
D + K+++
Sbjct: 173 DKKKKQKQQQ 182
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 36/155 (23%), Positives = 74/155 (47%)
Query: 65 VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFV 124
++ K ++++ + KL+V LP S+ +I+ LF P G V D+ I++ +++ F+
Sbjct: 77 LQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFI 136
Query: 125 TMASPEEAQAAVNQFDTQEVSG--RIIRVEFA-----KKFKKPRPQRSASAPARETQHKL 177
+ E A +A+ + ++ G + V+FA KK K+ + Q R+ Q +
Sbjct: 137 KFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKKKKQKQQQIQIQMQQRQQQQQQ 196
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
S + + +H + F S PV ++ + N+
Sbjct: 197 QQQQPSHQQQQSHQQSFQSQYQQPVVNQFPPKMNQ 231
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 170 (64.9 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGF 220
PQ S+ A + KL++ LSW V L++ FS+ F V+ ++ ++ GRS G+GF
Sbjct: 29 PQFCTSSSASPSS-KLFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGF 86
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKF 250
V FA + +A +A ++DGK L+GRPLR+ F
Sbjct: 87 VDFAEEGDALSAKDAMDGKGLLGRPLRISF 116
Score = 121 (47.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL++ L WS +K+ F+ G V +V I KG G++R F FV A +A +A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 139 FDTQEVSGRIIRVEFA 154
D + + GR +R+ FA
Sbjct: 102 MDGKGLLGRPLRISFA 117
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 186 (70.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A RP +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 186 (70.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A RP +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 186 (70.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 11 STMEPQVS-NGPTSNTTNGPSSNSRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 66
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 67 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 127 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 175
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 186 (70.5 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQ 133
++ + L V LP + + E+K+LF G + ++++ K G++ + FV P++A+
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAE 123
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A+N + + + I+V +A RP +SA R+ LYVS L + L +
Sbjct: 124 KAINTLNGLRLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMTQKELEQ 172
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
FS ++S+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 173 LFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKF 231
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 185 (70.2 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 4 STMEPQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 59
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 60 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 119
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 120 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 168
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 169 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 207
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 189 (71.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 58/234 (24%), Positives = 116/234 (49%)
Query: 31 IKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIR----------- 78
I+L+ + ++Y F T + Q T ++ E+ Q Q+ R
Sbjct: 341 IRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGES 400
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F +++ +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 401 KTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 457
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 458 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 510
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 511 ---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 561
Score = 160 (61.4 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 53/214 (24%), Positives = 102/214 (47%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K R L NLP+ + E+K +F V++ ++ K GK++ A++
Sbjct: 304 KGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVS-KDGKSKGIAYIEFK 359
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + +E G +++ + + + R + K L +SNLS+
Sbjct: 360 TEADAEKTL-----EEKQGT--EIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSA 412
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+E F KV N G+S GY F+ FA+ E+A+ A++S + +E+ GR +
Sbjct: 413 TEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 468
Query: 247 RLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
RL+ G + + S + + +SED + E+
Sbjct: 469 RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 502
Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/161 (26%), Positives = 79/161 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ S E+K + D+ ++ + G +R F +V S E+ + A+
Sbjct: 231 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL---- 286
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F +
Sbjct: 287 --ELTG--LKV-FGNEIKLEKPKGKDSKKDRDAR-TLLAKNLPYKVTQDELKEVFE---D 337
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
V ++V S +G+S G ++ F T+ +AE + G E+
Sbjct: 338 AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 376
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 189 (71.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 58/234 (24%), Positives = 116/234 (49%)
Query: 31 IKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIR----------- 78
I+L+ + ++Y F T + Q T ++ E+ Q Q+ R
Sbjct: 346 IRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGES 405
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F +++ +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 406 KTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 462
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 463 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 515
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 516 ---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 566
Score = 160 (61.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 53/214 (24%), Positives = 102/214 (47%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K R L NLP+ + E+K +F V++ ++ K GK++ A++
Sbjct: 309 KGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVS-KDGKSKGIAYIEFK 364
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + +E G +++ + + + R + K L +SNLS+
Sbjct: 365 TEADAEKTL-----EEKQGT--EIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSA 417
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+E F KV N G+S GY F+ FA+ E+A+ A++S + +E+ GR +
Sbjct: 418 TEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 473
Query: 247 RLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
RL+ G + + S + + +SED + E+
Sbjct: 474 RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 507
Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/161 (26%), Positives = 79/161 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ S E+K + D+ ++ + G +R F +V S E+ + A+
Sbjct: 236 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL---- 291
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F +
Sbjct: 292 --ELTG--LKV-FGNEIKLEKPKGKDSKKDRDAR-TLLAKNLPYKVTQDELKEVFE---D 342
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
V ++V S +G+S G ++ F T+ +AE + G E+
Sbjct: 343 AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 381
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 189 (71.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 58/234 (24%), Positives = 116/234 (49%)
Query: 31 IKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIR----------- 78
I+L+ + ++Y F T + Q T ++ E+ Q Q+ R
Sbjct: 346 IRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGES 405
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F +++ +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 406 KTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 462
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 463 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 515
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 516 ---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 566
Score = 160 (61.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 53/214 (24%), Positives = 102/214 (47%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K R L NLP+ + E+K +F V++ ++ K GK++ A++
Sbjct: 309 KGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVS-KDGKSKGIAYIEFK 364
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + +E G +++ + + + R + K L +SNLS+
Sbjct: 365 TEADAEKTL-----EEKQGT--EIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSA 417
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+E F KV N G+S GY F+ FA+ E+A+ A++S + +E+ GR +
Sbjct: 418 TEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 473
Query: 247 RLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
RL+ G + + S + + +SED + E+
Sbjct: 474 RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 507
Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/161 (26%), Positives = 79/161 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ S E+K + D+ ++ + G +R F +V S E+ + A+
Sbjct: 236 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL---- 291
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F +
Sbjct: 292 --ELTG--LKV-FGNEIKLEKPKGKDSKKDRDAR-TLLAKNLPYKVTQDELKEVFE---D 342
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
V ++V S +G+S G ++ F T+ +AE + G E+
Sbjct: 343 AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 381
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 186 (70.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 55/187 (29%), Positives = 93/187 (49%)
Query: 69 PEQTQKQNIRRK--LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVT 125
P QT N K L V LP + + E ++LF G + ++++ K G++ + FV
Sbjct: 76 PMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 135
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
P++A+ A+N + + + I+V +A RP +SA R+ LYVS L
Sbjct: 136 YIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKT 184
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG-- 243
+ L + FS ++S+++ + G S G GF+ F + EAE AI L+G++ G
Sbjct: 185 MTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAA 244
Query: 244 RPLRLKF 250
P+ +KF
Sbjct: 245 EPITVKF 251
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 59/190 (31%), Positives = 87/190 (45%)
Query: 76 NIRRKL-YVFN-LPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEA 132
N+R K + N LP + +E+ LF+ G + +II+H+ G + + FV S +A
Sbjct: 36 NLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQA 95
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
AAVN D E G+ ++V FA RP S T LYV NL + +R
Sbjct: 96 AAAVNGMDGYETRGKRLKVAFA------RPSEYES-----TSSSLYVGNLPTYMDEKKVR 144
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
E F+ N V ++ RS G F+ F +AE A +D + G RPL +KF
Sbjct: 145 ELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKF 204
Query: 251 GQKNDDVSES 260
++ S S
Sbjct: 205 VEREKKGSSS 214
Score = 117 (46.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 28/104 (26%), Positives = 53/104 (50%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPE 130
++ ++ LYV NLP +++ LFA G +VDV +++HK ++R AF+
Sbjct: 120 SEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVR 179
Query: 131 EAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPRPQRSASAPARE 172
+A+ A D + G R + V+F ++ KK S+ + ++
Sbjct: 180 DAEVAKYGMDRYMIEGASRPLTVKFVEREKKGSSSTSSGSQYKD 223
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 49/174 (28%), Positives = 96/174 (55%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 140 KTLVLSNLAYSATEETLQEVFEKA-TFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNS 196
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS + L+E F +
Sbjct: 197 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEETTEETLKESFDGS 249
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 250 ---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 300
Score = 179 (68.1 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 53/215 (24%), Positives = 106/215 (49%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K R L NLP+ + E+K +F V++ ++ K GK++ A++
Sbjct: 36 KGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVS-KDGKSKGIAYIEFK 91
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + + E+ GR I + + + + + R + K L +SNL++
Sbjct: 92 TEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSA 151
Query: 187 RSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + +E+ GR
Sbjct: 152 TEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 206
Query: 246 LRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
+RL+ G + + S + + +SE+ + E+
Sbjct: 207 IRLELQGPRGSPNARSQPSKTLFVKGLSEETTEET 241
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 39/139 (28%), Positives = 69/139 (49%)
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
R F +V S E+ + A+ E++G ++V F + K +P+ S R+ + L
Sbjct: 1 RKFGYVDFESAEDLEKAL------ELTG--LKV-FGNEIKLEKPKGKDSKKDRDAR-TLL 50
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
NL +KV L+E F + V ++V S +G+S G ++ F T+ +AE + G
Sbjct: 51 AKNLPYKVTQDELKEVFE---DAVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQG 105
Query: 239 KELMGRPLRLKF-GQKNDD 256
E+ GR + L + G+K +
Sbjct: 106 TEIDGRSISLYYTGEKGQN 124
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 6 STMEPQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 61
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 62 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 122 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 170
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 6 STMEPQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 61
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 62 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 122 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 170
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 188 (71.2 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 54/212 (25%), Positives = 97/212 (45%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
+ PE + + RR ++V L E+ F G V + +I+K + G+++ +V
Sbjct: 161 DRSPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYV 220
Query: 125 TMASPEEAQAAVNQFDTQEVSGR--IIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSN 181
A+ Q Q++ G I ++ A+K ++ R ++S H+LYV N
Sbjct: 221 EFKDESSVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSAPFHRLYVGN 279
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ + + L+ F F + + + GRS GYGFV F +A A+ ++G +L
Sbjct: 280 IHFSIDENDLQSVFEP-FGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDL 338
Query: 242 MGRPLRLKFGQKNDDVSESNKEE-EDVSEDQS 272
GR +R+ G ND + N + + S +QS
Sbjct: 339 GGRAIRVGLG--NDKFTPENTQRTQSQSANQS 368
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 185 (70.2 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 59/217 (27%), Positives = 103/217 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIK 96
S P +S N PT N S ++ + T + + L V LP + + E +
Sbjct: 11 STMEPQVS-NGPTSNTSNGPSSNNRNCPSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFR 68
Query: 97 NLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
+LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +A
Sbjct: 69 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA- 127
Query: 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRS 215
RP +SA R+ LYVS L + L + FS ++S+++ + G S
Sbjct: 128 -----RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 177
Query: 216 AGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 178 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 186 (70.5 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 55/207 (26%), Positives = 99/207 (47%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
K+N ++V NL + + ++K LF G VV+ +II KG +R V E Q
Sbjct: 117 KRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKG-HHRGMGTVEFTKNESVQ 175
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRSTHL 191
A+++FD R + V + + S A E + ++++ NL + + L
Sbjct: 176 DAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSL 235
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
++ F + + + V + N G S G+G V + T++E AI + +G E+ GR L ++ G
Sbjct: 236 KDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVREG 294
Query: 252 Q----KNDDVSESNKEEEDVSEDQSAE 274
+ KN+D N+ ED+ + + E
Sbjct: 295 RFNKRKNND--RYNQRREDLEDTRGTE 319
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 185 (70.2 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 59/217 (27%), Positives = 103/217 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIK 96
S P +S N PT N S ++ + T + + L V LP + + E +
Sbjct: 6 STMEPQVS-NGPTSNTSNGPSSNNRNCPSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFR 63
Query: 97 NLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
+LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +A
Sbjct: 64 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA- 122
Query: 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRS 215
RP +SA R+ LYVS L + L + FS ++S+++ + G S
Sbjct: 123 -----RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 172
Query: 216 AGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 173 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 185 (70.2 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 6 STMEPQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 61
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 62 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 122 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 170
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 185 (70.2 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 52/180 (28%), Positives = 92/180 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V N+ ++K LF G V++I+ GK++ F FV + E AQ AV
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 141 TQEVSGRIIRVEFA-KKFKK-----PRPQR-SASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ + G+++ V A KK ++ R +R +R +Y+ NL + L+E
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 194 FFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
FS+ F +S +KV+ E +G+ G+G V F++ EEA A+ ++G+ + +PL + GQ
Sbjct: 321 EFSS-FGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 162 (62.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 46/189 (24%), Positives = 90/189 (47%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++P+ +++ +++ NL S + LF+ G ++ +++ G ++ +A+V
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 152
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSW 184
S A A+ + ++ R + + +FK P +R+A R+ T ++V N+
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQV---YVGRFKFPE-ERAAEVRTRDRATFTNVFVKNIGD 208
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ L+E F + P S V G+S G+GFV + T E A+ A+ L GK + G+
Sbjct: 209 DIDDEKLKELF-CEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 245 PLRLKFGQK 253
L + QK
Sbjct: 268 VLYVGRAQK 276
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 47/192 (24%), Positives = 87/192 (45%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFV 124
E P +K+ ++ LYV +L + + F P G + I + ++ + +V
Sbjct: 5 EPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 64
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
P +A+ A+N + ++G+ R+ +++ R ++S +++ NL
Sbjct: 65 NFRFPADAEWALNTMNFDLINGKPFRLMWSQP--DDRLRKSGVG-------NIFIKNLDK 115
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ + L FSA N +S KVV + N G S GY +V F + A AI ++G L R
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNR 173
Query: 245 PL---RLKFGQK 253
+ R KF ++
Sbjct: 174 QVYVGRFKFPEE 185
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 185 (70.2 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 22 STMEPQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 77
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 78 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 137
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 138 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 186
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 187 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 225
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 185 (70.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 10 STMEPQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 65
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 66 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 125
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 126 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 174
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 175 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 213
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 185 (70.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 59/217 (27%), Positives = 103/217 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIK 96
S P +S N PT N S ++ + T + + L V LP + + E +
Sbjct: 11 STMEPQVS-NGPTSNTSNGPSSNNRNCPSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFR 68
Query: 97 NLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
+LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +A
Sbjct: 69 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA- 127
Query: 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRS 215
RP +SA R+ LYVS L + L + FS ++S+++ + G S
Sbjct: 128 -----RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 177
Query: 216 AGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 178 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 185 (70.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 61/219 (27%), Positives = 104/219 (47%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAE 94
S P +S N PT N S ++ P QT + + L V LP + + E
Sbjct: 11 STMEPQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEE 66
Query: 95 IKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +
Sbjct: 67 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A RP +SA R+ LYVS L + L + FS ++S+++ + G
Sbjct: 127 A------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 175
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 184 (69.8 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/180 (28%), Positives = 93/180 (51%)
Query: 86 LPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEV 144
LP + + E+K+LF G + ++++ K G++ + FV P++A+ A+N + +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 145 SGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS 204
+ I+V +A RP +SA R+ LYVS L + L + FS ++S
Sbjct: 106 QTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 212
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NL+ + L + F F V++ KV+ + N + G+GFV+ +EA AI+S
Sbjct: 278 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 337 LNGYRLGDRVLQVSF 351
Score = 85 (35.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 60 LQDTTVETKPEQTQKQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I+ + G
Sbjct: 105 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGI 164
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFA 154
+R F+ EA+ A+ + Q+ G I V+FA
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 184 (69.8 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/180 (28%), Positives = 93/180 (51%)
Query: 86 LPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEV 144
LP + + E+K+LF G + ++++ K G++ + FV P++A+ A+N + +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 145 SGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS 204
+ I+V +A RP +SA R+ LYVS L + L + FS ++S
Sbjct: 106 QTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 212
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NL+ + L + F F V++ KV+ + N + G+GFV+ +EA AI+S
Sbjct: 278 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 337 LNGYRLGDRVLQVSF 351
Score = 85 (35.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 60 LQDTTVETKPEQTQKQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I+ + G
Sbjct: 105 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGI 164
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFA 154
+R F+ EA+ A+ + Q+ G I V+FA
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A RP +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A RP +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A RP +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A RP +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 186 (70.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 50/191 (26%), Positives = 94/191 (49%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVT 125
TKP Q + ++V L W+ + F GT+V +I + G+++ + +V
Sbjct: 253 TKPSQDSNETCT--VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVD 310
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRP---QRSASAPAR--ETQHKLYV 179
+PE A+AAV T+E+ GR++ ++ + + P+P QR+ + + E ++V
Sbjct: 311 FETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFV 370
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NLS+ L F + S ++ + GR G+G+V+F+ + A+ + ++G
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGH 429
Query: 240 ELMGRPLRLKF 250
+ GRP RL F
Sbjct: 430 FIAGRPCRLDF 440
Score = 134 (52.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 35/124 (28%), Positives = 61/124 (49%)
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--LYVSNLSW 184
+S E + + E S + A+ + RP + + P++++ ++V LSW
Sbjct: 214 SSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAK-ITKPSQDSNETCTVFVGRLSW 272
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
V L + F V ++V+ + GRS GYG+V F T E A+AA+++ KE+ GR
Sbjct: 273 NVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGR 332
Query: 245 PLRL 248
+ L
Sbjct: 333 MVNL 336
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 188 (71.2 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K R L NLP+ + E+K +F V++ ++ K GK++ A++
Sbjct: 392 KGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVS-KDGKSKGIAYIEFK 447
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + + E+ GR I + + + + + R + K L +SNLS+
Sbjct: 448 TEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSA 507
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+E F KV N G+S GY F+ FA+ E+A+ A++S + +E+ GR +
Sbjct: 508 TEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 563
Query: 247 RLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
RL+ G + + S + + +SED + E+
Sbjct: 564 RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 597
Score = 184 (69.8 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 47/174 (27%), Positives = 95/174 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F +++ +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 496 KTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 552
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 553 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 605
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 606 ---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 656
Score = 153 (58.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 48/174 (27%), Positives = 87/174 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ S E+K + D+ ++ + G +R F +V S E+ + A+
Sbjct: 319 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL---- 374
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F +
Sbjct: 375 --ELTG--LKV-FGNEIKLEKPKGKDSKKDRDAR-TLLAKNLPYKVTQDELKEVFE---D 425
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQK 253
V ++V S +G+S G ++ F T+ +AE + G E+ GR + L + G+K
Sbjct: 426 AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEK 477
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 183 (69.5 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 53/202 (26%), Positives = 102/202 (50%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + + N+ Y+ N ++++F+ G + V+++K GK++
Sbjct: 176 KDREAELREKPAEFTNV----YIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKR 231
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQ-RSASAPARE 172
F FV+ S + A+ AV + ++++G+ I +VE + K+ Q + AR+
Sbjct: 232 FGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQ 291
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
KLY+ NL + LR+ FS + KV+ E+ G+S G+G + F + E A A
Sbjct: 292 AA-KLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEA--GQSKGFGLICFFSPEAAAKA 348
Query: 233 ISSLDGKELMGRPLRLKFGQKN 254
++ ++G+ L +PL + GQK+
Sbjct: 349 MAEMNGRILGSKPLNIALGQKH 370
Score = 148 (57.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 46/187 (24%), Positives = 91/187 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+P G ++ +++ + G ++ + FV A A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAI---- 154
Query: 141 TQEVSGRIIRVE--FAKKFK--KPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+E++G+++R F +FK K R PA T +Y+ N + LR FS
Sbjct: 155 -EEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTN--VYIKNFGDDMDDESLRSVFS 211
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+S KV+ +++ G+S +GFVSF + + A+ A+ ++G+++ G+ + + QK +
Sbjct: 212 KYGQTLSVKVMKDAS-GKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVE 270
Query: 257 VSESNKE 263
KE
Sbjct: 271 RQAELKE 277
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 45/181 (24%), Positives = 79/181 (43%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F G V+ + I + ++ + +V +AQ A+
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FS F
Sbjct: 72 NFDLIKGKSIRLMWS--------QRDACL-RKSGIGNVFIKNLDKSIDNKTLYEHFSP-F 121
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
+ S V EG S GYGFV + + A+ AI ++GK L L + +F + D +
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 259 E 259
E
Sbjct: 181 E 181
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 176 (67.0 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 56/221 (25%), Positives = 103/221 (46%)
Query: 30 CIKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK----- 80
C L+ S +S + +Y NF T+ ++ KP + +Q+ RK
Sbjct: 43 CRDLITSGSS--NYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + + + G ++ ++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++GR + F +FK R +R A AR + +Y+ N + L++ F F
Sbjct: 160 GMLLNGRKV---FVGQFKS-RKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFG-KF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240
P S V G+S G+GFVSF E+A+ A+ ++GKE
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Score = 155 (59.6 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH--KGGKNRNFAFVTMASPEEAQAAVNQ 138
LYV +L + A + F+P G ++ + I + G + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQHTKDAEHALDT 71
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 72 MNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAF 122
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N G S GYGFV F T E AE AI ++G L GR
Sbjct: 123 GNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 121 (47.7 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 160 PRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
P P + E + +YV NL W + L + FS +++ +E N GRS G G
Sbjct: 366 PNPFTDYATSGGEKSNTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPN-GRSRGTG 424
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
V F + AE +I+ G + GRPL + F
Sbjct: 425 VVQFDNADTAETSIAKFTGYQYGGRPLGITF 455
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+ ++YV NLS+ V+ HL++F + + + V+ N G S G G V +AT+E+A+
Sbjct: 108 QQDRRVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPN-GMSKGCGIVEYATREQAQN 166
Query: 232 AISSLDGKELMGR 244
A+++L + LM R
Sbjct: 167 AVNTLSNQNLMNR 179
Score = 113 (44.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 79 RKLYVFNLPWSFSVAEIKNLF---APCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
R+LYV NLP++ ++K+LF A GTV+ ++ G+ + V SP++A+ A
Sbjct: 222 RQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNA 281
Query: 136 VNQFDTQEVSGRIIRV 151
+ QF+ + GR + V
Sbjct: 282 IQQFNGYDWQGRTLEV 297
Score = 109 (43.4 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 29/137 (21%), Positives = 64/137 (46%)
Query: 35 HSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAE 94
HS + ++P + + ++ +++ E +Q+ R++YV NL +
Sbjct: 70 HSGSGYSGRGGSYPPPPRSFEDRAVAKEQMMQSVRESSQQD---RRVYVGNLSYDVKWHH 126
Query: 95 IKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
+K+ G V+ +++ G ++ V A+ E+AQ AVN Q + R++ +
Sbjct: 127 LKDFMRQAGDVIFADVLLLPNGMSKGCGIVEYATREQAQNAVNTLSNQNLMNRLV---YV 183
Query: 155 KKFKKPRPQRSASAPAR 171
++ ++P P R + P+R
Sbjct: 184 REDREPEP-RFSGGPSR 199
Score = 93 (37.8 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 176 KLYVSNLSWKVRSTHLREFF--SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+LYVSNL + V L++ F +A V V GR G G V+F + ++A AI
Sbjct: 223 QLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNAI 282
Query: 234 SSLDGKELMGRPLRLK 249
+G + GR L ++
Sbjct: 283 QQFNGYDWQGRTLEVR 298
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 183 (69.5 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 60/215 (27%), Positives = 103/215 (47%)
Query: 41 PSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAEIKNL 98
P +S N PT N S ++ P QT + + L V LP + + E ++L
Sbjct: 3 PQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 58
Query: 99 FAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F G + ++++ K G++ + FV P++A+ A+N + + + I+V +A
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--- 115
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
RP +SA R+ LYVS L + L + FS ++S+++ + G S G
Sbjct: 116 ---RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 167
Query: 218 YGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 202
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 183 (69.5 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 60/215 (27%), Positives = 103/215 (47%)
Query: 41 PSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT--QKQNIRRKLYVFNLPWSFSVAEIKNL 98
P +S N PT N S ++ P QT + + L V LP + + E ++L
Sbjct: 3 PQVS-NGPTSNTSNGPSSNNRNCP---SPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 58
Query: 99 FAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F G + ++++ K G++ + FV P++A+ A+N + + + I+V +A
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--- 115
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
RP +SA R+ LYVS L + L + FS ++S+++ + G S G
Sbjct: 116 ---RP---SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 167
Query: 218 YGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 202
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 187 (70.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 55/215 (25%), Positives = 105/215 (48%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K R L NLP+ + E+K +F V++ ++ K GK++ A++
Sbjct: 387 KGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVS-KDGKSKGIAYIEFK 442
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + E+ GR I + + + + + R + K L +SNLS+
Sbjct: 443 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSA 502
Query: 187 RSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + +E+ GR
Sbjct: 503 TEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 557
Query: 246 LRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
+RL+ G + + S + + +SED + E+
Sbjct: 558 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 592
Score = 184 (69.8 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 50/174 (28%), Positives = 95/174 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 491 KTLVLSNLSYSATEETLQEVFEKA-TFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNS 547
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 548 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 600
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 601 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 651
Score = 154 (59.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 49/174 (28%), Positives = 86/174 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL +S S E+K + D+ ++ + G +R F +V S E+ + A+
Sbjct: 314 LFVGNLNFSKSAPELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL---- 369
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F +
Sbjct: 370 --ELTG--LKV-FGNEIKLEKPKGKDSKKDRDAR-TLLAKNLPYKVTQDELKEVFE---D 420
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQK 253
V ++V S +G+S G ++ F T+ +AE G E+ GR + L + G+K
Sbjct: 421 AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEK 472
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 181 (68.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 54/186 (29%), Positives = 94/186 (50%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + A I +F+ G ++I G N + FV A AA+
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTG-NDPYCFVEFYENRHAAAALAA 67
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + +R F A
Sbjct: 68 MNGRKILGKDMKVNWAST---PSSQKKDTS----NHFHVFVGDLSPEISTDDVRAAF-AP 119
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F +S ++VV + G+S GYGF+SF K +AE+AI ++G+ L GR +R + +
Sbjct: 120 FGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSA 179
Query: 258 SESNKE 263
+SN E
Sbjct: 180 PKSNNE 185
Score = 149 (57.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 51/200 (25%), Positives = 94/200 (47%)
Query: 72 TQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
+QK++ +VF +L S +++ FAP G + D ++K GK++ + F++ +
Sbjct: 88 SQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFIN 147
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY--VSNLSWK- 185
+A++A+ Q + Q + GR IR +A + KP +S + A ++H Y V N S
Sbjct: 148 KWDAESAIQQMNGQWLGGRQIRTNWATR--KPSAPKSNNEGA-SSKHLSYEEVLNQSSPS 204
Query: 186 --------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
+ S + F+P + E GY FV F + E A AI S++
Sbjct: 205 NCTVYCGGIASGLSDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFDSHEGAAHAIVSVN 262
Query: 238 GKELMGRPLRLKFGQKNDDV 257
G + G ++ +G++ D+
Sbjct: 263 GTCIEGHTVKCYWGKETADM 282
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 186 (70.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 52/186 (27%), Positives = 92/186 (49%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+S + +++ +F VD+ + G +R A++ +
Sbjct: 371 QENKKERDARTLFVKNLPYSITQDDLREIF---DQAVDIRVPMGNTGTSRGIAYIEFKTE 427
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
A+ A+ + +V GR I V+F K R Q AP+ L V+NL++
Sbjct: 428 AIAEKALEEAQGSDVQGRSIIVDFTGD--KSR-QGGRGAPS--ASKVLVVNNLAFSASED 482
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+ F VS ++ N GR GY FV F E+++ A+ + + ++ GR +RL+
Sbjct: 483 SLQSVFE---KAVSIRI--PQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLE 537
Query: 250 FGQKND 255
+ Q ND
Sbjct: 538 YSQ-ND 542
Score = 151 (58.2 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 42/173 (24%), Positives = 89/173 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L V NL +S S ++++F V + I ++ G + + +AFV + E+++ A+ +
Sbjct: 470 LVVNNLAFSASEDSLQSVFEKA---VSIRIPQNNG-RPKGYAFVEFENVEDSKEALENCN 525
Query: 141 TQEVSGRIIRVEFAKKFK-KPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ GR IR+E+++ + + R S P + L+V LS L++ F
Sbjct: 526 NTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKT----LFVKGLSDDTTDQTLKDSFDG-- 579
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+++++ + + G S G+GFV F +++ +AA ++D E+ G + L + +
Sbjct: 580 -AIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYAK 631
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 46/175 (26%), Positives = 84/175 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + E+K+ + + +EI + G + F +V AS EE Q A+ + +
Sbjct: 292 LFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKAL-ELN 350
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+++ G+ ++++ A+ K+ + AR L+V NL + + LRE F
Sbjct: 351 GKKLLGQPVKLDKARS-KENSQENKKERDART----LFVKNLPYSITQDDLREIFD---Q 402
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKN 254
V +V N G S G ++ F T+ AE A+ G ++ GR + + F G K+
Sbjct: 403 AVDIRVPM-GNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKS 456
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 182 (69.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 57/200 (28%), Positives = 99/200 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 61
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREF 194
+ +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 122 F-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 254 NDDVSESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 181 KPPAPKSTYESNTKQLSYDE 200
Score = 175 (66.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 61/262 (23%), Positives = 112/262 (42%)
Query: 15 NHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQK 74
N P+ F F + H L + N + N S +DT+ T TQ+
Sbjct: 41 NDPYCF-VEFHEHRHAAAALAAMNGRKIMGKEVKV-NWATTPSSQKKDTSSSTVVS-TQR 97
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQ 133
++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+
Sbjct: 98 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 157
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS--------WK 185
A+ Q Q + GR IR +A + K P P+ + + ++ + VS S
Sbjct: 158 NAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGG 216
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V S + F+P + E GY F+ F++ E A AI S++G + G
Sbjct: 217 VTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHV 274
Query: 246 LRLKFGQKNDDVSESNKEEEDV 267
++ +G++ D+ +++ +
Sbjct: 275 VKCYWGKETLDMINPVQQQNQI 296
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 182 (69.1 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 57/200 (28%), Positives = 99/200 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFYEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREF 194
+ +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 126 F-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 254 NDDVSESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 185 KPPAPKSTYESNTKQLSYDE 204
Score = 172 (65.6 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 62/267 (23%), Positives = 113/267 (42%)
Query: 15 NHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQK 74
N P+ F F + H L + N + N S +DT+ T TQ+
Sbjct: 45 NDPYCF-VEFYEHRHAAAALAAMNGRKIMGKEVKV-NWATTPSSQKKDTSSSTVVS-TQR 101
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQ 133
++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK-------- 185
A+ Q Q + GR IR +A + K P P+ + + ++ + V+ S
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGG 220
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V S + F+P + E GY FV F + E A AI S++G + G
Sbjct: 221 VTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 246 LRLKFGQKNDDVSESNKEEEDVSEDQS 272
++ +G++ D+ +++ + Q+
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPQA 305
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 182 (69.1 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 57/200 (28%), Positives = 99/200 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREF 194
+ +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 126 F-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 254 NDDVSESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 185 KPPAPKSTYESNTKQLSYDE 204
Score = 168 (64.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 61/252 (24%), Positives = 107/252 (42%)
Query: 15 NHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQK 74
N P+ F F + H L + N + N S +DT+ T TQ+
Sbjct: 45 NDPYCF-VEFHEHRHAAAALAAMNGRKIMGKEVKV-NWATTPSSQKKDTSSSTVVS-TQR 101
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQ 133
++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK-------- 185
A+ Q Q + GR IR +A + K P P+ + + ++ + V+ S
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGG 220
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V S + F+P + E GY FV F + E A AI S++G + G
Sbjct: 221 VTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 246 LRLKFGQKNDDV 257
++ +G++ D+
Sbjct: 279 VKCYWGKETLDM 290
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 182 (69.1 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 57/200 (28%), Positives = 99/200 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREF 194
+ +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 126 F-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 254 NDDVSESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 185 KPPAPKSTYESNTKQLSYDE 204
Score = 176 (67.0 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 62/262 (23%), Positives = 112/262 (42%)
Query: 15 NHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQK 74
N P+ F F + H L + N + N S +DT+ T TQ+
Sbjct: 45 NDPYCF-VEFHEHRHAAAALAAMNGRKIMGKEVKV-NWATTPSSQKKDTSSSTVVS-TQR 101
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQ 133
++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK-------- 185
A+ Q Q + GR IR +A + K P P+ + + ++ + VS S
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGG 220
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V S + F+P + E GY FV F++ E A AI S++G + G
Sbjct: 221 VTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHV 278
Query: 246 LRLKFGQKNDDVSESNKEEEDV 267
++ +G++ D+ +++ +
Sbjct: 279 VKCYWGKETLDMINPVQQQNQI 300
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 182 (69.1 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 57/200 (28%), Positives = 99/200 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREF 194
+ +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 126 F-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 254 NDDVSESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 185 KPPAPKSTYESNTKQLSYDE 204
Score = 172 (65.6 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 62/266 (23%), Positives = 112/266 (42%)
Query: 15 NHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQK 74
N P+ F F + H L + N + N S +DT+ T TQ+
Sbjct: 45 NDPYCF-VEFHEHRHAAAALAAMNGRKIMGKEVKV-NWATTPSSQKKDTSSSTVVS-TQR 101
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQ 133
++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK-------- 185
A+ Q Q + GR IR +A + K P P+ + + ++ + V+ S
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGG 220
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V S + F+P + E GY FV F + E A AI S++G + G
Sbjct: 221 VTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 246 LRLKFGQKNDDVSESNKEEEDVSEDQ 271
++ +G++ D+ +++ + Q
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPQ 304
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 182 (69.1 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 57/200 (28%), Positives = 99/200 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFYEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREF 194
+ +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 126 F-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 254 NDDVSESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 185 KPPAPKSTYESNTKQLSYDE 204
Score = 172 (65.6 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 62/267 (23%), Positives = 113/267 (42%)
Query: 15 NHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQK 74
N P+ F F + H L + N + N S +DT+ T TQ+
Sbjct: 45 NDPYCF-VEFYEHRHAAAALAAMNGRKIMGKEVKV-NWATTPSSQKKDTSSSTVVS-TQR 101
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQ 133
++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK-------- 185
A+ Q Q + GR IR +A + K P P+ + + ++ + V+ S
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGG 220
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V S + F+P + E GY FV F + E A AI S++G + G
Sbjct: 221 VTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 246 LRLKFGQKNDDVSESNKEEEDVSEDQS 272
++ +G++ D+ +++ + Q+
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPQA 305
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 181 (68.8 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 49/167 (29%), Positives = 89/167 (53%)
Query: 94 EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
++K LF+ G V++I+ GK++ F FV + E AQ AV + + G+++ V
Sbjct: 214 KLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGR 273
Query: 154 A-KKFKK-----PRPQR-SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SK 205
A KK ++ R +R +R +Y+ NL + L+E FS+ F +S +K
Sbjct: 274 AQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSS-FGSISRAK 332
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V+ E +G+ G+G + F++ EEA A+ ++G+ + +PL++ GQ
Sbjct: 333 VMVEVGQGK--GFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 166 (63.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 47/189 (24%), Positives = 92/189 (48%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++P+ +++ +++ NL S + LF+ G+++ +++ G ++ +A+V
Sbjct: 94 SQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHF 152
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSW 184
S A A+ + ++ R + + +FK P +R+A R+ T ++V N
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQV---YVGRFKFPE-ERAAEVRTRDKATFTNVFVKNFGD 208
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ L+E FS + P S V + G+S G+GFV + T E A+ A+ L GK + G+
Sbjct: 209 DMDDDKLKELFS-EYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 245 PLRLKFGQK 253
L + QK
Sbjct: 268 VLYVGRAQK 276
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 183 (69.5 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 53/168 (31%), Positives = 87/168 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVD-VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV NLP S S I+ LF+ G V ++I+ K N+AF+ + E A A+N
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + V I+V +A F+ + + E ++V +LS +V LR FS
Sbjct: 141 NGRLVDDVEIKVNWA--FQSAAIAGNPNN-TEEPLFNIFVGDLSPEVNDEGLRNAFSKFE 197
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ + V+++ RS GYGFV+F + +AE A+ +++G+ L GR +R
Sbjct: 198 SLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIR 245
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 185 (70.2 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 49/174 (28%), Positives = 96/174 (55%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 499 KTLVLSNLAYSATEETLQEVFEKA-TFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNS 555
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS + L+E F +
Sbjct: 556 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEETTEETLKESFDGS 608
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 609 ---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 659
Score = 179 (68.1 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 53/215 (24%), Positives = 106/215 (49%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K R L NLP+ + E+K +F V++ ++ K GK++ A++
Sbjct: 395 KGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVS-KDGKSKGIAYIEFK 450
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + + E+ GR I + + + + + R + K L +SNL++
Sbjct: 451 TEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSA 510
Query: 187 RSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + +E+ GR
Sbjct: 511 TEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 565
Query: 246 LRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
+RL+ G + + S + + +SE+ + E+
Sbjct: 566 IRLELQGPRGSPNARSQPSKTLFVKGLSEETTEET 600
Score = 159 (61.0 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 49/177 (27%), Positives = 89/177 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL +S S +E+K + D+ ++ + G +R F +V S E+ + A+
Sbjct: 322 LFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL---- 377
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F +
Sbjct: 378 --ELTG--LKV-FGNEIKLEKPKGKDSKKDRDAR-TLLAKNLPYKVTQDELKEVFE---D 428
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDD 256
V ++V S +G+S G ++ F T+ +AE + G E+ GR + L + G+K +
Sbjct: 429 AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQN 483
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 180 (68.4 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 50/177 (28%), Positives = 89/177 (50%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV P +A A+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A RP +SA R+ LYVS L + + + FS
Sbjct: 97 NTLNGLKLQTKTIKVSYA------RP---SSASIRDAN--LYVSGLPKTMSQKDMEQLFS 145
Query: 197 ANFNPVSSKVVFES-NEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 146 QYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 202
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 183 (69.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 54/228 (23%), Positives = 104/228 (45%)
Query: 58 STLQDTTVETKPEQTQKQNI---RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK 114
S + +V+ K E + Q+ R+ L+V ++P+ + E+ F+ V I+
Sbjct: 9 SNVMVESVDLKQESVKNQDDGLDRKTLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDN 68
Query: 115 GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF-KKP-----RPQRSASA 168
K+R F FV+ ++ A+ + + R++RV+ AK+ +KP R ++S
Sbjct: 69 ERKSRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRRDRKPQEGNERQEKSHVE 128
Query: 169 PARETQHKLYVSNLSWKVRST-HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
P + + +L + NL W + L++ FS + V + + G+ G+ FV
Sbjct: 129 PIEKRRARLIIRNLPWSCKKPDELKKIFS-KYGAVFDAYIPKKKGGQMCGFAFVIMKKNS 187
Query: 228 EAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSED-QSAE 274
AE A+ G ++ GR + + F + + EE + ED +S+E
Sbjct: 188 AAEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVEEEEDNESSE 235
Score = 133 (51.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 43/137 (31%), Positives = 63/137 (45%)
Query: 30 CIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNI------RRKLYV 83
C+ L S T F R L + V +D + E+ +K ++ R +L +
Sbjct: 86 CLTALVESRKT-----KFKDRLLRVDVAKR-RDRKPQEGNERQEKSHVEPIEKRRARLII 139
Query: 84 FNLPWSFSVA-EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142
NLPWS E+K +F+ G V D I K KGG+ FAFV M A+ AV
Sbjct: 140 RNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGL 199
Query: 143 EVSGRIIRVEFAKKFKK 159
++ GR + V+FA + K
Sbjct: 200 KIDGREVAVDFAVEKSK 216
Score = 64 (27.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/100 (23%), Positives = 44/100 (44%)
Query: 146 GRIIRVEFAKKFKKPRPQRSASAPARET---QHKLYVSNLSWKV-RSTHLREFFSANFNP 201
GR V+FA + K+ + Q + + +H +Y ++ ++ +S + +
Sbjct: 501 GRKAVVQFATEVKEGKRQPLSKEEVNRSVKFKHSIYGADAEEEIAKSKNSKHKGVVKQAK 560
Query: 202 VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
V +V GRS GYGF+ F + A + L+ E+
Sbjct: 561 VIMEVKGSGETGRSRGYGFIEFRDHKAALMGLRWLNAHEV 600
Score = 47 (21.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 228 EAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
+ E ++ L+G L R L ++F +N V + +E+E ++ +Q+ ++
Sbjct: 611 DEEKKLAELEG--LNKRRLIVEFAIENAQVVKRRREKEMIARNQNKDN 656
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 252 QKNDDVSESNKEEEDVSE-DQSAES 275
++ ++ +NK+E D E D+ ES
Sbjct: 235 EEEEEADSTNKDENDEEEEDKDDES 259
Score = 39 (18.8 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 254 NDDVSESNKEEEDVSEDQSAES 275
NDD S E +V+ D+ +S
Sbjct: 261 NDDASSEFDELNEVNSDKELDS 282
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 183 (69.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 54/228 (23%), Positives = 104/228 (45%)
Query: 58 STLQDTTVETKPEQTQKQNI---RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK 114
S + +V+ K E + Q+ R+ L+V ++P+ + E+ F+ V I+
Sbjct: 9 SNVMVESVDLKQESVKNQDDGLDRKTLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDN 68
Query: 115 GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF-KKP-----RPQRSASA 168
K+R F FV+ ++ A+ + + R++RV+ AK+ +KP R ++S
Sbjct: 69 ERKSRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRRDRKPQEGNERQEKSHVE 128
Query: 169 PARETQHKLYVSNLSWKVRST-HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
P + + +L + NL W + L++ FS + V + + G+ G+ FV
Sbjct: 129 PIEKRRARLIIRNLPWSCKKPDELKKIFS-KYGAVFDAYIPKKKGGQMCGFAFVIMKKNS 187
Query: 228 EAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSED-QSAE 274
AE A+ G ++ GR + + F + + EE + ED +S+E
Sbjct: 188 AAEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVEEEEDNESSE 235
Score = 133 (51.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 43/137 (31%), Positives = 63/137 (45%)
Query: 30 CIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNI------RRKLYV 83
C+ L S T F R L + V +D + E+ +K ++ R +L +
Sbjct: 86 CLTALVESRKT-----KFKDRLLRVDVAKR-RDRKPQEGNERQEKSHVEPIEKRRARLII 139
Query: 84 FNLPWSFSVA-EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142
NLPWS E+K +F+ G V D I K KGG+ FAFV M A+ AV
Sbjct: 140 RNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGL 199
Query: 143 EVSGRIIRVEFAKKFKK 159
++ GR + V+FA + K
Sbjct: 200 KIDGREVAVDFAVEKSK 216
Score = 64 (27.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/100 (23%), Positives = 44/100 (44%)
Query: 146 GRIIRVEFAKKFKKPRPQRSASAPARET---QHKLYVSNLSWKV-RSTHLREFFSANFNP 201
GR V+FA + K+ + Q + + +H +Y ++ ++ +S + +
Sbjct: 501 GRKAVVQFATEVKEGKRQPLSKEEVNRSVKFKHSIYGADAEEEIAKSKNSKHKGVVKQAK 560
Query: 202 VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
V +V GRS GYGF+ F + A + L+ E+
Sbjct: 561 VIMEVKGSGETGRSRGYGFIEFRDHKAALMGLRWLNAHEV 600
Score = 47 (21.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 228 EAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
+ E ++ L+G L R L ++F +N V + +E+E ++ +Q+ ++
Sbjct: 611 DEEKKLAELEG--LNKRRLIVEFAIENAQVVKRRREKEMIARNQNKDN 656
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 252 QKNDDVSESNKEEEDVSE-DQSAES 275
++ ++ +NK+E D E D+ ES
Sbjct: 235 EEEEEADSTNKDENDEEEEDKDDES 259
Score = 39 (18.8 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 254 NDDVSESNKEEEDVSEDQSAES 275
NDD S E +V+ D+ +S
Sbjct: 261 NDDASSEFDELNEVNSDKELDS 282
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 50/174 (28%), Positives = 95/174 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKA-TFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNS 542
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 543 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 595
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 596 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 54/215 (25%), Positives = 105/215 (48%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K+ R L NLP+ + E+K +F ++ ++ K GK++ A++
Sbjct: 382 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA---EIRLVS-KDGKSKGIAYIEFK 437
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + E+ GR I + + + + + R + K L +SNLS+
Sbjct: 438 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 497
Query: 187 RSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + +E+ GR
Sbjct: 498 TEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 552
Query: 246 LRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
+RL+ G + + S + + +SED + E+
Sbjct: 553 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 587
Score = 150 (57.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/177 (25%), Positives = 85/177 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ S E+K + D+ ++ + G R F +V S E+ + A+
Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL---- 364
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F
Sbjct: 365 --ELTG--LKV-FGNEIKLEKPKGKDSKKERDAR-TLLAKNLPYKVTQDELKEVFED--- 415
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDD 256
++++ S +G+S G ++ F T+ +AE G E+ GR + L + G+K +
Sbjct: 416 --AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQN 470
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 50/174 (28%), Positives = 95/174 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 487 KTLVLSNLSYSATEETLQEVFEKA-TFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNS 543
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 544 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 596
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 597 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 54/215 (25%), Positives = 105/215 (48%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K+ R L NLP+ + E+K +F ++ ++ K GK++ A++
Sbjct: 383 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA---EIRLVS-KDGKSKGIAYIEFK 438
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + E+ GR I + + + + + R + K L +SNLS+
Sbjct: 439 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 498
Query: 187 RSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + +E+ GR
Sbjct: 499 TEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 553
Query: 246 LRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
+RL+ G + + S + + +SED + E+
Sbjct: 554 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 588
Score = 150 (57.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/177 (25%), Positives = 85/177 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ S E+K + D+ ++ + G R F +V S E+ + A+
Sbjct: 310 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL---- 365
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F
Sbjct: 366 --ELTG--LKV-FGNEIKLEKPKGKDSKKERDAR-TLLAKNLPYKVTQDELKEVFED--- 416
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDD 256
++++ S +G+S G ++ F T+ +AE G E+ GR + L + G+K +
Sbjct: 417 --AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQN 471
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 50/174 (28%), Positives = 95/174 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 488 KTLVLSNLSYSATEETLQEVFEKA-TFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNS 544
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 545 CNKREIEGRAIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS 597
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 598 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648
Score = 184 (69.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 54/215 (25%), Positives = 105/215 (48%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + ++K+ R L NLP+ + E+K +F ++ ++ K GK++ A++
Sbjct: 384 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA---EIRLVS-KDGKSKGIAYIEFK 439
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +A+ + E+ GR I + + + + + R + K L +SNLS+
Sbjct: 440 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 499
Query: 187 RSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + +E+ GR
Sbjct: 500 TEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 554
Query: 246 LRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
+RL+ G + + S + + +SED + E+
Sbjct: 555 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 589
Score = 150 (57.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/177 (25%), Positives = 85/177 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ S E+K + D+ ++ + G R F +V S E+ + A+
Sbjct: 311 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL---- 366
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G ++V F + K +P+ S R+ + L NL +KV L+E F
Sbjct: 367 --ELTG--LKV-FGNEIKLEKPKGKDSKKERDAR-TLLAKNLPYKVTQDELKEVFED--- 417
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDD 256
++++ S +G+S G ++ F T+ +AE G E+ GR + L + G+K +
Sbjct: 418 --AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQN 472
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 179 (68.1 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 101 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSS 218
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
Score = 147 (56.8 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 54 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 108
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 109 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 179 (68.1 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 101 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSS 218
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
Score = 147 (56.8 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 54 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 108
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 109 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 179 (68.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 101 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSS 218
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
Score = 147 (56.8 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 54 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 108
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 109 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 179 (68.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 101 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSS 218
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
Score = 147 (56.8 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 54 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 108
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 109 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 181 (68.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 50/201 (24%), Positives = 92/201 (45%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
++ +K +T+ + L+V NL W+ + + F G + + + G++R
Sbjct: 260 EEPAAASKKSKTE-EGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRG 318
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA-----KKFK---KPRPQRSASAPARE 172
F +V + +A A E+ GR I +++A K + K R Q A + +
Sbjct: 319 FGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQ 378
Query: 173 TQHK---LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
T + L+V NL + + E F N + ++ + GR G+G+V +++ +EA
Sbjct: 379 TSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438
Query: 230 EAAISSLDGKELMGRPLRLKF 250
A + L G E+ GRP+RL F
Sbjct: 439 RKAYNELQGAEIDGRPIRLDF 459
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 40/155 (25%), Positives = 71/155 (45%)
Query: 100 APCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG----RIIRVEFAK 155
AP D + K + + + + + S EE+ ++ ++ + + R E A
Sbjct: 205 APAKAKGDAKTSKEESDSDSDSSESSSDSDEESGSSGSESEDSDKPADSKKRKAEEEPAA 264
Query: 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRS 215
KK + + ASA L+V NLSW V L + F F +S++++ E + GRS
Sbjct: 265 ASKKSKTEEGASA-------NLFVGNLSWNVTEEWLHQEFE-QFGELSARIMTERDTGRS 316
Query: 216 AGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
G+G+V F +A A ++ E+ GR + L +
Sbjct: 317 RGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDY 351
Score = 117 (46.2 bits), Expect = 0.00037, P = 0.00037
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NLP+S + + +F P G V+ + + + G+ + F +V +S +EA+ A N+
Sbjct: 386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445
Query: 140 DTQEVSGRIIRVEFA 154
E+ GR IR++F+
Sbjct: 446 QGAEIDGRPIRLDFS 460
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 178 (67.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 50/180 (27%), Positives = 93/180 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V N ++K +F+ G V++I+ GK++ F FV + E AQ AV
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 141 TQEVSGRIIRVEFA-KKFKK-----PRPQR-SASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ ++G+++ V A KK ++ R +R +R +Y+ NL + L+E
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 194 FFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
FS+ F +S +KV+ E +G+ G+G V F++ E+A A+ ++G+ + +PL + GQ
Sbjct: 321 EFSS-FGSISRAKVMVEVGQGK--GFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 163 (62.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 47/189 (24%), Positives = 90/189 (47%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++P+ +++ +++ NL S + LF+ G ++ +++ G ++ +A+V
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 152
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSW 184
S A A+ + ++ R + + +FK P +R+A R+ T ++V N
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQV---YVGRFKFPE-ERAAEVRTRDRATFTNVFVKNFGN 208
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ L+E FS + P S V G+S G+GFV + T E A+ A+ L GK + G+
Sbjct: 209 DMDDEKLKEIFSG-YGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGK 267
Query: 245 PLRLKFGQK 253
L + QK
Sbjct: 268 VLYVGRAQK 276
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 47/192 (24%), Positives = 87/192 (45%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFV 124
E P +K+ ++ LYV +L + + F P G + I + ++ + +V
Sbjct: 5 EPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 64
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
P +A+ A+N + ++G+ R+ +++ R ++S +++ NL
Sbjct: 65 NFRFPADAEWALNTMNFDLINGKPFRLMWSQP--DDRLRKSGVG-------NIFIKNLDK 115
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ + L FSA N +S KVV + N G S GY +V F + A AI ++G L R
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNR 173
Query: 245 PL---RLKFGQK 253
+ R KF ++
Sbjct: 174 QVYVGRFKFPEE 185
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 160 (61.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 41/137 (29%), Positives = 73/137 (53%)
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-K 176
++ +AFV + E A A+ + + ++ R + F +FK R +R A A+ +
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTN 105
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+Y+ N +V L+E FS +S KV+ + N G+S G+GFVS+ E+A A+ +
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 164
Query: 237 DGKELMGRPLRLKFGQK 253
+GKE+ G+ + + QK
Sbjct: 165 NGKEISGKIIFVGRAQK 181
Score = 116 (45.9 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K +Y+ N +K LF+ G + V++++ GK++ F FV+
Sbjct: 91 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 150
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
E+A AV + + +E+SG+II V A+K
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQK 181
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 182 (69.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 61/217 (28%), Positives = 104/217 (47%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVD-VEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
RR+L++ +LP S + + F+ + V ++ K +++ + FVT A E+A+AA+
Sbjct: 36 RRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAAL 95
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQR------SASAPARETQH----------KLYVS 180
+ + G+ I+VE+A+ + + SA A R+ Q KL V
Sbjct: 96 EELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKKQREQQKADTQPPKLIVR 155
Query: 181 NLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRS-AGYGFVSFATKEEAEAAISSLDG 238
NL W +++ E +A+F K V +G AG+GFV K+ AE A+ +++G
Sbjct: 156 NLPWSIKTP---EDLAAHFRSFGKVKYVTLPKKGSQLAGFGFVVLRGKKNAEKALEAVNG 212
Query: 239 KELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
KE+ GR L + + + + KEEE D ES
Sbjct: 213 KEVDGRTLAVDWAVEKEVWENLQKEEEHAEPDVKEES 249
Score = 122 (48.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 143 EVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPV 202
E SG I +K + + A+ P RE L++ +L + L E FS ++
Sbjct: 12 EASGAITESSSSKNNVQ---EDGATQPRRE----LFIRSLPASATNESLAEHFSQSYVIK 64
Query: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ VV + +S GYGFV+FA E+A+AA+ L+G G+ +++++ Q
Sbjct: 65 HAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQ 114
Score = 104 (41.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 68 KPEQTQKQNIRR-KLYVFNLPWSFSVAE-IKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
K + QK + + KL V NLPWS E + F G V V + K KG + F FV
Sbjct: 138 KQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPK-KGSQLAGFGFVV 196
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
+ + A+ A+ + +EV GR + V++A
Sbjct: 197 LRGKKNAEKALEAVNGKEVDGRTLAVDWA 225
Score = 65 (27.9 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 21/91 (23%), Positives = 41/91 (45%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++ NL + L + F+ F P+ +++V + R G GFV F E A+A +
Sbjct: 311 IFIRNLPFTCDDESLYDHFT-QFGPLRYARIVVDPETERPRGTGFVCFWKPEHAQACVQG 369
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEED 266
K+ + G+K + +S + E+
Sbjct: 370 AP-KQQDPLAAEKEKGKKGTIIKQSVLQNEN 399
Score = 50 (22.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 252 QKNDDVSESNKEEEDVSEDQSAE 274
+++D+VS+ E+ED E++ E
Sbjct: 276 EEDDEVSDEEDEDEDEEEEEEEE 298
Score = 50 (22.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 251 GQKNDDVSESNKEEEDVSEDQSAE 274
G+ ++D+SE + EE+D D+ E
Sbjct: 264 GELDEDMSEDDDEEDDEVSDEEDE 287
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 253 KNDDVSESNKEEEDVSEDQ 271
+++D E +EEE+ ED+
Sbjct: 287 EDEDEEEEEEEEEEEKEDE 305
Score = 37 (18.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 252 QKNDDVSESNKEEEDVSEDQ 271
++++D E +EEE+ E +
Sbjct: 284 EEDEDEDEEEEEEEEEEEKE 303
Score = 37 (18.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 255 DDVSESNKEEEDVSEDQSAE 274
+D E +EEE+ E++ +
Sbjct: 285 EDEDEDEEEEEEEEEEEKED 304
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 177 (67.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 84 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSS 201
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 202 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 259
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 260 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 292
Score = 166 (63.5 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 53/187 (28%), Positives = 93/187 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVN 137
R LYV NL + I LF+ G ++I +H N + FV +A AA+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + ++ F A
Sbjct: 67 AMNGRKILGKEVKVNWATT---PSSQKKDTS----NHFHVFVGDLSPEITTEDIKSAF-A 118
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178
Query: 257 VSESNKE 263
+S +E
Sbjct: 179 APKSTQE 185
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 181 (68.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 51/174 (29%), Positives = 92/174 (52%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V H GK++ +AF+ AS E+A+ A+N
Sbjct: 489 KTLVLSNLSYSATEETLQEVFEKA-TFIKVPQNPH--GKSKGYAFIEFASFEDAKEALNS 545
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 546 CNKMEIEGRTIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS 598
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 599 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 649
Score = 177 (67.4 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 55/217 (25%), Positives = 108/217 (49%)
Query: 68 KPEQTQKQNIR--RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
KP+ + +R R L NL ++ + E+K +F V++ ++ + G+++ A++
Sbjct: 384 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---VEIRLVS-QDGRSKGIAYIE 439
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSW 184
S +A+ + + E+ GR + + + + K R +R+ + K L +SNLS+
Sbjct: 440 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGE-KGQRQERTGKNSTWSGESKTLVLSNLSY 498
Query: 185 KVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + E+ G
Sbjct: 499 SATEETLQEVFEKATFIKVP-----QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEG 553
Query: 244 RPLRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
R +RL+ G + + S + + +SED + E+
Sbjct: 554 RTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 590
Score = 155 (59.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 51/183 (27%), Positives = 87/183 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + SVAE+K + D+ + + G NR F +V S E+ + A+ +
Sbjct: 313 LFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-ELT 371
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+V G I++E KP+ + S A T L NLS+ + L+E F +
Sbjct: 372 GLKVFGNEIKLE------KPKGRDSKKVRAART---LLAKNLSFNITEDELKEVFE---D 419
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSE 259
V ++V S +GRS G ++ F ++ +AE + G E+ GR + L + G+K
Sbjct: 420 AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 477
Query: 260 SNK 262
+ K
Sbjct: 478 TGK 480
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 181 (68.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 50/174 (28%), Positives = 94/174 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V +++ GK++ +AF+ AS E+A+ A+N
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKA-TFIKVP--QNQQGKSKGYAFIEFASFEDAKEALNS 542
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 543 CNKMEIEGRTIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS 595
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 596 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
Score = 181 (68.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 55/217 (25%), Positives = 109/217 (50%)
Query: 68 KPEQTQKQNIR--RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
KP+ + +R R L NL ++ + E+K +F +++ ++ + GK++ A++
Sbjct: 381 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---LEIRLVS-QDGKSKGIAYIE 436
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSW 184
S +A+ + + E+ GR + + + + K R +R+ + K L +SNLS+
Sbjct: 437 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGE-KGQRQERTGKNSTWSGESKTLVLSNLSY 495
Query: 185 KVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
L+E F A F V ++ +G+S GY F+ FA+ E+A+ A++S + E+ G
Sbjct: 496 SATEETLQEVFEKATFIKVP-----QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEG 550
Query: 244 RPLRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
R +RL+ G + + S + + +SED + E+
Sbjct: 551 RTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 587
Score = 153 (58.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 53/207 (25%), Positives = 96/207 (46%)
Query: 59 TLQDTTVETKPEQTQ--KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116
T Q E K ++ + + L++ NL + SVAE+K + D+ ++ + G
Sbjct: 286 TKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTG 345
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
NR F +V S E+ + A+ + +V G I++E KP+ + S A T
Sbjct: 346 TNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE------KPKGRDSKKVRAART--- 395
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L NLS+ + L+E F + + ++V S +G+S G ++ F ++ +AE +
Sbjct: 396 LLAKNLSFNITEDELKEVFE---DALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEK 450
Query: 237 DGKELMGRPLRLKF-GQKNDDVSESNK 262
G E+ GR + L + G+K + K
Sbjct: 451 QGAEIDGRSVSLYYTGEKGQRQERTGK 477
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 181 (68.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 51/174 (29%), Positives = 92/174 (52%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V H GK++ +AF+ AS E+A+ A+N
Sbjct: 490 KTLVLSNLSYSATEETLQEVFEKA-TFIKVPQNPH--GKSKGYAFIEFASFEDAKEALNS 546
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 547 CNKMEIEGRTIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS 599
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 600 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 650
Score = 177 (67.4 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 55/217 (25%), Positives = 108/217 (49%)
Query: 68 KPEQTQKQNIR--RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
KP+ + +R R L NL ++ + E+K +F V++ ++ + G+++ A++
Sbjct: 385 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---VEIRLVS-QDGRSKGIAYIE 440
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSW 184
S +A+ + + E+ GR + + + + K R +R+ + K L +SNLS+
Sbjct: 441 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGE-KGQRQERTGKNSTWSGESKTLVLSNLSY 499
Query: 185 KVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + E+ G
Sbjct: 500 SATEETLQEVFEKATFIKVP-----QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEG 554
Query: 244 RPLRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
R +RL+ G + + S + + +SED + E+
Sbjct: 555 RTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 591
Score = 155 (59.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 51/183 (27%), Positives = 87/183 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + SVAE+K + D+ + + G NR F +V S E+ + A+ +
Sbjct: 314 LFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-ELT 372
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+V G I++E KP+ + S A T L NLS+ + L+E F +
Sbjct: 373 GLKVFGNEIKLE------KPKGRDSKKVRAART---LLAKNLSFNITEDELKEVFE---D 420
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSE 259
V ++V S +GRS G ++ F ++ +AE + G E+ GR + L + G+K
Sbjct: 421 AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 478
Query: 260 SNK 262
+ K
Sbjct: 479 TGK 481
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 177 (67.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 100 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 158
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 159 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSS 217
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 218 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 275
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 276 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 308
Score = 147 (56.8 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 53 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 107
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 108 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 162
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 163 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 201
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 177 (67.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 101 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSS 218
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
Score = 147 (56.8 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 54 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 108
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 109 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 177 (67.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 101 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSS 218
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
Score = 147 (56.8 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 54 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 108
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 109 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 177 (67.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 101 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSS 218
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 269
++G + G ++ +G+++ D+++ N ++ D S+
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
Score = 147 (56.8 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V +++H N + FV +A AA+ + +++ G+ ++V +A P Q+
Sbjct: 54 VGFSVLQHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT---PSSQKK 108
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFA 224
++ ++V +LS ++ + ++ F A F +S ++VV + G+S GYGFVSF
Sbjct: 109 DTS----NHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
K +AE AI + G+ L GR +R + + +S +E
Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 180 (68.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 51/178 (28%), Positives = 84/178 (47%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
R ++++ N+P+ IK+L G V VE+ K GK+R V E + A+
Sbjct: 36 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 95
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ ++SGR + ++ + R R+ A ++V+NL +KV L+E FS
Sbjct: 96 ETMNKYDLSGRPLNIKEDPDGENAR--RALQRTAGRLGSTIFVANLDFKVGWKKLKEVFS 153
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
V + E +G+S G G V+F EA AIS +G+ L RP+ +K K+
Sbjct: 154 IA-GTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKS 210
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 182 (69.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 53/195 (27%), Positives = 96/195 (49%)
Query: 66 ETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK--HKGGK--NRN 120
E + E+ +++++ L++ NL +S + +K +F+ G V I K +K G+ +
Sbjct: 716 EEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMG 775
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR--PQRSASAPARETQHKLY 178
F FV PE+AQ A+ Q V + V +++ KP R P ++T K+
Sbjct: 776 FGFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKIL 835
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFE--SNEGRSAGYGFVSFATKEEAEAAISSL 236
V N+ ++ ++E FS F + + + + + G G+GFV F TK++A+ A +L
Sbjct: 836 VRNIPFQADKREIQELFST-FGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQAL 894
Query: 237 -DGKELMGRPLRLKF 250
L GR L L++
Sbjct: 895 CHSTHLYGRRLVLEW 909
Score = 141 (54.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+L V NLP + LFA GT+ D + K GK R F F+ S EEA +A+N F
Sbjct: 3 RLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHF 62
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
+ + I VEF K F P R+ S A++T+
Sbjct: 63 NRSFIDTSRITVEFCKSFGDPTKPRAWSKHAQKTK 97
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 49/211 (23%), Positives = 93/211 (44%)
Query: 87 PWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG 146
P++ + + AP V + I+++ G + FV S EE + A+ + + + + G
Sbjct: 305 PFNVTEKNVLEFLAPLRPVA-IRIVRNAHGNKTGYIFVDFRSEEEIKQAL-KCNREYMGG 362
Query: 147 RIIRVEFAKK----FKKP-----RPQRSASAPARETQH------KLYVSNLSWKVRSTHL 191
R I + F +K K P +P + + E + +L++ NL + L
Sbjct: 363 RYIEI-FREKNVPTTKGPLKNSAKPWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDL 421
Query: 192 REFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-- 248
+ FS F P+S +S + G+ FV+F E A A + +DG+ GR L +
Sbjct: 422 QRLFS-KFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLP 480
Query: 249 ----KFGQKNDDVSESNKEEEDVSEDQSAES 275
K ++ D S+ +++ S+D++ S
Sbjct: 481 STIKKEASEDTDTQGSSYKKKKESKDKANSS 511
Score = 97 (39.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+L++ NLP++ + +++ LF+ G + ++ I K + FAFVT PE A A +
Sbjct: 406 RLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAE 465
Query: 139 FDTQEVSGRIIRV 151
D Q GR++ V
Sbjct: 466 VDGQVFQGRMLHV 478
Score = 78 (32.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 22/99 (22%), Positives = 46/99 (46%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE-GR--SAGYGFVSFATKEEAEAAI 233
L++ NL++ L+ FS S + + N+ G S G+GFV + E+A+ A+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 234 SSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQS 272
L G + L ++ ++ + ++ ++ V Q+
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQT 830
Score = 39 (18.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 228 EAEAAISSLDGK--ELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAE 274
++E ++ +L K E P + K D++ E ++ E SE+Q+ +
Sbjct: 911 DSEVSLQALRRKTAEHFHEPPKKKRSVVLDEILEQLEDSESDSEEQTLQ 959
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 158 (60.7 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 36/101 (35%), Positives = 52/101 (51%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE-GRSAGYGF 220
P S R KL+V LSW + L++ F++ F V+ V E GRS G+GF
Sbjct: 22 PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGF 80
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
VSF+ ++ A AI +DGKEL GR +R+ + S+
Sbjct: 81 VSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSS 121
Score = 121 (47.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V L W + +K F G V + +I + G++R F FV+ + + A A+ +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 139 FDTQEVSGRIIRVEFA-KKFKKPR 161
D +E++GR IRV A ++ PR
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPR 119
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 182 (69.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 54/192 (28%), Positives = 92/192 (47%)
Query: 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
++ LYV N P ++ +I LF+ G VVDV + NR F +V M P+EA A
Sbjct: 663 HVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNA 722
Query: 136 VNQFDTQEVSGRI-IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ Q + + + I+V + ++ P+ A RE LYV+N+ +KV + F
Sbjct: 723 L-QLHKKLLEEKYPIQVFISDPLRRT-PRSGAVYEGRE----LYVTNIDFKVNEKDVETF 776
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F ++ V S V + G+G+V T ++AE A+S+ GK+L R L + +
Sbjct: 777 FR-DYGQVES-VRIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPR 833
Query: 255 DDVSESNKEEED 266
+ + ++ D
Sbjct: 834 ESLEKTRVSSND 845
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 172 (65.6 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 61
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + ++ F A
Sbjct: 62 MNGRKIMGKEVKVNWATT---PSSQKKDTS----NHFHVFVGDLSPEITTEDIKAAF-AP 113
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 114 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 173
Query: 258 SESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 174 PKSTYESNTKQLSYDE 189
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 170 (64.9 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 51/184 (27%), Positives = 89/184 (48%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVN 137
RKL+V L WS + +++ F+ G VVD I+K K ++R F FV P V
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN-CVGTVL 113
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ GR I K K PR S S +K++V + T LRE+F
Sbjct: 114 ASRPHTLDGRNID----PKQKGPRSDNSKS-------NKIFVGGIPHNCGETELREYFK- 161
Query: 198 NFNPVSSKV-VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F V+ V ++++ + R G+GF++F ++ + A++ + ++MG+ + +K + D
Sbjct: 162 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 220
Query: 257 VSES 260
S++
Sbjct: 221 KSQA 224
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 172 (65.6 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + ++ F A
Sbjct: 66 MNGRKIMGKEVKVNWATT---PSSQKKDTS----NHFHVFVGDLSPEITTEDIKAAF-AP 117
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 177
Query: 258 SESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 178 PKSTYESNTKQLSYDE 193
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 179 (68.1 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 44/193 (22%), Positives = 94/193 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + FA G ++ ++ + + G ++ + FV + E A A+ +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + V KK R + A T +Y+ N+ +V R+ F F
Sbjct: 192 GMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--IYIKNIDPEVEDEEFRKLFE-KFG 247
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++S + +EG+S G+GFV+F+T E A+AA+ ++ KE+ + L + QK + E
Sbjct: 248 EITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Query: 261 NKEEEDVSEDQSA 273
+++ + + + A
Sbjct: 308 LRKQYEAARMEKA 320
Score = 136 (52.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 44/149 (29%), Positives = 73/149 (48%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
++K E+ K N +Y+ N+ E + LF G + + + GK+R F FV
Sbjct: 212 QSKFEE-MKANFTN-IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVN 269
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFKKP---RPQRSASAPARETQHK---LY 178
++ E AQAAV + + +EV + + V A KK ++ R Q A+ + ++++ LY
Sbjct: 270 FSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLY 329
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVV 207
V NL+ V LRE F S+KV+
Sbjct: 330 VKNLTDDVDDDKLRELFGPYGTITSAKVM 358
Score = 128 (50.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 49/179 (27%), Positives = 84/179 (46%)
Query: 63 TTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNF 121
T VE P T + + LYV L S + A + LF+ G V + + + ++ +
Sbjct: 28 TAVEA-PATTSQPH-SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 85
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA-RET-QHKLYV 179
A+V + A+++ + + G+ R+ ++ QR PA R+T Q +++
Sbjct: 86 AYVNYNDTAHGERALDELNYTLIKGKPCRIMWS--------QRD---PALRKTGQGNVFI 134
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
NL + + L + F+A N +S KV + G S GYGFV + T E A AI ++G
Sbjct: 135 KNLDSAIDNKALHDTFAAFGNILSCKVA-QDEFGVSKGYGFVHYETAEAANNAIKHVNG 192
Score = 91 (37.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
G+S G+GFV F++ +EA A++ ++ + + G+PL + Q+ D V S E
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD-VRRSQLE 463
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 175 (66.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 51/189 (26%), Positives = 93/189 (49%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFV 124
+Q Q+Q + ++V ++P S + + +F G ++D+ IIK K ++ AF+
Sbjct: 5 QQQQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFI 64
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
T ++ EEA A+N T E SG F + KP + + + + KL++ L
Sbjct: 65 TFSTKEEADNALNT--TNE-SGT-----FLENMNKPLQVKYSDNEIEKMERKLFIGMLGT 116
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE-LMG 243
+R F N+ + + +G+ GYGF+ ++T++E+E A+ +DGK L G
Sbjct: 117 SDED-QIRILFG-NYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPG 174
Query: 244 R--PLRLKF 250
P+ +KF
Sbjct: 175 SNLPIIVKF 183
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/92 (26%), Positives = 54/92 (58%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFV 124
+ + +Q Q+ N L+++ LP+++ E+K LFAP G V+ ++ K + ++ F FV
Sbjct: 274 QQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFV 333
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+ + + A AA+ + + + + G+ ++V F ++
Sbjct: 334 SYDNTQSAIAAIQELNGRAIEGKKLKVNFKRE 365
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 157 FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA 216
+ + + Q+ E+ + L++ L + L++ F+ N +SSKV + N +S
Sbjct: 270 YNQQQQQQQQQQQPNES-NDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSK 328
Query: 217 GYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+GFVS+ + A AAI L+G+ + G+ L++ F
Sbjct: 329 CFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVNF 362
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 157 (60.3 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S R KL++ LSW LR+ F+ + V +KV+ + GRS G+GFV
Sbjct: 22 PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRL 248
+F + A AAIS +DGKEL GR +R+
Sbjct: 82 NFNDEGAATAAISEMDGKELNGRHIRV 108
Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
KL++ L W A +++ FA G VVD ++I + G++R F FV A AA+++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 139 FDTQEVSGRIIRV 151
D +E++GR IRV
Sbjct: 96 MDGKELNGRHIRV 108
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 175 (66.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 51/180 (28%), Positives = 91/180 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V N ++K LF+ G V++I+ GK++ F FV + E AQ AV +
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 141 TQEVSGRIIRVEFA-KKFKK-----PRPQR-SASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ + G+++ V A KK ++ R +R R +Y+ NL + L+E
Sbjct: 261 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKE 320
Query: 194 FFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
FS F +S +KV+ E +G+ G+G V F++ EEA A++ ++G+ + + L + GQ
Sbjct: 321 EFSL-FGSISRAKVMMEVGQGK--GFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Score = 157 (60.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 46/189 (24%), Positives = 90/189 (47%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++P+ +++ +++ NL S + LF+ G ++ +++ G ++ +A+V
Sbjct: 94 SQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 152
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSW 184
S A A+ + ++ R + + +FK P +R+A R+ T ++V N
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQV---YVGRFKFPE-ERAAEVRTRDRATFTNVFVKNFGD 208
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ L++ FS + P S V G+S G+GFV + T E A+ A+ L GK + G+
Sbjct: 209 DIDDEKLKKLFS-EYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGK 267
Query: 245 PLRLKFGQK 253
L + QK
Sbjct: 268 VLCVGRAQK 276
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 179 (68.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 55/214 (25%), Positives = 108/214 (50%)
Query: 68 KPEQTQKQNIR--RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
KP+ + +R R L NL ++ + E+K +F +++ ++ + GK++ A++
Sbjct: 382 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---MEIRLVS-QDGKSKGIAYIE 437
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSW 184
S +A+ + + E+ GR + + + + K R +R+ + K L +SNLS+
Sbjct: 438 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGE-KGQRQERTGKTSTWSGESKTLVLSNLSY 496
Query: 185 KVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
L E F A F V ++ G+ GY F+ FA+ E+A+ A++S + E+ G
Sbjct: 497 SATKETLEEVFEKATFIKVP-----QNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEG 551
Query: 244 RPLRLKFGQKNDDVSESNKE--EEDVSEDQSAES 275
R +RL+ Q ++ S+ +K + +SED + E+
Sbjct: 552 RTIRLEL-QGSNSRSQPSKTLFVKGLSEDTTEET 584
Score = 169 (64.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 50/174 (28%), Positives = 89/174 (51%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V H GK + +AF+ AS E+A+ A+N
Sbjct: 487 KTLVLSNLSYSATKETLEEVFEKA-TFIKVPQNPH--GKPKGYAFIEFASFEDAKEALNS 543
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ E+ GR IR+E + S S P++ L+V LS L+E F +
Sbjct: 544 CNKMEIEGRTIRLEL-------QGSNSRSQPSKT----LFVKGLSEDTTEETLKESFEGS 592
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+AA +++ E+ G + L + +
Sbjct: 593 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 643
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 52/207 (25%), Positives = 95/207 (45%)
Query: 59 TLQDTTVETKPEQTQ--KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116
T Q E K ++ + + L++ NL + SV E+K + D+ ++ + G
Sbjct: 287 TKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTG 346
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
NR F +V S E+ + A+ + +V G I++E KP+ + S A T
Sbjct: 347 TNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE------KPKGRDSKKVRAART--- 396
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L NLS+ + L+E F + + ++V S +G+S G ++ F ++ +AE +
Sbjct: 397 LLAKNLSFNITEDELKEVFE---DAMEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEK 451
Query: 237 DGKELMGRPLRLKF-GQKNDDVSESNK 262
G E+ GR + L + G+K + K
Sbjct: 452 QGAEIDGRSVSLYYTGEKGQRQERTGK 478
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 174 (66.3 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 55/193 (28%), Positives = 95/193 (49%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
+ + ++N +YV L S + LF G VV+V + K + ++N+ F+ S
Sbjct: 16 QHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRS 75
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E+A A+ + ++ G+ IRV A + KK S A L++ NL V
Sbjct: 76 EEDADYAIKVLNMIKLHGKPIRVNKASQDKK-----SLDVGAN-----LFIGNLDPDVDE 125
Query: 189 THLREFFSANFNPVSS--KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L + FSA F ++S K++ + + G S G+GF+S+ + E ++AAI S+ G+ L R +
Sbjct: 126 KLLYDTFSA-FGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQI 184
Query: 247 RLKFGQKNDDVSE 259
+ + K D E
Sbjct: 185 TVSYAYKKDTKGE 197
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 177 (67.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 53/187 (28%), Positives = 89/187 (47%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVN 137
R ++ L ++++ F+ G V DV +I + + ++ A+V A+
Sbjct: 167 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLAIG 226
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFF 195
Q V G I V+ A + +K R AS R +LYV +L + + LR F
Sbjct: 227 -LTGQRVLGVPIIVQ-ASQAEKNRAAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIF 284
Query: 196 SANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F + +++ +S GRS GYGF+SFA E A+ A+ L+G EL GRP+++ +
Sbjct: 285 EP-FGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTER 343
Query: 255 DDVSESN 261
D S ++
Sbjct: 344 SDASSAS 350
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 177 (67.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 50/174 (28%), Positives = 91/174 (52%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L + NL +S + ++ +F T + V H GK++ +AF+ AS E+A+ A+N
Sbjct: 343 KTLVLSNLSYSATEETLQEVFEKA-TFIKVPQNPH--GKSKGYAFIEFASFEDAKEALNS 399
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ E+ GR IR+E + PR +A + +T L+V LS L+E F +
Sbjct: 400 CNKMEIEGRTIRLEL----QGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS 452
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +++V + G S G+GFV F ++E+A+ A +++ E+ G + L + +
Sbjct: 453 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAK 503
Score = 177 (67.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 55/217 (25%), Positives = 108/217 (49%)
Query: 68 KPEQTQKQNIR--RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
KP+ + +R R L NL ++ + E+K +F V++ ++ + G+++ A++
Sbjct: 238 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---VEIRLVS-QDGRSKGIAYIE 293
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSW 184
S +A+ + + E+ GR + + + + K R +R+ + K L +SNLS+
Sbjct: 294 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGE-KGQRQERTGKNSTWSGESKTLVLSNLSY 352
Query: 185 KVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
L+E F A F V ++ G+S GY F+ FA+ E+A+ A++S + E+ G
Sbjct: 353 SATEETLQEVFEKATFIKVP-----QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEG 407
Query: 244 RPLRLKF-GQKNDDVSESNKEE----EDVSEDQSAES 275
R +RL+ G + + S + + +SED + E+
Sbjct: 408 RTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 444
Score = 150 (57.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 51/183 (27%), Positives = 87/183 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + SVAE+K + D+ + + G NR F +V S E+ + A+ +
Sbjct: 169 LFIGNL--NKSVAELKVAISDLFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-ELT 225
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+V G I++E KP+ + S A T L NLS+ + L+E F +
Sbjct: 226 GLKVFGNEIKLE------KPKGRDSKKVRAART---LLAKNLSFNITEDELKEVFE---D 273
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSE 259
V ++V S +GRS G ++ F ++ +AE + G E+ GR + L + G+K
Sbjct: 274 AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 331
Query: 260 SNK 262
+ K
Sbjct: 332 TGK 334
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 159 (61.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 49/189 (25%), Positives = 86/189 (45%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQF 139
L+V LP S +++ LF+ G V ++ KG K R F +VT + E+ Q A+ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 140 DTQE---VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK----------LYVSNLSWKV 186
T E ++ I + + K K+ ++ +P +E + K L + NLS+K
Sbjct: 66 TTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLSFKC 125
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+ FS F + + +G+ G+ FV F EA A+ ++ KE+ GR +
Sbjct: 126 SEDDLKTVFS-QFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 247 RLKFGQKND 255
+ + D
Sbjct: 185 AVDWAVAKD 193
Score = 151 (58.2 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 35/111 (31%), Positives = 62/111 (55%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E KP++ + + + +L + NL + S ++K +F+ GT+++V I + GK R FAFV
Sbjct: 101 ELKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQ 160
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
+ EA A+ + +E+ GR + V++A K + +SAS P E + K
Sbjct: 161 FKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKSTQSASIPDYEGEEK 211
Score = 72 (30.4 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 28/109 (25%), Positives = 47/109 (43%)
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSA 216
KK R +R + E + +++ NLS+ L E F + ++V + S
Sbjct: 316 KKKRKKRKLPSDVNEGK-TVFIRNLSFDSEEEDLGELLQ-QFGDLKYVRIVLHPDTEHSK 373
Query: 217 GYGFVSFATKEEA----EAAISSLDGK--ELMGRPLRLKFGQKNDDVSE 259
G F F T+E A EAA +G +L GR L++ D+ ++
Sbjct: 374 GCAFAQFMTQEAAQKCLEAASPEAEGGGLKLDGRQLKVDLAVTRDEAAK 422
Score = 55 (24.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGK-ELMG---RPL 246
+G+S GY F F E A AA+ ++ E+ G RP+
Sbjct: 533 KGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQKRPI 571
Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 251 GQKNDDVSESNKEEED 266
G+ D + +EEED
Sbjct: 234 GENESDYDDDEEEEED 249
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 172 (65.6 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 48/176 (27%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A LY+S L + + + FS
Sbjct: 79 NTLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRNMTQKDVEDMFS 127
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKF 183
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AI++L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 82 NGLRLQSKTIKVSYARPSSEV 102
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 177 (67.4 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 49/185 (26%), Positives = 86/185 (46%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V N ++ +F+ G + ++ GK + F FV A + A AV + +
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 141 TQEVSGRIIRVEFAKKFKKPRP----QRSASAPARETQHK-----LYVSNLSWKVRSTHL 191
+ G ++ + KK +R A +E + LYV N+ + L
Sbjct: 300 DSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGL 359
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
R+ FS+ S+KV+ + N GRS G+GFV F EEA AA++ ++ K + +PL +
Sbjct: 360 RDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
Query: 252 QKNDD 256
Q+ +D
Sbjct: 419 QRKED 423
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 47/192 (24%), Positives = 97/192 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LY+ +L S A + F+ G V+ + + + + + +A+V P +A+ A++
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR +R+ ++++ P +R+ + +++ NL + + + + FS
Sbjct: 119 NFEVIHGRPMRIMWSQR--DPAARRAGNG-------NIFIKNLDRVIDNKSVYDTFSLFG 169
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KF---GQKND 255
N +S KV + +EG S GYGFV F T+ A+ AI ++G L + + + KF Q+
Sbjct: 170 NILSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
Query: 256 DVSESNKEEEDV 267
++ ES + +V
Sbjct: 229 ELGESGLKYTNV 240
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 171 (65.3 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 48/176 (27%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A LY+S L + + + FS
Sbjct: 79 NTLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRTMTQKDVEDMFS 127
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKF 183
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AI++L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 82 NGLRLQSKTIKVSYARPSSEV 102
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 171 (65.3 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 47/176 (26%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G + ++I+ K G + + FV + ++A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A LY+S L + + + FS
Sbjct: 79 NTLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRTMTQKDVEDMFS 127
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 128 PFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKF 183
Score = 120 (47.3 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AI++L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 82 NGLRLQSKTIKVSYARPSSEV 102
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 171 (65.3 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 48/176 (27%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 86
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A LY+S L + + + FS
Sbjct: 87 NTLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRTMTQKDVEDMFS 135
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 136 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKF 191
Score = 121 (47.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AI++L
Sbjct: 30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 90 NGLRLQSKTIKVSYARPSSEV 110
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 172 (65.6 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A AA+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + ++ F A
Sbjct: 66 MNGRKIMGKEVKVNWATT---PSSQKKDTS----NHFHVFVGDLSPEITTEDIKAAF-AP 117
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 177
Query: 258 SESNKEE--EDVSEDQ 271
+S E + +S D+
Sbjct: 178 PKSTYESNTKQLSYDE 193
Score = 170 (64.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 52/212 (24%), Positives = 98/212 (46%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK FAP G + D ++K GK++ + F
Sbjct: 82 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q Q + GR IR +A + K P P+ + + ++ + VS S
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSS 199
Query: 184 --------WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
V S + F+P + E GY F+ F++ E A AI S
Sbjct: 200 PGNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHAIVS 257
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDV 267
++G + G ++ +G++ D+ +++ +
Sbjct: 258 VNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 289
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 179 (68.1 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 48/169 (28%), Positives = 84/169 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V N P + I++LF+ G ++D+ K +R F ++ + A +A+ D
Sbjct: 907 LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSAL-ALD 965
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
V + K P ++ + P E + +++VSN++W L+E FS F
Sbjct: 966 GSAVGNGL---HLVVKISDPSRKQDRNGPIYEGR-EIHVSNVNWSASEDDLKELFS-RFG 1020
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
V + +G S G+G+V F++KEEA AA++ + +E GRPL +K
Sbjct: 1021 TVELVRLPRKVDGGSKGFGYVVFSSKEEATAALA-MHEQEFRGRPLHVK 1068
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 171 (65.3 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 55/194 (28%), Positives = 96/194 (49%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEA 132
+Q+ +Y+ NL S + + L G +V+V + K + ++ + + FV S E+A
Sbjct: 8 EQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDA 67
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+ A + + G+ IRV A K Q+S A +L+V NL V L
Sbjct: 68 EYASRIMNGIRLYGKPIRVNKASADK----QKSVEIGA-----ELFVGNLDPMVTEQVLY 118
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ FS N V+ V + S GYGFVSFA E ++AAI++++G+ LM + + +++
Sbjct: 119 DTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAY 178
Query: 253 KNDDVSESNKEEED 266
K D E + ++ +
Sbjct: 179 KKDGKGERHGDQAE 192
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 171 (65.3 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 48/176 (27%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 105
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A LY+S L + + + FS
Sbjct: 106 NTLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRTMTQKDVEDMFS 154
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 155 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKF 210
Score = 121 (47.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AI++L
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 109 NGLRLQSKTIKVSYARPSSEV 129
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 47/160 (29%), Positives = 82/160 (51%)
Query: 106 VDVEIIK-HKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
+D E+I KG ++ + FV P++A+ A+N + + + I+V +A RP
Sbjct: 106 LDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA------RP-- 157
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F
Sbjct: 158 -SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 214
Query: 225 TKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNK 262
+ EAE AI L+G++ G P+ +KF N+ ++N+
Sbjct: 215 KRIEAEEAIKGLNGQKPPGATEPITVKFA--NNPSQKTNQ 252
Score = 100 (40.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 21/83 (25%), Positives = 47/83 (56%)
Query: 185 KVRSTHLREFFSAN-----FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
K+ RE+F+ + + P+ S+V+ +S GYGFV++ ++AE AI++L+G
Sbjct: 84 KITGNQFREYFTDSSLFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGL 143
Query: 240 ELMGRPLRLKFGQKND-DVSESN 261
L + +++ + + + + ++N
Sbjct: 144 RLQTKTIKVSYARPSSASIRDAN 166
Score = 94 (38.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NL+ + L + F F V++ KV+ + N + G+GFV+ +EA AI+S
Sbjct: 319 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 377
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 378 LNGYRLGDRVLQVSF 392
Score = 85 (35.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 60 LQDTTVETKPEQTQKQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I+ + G
Sbjct: 145 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGI 204
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFA 154
+R F+ EA+ A+ + Q+ G I V+FA
Sbjct: 205 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 243
Score = 54 (24.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N PT N +T+ + + + ++ + L V LP + + E+K+LF G +
Sbjct: 17 NGPTCNNTANGPTTINNNC-SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEI 75
Query: 106 VDVEIIKHK--GGKNRNF 121
++++ K G + R +
Sbjct: 76 ESCKLVRDKITGNQFREY 93
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 171 (65.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/205 (25%), Positives = 99/205 (48%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + F
Sbjct: 84 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSS 201
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K + S + F+P + E GY FV F+T E A AI S
Sbjct: 202 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVS 259
Query: 236 LDGKELMGRPLRLKFGQKNDDVSES 260
++G + G ++ +G+++ D++++
Sbjct: 260 VNGTTIEGHVVKCYWGKESPDMTKN 284
Score = 166 (63.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 53/187 (28%), Positives = 93/187 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVN 137
R LYV NL + I LF+ G ++I +H N + FV +A AA+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + ++ F A
Sbjct: 67 AMNGRKILGKEVKVNWATT---PSSQKKDTS----NHFHVFVGDLSPEITTEDIKSAF-A 118
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178
Query: 257 VSESNKE 263
+S +E
Sbjct: 179 APKSTQE 185
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 171 (65.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 50/194 (25%), Positives = 90/194 (46%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQF 139
L+V LP S +++ LF+ G V ++ KG K R F +VT + E+ Q A+ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 140 DTQE---VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK----------LYVSNLSWKV 186
T E + + + + K K+ R +A +P +E +HK L + NLS+K
Sbjct: 66 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKC 125
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+ F+ ++ V + + +G+ G+ FV F EA A+ + KE+ GR +
Sbjct: 126 SEDDLKAVFT-HYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTV 184
Query: 247 RLKFGQKNDDVSES 260
+ + D ++
Sbjct: 185 AVDWAVAKDKYKDA 198
Score = 134 (52.2 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 34/104 (32%), Positives = 57/104 (54%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E K ++ + + + +L + NL + S ++K +F GTV++V I K GK R FAFV
Sbjct: 101 EPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQ 160
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
+ EA A+ + +E+ GR + V++A K + + ASAP
Sbjct: 161 FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAP 204
Score = 70 (29.7 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 27/105 (25%), Positives = 48/105 (45%)
Query: 163 QRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGF 220
++ P+ T+ K +++ NLS+ L E F + +VV + S G F
Sbjct: 312 KKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAF 370
Query: 221 VSFATKEEAEA--AISSLD----GKELMGRPLRLKFGQKNDDVSE 259
F T+E A+ A +SL+ G +L GR L++ D+ ++
Sbjct: 371 AQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAAK 415
Score = 49 (22.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK-ELMG---RPL 246
K V +G+S GY F F E A A+ + E+ G RP+
Sbjct: 519 KGVHGKMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPI 564
Score = 44 (20.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 251 GQKN----DDVSESNKEEEDVSEDQSAE 274
G+KN + V +S+ EE+D S D E
Sbjct: 218 GKKNCRVEEQVEDSDDEEDDDSHDDEEE 245
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 169 (64.5 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 44/193 (22%), Positives = 89/193 (46%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + FA G ++ ++ + + G ++ + FV + E A A+ +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 210
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + V KK R + A T +YV N++ +V R F +
Sbjct: 211 GMLLNEKKVYVGHHIP-KKDRQSKFDEMKANFTN--IYVKNINPEVTDDEFRTLFEKYGD 267
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
SS + + G+S G+GFV+F + E+A A+ L+ KE G+ L + QK + E
Sbjct: 268 VTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEE 327
Query: 261 NKEEEDVSEDQSA 273
++ + + + A
Sbjct: 328 LRKSYEAARQEKA 340
Score = 142 (55.0 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 49/180 (27%), Positives = 83/180 (46%)
Query: 62 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRN 120
DT T LYV L S + A + LF+ G+V + + + ++
Sbjct: 44 DTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLG 103
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA-RET-QHKLY 178
+A+V + + + A+ + + + GR R+ ++ QR PA R+T Q ++
Sbjct: 104 YAYVNYNTTADGEKALEELNYTLIKGRPCRIMWS--------QRD---PALRKTGQGNVF 152
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + + L + F+A N +S KV + N G S GYGFV + T E A AI ++G
Sbjct: 153 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNG 211
Score = 135 (52.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 43/139 (30%), Positives = 69/139 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFVTMASPEEAQAAVNQF 139
+YV N+ + E + LF G V + + + GK+R F FV S E+A AV +
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 140 DTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHK------LYVSNLSWKVRSTHLR 192
+ +E G+ + V A KK ++ R + AR+ + LY+ NL +V LR
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLR 363
Query: 193 EFFSANFNPVSS-KVVFES 210
+ FS F P++S KV+ +S
Sbjct: 364 QLFS-EFGPITSAKVMRDS 381
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 36/135 (26%), Positives = 62/135 (45%)
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYV 179
N A V + + A A +N + V+ + ++ P S++AP + LYV
Sbjct: 6 NTAAVDQLTSDLANANMNGGEKTTVNTNVGASFTGEEIDTAGPTPSSAAPHPQASASLYV 65
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
L V L E FS + S +V ++ RS GY +V++ T + E A+ L+
Sbjct: 66 GELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYT 125
Query: 240 ELMGRPLRLKFGQKN 254
+ GRP R+ + Q++
Sbjct: 126 LIKGRPCRIMWSQRD 140
Score = 87 (35.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 209 ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVS 268
+S G+S G+GFV FA ++A A++ ++ + + +PL + Q+ D V ++ E+ +
Sbjct: 426 KSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKD-VRKNQLEQSIQA 484
Query: 269 EDQ 271
+Q
Sbjct: 485 RNQ 487
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 152 (58.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++YV NLS LRE FS N V + V+ + RS G+GFV++++ EAEAA+S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 236 LDGKELMGRPLRLK-FG 251
+DGKEL GR + +K FG
Sbjct: 64 MDGKELNGRRVSVKLFG 80
Score = 107 (42.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL + + ++ F+ G VVD +++ + ++R F FVT +S EA+AAV+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 139 FDTQEVSGRIIRVE 152
D +E++GR + V+
Sbjct: 64 MDGKELNGRRVSVK 77
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 152 (58.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV NL WK+RS L+E S + ++V+ E + GRS GYGF+ E+AE ++ L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIE-VRDEDAEKFMTGL 63
Query: 237 DGKELMGRPL 246
+GKE+ GR L
Sbjct: 64 NGKEVEGRQL 73
Score = 101 (40.6 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVN 137
+ LYV NLPW +++ + + G V+ +I K G++R + F+ + E+A+ +
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMT 61
Query: 138 QFDTQEVSGRIIRVEFAKK 156
+ +EV GR + V A++
Sbjct: 62 GLNGKEVEGRQLVVSEARE 80
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 152 (58.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV NL WK+RS L+E S + ++V+ E + GRS GYGF+ E+AE ++ L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIE-VRDEDAEKFMTGL 63
Query: 237 DGKELMGRPL 246
+GKE+ GR L
Sbjct: 64 NGKEVEGRQL 73
Score = 101 (40.6 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVN 137
+ LYV NLPW +++ + + G V+ +I K G++R + F+ + E+A+ +
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMT 61
Query: 138 QFDTQEVSGRIIRVEFAKK 156
+ +EV GR + V A++
Sbjct: 62 GLNGKEVEGRQLVVSEARE 80
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 169 (64.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 47/176 (26%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A LY+S L + + + FS
Sbjct: 79 NTLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRSMTQKDVEDMFS 127
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI++ +G + G P+ +KF
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKF 183
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AI++L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 82 NGLRLQSKTIKVSYARPSSEV 102
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 175 (66.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 54/209 (25%), Positives = 95/209 (45%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQF 139
L+V LP S +++ LF+ G V ++ KG K R F +VT + E+ Q A+ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 140 DTQE---VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK----------LYVSNLSWKV 186
T E ++ + + + K K+ ++ P +E + K L + NLS+K
Sbjct: 66 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKC 125
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+ F A F V + +G+ G+GFV F EA A+ ++ KE+ GR +
Sbjct: 126 SEDDLKTVF-AQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 247 RLKFGQKNDDVSESNKEEEDVSEDQSAES 275
+ + D ++ + E++S ES
Sbjct: 185 AVDWAVAKDKYKDTQSVSA-IGEEKSHES 212
Score = 136 (52.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 33/111 (29%), Positives = 58/111 (52%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E K ++ + + + +L + NL + S ++K +FA G V++V I + GK R F FV
Sbjct: 101 EPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQ 160
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
+ EA A+ + +E+ GR + V++A K + +S SA E H+
Sbjct: 161 FKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHE 211
Score = 54 (24.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK-ELMGRPLR 247
K V + +G+S GY F F E A A+ ++ E+ G PL+
Sbjct: 529 KGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFG-PLK 571
Score = 47 (21.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 252 QKNDDVSESNKEEEDVSEDQSAE 274
++NDD + + EE+ V +D+ E
Sbjct: 231 EENDDDDDDDDEEDGVFDDEDEE 253
Score = 41 (19.5 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 255 DDVSESNKEEEDVSEDQS 272
+ V + +EEED+ E+++
Sbjct: 216 ESVKKKGREEEDMEEEEN 233
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 171 (65.3 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 166 (63.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/193 (23%), Positives = 82/193 (42%)
Query: 58 STLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK 117
+ +++ + + P Q Q I +V NL + + + F+ G VVD ++ + G
Sbjct: 56 ANVEENSGSSLPRQEQPNGI----FVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGL 111
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
++ F F+ +PE AQ A + + GR I V K KP + + + R L
Sbjct: 112 SKGFGFIYFETPEAAQKACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERTPTSSL 171
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
Y+ N+ ++ L F ++ + + G G+ F E A A+ +
Sbjct: 172 YIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVK 231
Query: 238 GKELMGRPLRLKF 250
ELMGR LR+ +
Sbjct: 232 LMELMGRTLRVDY 244
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 61/255 (23%), Positives = 120/255 (47%)
Query: 31 IKLLHSSNSTPSLSYNFPT-RNLC--LQVCSTLQDTTVETKPEQT----QKQNIRRK--- 80
I++ S + SL Y + NL + TL T ++ +P + + ++R+
Sbjct: 45 IRVCRDSVTRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTG 104
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V NL S + + F+ G ++ ++ + GK++++ FV E A+ A+ +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 140 DTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ + + V F KK ++ A+ + T LYV N V THLR+ F+
Sbjct: 165 NGVQLGSKNVYVGPFIKKSER------ATNDTKFTN--LYVKNFPDSVTETHLRQLFNP- 215
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
+ ++S +V N+ R + F+++A E A+ A+ +L+GK++ GQ D+
Sbjct: 216 YGEITSMIVKMDNKNRK--FCFINYADAESAKNAMDNLNGKKITDD------GQI-DETY 266
Query: 259 ESNKEEEDVSEDQSA 273
+ KEE S +A
Sbjct: 267 DPKKEEATASTSGAA 281
Score = 124 (48.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ NL + LRE F F ++S V + +S G+GFV FA++EEA A++ +
Sbjct: 452 LYIKNLDDGIDDIMLRELFEP-FGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 237 DGKELMGRPLRLKFGQKND 255
K + G+PL + +K +
Sbjct: 511 HLKIINGKPLYVGLAEKRE 529
Score = 117 (46.2 bits), Expect = 0.00073, P = 0.00073
Identities = 42/184 (22%), Positives = 88/184 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + +F G V + + + K+ +A+V + +A+ A++
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ R+ ++ + P ++S + ++V NL + + L + FS
Sbjct: 78 NYTNIKGQPARLMWSHR--DPSLRKSGTG-------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KV + G+S YGFV + +E A+ AI ++G +L + + + F +K++ +
Sbjct: 129 NILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT 187
Query: 259 ESNK 262
K
Sbjct: 188 NDTK 191
Score = 116 (45.9 bits), Expect = 0.00095, P = 0.00095
Identities = 36/141 (25%), Positives = 67/141 (47%)
Query: 40 TPSLSYNFPTRNLCLQ---VCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIK 96
TP++ Y P ++ + + + + VE K + Q + LY+ NL ++
Sbjct: 413 TPNILYVGPHQSRARRHAILKAKFDNLNVENK---NKHQGVN--LYIKNLDDGIDDIMLR 467
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
LF P GT+ ++++ + +++ F FV AS EEA AV + + ++G+ + V A+K
Sbjct: 468 ELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEK 527
Query: 157 FKKPRPQRSASAPARETQHKL 177
R QR + R H +
Sbjct: 528 ----REQRLSRLQQRFRMHPI 544
Score = 99 (39.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 29/106 (27%), Positives = 49/106 (46%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K E+ LYV N P S + ++ LF P G + + I+K KNR F F+ A
Sbjct: 182 KSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSM-IVK-MDNKNRKFCFINYA 239
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET 173
E A+ A++ + ++++ +++ KK S S A +T
Sbjct: 240 DAESAKNAMDNLNGKKITDDG-QIDETYDPKKEEATASTSGAANQT 284
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 61/255 (23%), Positives = 120/255 (47%)
Query: 31 IKLLHSSNSTPSLSYNFPT-RNLC--LQVCSTLQDTTVETKPEQT----QKQNIRRK--- 80
I++ S + SL Y + NL + TL T ++ +P + + ++R+
Sbjct: 45 IRVCRDSVTRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTG 104
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V NL S + + F+ G ++ ++ + GK++++ FV E A+ A+ +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 140 DTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ + + V F KK ++ A+ + T LYV N V THLR+ F+
Sbjct: 165 NGVQLGSKNVYVGPFIKKSER------ATNDTKFTN--LYVKNFPDSVTETHLRQLFNP- 215
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
+ ++S +V N+ R + F+++A E A+ A+ +L+GK++ GQ D+
Sbjct: 216 YGEITSMIVKMDNKNRK--FCFINYADAESAKNAMDNLNGKKITDD------GQI-DETY 266
Query: 259 ESNKEEEDVSEDQSA 273
+ KEE S +A
Sbjct: 267 DPKKEEATASTSGAA 281
Score = 124 (48.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ NL + LRE F F ++S V + +S G+GFV FA++EEA A++ +
Sbjct: 452 LYIKNLDDGIDDIMLRELFEP-FGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 237 DGKELMGRPLRLKFGQKND 255
K + G+PL + +K +
Sbjct: 511 HLKIINGKPLYVGLAEKRE 529
Score = 117 (46.2 bits), Expect = 0.00073, P = 0.00073
Identities = 42/184 (22%), Positives = 88/184 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + +F G V + + + K+ +A+V + +A+ A++
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ R+ ++ + P ++S + ++V NL + + L + FS
Sbjct: 78 NYTNIKGQPARLMWSHR--DPSLRKSGTG-------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KV + G+S YGFV + +E A+ AI ++G +L + + + F +K++ +
Sbjct: 129 NILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT 187
Query: 259 ESNK 262
K
Sbjct: 188 NDTK 191
Score = 116 (45.9 bits), Expect = 0.00095, P = 0.00095
Identities = 36/141 (25%), Positives = 67/141 (47%)
Query: 40 TPSLSYNFPTRNLCLQ---VCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIK 96
TP++ Y P ++ + + + + VE K + Q + LY+ NL ++
Sbjct: 413 TPNILYVGPHQSRARRHAILKAKFDNLNVENK---NKHQGVN--LYIKNLDDGIDDIMLR 467
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
LF P GT+ ++++ + +++ F FV AS EEA AV + + ++G+ + V A+K
Sbjct: 468 ELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEK 527
Query: 157 FKKPRPQRSASAPARETQHKL 177
R QR + R H +
Sbjct: 528 ----REQRLSRLQQRFRMHPI 544
Score = 99 (39.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 29/106 (27%), Positives = 49/106 (46%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K E+ LYV N P S + ++ LF P G + + I+K KNR F F+ A
Sbjct: 182 KSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSM-IVK-MDNKNRKFCFINYA 239
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET 173
E A+ A++ + ++++ +++ KK S S A +T
Sbjct: 240 DAESAKNAMDNLNGKKITDDG-QIDETYDPKKEEATASTSGAANQT 284
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 170 (64.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 49/196 (25%), Positives = 89/196 (45%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEA 132
+++ R KL+V L W + + F G ++D ++K+ + G++R F FVT A P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+ Q + GR I KP R+ P + +K+++ L V T LR
Sbjct: 62 NHVL-QNGPHTLDGRTID-------PKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLR 113
Query: 193 EFFSANFNPVSSKVV-FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
FF+ + V+ V+ ++ + +S G+GF+SF + E +++ L G+ + +K
Sbjct: 114 TFFN-RYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQVEIKKA 171
Query: 252 QKNDDVSESNKEEEDV 267
+ D N V
Sbjct: 172 EPRDGSGGQNSNNSTV 187
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 173 (66.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 51/177 (28%), Positives = 84/177 (47%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
R + ++ N+P+ +K+L G V VE++ GK+R A V E + A
Sbjct: 69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 128
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +SGR ++V K+ R A A ++V+NL +KV L+E FS
Sbjct: 129 EVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFS 185
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V + ++ E +G+S G G V+F EA AIS +G+ L RP+ +K ++
Sbjct: 186 MAGVVVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 241
Score = 98 (39.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL + ++K +F+ G VV +I++ K GK+R VT EA A++ F+
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
Q + R + V K ++ P+ P R Q
Sbjct: 226 GQLLFDRPMHV---KMDERALPKGDFFPPERPQQ 256
Score = 75 (31.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + L++ F+ + + + + E+ G+S G G V F + E AE A
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 671
Query: 236 LDGKELMGRPLRLK 249
++G +L GR + ++
Sbjct: 672 MNGMKLSGREIDVR 685
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 173 (66.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 51/177 (28%), Positives = 84/177 (47%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
R + ++ N+P+ +K+L G V VE++ GK+R A V E + A
Sbjct: 69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 128
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +SGR ++V K+ R A A ++V+NL +KV L+E FS
Sbjct: 129 EVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFS 185
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V + ++ E +G+S G G V+F EA AIS +G+ L RP+ +K ++
Sbjct: 186 MAGVVVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 241
Score = 98 (39.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL + ++K +F+ G VV +I++ K GK+R VT EA A++ F+
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
Q + R + V K ++ P+ P R Q
Sbjct: 226 GQLLFDRPMHV---KMDERALPKGDFFPPERPQQ 256
Score = 75 (31.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + L++ F+ + + + + E+ G+S G G V F + E AE A
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 671
Query: 236 LDGKELMGRPLRLK 249
++G +L GR + ++
Sbjct: 672 MNGMKLSGREIDVR 685
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 173 (66.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 51/177 (28%), Positives = 84/177 (47%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
R + ++ N+P+ +K+L G V VE++ GK+R A V E + A
Sbjct: 69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 128
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +SGR ++V K+ R A A ++V+NL +KV L+E FS
Sbjct: 129 EVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFS 185
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V + ++ E +G+S G G V+F EA AIS +G+ L RP+ +K ++
Sbjct: 186 MAGVVVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 241
Score = 98 (39.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL + ++K +F+ G VV +I++ K GK+R VT EA A++ F+
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
Q + R + V K ++ P+ P R Q
Sbjct: 226 GQLLFDRPMHV---KMDERALPKGDFFPPERPQQ 256
Score = 75 (31.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + L++ F+ + + + + E+ G+S G G V F + E AE A
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 671
Query: 236 LDGKELMGRPLRLK 249
++G +L GR + ++
Sbjct: 672 MNGMKLSGREIDVR 685
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 173 (66.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 51/177 (28%), Positives = 84/177 (47%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
R + ++ N+P+ +K+L G V VE++ GK+R A V E + A
Sbjct: 83 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 142
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +SGR ++V K+ R A A ++V+NL +KV L+E FS
Sbjct: 143 EVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFS 199
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V + ++ E +G+S G G V+F EA AIS +G+ L RP+ +K ++
Sbjct: 200 MAGVVVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 255
Score = 98 (39.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL + ++K +F+ G VV +I++ K GK+R VT EA A++ F+
Sbjct: 180 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 239
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
Q + R + V K ++ P+ P R Q
Sbjct: 240 GQLLFDRPMHV---KMDERALPKGDFFPPERPQQ 270
Score = 75 (31.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + L++ F+ + + + + E+ G+S G G V F + E AE A
Sbjct: 628 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 685
Query: 236 LDGKELMGRPLRLK 249
++G +L GR + ++
Sbjct: 686 MNGMKLSGREIDVR 699
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 172 (65.6 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 50/206 (24%), Positives = 102/206 (49%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFVT 125
T E + ++ R ++ L +++ F+ G V DV +I +K + + A++
Sbjct: 225 TPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIE 284
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASA--PARET-QHKLYVSNL 182
PE A+ Q + G I V+ + +K R Q +A A P T +LYV +L
Sbjct: 285 FDDPESVALALG-LSGQRLLGVPIMVQHTQA-EKNRLQNAAPAFQPKSHTGPMRLYVGSL 342
Query: 183 SWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ + LR F F + + +++ ++ GRS GYGF+++ ++A+ A+ L+G EL
Sbjct: 343 HFNITEDMLRGIFEP-FGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 401
Query: 242 MGRPLRLKFGQKNDDVSESNKEEEDV 267
GR +++ + D++ ++ + +++
Sbjct: 402 AGRLMKVGNVTERLDMNTTSLDTDEM 427
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 172 (65.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 51/194 (26%), Positives = 95/194 (48%)
Query: 65 VETKPEQTQKQNI-RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFA 122
+E + ++ + KLYV +P+ + EI++ F CG ++ V+ ++ + G A
Sbjct: 146 IEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIA 205
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR-PQRSAS---APAR-ETQHKL 177
F+T + + A+ A+ FD + R + ++ K P P+R S AP + +++
Sbjct: 206 FITFDTEDGAKRAL-AFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRV 264
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE--GRSAGYGFVSFATKEEAEAAIS- 234
Y+ NL+W +R+ FS + V + V N+ G GY V F K+ AI+
Sbjct: 265 YIGNLAWDTTERDIRKLFS---DCVINSVRLGKNKETGEFKGYAHVDF--KDSVSVAIAL 319
Query: 235 SLDGKELMGRPLRL 248
LD + + GRP+++
Sbjct: 320 KLDQQVICGRPVKI 333
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 114 (45.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 37/127 (29%), Positives = 57/127 (44%)
Query: 41 PSLSYNFPTRNLCLQVCSTLQDTTV---ETKPEQTQKQNIRRK-LYVFNLPWSFSVAEIK 96
P YN LC + + + ET PE + +R+K L+V +L + I
Sbjct: 267 PGPKYNL-VEKLCYEDYLRRESLPIDEDETPPEFVEAVGVRKKTLFVAHLSRKTEITHII 325
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
N F G VV V +I + GK+ AFV S EA+ A+ + + ++ I +E AK
Sbjct: 326 NFFKDVGEVVHVRLILNHTGKHVGCAFVEFGSANEAKMALETKNGEYLNDCKIFLEVAKM 385
Query: 157 FKKPRPQ 163
P P+
Sbjct: 386 VPYPPPK 392
Score = 111 (44.1 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P P + L+V+NLS + + + + +FF+ VS +++ ++EG+ GYGFV
Sbjct: 172 PIEEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMV-NHEGKHVGYGFV 230
Query: 222 SFATKEEAEAAISSLDGKEL 241
FA+ +E + A+ + +G+ L
Sbjct: 231 EFASADETKKALENKNGEYL 250
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V+NLS + + +H+ +FF V +++ ++ G G GFV FA+ EA+ A+ +
Sbjct: 438 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIV-NHRGEHVGCGFVEFASVNEAQKALQKM 496
Query: 237 DGKELMGRPLRL 248
+G+ L R + L
Sbjct: 497 NGENLRSREIFL 508
Score = 95 (38.5 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 58 STLQDTTVETKPEQT-----QKQNIRRK-LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII 111
S Q+ + TK +Q ++ +R K L+V NLP+ + I + F G VV V++I
Sbjct: 41 SLQQNDLLVTKSDQANLISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLI 100
Query: 112 KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+ GK FV AS EA+ A+ + + + + I ++ A K
Sbjct: 101 VNLKGKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANK 145
Score = 87 (35.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 24/99 (24%), Positives = 50/99 (50%)
Query: 65 VETKP-EQTQK--QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
+E+ P E+ ++ ++ L+V NL +++I + F G VV + ++ + GK+ +
Sbjct: 168 LESHPIEEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGY 227
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP 160
FV AS +E + A+ + + + I ++ AK P
Sbjct: 228 GFVEFASADETKKALENKNGEYLHDHKIFIDVAKTAPYP 266
Score = 85 (35.0 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V++LS K TH+ FF V +++ ++ G+ G FV F + EA+ A+ +
Sbjct: 310 LFVAHLSRKTEITHIINFFKDVGEVVHVRLIL-NHTGKHVGCAFVEFGSANEAKMALETK 368
Query: 237 DGKEL 241
+G+ L
Sbjct: 369 NGEYL 373
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 150 (57.9 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLYV NL+++V L F+A S++VV + GRS G+GFV + +EA+AAI+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 236 LDGKELMGRPL 246
L+GKE+ GR L
Sbjct: 64 LNGKEMDGRNL 74
Score = 131 (51.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NL + A+++ FA GTV +++ + G++R F FV M S +EAQAA+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 139 FDTQEVSGRIIRVEFAK 155
+ +E+ GR + V A+
Sbjct: 64 LNGKEMDGRNLMVNEAR 80
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 173 (66.0 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 54/178 (30%), Positives = 96/178 (53%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFVTMASPEEAQAAVNQ 138
KL++ ++P + + +++ LF G VV+V +IK K G+ + FV A+ EEA+ A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 139 FDTQ-EVSGRI--IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
Q + G + I+V +A R + A +HKL+V++L+ + + + E F
Sbjct: 183 LHNQYTLPGAMGPIQVRYADG---ERERHGA------IEHKLFVASLNKQATAKEIEEIF 233
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-G--RPLRLKF 250
A + V + + +S G GFV F+++E A AA+S+L G +M G +PL ++F
Sbjct: 234 -APYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRF 290
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 173 (66.0 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 54/178 (30%), Positives = 96/178 (53%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFVTMASPEEAQAAVNQ 138
KL++ ++P + + +++ LF G VV+V +IK K G+ + FV A+ EEA+ A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 139 FDTQ-EVSGRI--IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
Q + G + I+V +A R + A +HKL+V++L+ + + + E F
Sbjct: 183 LHNQYTLPGAMGPIQVRYADG---ERERHGA------IEHKLFVASLNKQATAKEIEEIF 233
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-G--RPLRLKF 250
A + V + + +S G GFV F+++E A AA+S+L G +M G +PL ++F
Sbjct: 234 -APYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRF 290
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 167 (63.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 47/176 (26%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ + + + I+V +A RP A LY+S L + + + FS
Sbjct: 79 STLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRTMTQKDVEDMFS 127
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKF 183
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AIS+L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 82 NGLRLQSKTIKVSYARPSSEV 102
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 167 (63.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 47/176 (26%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ + + + I+V +A RP A LY+S L + + + FS
Sbjct: 79 STLNGLRLQSKTIKVSYA------RPSSEVIKDAN-----LYISGLPRTMTQKDVEDMFS 127
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKF 183
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ T ++AE AIS+L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 237 DGKELMGRPLRLKFGQKNDDV 257
+G L + +++ + + + +V
Sbjct: 82 NGLRLQSKTIKVSYARPSSEV 102
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV +I + + ++ A+V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q V G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 264 DMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 323 VGHVTERTDASSAS 336
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 174 (66.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 60/235 (25%), Positives = 107/235 (45%)
Query: 39 STPSLSYNFP-TRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKN 97
+TPS P T+ ++Q+ E + E+ + L++ NL + S ++
Sbjct: 661 TTPSAPRPEPQTKEKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQK 720
Query: 98 LFAPCGTVVDVEIIKH--KGGK--NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
F+ CG V I K K GK + + FV +PE AQ A+ Q V + V+
Sbjct: 721 TFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKI 780
Query: 154 AKKFKKP---RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
+++ K + +R ++T K+ V N+ ++ LRE F F + + + +
Sbjct: 781 SEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELF-CTFGELKTVRLPKK 839
Query: 211 NEGRS-AGYGFVSFATKEEAEAAISSL-DGKELMGRPLRLKFGQKNDDVSESNKE 263
G S G+GF+ F TK++A+ A S+L L GR L L++ + V + ++
Sbjct: 840 GIGGSHRGFGFIDFLTKQDAKKAFSALCHSTHLYGRRLVLEWADAEETVDDLRRK 894
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 59/214 (27%), Positives = 100/214 (46%)
Query: 87 PWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG 146
P++ ++K P V + K+ G+N + +V + S E + A+ + D + G
Sbjct: 298 PFNVKEQQVKEFMMPLKPVA-IRFAKNSDGRNSGYVYVDLRSEAEVERAL-RLDKDYMGG 355
Query: 147 RIIRVEFAKKFKKPR--PQRSASAP--ARETQH-----------KLYVSNLSWKVRSTHL 191
R I V A FK R +RS RE + +L++ N+ + L
Sbjct: 356 RYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDL 415
Query: 192 REFFSANFNPVSSKVVF--ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL--- 246
+E FS + P+S +V+F +S + G+ FV++ E A +A++ LDG GR L
Sbjct: 416 KELFSKH-GPLS-EVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVM 473
Query: 247 --RLKFGQKND---DV--SESNKEEEDVSEDQSA 273
RLK +K D D S S K ++D ++D++A
Sbjct: 474 ASRLK-KEKADQGPDAPGSSSYKRKKD-AKDKAA 505
Score = 124 (48.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 31/115 (26%), Positives = 59/115 (51%)
Query: 58 STLQDTTVETKPEQTQKQNIRR--KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHK 114
S ++ V + +++++ +L++ N+P++ + ++K LF+ G + +V I
Sbjct: 376 SEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSL 435
Query: 115 GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
K + FAFVT PE A +A+ Q D GR++ V A + KK + + AP
Sbjct: 436 TKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHV-MASRLKKEKADQGPDAP 489
Score = 116 (45.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 31/97 (31%), Positives = 42/97 (43%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+L V NLP + +FA GT+ D + K GK R F FV + E+AQ A+ F
Sbjct: 3 RLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHF 62
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
+ V + VE F P R S R+ K
Sbjct: 63 NKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSK 99
Score = 51 (23.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 249 KFGQKNDDVSESNKEEEDVSEDQ 271
K KND V +EEE+ +DQ
Sbjct: 675 KSAVKNDSVQNEEEEEEEEEDDQ 697
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 168 (64.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 52/186 (27%), Positives = 92/186 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF+ G + ++I G N + FV A +A+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFYEHRHAASALAA 65
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + ++ F A
Sbjct: 66 MNGRKIMGKEVKVNWATT---PSSQKKDTS----NHFHVFVGDLSPEITTEDIKAAF-AP 117
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 177
Query: 258 SESNKE 263
+S E
Sbjct: 178 PKSTYE 183
Score = 165 (63.1 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 52/202 (25%), Positives = 93/202 (46%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +IK FAP G + D ++K GK++ + F
Sbjct: 82 TTPS-SQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V+ + +A+ A+ Q Q + GR IR +A + K P P+ + + ++ + V+ S
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDDVVNQSS 199
Query: 184 WK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
V S + F+P + E GY FV F + E A AI S
Sbjct: 200 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVS 257
Query: 236 LDGKELMGRPLRLKFGQKNDDV 257
++G + G ++ +G++ D+
Sbjct: 258 VNGTTIEGHVVKCYWGKETPDM 279
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 171 (65.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 46/195 (23%), Positives = 95/195 (48%)
Query: 66 ETKPEQTQKQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFV 124
++ E+ Q ++ ++ NL ++K L G + ++ I+ GK++ F F
Sbjct: 174 KSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFA 233
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---LYVSN 181
S E A+ V + + G+ I +A + +K + + ET+++ LY+ N
Sbjct: 234 NFESAEAAKNVVENENGKIFHGKPI---YAGRAQKKIEREAELKHTFETKYQGVNLYIKN 290
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEAAISSLDGKE 240
+ + + LRE FS F ++S +V + ++ S G+GFV + +EA A++ ++G+
Sbjct: 291 IDDSIDNDKLREVFS-QFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRM 349
Query: 241 LMGRPLRLKFGQKND 255
+ +PL + Q+ D
Sbjct: 350 IGTKPLYVALAQRKD 364
Score = 159 (61.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 51/234 (21%), Positives = 106/234 (45%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK---- 80
I++ +N+ SLSY N+ + TL +T + K + +Q+ RK
Sbjct: 39 IRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVG 98
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + + F+ G ++ +++ G ++ F FV + E A A+ +
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKV 158
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ + F FK + +R + T ++ NLS V L+E +
Sbjct: 159 NGMMINGQKV---FVGPFKSSK-ERGQPTEVKFTN--VFFKNLSEDVGPDQLKELLQ-QY 211
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+++ + ++G+S G+GF +F + E A+ + + +GK G+P+ QK
Sbjct: 212 GEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 41/170 (24%), Positives = 86/170 (50%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAA 135
I LYV +L S + +F G V ++ + + + ++A+V + +A+ A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
++ + + G+ R+ ++++ P ++S +++ NL + L + F
Sbjct: 68 LDTLNNTPIRGKACRIMWSQR--DPSLRKSGVG-------NVFIKNLDKGIDHKALYDTF 118
Query: 196 SANFNPVSSKVVFESNEGRSA-GYGFVSFATKEEAEAAISSLDGKELMGR 244
SA N +S KVV +++G S+ G+GFV + T+E A+ AI+ ++G + G+
Sbjct: 119 SAFGNILSCKVV--TDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQ 166
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 149 (57.5 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPE 130
TQ++ + KL++ L + + + F+ CG VV+ +I+ + +++ F FVT AS +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAK 155
EAQ A+ +F+ Q+++GR I V++AK
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAK 111
Score = 121 (47.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230
R KL++ LS+ L E FS V +++V + RS G+GFV+FA+ +EA+
Sbjct: 30 RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89
Query: 231 AAISSLDGKELMGRPLRLKFGQ 252
A+ +G++L GR + + + +
Sbjct: 90 KALMEFNGQQLNGRTIFVDYAK 111
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 166 (63.5 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 48/176 (27%), Positives = 85/176 (48%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R L V LP + + E+++LF+ G V ++I+ K G + + FV + ++A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V FA RP A LY+S L + + + F
Sbjct: 79 NTLNGLRLQSKTIKVSFA------RPSSETIKDAN-----LYISGLPRTMTQKDVEDMFL 127
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
+ ++S+V+ + G S G F+ F + EAE AI+S +G + G P+ +KF
Sbjct: 128 PFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKF 183
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V+ L + LR FS+ S+K++ + G S GYGFV++ ++AE AI++L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 237 DGKELMGRPLRLKFGQKNDD-VSESN 261
+G L + +++ F + + + + ++N
Sbjct: 82 NGLRLQSKTIKVSFARPSSETIKDAN 107
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 166 (63.5 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 48/186 (25%), Positives = 87/186 (46%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + S E+++LF+ G V ++I+ K G + + FV +P +A+ A+
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ + + + I+V +A RP + A LY+S L + + E F
Sbjct: 93 STLNGLRLQSKTIKVSYA------RPSSDSIKDAN-----LYISGLPKTMTQKDVEEMFG 141
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKFGQKN 254
++S+V+ + G S G F+ F + EAE AI L+G++ G + +KF
Sbjct: 142 RYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASP 201
Query: 255 DDVSES 260
+ V +
Sbjct: 202 NQVKNT 207
Score = 123 (48.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/91 (28%), Positives = 51/91 (56%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+++ L V+ L + LR FS+ S+K++ + G S GYGFV++ +AE
Sbjct: 31 DSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAER 90
Query: 232 AISSLDGKELMGRPLRLKFGQ-KNDDVSESN 261
AIS+L+G L + +++ + + +D + ++N
Sbjct: 91 AISTLNGLRLQSKTIKVSYARPSSDSIKDAN 121
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 168 (64.2 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 50/174 (28%), Positives = 86/174 (49%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVN 137
R ++ L ++++ F+ G V DV II + + ++ A+V + A+
Sbjct: 157 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 216
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET--QHKLYVSNLSWKVRSTHLREFF 195
Q + G I V+ A + +K R A+ + T +LYV +L + + LR F
Sbjct: 217 -LTGQRLLGVPIIVQ-ASQAEKNRLAAMANNLQKGTGGPMRLYVGSLHFNITEDMLRGIF 274
Query: 196 SANFNPVSSKVVF-ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
F + + V+ +S+ GRS GYGF++F+ E A A+ L+G EL GRP+R+
Sbjct: 275 EP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRI 327
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 148 (57.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
+Q+K+YV +LS+ V + L+ FF +K++ + GRS G+ F+++ T++ A+ A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 233 ISSLDGKELMGRPLRLKFGQKN 254
+S +G +L GR +R+ ++N
Sbjct: 76 VSKANGIDLQGRKIRVNIAREN 97
Score = 117 (46.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/88 (29%), Positives = 52/88 (59%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
+ T QN K+YV +L + + E+++ F G + + ++I + G+++ FAF+T +
Sbjct: 12 KMTMSQN---KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGT 68
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+ AQ AV++ + ++ GR IRV A++
Sbjct: 69 QDAAQEAVSKANGIDLQGRKIRVNIARE 96
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 148 (57.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
+Q+K+YV +LS+ V + L+ FF +K++ + GRS G+ F+++ T++ A+ A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 233 ISSLDGKELMGRPLRLKFGQKN 254
+S +G +L GR +R+ ++N
Sbjct: 76 VSKANGIDLQGRKIRVNIAREN 97
Score = 117 (46.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/88 (29%), Positives = 52/88 (59%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
+ T QN K+YV +L + + E+++ F G + + ++I + G+++ FAF+T +
Sbjct: 12 KMTMSQN---KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGT 68
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+ AQ AV++ + ++ GR IRV A++
Sbjct: 69 QDAAQEAVSKANGIDLQGRKIRVNIARE 96
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 167 (63.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 52/186 (27%), Positives = 90/186 (48%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL + A I LF G ++I G N + FV A A++
Sbjct: 8 KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAG-NDPYCFVEFFEHRHAAASLAA 66
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ G+ ++V +A P Q+ ++ ++V +LS ++ + +R F A
Sbjct: 67 MNGRKIMGKEVKVNWATS---PSSQKKDTS----NHFHVFVGDLSPEITTDDIRAAF-AP 118
Query: 199 FNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F +S ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + +
Sbjct: 119 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 178
Query: 258 SESNKE 263
++ E
Sbjct: 179 PKATYE 184
Score = 159 (61.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 54/202 (26%), Positives = 94/202 (46%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
T P +QK++ +VF +L + +I+ FAP G + D ++K GK++ + F
Sbjct: 83 TSPS-SQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGF 141
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-----ETQHKLY 178
V+ + +A+ A+ Q Q + GR IR +A + K P P+ + + E ++
Sbjct: 142 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKATYETNTKHLSFDEVVNQSS 200
Query: 179 VSNLSWKVR--STHLRE-FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
SN + +T L E F+P + E GY FV F + E A AI S
Sbjct: 201 PSNCTVYCGGVTTGLTEQLMRQTFSPFGQ--IMEVRVFPDKGYSFVRFNSHESAAHAIVS 258
Query: 236 LDGKELMGRPLRLKFGQKNDDV 257
++G L G ++ +G++ D+
Sbjct: 259 VNGTSLEGHIVKCYWGKETTDM 280
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 165 (63.1 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 48/195 (24%), Positives = 95/195 (48%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI------IKHK 114
Q T ++ ++ + I ++YV ++ + I+ FAP G + +++ +KHK
Sbjct: 93 QLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHK 152
Query: 115 GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
G FAFV PE AQ A+ Q ++ + GR I+V + +P A
Sbjct: 153 G-----FAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 207
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+++YV+++ + ++ F A F + S + + G+ GYGF+ + + ++ A+
Sbjct: 208 NRIYVASVHQDLSDDDIKSVFEA-FGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 266
Query: 234 SSLDGKELMGRPLRL 248
SS++ +L G+ LR+
Sbjct: 267 SSMNLFDLGGQYLRV 281
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 169 (64.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 49/194 (25%), Positives = 90/194 (46%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQF 139
L+V LP S +++ LF+ G V ++ KG K R F +VT + E+ Q A+ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 140 DTQE---VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK----------LYVSNLSWKV 186
T E ++ I + + K K+ R ++ +P +E +HK L + NLS+K
Sbjct: 66 TTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADKKARLIIRNLSFKC 125
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+ F+ ++ V + +G+ G+ F+ F EA A+ + KE+ GR +
Sbjct: 126 SEDDLKSVFT-HYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTV 184
Query: 247 RLKFGQKNDDVSES 260
+ + D ++
Sbjct: 185 AVDWAVAKDKYKDA 198
Score = 123 (48.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 33/113 (29%), Positives = 60/113 (53%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E K ++ + + + +L + NL + S ++K++F GTV++V I + GK R FAF+
Sbjct: 101 EPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQ 160
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFK-KPRPQRSASAPARETQHK 176
+ EA A+ + +E+ GR + V++A K K K S S + ++ K
Sbjct: 161 FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKKSSERK 213
Score = 66 (28.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 23/105 (21%), Positives = 46/105 (43%)
Query: 163 QRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGF 220
++ P+ T+ K +++ NLS+ L E F + ++V + S G F
Sbjct: 312 KKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRIVLHPDTEHSKGCAF 370
Query: 221 VSFATKEEAEAAISSLD------GKELMGRPLRLKFGQKNDDVSE 259
F T+E A+ +++ G +L GR L++ D+ ++
Sbjct: 371 AQFVTQEAAQKCLAAASPETEGGGLKLDGRQLKVDLAVTRDEAAK 415
Score = 53 (23.7 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK-ELMG---RPL 246
K V +G+S GY FV F E A A+ + E G RP+
Sbjct: 519 KAVHGKMKGQSLGYAFVEFQKHEHALRALRHFNNNPETFGPQKRPI 564
Score = 41 (19.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 254 NDDVSESNKEEEDVSEDQSAES 275
+DD + +++ED S D + S
Sbjct: 232 DDDEDDDTQDDEDESRDSTVAS 253
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 239 KELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
KE + R++ ++DD E + ++D ED+S +S
Sbjct: 215 KESSKKSCRVEEQVEDDDDDEDDDTQDD--EDESRDS 249
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 166 (63.5 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 52/215 (24%), Positives = 99/215 (46%)
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK--G-------GKNR 119
P + + + L + LP + S E+++LF+ G V ++I+ K G G +
Sbjct: 46 PMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSL 105
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYV 179
+ FV +P +A+ A+N + + + I+V +A RP A LY+
Sbjct: 106 GYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYA------RPSSDGIKDAN-----LYI 154
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
S L + ++ + F+ ++S+++ + G S G F+ F + EAE AI L+G
Sbjct: 155 SGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS 214
Query: 240 ELMG--RPLRLKFGQKNDDVSESNKEEEDVSEDQS 272
+ G P+ +KF N + S++++ + QS
Sbjct: 215 KPSGASEPITVKFAA-NPNQSKNSQLLSQLYHTQS 248
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 168 (64.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 52/176 (29%), Positives = 92/176 (52%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL S S + LF+ G V +II+ G N +AF+ ++ + A A+
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPG--NDPYAFIEYSNYQAATTALTA 64
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ + + I+V +A +P+ S+ H ++V +LS ++ + LRE F A
Sbjct: 65 MNKRLFLEKEIKVNWATS-PGNQPKTDISS-----HHHIFVGDLSPEIETETLREAF-AP 117
Query: 199 FNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F +S+ ++V + + +S GY FVSF K EAE AI +++G+ + R +R + +
Sbjct: 118 FGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTR 173
Score = 92 (37.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 25/99 (25%), Positives = 46/99 (46%)
Query: 67 TKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAF 123
T P K +I ++F +L ++ FAP G + + I++ K++ +AF
Sbjct: 81 TSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAF 140
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFKKPR 161
V+ EA+ A+ + Q + R IR ++ +K PR
Sbjct: 141 VSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPR 179
Score = 78 (32.5 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S+P T +Y V S L F P+ VF+ G+ F+ F TK
Sbjct: 216 SSPTNTT---VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDK-----GFSFIKFVTK 267
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
E A AI E+ G ++ +G++N + +N
Sbjct: 268 EAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNSAN 302
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 166 (63.5 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 48/172 (27%), Positives = 86/172 (50%)
Query: 94 EIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152
+++ F+ G V DV +I + + ++ A+V A+ Q V G I V+
Sbjct: 11 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LTGQRVLGVPIIVQ 69
Query: 153 FAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFE 209
A + +K R A+ + + +LYV +L + + LR F F + S +++ +
Sbjct: 70 -ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMD 127
Query: 210 SNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
S GRS GYGF++F+ E A+ A+ L+G EL GRP+++ + D S ++
Sbjct: 128 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSAS 179
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 147 (56.8 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 45/167 (26%), Positives = 82/167 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + K ++ +A+V P +A+ A+
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L FSA
Sbjct: 64 NFDVIKGRPVRIMWSQR--DPSLRKSGVG-------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + E GYGFV F +E AE AI +++G L R +
Sbjct: 115 NILSCKVACD--EKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 147 (56.8 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 45/167 (26%), Positives = 82/167 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + K ++ +A+V P +A+ A+
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L FSA
Sbjct: 64 NFDVIKGRPVRIMWSQR--DPSLRKSGVG-------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + E GYGFV F +E AE AI +++G L R +
Sbjct: 115 NILSCKVACD--EKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 168 (64.2 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 50/194 (25%), Positives = 93/194 (47%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPE 130
T ++ R ++ L +++ F+ G V DV II + + ++ A++
Sbjct: 142 TPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDST 201
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRS 188
A+ Q + G I V+ A + +K R A+ + + +LYV +L + +
Sbjct: 202 SVPLAIG-LSGQRLLGVPIIVQ-ASQAEKNRAAALANNLQKGSAGPMRLYVGSLHFNITE 259
Query: 189 THLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR F F + S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP++
Sbjct: 260 DMLRGIFEP-FGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMK 318
Query: 248 LKFGQKNDDVSESN 261
+ + D S ++
Sbjct: 319 VGHVTERTDASTAS 332
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 120 (47.3 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 32/123 (26%), Positives = 64/123 (52%)
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N+ + QE++ R E +K+ K + P + + K+ + NL ++ +R+ F+
Sbjct: 762 NETNVQEINKRRELPENSKQSIKS----NGGQPNKPSS-KIIIKNLPFESTIKEIRKLFT 816
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
A + + S + + G G+GFV F T+EEA+ A+ +L GR L L++ +++ +
Sbjct: 817 A-YGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDKN 875
Query: 257 VSE 259
+ E
Sbjct: 876 IDE 878
Score = 119 (46.9 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN-----EGRSAGYGFVSFATKEEAEA 231
+Y+ NL+WK + L F + + V+ + ++N E G+GF+ F++K+ A
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 232 AISSLDGKELMGRPLRLKFGQKND-DVSESNKEEE-DVSEDQSAES 275
I L+G + G + LK KN+ +V E NK E + QS +S
Sbjct: 740 CIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKS 785
Score = 99 (39.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NL +S +++ +F+ G + ++ I I + K++ AF+ PE A A+N
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 139 FDTQEVSGRIIRV 151
D + GR+I V
Sbjct: 422 MDGKVFQGRLIHV 434
Score = 92 (37.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
+++V NLS+ + L + FS F +S + + + +S G F+ + E A A++
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFS-KFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALN 420
Query: 235 SLDGKELMGRPLRLKFGQ 252
+DGK GR + + G+
Sbjct: 421 DMDGKVFQGRLIHVLPGK 438
Score = 82 (33.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++ V LP + K F GTV D +IIK K GK+R F F+ ++ + A+ A++
Sbjct: 5 RICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK-KDGKSRLFGFIGFSTEQSAKNALSLN 63
Query: 140 DTQEVSGRIIRVEFA 154
T + +I+ VE A
Sbjct: 64 GTFIDTSKIV-VETA 77
Score = 58 (25.5 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 23/108 (21%), Positives = 43/108 (39%)
Query: 55 QVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK 114
+V ST + T T + N + +Y+ NL W + + F V+V I
Sbjct: 655 EVESTTK-TAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKA 713
Query: 115 GGKNRN------FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
KN + F F+ +S + A + + + + G I ++ + K
Sbjct: 714 NPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDK 761
Score = 51 (23.0 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 25/111 (22%), Positives = 44/111 (39%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L V N+P+ E+ LF+ G + V + R A + P EA+
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELSRVVL-----SPARTIALIEYIHPNEAKVGFKNLA 609
Query: 141 TQEVSGRIIRVEFAKK--FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ + +E+A + FK P P + + +++ SN +V ST
Sbjct: 610 YSKFHHVPLYLEWAPEGVFKLPAPPKEIKK-SEKSEKSSDSSNDKKEVEST 659
WARNING: HSPs involving 885 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.128 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 275 275 0.00079 115 3 11 22 0.38 34
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1135
No. of states in DFA: 605 (64 KB)
Total size of DFA: 190 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.82u 0.16s 25.98t Elapsed: 00:00:01
Total cpu time: 25.88u 0.17s 26.05t Elapsed: 00:00:02
Start: Sat May 11 11:45:46 2013 End: Sat May 11 11:45:48 2013
WARNINGS ISSUED: 2