BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044184
(275 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 313 bits (802), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/278 (58%), Positives = 203/278 (73%), Gaps = 21/278 (7%)
Query: 1 MAA--LEAAATSIFLTNHPFSFSCLF--PKLPHCIKLLHSSNSTPSLSYNFP-------- 48
MAA LEAA S F T+HP S+S F PK P LH SN TP +S+NFP
Sbjct: 1 MAASILEAATLSFFSTHHP-SYSRFFLSPKSPPLSLNLHISNPTPLISHNFPQPSLTQNH 59
Query: 49 --TRNLCLQVCSTLQDTTVETKPEQ--TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT 104
+++LC Q+CST+Q+ TVE PE+ Q+ N++RKL+V NLPWSFSV +IK+LF CGT
Sbjct: 60 PRSKSLCFQLCSTVQEVTVEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGT 119
Query: 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP---- 160
V DVEIIK K G++R FAFVTM + EEAQAA+++F++ EVSGRIIRVEFAK+ ++P
Sbjct: 120 VSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPR 179
Query: 161 RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGF 220
P A PA ET+HKLY+SNL+WKVR +HLREFFS N NPVSS+VVF+ GRS+GYGF
Sbjct: 180 LPGTPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGF 239
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
VSFAT+EEA AAIS+ GKELMGRP+RLKF + D S
Sbjct: 240 VSFATREEAVAAISAFSGKELMGRPIRLKFSEDKADES 277
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/278 (58%), Positives = 203/278 (73%), Gaps = 21/278 (7%)
Query: 1 MAA--LEAAATSIFLTNHPFSFSCLF--PKLPHCIKLLHSSNSTPSLSYNFP-------- 48
MAA LEAA S F T+HP S+S F PK P LH SN TP +S+NFP
Sbjct: 1 MAASILEAATLSFFSTHHP-SYSRFFLSPKSPPLSLNLHISNPTPLISHNFPQPSLTQNH 59
Query: 49 --TRNLCLQVCSTLQDTTVETKPEQ--TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT 104
+++LC Q+CST+Q+ T+E PE+ Q+ N++RKL+V NLPWSFSV +IK+LF CGT
Sbjct: 60 PRSKSLCFQLCSTVQEVTMEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGT 119
Query: 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP---- 160
V DVEIIK K G++R FAFVTM + EEAQAA+++F++ EVSGRIIRVEFAK+ ++P
Sbjct: 120 VSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPR 179
Query: 161 RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGF 220
P A PA ET+HKLY+SNL+WKVR +HLREFFS N NPVSS+VVF+ GRS+GYGF
Sbjct: 180 LPGTPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGF 239
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
VSFAT+EEA AAIS+ GKELMGRP+RLKF + D S
Sbjct: 240 VSFATREEAVAAISAFSGKELMGRPIRLKFSEDKADES 277
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/289 (58%), Positives = 198/289 (68%), Gaps = 15/289 (5%)
Query: 1 MAALEAAATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNF-----------PT 49
MAALEA+ SIF S LF P LHSS PS+ + PT
Sbjct: 1 MAALEAS-LSIFSLYRSSSSKLLFSHRPPPSMSLHSSAFIPSICLKYPLYPLPLLYTNPT 59
Query: 50 RNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
++CS++Q+ VE KPEQTQ+ N +RKL+V NLPWS SV +IKNLF CGTV DVE
Sbjct: 60 TKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVE 119
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
IIK K G++R +AFVTM S EEAQA V +FD+ E+SGRIIRVEFAK+FKKP P
Sbjct: 120 IIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPA 179
Query: 170 AR---ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
ET+HKLYVSNL+WKVRSTHLREFFS+NFNPVS +VVF+S GRS GYGF SFATK
Sbjct: 180 GPPAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATK 239
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
EEAEAAIS+LDGKELMGRP+ LKF K D S KEE D+SE Q E+
Sbjct: 240 EEAEAAISALDGKELMGRPVHLKFSVKTIDESGDEKEEGDISEGQPEEA 288
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/256 (61%), Positives = 184/256 (71%), Gaps = 14/256 (5%)
Query: 34 LHSSNSTPSLSYNF-----------PTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLY 82
LHSS PS+ + PT ++CS++Q+ VE KPEQTQ+ N +RKL+
Sbjct: 3 LHSSAFIPSICLKYPLYPLPLLYTNPTTKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLF 62
Query: 83 VFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142
V NLPWS SV +IKNLF CGTV DVEIIK K G++R +AFVTM S EEAQA V +FD+
Sbjct: 63 VLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSY 122
Query: 143 EVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSANF 199
E+SGRIIRVEFAK+FKKP P ET+HKLYVSNL+WKVRSTHLREFFS+NF
Sbjct: 123 ELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFFSSNF 182
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
NPVS +VVF+S GRS GYGF SFATKEEAEAAIS+LDGKELMGRP+ LKF K D S
Sbjct: 183 NPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFSVKTIDESG 242
Query: 260 SNKEEEDVSEDQSAES 275
KEE D+SE Q E+
Sbjct: 243 DEKEEGDISEGQPEEA 258
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 168/281 (59%), Positives = 200/281 (71%), Gaps = 10/281 (3%)
Query: 1 MAALEAAATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNF-------PTRNLC 53
MAA+EAA + S S L P + K SNS P LS+NF R L
Sbjct: 1 MAAMEAAVSLFLPHPSSSSKSLLSPTFINLFKHKCRSNSIPLLSHNFSLSNIHLTARKLS 60
Query: 54 LQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH 113
+ ST Q+ + PE+TQ+ +RKLYVFNLPWS SV +IKNLF CGTV DVEIIK
Sbjct: 61 FERFSTAQEIMI---PEETQETTQKRKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQ 117
Query: 114 KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET 173
K G++R FAFVT+AS EEAQAA+++ D+ EVSGRIIRVEFAK+ K P P ARET
Sbjct: 118 KNGRSRGFAFVTLASGEEAQAAIDKLDSHEVSGRIIRVEFAKRLKPPSPPSPTGTSARET 177
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+HK+YVSNL+WKVRSTHLREFFS NF+PVSS+VVF+S GRS+GYGFVSFAT+EEAEAAI
Sbjct: 178 RHKIYVSNLAWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAI 237
Query: 234 SSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAE 274
S+LDGKELMGRPLRLKF + D SES +EE+ EDQS +
Sbjct: 238 SALDGKELMGRPLRLKFSDRKTDESESENQEEENVEDQSEQ 278
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 194/265 (73%), Gaps = 17/265 (6%)
Query: 24 FPKLPHCIKLLHSSNSTPSLSYNFPT-------------RNLCLQVCSTLQDTTVETKPE 70
F KLP IKL S S+P LS N PT R ++CS LQ+ T+E E
Sbjct: 28 FNKLPSPIKL-RISFSSPLLSLN-PTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASE 85
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+ Q N +RKLY+FNLPWS SV +IK LF CGTV DVEIIK K G++R FAFVTMASP+
Sbjct: 86 ENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPD 145
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
EAQAA+ +FD+QE+SGR+I+VEFAK+ KKP P + P ET +KLYVSNL+WKVRS +
Sbjct: 146 EAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNN 205
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
LR+FFS NFNP++++VVF+S GRSAGYGFVSFAT+EEA+ A+SSL+GKELMGRPLRLKF
Sbjct: 206 LRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKF 265
Query: 251 GQKNDDVSESNKEEEDVSEDQSAES 275
++N V+E+ +ED+ E Q ES
Sbjct: 266 SERN--VNEAETPKEDIVESQPEES 288
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 194/265 (73%), Gaps = 17/265 (6%)
Query: 24 FPKLPHCIKLLHSSNSTPSLSYNFPT-------------RNLCLQVCSTLQDTTVETKPE 70
F KLP IKL S S+P LS N PT R ++CS LQ+ T+E E
Sbjct: 22 FNKLPSPIKL-RISFSSPLLSLN-PTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASE 79
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+ Q N +RKLY+FNLPWS SV +IK LF CGTV DVEIIK K G++R FAFVTMASP+
Sbjct: 80 ENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPD 139
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
EAQAA+ +FD+QE+SGR+I+VEFAK+ KKP P + P ET +KLYVSNL+WKVRS +
Sbjct: 140 EAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNN 199
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
LR+FFS NFNP++++VVF+S GRSAGYGFVSFAT+EEA+ A+SSL+GKELMGRPLRLKF
Sbjct: 200 LRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKF 259
Query: 251 GQKNDDVSESNKEEEDVSEDQSAES 275
++N V+E+ +ED+ E Q ES
Sbjct: 260 SERN--VNEAETPKEDIVESQPEES 282
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 198/299 (66%), Gaps = 28/299 (9%)
Query: 1 MAALEAA-----ATSIFLTNHPFSFSCLFPKL-PHCIKLLHSSNSTPSLSYNFP---TRN 51
MA LEAA +S +++P+ F L P + L SN +P S +R
Sbjct: 1 MAVLEAALCIFSFSSSSSSSNPYLFCKRSSSLKPTALSLRLPSNLSPVFSLRSGGDNSRR 60
Query: 52 LCLQVCSTLQ-------DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT 104
L +CS + +T+ E K E+TQK N++RKL+VFNLPWS SV +I LF CGT
Sbjct: 61 LVSVLCSVAEKETSAEEETSQEEKTEETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGT 120
Query: 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
V +VEII+ K GKNR FAFVTMAS EEAQAA+++FDT +VSGRII V FA++FKKP P+
Sbjct: 121 VNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTSQVSGRIISVNFARRFKKPTPKP 180
Query: 165 SASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSA-NFNPVSSKVVFESNEGRSAGYGF 220
P+ +T+HKLYVSNL+WK RSTHLRE F+A +FNPVS++VVF EGRS+GYGF
Sbjct: 181 PNDLPSPPPGDTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGF 240
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKF-------GQKNDDVSESNKEEE-DVSEDQ 271
VSFAT+EEAE AI+ LDGKE+MGRP+ LKF + D V ++N E+ D ED+
Sbjct: 241 VSFATREEAEDAIAKLDGKEIMGRPIILKFSLRSASESEDGDTVGDNNTSEDGDTVEDK 299
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 190/286 (66%), Gaps = 20/286 (6%)
Query: 1 MAALEAAATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTL 60
MA LE+A T +F P FS K P IKL S++ S F T LC Q+CSTL
Sbjct: 1 MATLESALT-LF---APQRFSA---KAPISIKLHASTSHIFSSKSFFKTGRLCFQLCSTL 53
Query: 61 QDTT-VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR 119
Q+ E E Q + +KLYV NL WS + A+I +LFA CGTV DVEIIK K G+++
Sbjct: 54 QEVAPTEQTLEPIQPTDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKDGRSK 113
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLY 178
+AFVTMAS EEAQAAV++FD+ E+SGRIIRVE AK+ KKP P ET+H +Y
Sbjct: 114 GYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRLKKPPSLPPPPGPRPGETRHVIY 173
Query: 179 VSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
SNL+WK RSTHLR+ F+ NF P S++VVF+S GRSAGYGFVSF T+E+AEAAIS++D
Sbjct: 174 ASNLAWKARSTHLRQVFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVD 233
Query: 238 GKELMGRPLRLKFGQKNDDVSESNKE--------EEDVSEDQSAES 275
GKELMGRPLRLKF +KN + N E EED EDQ +++
Sbjct: 234 GKELMGRPLRLKFSEKNKEAGSQNDEDQIKDAGSEED--EDQGSDA 277
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/269 (54%), Positives = 183/269 (68%), Gaps = 21/269 (7%)
Query: 23 LFPKLPHCIKLLHSSNSTPS-LSYNFP-------TRNLCLQVCSTLQ-------DTTVET 67
LF K +KL S PS LS F +R L +CS + +T+ E
Sbjct: 24 LFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRRLVSVLCSVAEKETSADEETSQEE 83
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K E+TQ N++RKL+VFNLPWS SV +I LF CGTV +VEII+ K GKNR FAFVTMA
Sbjct: 84 KTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMA 143
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA---RETQHKLYVSNLSW 184
S EEAQAA+++FDT +VSGRII V FA++FKKP P+ P+ +T+HKLYVSNL+W
Sbjct: 144 SGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAW 203
Query: 185 KVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
K RSTHLRE F+ A+FNPVS++VVF EGRS+GYGFVSFAT+EEAE AI+ L+GKE+MG
Sbjct: 204 KARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMG 263
Query: 244 RPLRLKFGQKNDDVSESNK--EEEDVSED 270
RP+ LKF ++ SE E + SED
Sbjct: 264 RPITLKFSLRSASESEDGDSVEANNASED 292
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/269 (55%), Positives = 183/269 (68%), Gaps = 6/269 (2%)
Query: 2 AALEAAATSIFLTNHPFSFSCLF-PKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTL 60
A LE+A I FS S F K P IKL S++ S +F T LC Q+CSTL
Sbjct: 3 ATLESAF--ILFAPQRFSNSRRFSAKAPISIKLHASTSLFFSSKSSFKTGRLCFQLCSTL 60
Query: 61 QDTT-VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR 119
Q+ E PE TQ + +KLYV NL WS + A+I +LFA GTV DVEIIK K G+++
Sbjct: 61 QEVAATEETPELTQPTDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKDGRSK 120
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK-PRPQRSASAPARETQHKLY 178
+AFVTMAS EEAQAAV++FD+ E+SGRIIRVE AK+FKK P P ET+H +Y
Sbjct: 121 GYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRFKKPPSPPPPPGPRPGETRHVIY 180
Query: 179 VSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
SNL+WK RSTHLR+ F+ NF P S++VVF+S GRSAGYGFVSF TKE+AEAAIS++D
Sbjct: 181 ASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAISTVD 240
Query: 238 GKELMGRPLRLKFGQKNDDVSESNKEEED 266
GKELMGRPLRLKF +K D E++D
Sbjct: 241 GKELMGRPLRLKFSEKKDKAGREKDEDQD 269
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/288 (51%), Positives = 188/288 (65%), Gaps = 23/288 (7%)
Query: 1 MAALEAA----ATSIFLTNHPF-----SFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRN 51
MAALE++ A F T H F F L L H LL SSN++ T
Sbjct: 1 MAALESSLSVFAPQRFSTIHLFPAKPPEFVKLHASLSHSHNLLFSSNASSK------TPK 54
Query: 52 LCLQVCSTLQDTTVETKP----EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
C Q+CS LQ+ + Q I++KLYVFNLPWS S A+IK+LF CGTV D
Sbjct: 55 PCTQLCSALQEVAEAATEEEPEQDQQATYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTD 114
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
VEII+ K G+ + +AFVTMAS EEAQAAV++FDT E+SGRI+RVE AK+FKKP P S
Sbjct: 115 VEIIRGKDGRGKGYAFVTMASGEEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPS 174
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFN-PVSSKVVFESNEGRSAGYGFVSFATK 226
P E +H +Y SNL+WKVRSTHLREFF+ NF P+S+++VF++ G++ GYGF+S+ TK
Sbjct: 175 PPPSEARHVIYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTK 234
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE-EEDVSEDQSA 273
EEAEAAIS+LDGKELMGR L LK +K V E+ E +ED+ + A
Sbjct: 235 EEAEAAISALDGKELMGRSLFLKISEKK--VKEAGSEKDEDLDQGHDA 280
>gi|388504962|gb|AFK40547.1| unknown [Lotus japonicus]
Length = 285
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 147/288 (51%), Positives = 186/288 (64%), Gaps = 23/288 (7%)
Query: 1 MAALEAA----ATSIFLTNHPF-----SFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRN 51
MAALE++ A F T H F F L L H LL SSN++ T
Sbjct: 1 MAALESSLSVFAPQRFSTIHLFPAKPPEFVKLHASLSHSHNLLFSSNASSK------TPK 54
Query: 52 LCLQVCSTLQDTTVETKP----EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
C Q+CS LQ+ + Q I++KLYVF LPWS S A+IK+LF CGTV D
Sbjct: 55 PCTQLCSALQEVAEAATEEEPEQDQQATYIKKKLYVFTLPWSMSAADIKDLFGQCGTVTD 114
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
VEII+ K G+ + +AFVTMAS EEAQAAV++FDT E+SGRI+RVE AK+FKKP P S
Sbjct: 115 VEIIRGKDGRGKGYAFVTMASGEEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPS 174
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFN-PVSSKVVFESNEGRSAGYGFVSFATK 226
P E +H +Y SNL+WKVRSTHLREFF+ NF P+S+++VF++ G + GYGF+S+ TK
Sbjct: 175 PPPSEARHVIYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTK 234
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE-EEDVSEDQSA 273
EEAEAAIS+LDGKELMGR L LK +K V E+ E +ED+ + A
Sbjct: 235 EEAEAAISALDGKELMGRSLFLKISEKK--VKEAGSEKDEDLDQGHDA 280
>gi|125549538|gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/201 (59%), Positives = 146/201 (72%), Gaps = 7/201 (3%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
RRKLYV N+PWSF EI+ LFA CG V DVE+IK K GK + FAFVTMA+ EEA AAV
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ ++ +V GR IRVEF+K F+KP P + R HKLYVSNL WK R+ +++EF S
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPGTILER---HKLYVSNLPWKARAPNMKEFCS- 194
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
FNP+S+KVVF+S G+SAGYGFVSF TKEEAEAA++ LDGKELMGRP+RL++ Q DD
Sbjct: 195 KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWRQSVDDS 254
Query: 258 SESNK---EEEDVSEDQSAES 275
+S K E EDV+ D AE
Sbjct: 255 DDSVKADGEIEDVNVDGEAEG 275
>gi|357485175|ref|XP_003612875.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355514210|gb|AES95833.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 324
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 143/197 (72%), Gaps = 2/197 (1%)
Query: 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
N+++ L VFNLPWS S +IK+LF CGTV+DVEIIK K GK + + FVTM S E AQAA
Sbjct: 93 NVKKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAA 152
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
V++F+ E+SGRI+RVEFAK FKK + +E ++ +Y SNL+WK RSTHLR+ F
Sbjct: 153 VDKFNATEISGRILRVEFAKGFKK-PRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIF 211
Query: 196 SANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ NF PVS++VVF+ G+SAGYGFVS+ T+EEAEAAIS+L GKEL+GRPL +K ++
Sbjct: 212 TENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERK 271
Query: 255 DDVSESNKEEEDVSEDQ 271
+ S + EE V + Q
Sbjct: 272 VKEAGSEEVEEKVDDVQ 288
>gi|242076980|ref|XP_002448426.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
gi|241939609|gb|EES12754.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
Length = 278
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/190 (55%), Positives = 138/190 (72%), Gaps = 8/190 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
RRKLYV NLPWSF EI+ LFA GTV DVE+IK K G+NR FAFVTM++ EEA AA
Sbjct: 74 RRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGRNRGFAFVTMSTTEEAAAAAE 133
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ ++ +V GR I+VEF++ F+KP P P +HKLYVSNL WK R+ +++EFF A
Sbjct: 134 KLNSHDVMGRTIKVEFSRSFRKPAP-----LPPIIERHKLYVSNLPWKARAPNVKEFF-A 187
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
FNP+S+ V+F++ G++AGY FVSF TKEEAEAA++ LDGKELMGRP+RL + + DD
Sbjct: 188 KFNPLSANVIFDN--GKAAGYCFVSFGTKEEAEAALTELDGKELMGRPVRLYWRESGDDK 245
Query: 258 SESNKEEEDV 267
E K + +V
Sbjct: 246 VEVAKADSEV 255
>gi|226499642|ref|NP_001147738.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195613392|gb|ACG28526.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414585685|tpg|DAA36256.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 272
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/198 (55%), Positives = 143/198 (72%), Gaps = 8/198 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
EQ +K RRKLYV NLPWSF EI+ LFA GTV DVE+IK K G+NR FAFVTM++
Sbjct: 60 EQGEK---RRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGRNRGFAFVTMSTA 116
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EEA AA ++ ++ +V GR I+VEF+K F+ RP +HKLYVSNL WK R+
Sbjct: 117 EEAAAAADKLNSHDVMGRTIKVEFSKSFR--RPAPPPPPGTIIERHKLYVSNLPWKARAP 174
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
+++EFF ANFNP+S+ V+F++ G++AGYGFVSF TKEEAEAA++ LDGKEL+GRP+RL
Sbjct: 175 NVKEFF-ANFNPLSANVIFDN--GKAAGYGFVSFGTKEEAEAALTELDGKELLGRPVRLN 231
Query: 250 FGQKNDDVSESNKEEEDV 267
+ + DD E K + +V
Sbjct: 232 WRESGDDKVEVAKADSEV 249
>gi|388503916|gb|AFK40024.1| unknown [Medicago truncatula]
Length = 324
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 142/197 (72%), Gaps = 2/197 (1%)
Query: 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
N+++ L VFNLPWS S +IK+LF CGTV+DVEIIK K GK + + FVTM S E AQAA
Sbjct: 93 NVKKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAA 152
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
V++F+ E+SGRI+RVEFAK FKK + +E ++ +Y SNL+WK RSTHLR+ F
Sbjct: 153 VDKFNATEISGRILRVEFAKGFKK-PRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIF 211
Query: 196 SANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ NF PVS++VVF+ G+SAGYGFVS+ T+EEAEAAI +L GKEL+GRPL +K ++
Sbjct: 212 TENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAIFALQGKELLGRPLLVKISERK 271
Query: 255 DDVSESNKEEEDVSEDQ 271
+ S + EE V + Q
Sbjct: 272 VKEAGSEEVEEKVDDVQ 288
>gi|115460220|ref|NP_001053710.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|38346724|emb|CAE04874.2| OSJNBa0086O06.22 [Oryza sativa Japonica Group]
gi|113565281|dbj|BAF15624.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|215706340|dbj|BAG93196.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 291
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 145/201 (72%), Gaps = 6/201 (2%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
RRKLYV N+PWSF EI+ LFA CG V DVE+IK K GK + FAFVTMA+ EEA AAV
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ ++ +V GR IRVEF+K F+KP P +HKLYVSNL WK R+ +++EFFS
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILE--RHKLYVSNLPWKARAPNMKEFFS- 195
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
FNP+S+KVVF+S G+SAGYGFVSF TKEEAEAA++ LDGKELMGRP+RL++ Q DD
Sbjct: 196 KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWRQSVDDS 255
Query: 258 SESNK---EEEDVSEDQSAES 275
+S K E ED + D AE
Sbjct: 256 DDSVKADGEIEDANVDGEAEG 276
>gi|116311029|emb|CAH67960.1| OSIGBa0142I02-OSIGBa0101B20.3 [Oryza sativa Indica Group]
Length = 291
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 145/201 (72%), Gaps = 6/201 (2%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
RRKLYV N+PWSF EI+ LFA CG V DVE+IK K GK + FAFVTMA+ EEA AAV
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ ++ +V GR IRVEF+K F+KP P +HKLYVSNL WK R+ +++EFFS
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILE--RHKLYVSNLPWKARAPNMKEFFS- 195
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
FNP+S+KVVF+S G+SAGYGFVSF TKEEAEAA++ LDGKELMGRP+RL++ Q DD
Sbjct: 196 KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWRQSVDDS 255
Query: 258 SESNK---EEEDVSEDQSAES 275
+S K E ED + D AE
Sbjct: 256 DDSVKADGEIEDANVDGEAEG 276
>gi|326503644|dbj|BAJ86328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 118/249 (47%), Positives = 158/249 (63%), Gaps = 18/249 (7%)
Query: 33 LLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQN------IRRKLYVFNL 86
LLHS P Y P LCL + + + + + + RRKL+V N+
Sbjct: 33 LLHS----PRRPY--PGLRLCLPAAAVAASSPPDAQAAEPAAEGDEELGETRRKLFVGNM 86
Query: 87 PWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG 146
P++FS AE + LFA CG V DVE+IK K G+ R FAFVTMA+ EEA A V +FD +++G
Sbjct: 87 PFTFSAAETEKLFAECGVVKDVEVIKMKDGRKRGFAFVTMATAEEAAAVVEKFDGHDING 146
Query: 147 RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
R+I+VEF+K F+KP P S ++KLYVSNL+WK RS L+EFFS FNPVS+ +
Sbjct: 147 RVIKVEFSKSFRKPAPPSSPDTIV--AKYKLYVSNLAWKARSADLKEFFS-QFNPVSANI 203
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEED 266
VF+ +SAGYGFVSF TKEEAEAA+S L+GKELM RP+ L++ + + V +++ E E
Sbjct: 204 VFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWREDKETV-KADGEVEG 260
Query: 267 VSEDQSAES 275
V D AE
Sbjct: 261 VKVDDQAEG 269
>gi|326496905|dbj|BAJ98479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 142/198 (71%), Gaps = 6/198 (3%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
RRKL+V N+P++FS AE + LFA CG V DVE+IK K G+ R FAFVTMA+ EEA A V
Sbjct: 59 RRKLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKDGRKRGFAFVTMATAEEAAAVVE 118
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+FD +++GR+I+VEF+K F+KP P S ++KLYVSNL+WK RS L+EFFS
Sbjct: 119 KFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIV--AKYKLYVSNLAWKARSADLKEFFS- 175
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
FNPVS+ +VF+ +SAGYGFVSF TKEEAEAA+S L+GKELM RP+ L++ + + V
Sbjct: 176 QFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWREDKETV 233
Query: 258 SESNKEEEDVSEDQSAES 275
+++ E E V D AE
Sbjct: 234 -KADGEVEGVKVDDQAEG 250
>gi|357165665|ref|XP_003580455.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 1
[Brachypodium distachyon]
gi|357165668|ref|XP_003580456.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 2
[Brachypodium distachyon]
Length = 286
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/195 (53%), Positives = 136/195 (69%), Gaps = 6/195 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NLPW+ EI+ LFA CG V DV++IK K G+ R FAFVTM S EEA AAV +F+
Sbjct: 82 LYVANLPWTLPAVEIEKLFAECGVVKDVQVIKMKDGRKRGFAFVTMGSAEEAAAAVEKFN 141
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ +V GRII+VEF+K F+KP P R S +HKLYVSNL+WK RS+ ++ FFS FN
Sbjct: 142 SYDVMGRIIKVEFSKTFRKPAPPRIPSTIF--ARHKLYVSNLAWKARSSDIKAFFS-QFN 198
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
P+S+ VVF+ +SAGYGFVSF TKE+AEAA+S L+GKEL+ RP+ L++ V ++
Sbjct: 199 PISANVVFDDK--KSAGYGFVSFQTKEDAEAALSELNGKELLERPVLLRWRDDKGGV-KA 255
Query: 261 NKEEEDVSEDQSAES 275
+ E + V D AE
Sbjct: 256 DGEVQGVKVDDQAEG 270
>gi|225459201|ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|302142004|emb|CBI19207.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 135/216 (62%), Gaps = 22/216 (10%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAF 123
TV+T +++ R +L N+PW+ + +I++LF GTV+DVE+ H +NR AF
Sbjct: 74 TVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKTRNRGLAF 133
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK------L 177
++M SPEEA AA++ ++ E+ GR I+V +A KK P+ QHK L
Sbjct: 134 ISMGSPEEALAALSNLESYELEGRAIKVNYANPQKK--------KPSSPIQHKPVTPYNL 185
Query: 178 YVSNLSWKVRSTHLREFFSA-NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+++NL ++ R+ LREFFS+ N N VS++V+F N RS+GYGFVSF +KEEA+ A+SS
Sbjct: 186 FIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSSF 245
Query: 237 DGKELMGRPLRL----KFGQKNDDVSESNKEEEDVS 268
G+ MGRPLR+ +F ++ + +S+ + EDV+
Sbjct: 246 QGQMFMGRPLRVARSRRFVKRENKMSD---QTEDVA 278
>gi|147769276|emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
Length = 294
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 135/216 (62%), Gaps = 22/216 (10%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAF 123
TV+T +++ R +L N+PW+ + +I++LF GTV+DVE+ H +NR AF
Sbjct: 74 TVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKTRNRGLAF 133
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK------L 177
++M SPEEA AA++ ++ E+ GR I+V +A KK P+ QHK L
Sbjct: 134 ISMGSPEEALAALSNLESYELEGRAIKVNYANPQKK--------KPSSPIQHKPVTPYNL 185
Query: 178 YVSNLSWKVRSTHLREFFSA-NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+++NL ++ R+ LREFFS+ N N VS++V+F N RS+GYGFVSF +KEEA+ A+SS
Sbjct: 186 FIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSSF 245
Query: 237 DGKELMGRPLRL----KFGQKNDDVSESNKEEEDVS 268
G+ MGRPLR+ +F ++ + +S+ + EDV+
Sbjct: 246 QGQMFMGRPLRVARSRRFVKRENKMSD---QTEDVA 278
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 122/199 (61%), Gaps = 8/199 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
R +L N+PW + +++ LF G+VVDVE+ + +NR AFVTM S EEA +A+N
Sbjct: 72 RTRLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNSTRNRGLAFVTMGSEEEALSALN 131
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
++ ++ R I+V+F + KK SA P +H ++V NL+W+VRS HLRE F++
Sbjct: 132 HLNSTTLNDRTIKVDFTRSRKKQYVVPSAPMP----KHSVFVGNLTWRVRSRHLRELFAS 187
Query: 198 NFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
S +VVF + R SAGYGFVSF++KE AEAAIS+ +G +LMGR + + F DD
Sbjct: 188 TPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINVMF---KDD 244
Query: 257 VSESNKEEEDVSEDQSAES 275
++ NK ED AES
Sbjct: 245 NAKKNKSAAPTEEDLKAES 263
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 127/200 (63%), Gaps = 6/200 (3%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ +L N+PW + E++ LF G+VV VE+ + KNR AFVTM S EEA AA+
Sbjct: 70 KTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEALAALT 129
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
++ ++ R I+V+FA+ KK +P++ A ++ ++V NL+W+VR+ HLRE F++
Sbjct: 130 HLNSTILNDRKIKVDFARPRKK-QPKQPAVVSDDTEKYVVFVGNLTWRVRNRHLRELFAS 188
Query: 198 NFNPVSSKVVFESNEG-RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF----GQ 252
VS++V+F + RSAGY FVSF++KE A AAIS+ +GK LMGRP+ + F G+
Sbjct: 189 APGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINVMFKDENGE 248
Query: 253 KNDDVSESNKEEEDVSEDQS 272
KN+ S K E + S+DQS
Sbjct: 249 KNEPSSVPKKAEVEPSDDQS 268
>gi|125591465|gb|EAZ31815.1| hypothetical protein OsJ_15973 [Oryza sativa Japonica Group]
Length = 234
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/158 (57%), Positives = 114/158 (72%), Gaps = 6/158 (3%)
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVS 180
FAFVTMA+ EEA AAV + ++ +V GR IRVEF+K F+KP P +HKLYVS
Sbjct: 65 FAFVTMATAEEAAAAVEKLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILE--RHKLYVS 122
Query: 181 NLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240
NL WK R+ +++EFFS FNP+S+KVVF+S G+SAGYGFVSF TKEEAEAA++ LDGKE
Sbjct: 123 NLPWKARAPNMKEFFS-KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKE 181
Query: 241 LMGRPLRLKFGQKNDDVSESNK---EEEDVSEDQSAES 275
LMGRP+RL++ Q DD +S K E ED + D AE
Sbjct: 182 LMGRPVRLRWRQSVDDSDDSVKADGEIEDANVDGEAEG 219
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
R KLYV NLPW +K F+ + + GK+ + FV+ + EEA+AA+
Sbjct: 116 RHKLYVSNLPWKARAPNMKEFFSKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALT 175
Query: 138 QFDTQEVSGRIIRVEF 153
+ D +E+ GR +R+ +
Sbjct: 176 ELDGKELMGRPVRLRW 191
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 126/200 (63%), Gaps = 6/200 (3%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ +L N+PW + E++ LF G+VV VE+ + KNR AFVTM S EEA AA+
Sbjct: 70 KTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEALAALT 129
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
++ ++ R I+V+FA+ KK +P++ A ++ ++V NL+W+VR+ HLRE F++
Sbjct: 130 HLNSTILNDRKIKVDFARPRKK-QPKQPAVVSDATEKYVVFVGNLTWRVRNRHLRELFAS 188
Query: 198 NFNPVSSKVVFESNE-GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF----GQ 252
VS++V+F + RSAGY FVSF++KE A AAIS+ +GK LMGRP+ + F G+
Sbjct: 189 APGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINVMFKDENGE 248
Query: 253 KNDDVSESNKEEEDVSEDQS 272
KN+ S K E + S+ QS
Sbjct: 249 KNESSSVPKKAEVEPSDGQS 268
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 7/199 (3%)
Query: 59 TLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGK 117
TL ++ + + E TQ R+L+V NLP+S S +++ LF G VV VEI+ +
Sbjct: 92 TLLNSDLNQEAESTQS----RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNR 147
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASAPAR-ETQH 175
+R FAFVTM + E+A+ A+ FD V GR I+V F + R Q ++ ++ H
Sbjct: 148 SRGFAFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH 207
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K+Y NL W + S +LR+ F+ +S+KVV+E N G+S GYGFVSF T E+ E A+S+
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 236 LDGKELMGRPLRLKFGQKN 254
++G E+ GRPLRLK N
Sbjct: 268 MNGVEVQGRPLRLKLAVDN 286
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W + ++ FA ++ +++ + GK+R + FV+ + E+ + A++
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 139 FDTQEVSGRIIRVEFAKKFKKP 160
+ EV GR +R++ A +KP
Sbjct: 268 MNGVEVQGRPLRLKLAVDNRKP 289
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 126/201 (62%), Gaps = 4/201 (1%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E ++ R +L N+PW + E++ LF G+VV VE+ + KNR AFVTM S
Sbjct: 63 ETVEQVGPRTRLVAQNIPWDSTADEMRALFQTHGSVVGVELSMYSASKNRGLAFVTMGSE 122
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E+A AA+ ++ ++ R I+V+FA+ KK +P++ ++ ++V NL+W+VR+
Sbjct: 123 EDALAALTHLNSTILNDRKIKVDFARPRKK-QPKQPVVVSNPMEKYIVFVGNLTWRVRNR 181
Query: 190 HLREFFSANFNPVSSKVVFESNEG-RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
HLRE F++ +S++V+F + RSAGY FVSF++KE AEAAIS+ +GK LMGRP+ +
Sbjct: 182 HLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKILMGRPINV 241
Query: 249 KFGQKNDDVSESN--KEEEDV 267
+N +ES+ KEE +V
Sbjct: 242 MLKDENGKKNESSVPKEEAEV 262
>gi|297808953|ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
lyrata]
gi|297318197|gb|EFH48619.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
lyrata]
Length = 300
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 21/245 (8%)
Query: 13 LTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETK---- 68
LTNH SFS + LL+ ++ P S +RN +T QD +E+
Sbjct: 29 LTNHSLSFST------SSLCLLNHYSTFPD-SIPAKSRNFTTYFSTTTQDPVLESSSSSA 81
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
E +++ + +L N+PW+ + +I++LF G V+D+E+ HK +NR F+ MAS
Sbjct: 82 TEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGNVIDIEMSMHKKERNRGLVFIEMAS 141
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVE----FAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
P+EA A+ ++ + GR ++V+ KK PR + P+ L+V+NL++
Sbjct: 142 PDEAATALKSLESCDYEGRRLKVDYAKTKKKKTYAPREK-----PSPVPTFNLFVANLAF 196
Query: 185 KVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ R+ HL+EFF A+ N VS++V+F+ N RS+GYGFVSF TK++AEAA+ GK+ MG
Sbjct: 197 EARAKHLKEFFDADTGNVVSTEVIFQENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFMG 256
Query: 244 RPLRL 248
RP+RL
Sbjct: 257 RPIRL 261
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLF-APCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
L+V NL + +K F A G VV E+I + ++ + FV+ + ++A+AA+ +
Sbjct: 189 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFQENPRRSSGYGFVSFKTKKQAEAALIE 248
Query: 139 FDTQEVSGRIIRVEFAKKFKK 159
F ++ GR IR+ +K+F K
Sbjct: 249 FQGKDFMGRPIRLAKSKQFVK 269
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 118/210 (56%), Gaps = 4/210 (1%)
Query: 45 YNFPTRNLCLQ-VCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCG 103
Y+FP +L Q LQ T + N +L+V NLP+S +++ F G
Sbjct: 53 YHFPLSSLSFQDTQKPLQRETFQKPEPNASHTNQSSRLFVGNLPYSLLSSQLAQRFGEAG 112
Query: 104 TVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP 162
VV VEI+ ++R FAFVTM S E+A+ A+ FD E+ GRI++V F K+ +
Sbjct: 113 NVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMFDGSEIGGRIMKVNFTAIPKRGKR 172
Query: 163 QRSAS--APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGF 220
S ++ HK+Y NL W + S LR+ F+ +S+KV++E N GRS GYGF
Sbjct: 173 LVMGSNYRGFVDSPHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGF 232
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKF 250
VSF T E+ EAA++S++G E+ GRPLRL
Sbjct: 233 VSFETAEDVEAALNSMNGVEVQGRPLRLNL 262
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W + ++++ FA + ++I + G++R + FV+ + E+ +AA+N
Sbjct: 188 KIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNS 247
Query: 139 FDTQEVSGRIIRVEFA 154
+ EV GR +R+ A
Sbjct: 248 MNGVEVQGRPLRLNLA 263
>gi|22328520|ref|NP_192643.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|38603886|gb|AAR24688.1| At4g09040 [Arabidopsis thaliana]
gi|51968384|dbj|BAD42884.1| putative protein [Arabidopsis thaliana]
gi|51969486|dbj|BAD43435.1| putative protein [Arabidopsis thaliana]
gi|51969588|dbj|BAD43486.1| putative protein [Arabidopsis thaliana]
gi|51970774|dbj|BAD44079.1| putative protein [Arabidopsis thaliana]
gi|62319325|dbj|BAD94588.1| hypothetical protein [Arabidopsis thaliana]
gi|332657315|gb|AEE82715.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 304
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 144/252 (57%), Gaps = 27/252 (10%)
Query: 10 SIFLTNHPFSFSCLFPKLPHCIKLLHSS--NSTPSLSYNFPTRNLCLQVCSTLQDTTVET 67
++ TNH S S P L C H++ +S P+ S RNL +T Q+ +E+
Sbjct: 26 NVAFTNHSLSLST--PSL--CRLHRHATFPDSIPAKS-----RNLTSYFSTTTQEPVLES 76
Query: 68 K------PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
PE +++ + +L N+PW+ + +I++LF G+V+D+E+ HK +NR
Sbjct: 77 SSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGL 136
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVE----FAKKFKKPRPQRSASAPARETQHKL 177
F+ MASPEEA A+ ++ E GR ++V+ KK PR P+ L
Sbjct: 137 VFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPR-----ETPSPVPTFNL 191
Query: 178 YVSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+V+NL+++ R+ HL+EFF A+ N VS++V+F N RS+GYGFVSF TK++AEAA+
Sbjct: 192 FVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEF 251
Query: 237 DGKELMGRPLRL 248
GK+ +GRP+RL
Sbjct: 252 QGKDFLGRPIRL 263
>gi|449436976|ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449497014|ref|XP_004160289.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 300
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 7/224 (3%)
Query: 49 TRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDV 108
T Q ST QD V + P T++ + + +L N+PW + +I++LF GTV+DV
Sbjct: 71 TSTFVFQFASTSQDEAV-SSPSDTEEFS-QTRLLAQNVPWDSTPEDIRSLFEKYGTVLDV 128
Query: 109 EIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASA 168
E+ + +NR AFVTM SPEEA AA+N ++ E GR +R+ +AK K+ + S
Sbjct: 129 ELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE---KPSPPV 185
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+ L+V+NL + R+ L+EFF S + N VS++++F N RS+GYGFV+F TK+
Sbjct: 186 KPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKK 245
Query: 228 EAEAAISSLDGKELMGRPLRLKFGQKNDDV-SESNKEEEDVSED 270
+AEAAIS GK MGR LR+ ++ + SE + ED S D
Sbjct: 246 DAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTD 289
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 16/221 (7%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVT 125
T+P Q+ ++YV NLP++F+ AE+ ++F+ G+V DV+II K ++R FAFVT
Sbjct: 112 TRPALGQEPG---RIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVT 168
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFA-------KKFKKPRPQRSASAPARETQHKLY 178
MA+ EEA AV F+ + GR IRV F + +++ + +K+Y
Sbjct: 169 MATAEEAAKAVQMFNGALLGGRTIRVNFPEVPRGGERAVASAAAAKTSLRVVDDGTYKVY 228
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
NL W VR+ L+ F + S+V+FE + GRS G+GFVSF T E+A AAI ++DG
Sbjct: 229 AGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAMDG 288
Query: 239 KELMGRPLRLKFGQKNDDVSES-----NKEEEDVSEDQSAE 274
EL GRPLRL +N + K+EE S AE
Sbjct: 289 VELDGRPLRLSLASQNPPAGSTPSTVLPKQEETASNGSEAE 329
>gi|51969402|dbj|BAD43393.1| putative protein [Arabidopsis thaliana]
Length = 304
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 144/252 (57%), Gaps = 27/252 (10%)
Query: 10 SIFLTNHPFSFSCLFPKLPHCIKLLHSS--NSTPSLSYNFPTRNLCLQVCSTLQDTTVET 67
++ TNH S S P L C H++ +S P+ S RNL +T Q+ +++
Sbjct: 26 NVAFTNHSLSLST--PSL--CRLHRHATFPDSIPAKS-----RNLTSYFSTTTQEPVLDS 76
Query: 68 K------PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
PE +++ + +L N+PW+ + +I++LF G+V+D+E+ HK +NR
Sbjct: 77 SSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGL 136
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVE----FAKKFKKPRPQRSASAPARETQHKL 177
F+ MASPEEA A+ ++ E GR ++V+ KK PR P+ L
Sbjct: 137 VFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPR-----ETPSPVPTFNL 191
Query: 178 YVSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+V+NL+++ R+ HL+EFF A+ N VS++V+F N RS+GYGFVSF TK++AEAA+
Sbjct: 192 FVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEF 251
Query: 237 DGKELMGRPLRL 248
GK+ +GRP+RL
Sbjct: 252 QGKDFLGRPIRL 263
>gi|255645618|gb|ACU23303.1| unknown [Glycine max]
Length = 315
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 18/222 (8%)
Query: 44 SYNFP---------TRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAE 94
S++FP T NL ST + T E P ++++ R +L N+PW+ + +
Sbjct: 46 SFHFPRLSLITTKQTLNLTPTHASTSEQQTEE--PLVSEEEFSRTRLLAQNVPWTSTPED 103
Query: 95 IKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
I+ LF G V++VE+ +K +NR AFV M SPEEA A+N ++ E GR+I+V +A
Sbjct: 104 IRTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYA 163
Query: 155 KKFKKPRPQRSASAPARE--TQHKLYVSNLSWKVRSTHLREFFS-ANFNPVSSKVVFESN 211
+P+ +++A P + L+V+NLS++ S L+EFF VS++VV+ N
Sbjct: 164 ----RPKKEKTAPPPVKPKVVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDN 219
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
R +GYGFVSF +K+EAEAA++ GK MGRP+R+ G++
Sbjct: 220 PRRPSGYGFVSFKSKKEAEAALAEFQGKVFMGRPIRVDRGRR 261
>gi|356515764|ref|XP_003526568.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Glycine
max]
Length = 315
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 18/222 (8%)
Query: 44 SYNFP---------TRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAE 94
S++FP T NL ST + T E P ++++ R +L N+PW+ + +
Sbjct: 46 SFHFPRLSLITTKQTLNLTPTHASTSEQQTEE--PLVSEEEFSRTRLLAQNVPWTSTPED 103
Query: 95 IKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
I+ LF G V++VE+ +K +NR AFV M SPEEA A+N ++ E GR+I+V +A
Sbjct: 104 IRTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYA 163
Query: 155 KKFKKPRPQRSASAPARE--TQHKLYVSNLSWKVRSTHLREFFS-ANFNPVSSKVVFESN 211
+P+ +++A P + L+V+NLS++ S L+EFF VS++VV+ N
Sbjct: 164 ----RPKKEKTAPPPVKPKVVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDN 219
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
R +GYGFVSF +K+EAEAA++ GK MGRP+R+ G++
Sbjct: 220 PRRPSGYGFVSFKSKKEAEAALAEFQGKVFMGRPIRVDRGRR 261
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NLP++++ E+ +F+ G V D +II K ++R FAFVTMA+ EEA A+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFF 195
FD + GR RV + + + +R+ + R + +K+Y NL W VR+ LR F
Sbjct: 173 FDGALLGGRTARVNY-PEVPRGGERRTVTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVF 231
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ ++V+FE GRS G+GFVSF+T E+A+AA+ SLDG EL GRPLRL ++N
Sbjct: 232 EGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRPLRLSLAEQN 290
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
+ + PR + P + +L+V NL + S L + FS ++++++ R
Sbjct: 96 RAYSSPR----SRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNR 151
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-----GQKNDDVSESNKEEED 266
S G+ FV+ AT EEA AI DG L GR R+ + G + V+ S + +D
Sbjct: 152 SRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDD 208
>gi|356508060|ref|XP_003522779.1| PREDICTED: 30 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 297
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 138/244 (56%), Gaps = 18/244 (7%)
Query: 13 LTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT 72
L+ SFS L K PH S + PS S++FP +L + Q + P
Sbjct: 15 LSTQSTSFSFLR-KTPHS----QSIHIDPS-SFHFPRLSLITTTLTHAQ----QANPVVA 64
Query: 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEA 132
+++ R +L N+PW+ + +I++LF G V+ VE+ +K +NR AFV M SPEEA
Sbjct: 65 EEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMYKKNRNRGLAFVEMGSPEEA 124
Query: 133 QAAVNQFDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
A+N ++ E GR+I+V +A KK K P P + + L+V+NLS++ +
Sbjct: 125 LEALNNLESYEFEGRVIKVNYARPKKEKTPPPVK-----PKVVTFNLFVANLSYEASAKD 179
Query: 191 LREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+EFF S VS++VV+ N R +GYGFVS+ +K+EAEAA++ GK MGRP+R+
Sbjct: 180 LKEFFDSGTGKVVSAEVVYRDNPRRPSGYGFVSYKSKKEAEAALAEFQGKIFMGRPIRVD 239
Query: 250 FGQK 253
G++
Sbjct: 240 RGRR 243
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NLP++++ E+ +FA G V D +II K ++R FAFVTMA+ EEA A+
Sbjct: 111 RLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 170
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFF 195
FD + GR RV + + + +R+ + R + +K+Y NL W VR+ LR F
Sbjct: 171 FDGALLGGRTARVNY-PEVPRGGERRTVTMAGRRRDDGTYKIYAGNLGWGVRADTLRNVF 229
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ ++V+FE GRS G+GFVSF T E+A+AA+ +LDG EL GRPLRL ++
Sbjct: 230 EGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSLAEQ 287
>gi|217074252|gb|ACJ85486.1| unknown [Medicago truncatula]
Length = 213
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
N+++ L VFNLPWS S +IK+LF CGTV+DVEIIK K GK + + FVTM S E AQAA
Sbjct: 93 NVKKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAA 152
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
V++F+ E+SGRI+RVEFAK FKKP + +E ++ +Y SNL+WK RSTHLR+ F
Sbjct: 153 VDKFNATEISGRILRVEFAKGFKKP-RPPPPAPTPKEARYVIYASNLAWKARSTHLRDIF 211
Query: 196 S 196
+
Sbjct: 212 T 212
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L V NL W + +++ F + +++ +S +G+ GY FV+ + E A+AA+
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEII-KSKDGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 237 DGKELMGRPLRLKFGQ 252
+ E+ GR LR++F +
Sbjct: 157 NATEISGRILRVEFAK 172
>gi|224082053|ref|XP_002306558.1| predicted protein [Populus trichocarpa]
gi|222856007|gb|EEE93554.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 29/247 (11%)
Query: 42 SLSYN--FPTRN------LCLQVCSTLQD-------------TTVETKPEQTQKQNIRRK 80
SLS++ FP RN L ST QD T ++K E+ +++ + +
Sbjct: 46 SLSHSLCFPIRNNNKFRHFLLHFSSTTQDHPVVDSSSLDDVVTEYQSKAEEKEEEFSKTR 105
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+ N+PW+ + +I+ LF GTVVDVE+ + +NR AFVTM SPEEA AA+N +
Sbjct: 106 LFASNVPWNCTAEDIRALFQKFGTVVDVELSMYSKIRNRGLAFVTMGSPEEAVAALNNLE 165
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA-NF 199
+ E GR +++ +AK K + P L+V+NL ++ +S L+EFF A
Sbjct: 166 SYEFEGRTLKMNYAK--AKKKKPSPPPPPKPGPTFNLFVANLPFEAKSKDLKEFFIAEGA 223
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK-----FGQKN 254
N VS++++F N R +GYGFV+F TK+EA+ AIS+ KE MGR LR+ Q+
Sbjct: 224 NVVSAEIIFHDNPRRPSGYGFVAFKTKKEADYAISTFSDKEFMGRQLRVARSRQFVKQRK 283
Query: 255 DDVSESN 261
+D ++S+
Sbjct: 284 EDAAQSD 290
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLY+ NLP++ + +++ +FA G VV V++I K ++R FAFVTMA+ EEA+ A+
Sbjct: 116 KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 175
Query: 139 FDTQEVSGRIIRVEFA-------KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
FD ++ GR +RV F K+ PR RS+ ++ HK+Y NL W + S L
Sbjct: 176 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPR-IRSSYNKFVDSPHKIYAGNLGWGLTSQSL 234
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
R+ F +S+K++++ G+S G+GFVSF T E+AE+A+ S++G E+ GRPLRL
Sbjct: 235 RDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 294
Query: 252 QKNDDVS 258
+S
Sbjct: 295 AGQSPIS 301
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEE 131
+++ KLYV NLPW+ A++ + + GTV VE+I K G++R FAFVTMA+PE+
Sbjct: 38 EEEQFETKLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTMATPED 97
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFK-KPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
AQA +N D ++ GR ++V + + K KPR +RS R+ +KL+V NLSW
Sbjct: 98 AQAVINALDGTDMGGRPLKVNYPQSQKDKPRVERSERP--RDDANKLFVGNLSWGCDEAA 155
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L FFS V +KVVF+ + GRS G+GFV+ + A AAI +LDG EL GR LR+
Sbjct: 156 LYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIENLDGAELDGRRLRVNL 215
Query: 251 -GQK 253
G+K
Sbjct: 216 AGEK 219
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 167 SAPARETQH---KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+AP E + KLYV NL W S L E S + +V+++ GRS G+ FV+
Sbjct: 33 AAPVAEEEQFETKLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTM 92
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
AT E+A+A I++LDG ++ GRPL++ + Q D
Sbjct: 93 ATPEDAQAVINALDGTDMGGRPLKVNYPQSQKD 125
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 5/179 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NLP++++ E+ +F+ G V D +II K ++R FAFVTMA+ EEA A+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFF 195
FD + GR RV + + + +R+ + R + +K+Y NL W VR+ LR F
Sbjct: 173 FDGALLGGRTARVNY-PEVPRGGERRTVTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVF 231
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ ++V+FE GRS G+GFVSF+T E+A+AA+ SLDG EL GR LRL ++N
Sbjct: 232 EGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRSLRLSLAEQN 290
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
+ + PR + P + +L+V NL + S L + FS ++++++ R
Sbjct: 96 RAYSSPR----SRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNR 151
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-----GQKNDDVSESNKEEED 266
S G+ FV+ AT EEA AI DG L GR R+ + G + V+ S + +D
Sbjct: 152 SRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDD 208
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 7/180 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + +E+ LF GTV VEI+ + ++R FAFVTM S E+A+ A+
Sbjct: 109 RLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR------ETQHKLYVSNLSWKVRSTHLR 192
FD +V GR ++V F + K S ++ HK+Y NL W + S LR
Sbjct: 169 FDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQGLR 228
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F+ +S+KV++E + GRS G+GFVSF T E A AA+ ++G E+ GRPLRL +
Sbjct: 229 EAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVEVQGRPLRLNLAE 288
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 123/212 (58%), Gaps = 21/212 (9%)
Query: 54 LQVCSTLQDTTVETKPEQ--TQKQNI-----RRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
L+ +Q+ E+KPEQ + Q+ KLYV NLP+ + +F G V
Sbjct: 127 LEGIQAVQEEEPESKPEQESVEGQDYPPLPEGTKLYVGNLPFDIDSEGLAKMFDESGVVE 186
Query: 107 DVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
VE+I + G++R FAFVTM++ EEA+AA+ +F+ E+ GR +RV F + PR Q
Sbjct: 187 MVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEV---PRLQNG 243
Query: 166 ASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA 216
S PAR ++ HK+YV NL+W V S LRE + N + +KV+ + GRS
Sbjct: 244 RS-PARSPSNFGGFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSR 302
Query: 217 GYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
G+GFVSF+++ E EAA+S +DG E+ GR +R+
Sbjct: 303 GFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRV 334
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 14/186 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLP++F+ AE+ F+ G+V DV+II K ++R FAFVTMA+ EEA AV
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 168
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR----------ETQHKLYVSNLSWKVRS 188
F+ + GR +RV F + PR A A A + +K+Y NL W VR+
Sbjct: 169 FNGALLGGRTVRVNFPEV---PRGGERAVASAAVARTSLRVVDDGTYKVYAGNLGWGVRA 225
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ F V ++V+FE + GRS G+GFVSF T ++A+AA+ ++DG EL GRPLRL
Sbjct: 226 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 285
Query: 249 KFGQKN 254
+N
Sbjct: 286 SLAAQN 291
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 14/186 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLP++F+ AE+ F+ G+V DV+II K ++R FAFVTMA+ EEA AV
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 168
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR----------ETQHKLYVSNLSWKVRS 188
F+ + GR +RV F + PR A A A + +K+Y NL W VR+
Sbjct: 169 FNGALLGGRTVRVNFPEV---PRGGERAVASAAVARTSLRVVDDGTYKVYAGNLGWGVRA 225
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ F V ++V+FE + GRS G+GFVSF T ++A+AA+ ++DG EL GRPLRL
Sbjct: 226 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 285
Query: 249 KFGQKN 254
+N
Sbjct: 286 SLAAQN 291
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 123/212 (58%), Gaps = 21/212 (9%)
Query: 54 LQVCSTLQDTTVETKPEQ--TQKQNI-----RRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
L+ +Q+ E+KPEQ + Q+ KLYV NLP+ + +F G V
Sbjct: 135 LEGIQAVQEEEPESKPEQESVEGQDYPPLPEGTKLYVGNLPFDIDSEGLAKMFDESGVVE 194
Query: 107 DVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
VE+I + G++R FAFVTM++ EEA+AA+ +F+ E+ GR +RV F + PR Q
Sbjct: 195 MVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEV---PRLQNG 251
Query: 166 ASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA 216
S PAR ++ HK+YV NL+W V S LRE + N + +KV+ + GRS
Sbjct: 252 RS-PARSPSNFGGFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSR 310
Query: 217 GYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
G+GFVSF+++ E EAA+S +DG E+ GR +R+
Sbjct: 311 GFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRV 342
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 107/180 (59%), Gaps = 7/180 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + + + LF GTV VEI+ + ++R FAFVTM + E+A+ A+
Sbjct: 106 RLYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRM 165
Query: 139 FDTQEVSGRIIRVEF------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
FD +V GR ++V F ++ R++ ++ HK+Y NL W + S LR
Sbjct: 166 FDGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNSYRGFVDSPHKIYAGNLGWGLTSQGLR 225
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F+ +S+KV++E + GRS G+GFVSF T E A+AA+ ++G E+ GRPLRL +
Sbjct: 226 EAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGRPLRLNLAE 285
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 115/183 (62%), Gaps = 10/183 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + +++ +FA GTV +VEI+ + ++R FAFVTM S EEA+ A+
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HKLYVSNLSWKVRSTHL 191
FD +V GR ++V F + + + SA R T HKLYV+NLSW + S L
Sbjct: 170 FDGSQVGGRTVKVNF-PEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGL 228
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF- 250
R+ F+ +S+KV+++ + GRS G+GF++F++ E ++A+ +++ EL GRPLRL
Sbjct: 229 RDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEGRPLRLNVA 288
Query: 251 GQK 253
GQK
Sbjct: 289 GQK 291
>gi|145332989|ref|NP_001078360.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332657316|gb|AEE82716.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 244
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 110/174 (63%), Gaps = 10/174 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+L N+PW+ + +I++LF G+V+D+E+ HK +NR F+ MASPEEA A+
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 94
Query: 140 DTQEVSGRIIRVE----FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
++ E GR ++V+ KK PR P+ L+V+NL+++ R+ HL+EFF
Sbjct: 95 ESCEYEGRRLKVDYAKTKKKKTYAPR-----ETPSPVPTFNLFVANLAFEARAKHLKEFF 149
Query: 196 SANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
A+ N VS++V+F N RS+GYGFVSF TK++AEAA+ GK+ +GRP+RL
Sbjct: 150 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRL 203
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 111/188 (59%), Gaps = 8/188 (4%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
ET+ E Q + KLY NLP++ A++ + GT VE++ H+ G++R FAFV
Sbjct: 95 ETEGEADQVP-VNTKLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFV 153
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
TM+S E+ + + D + GRI+RV FA K P+P+ ET++KL++ NLSW
Sbjct: 154 TMSSIEDCETVIENLDGSQYMGRILRVNFADK---PKPKEPLYP---ETEYKLFIGNLSW 207
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
V S L + F N V ++V+++ G+S GYGFV ++TKEE E A+ SL+G EL GR
Sbjct: 208 SVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGVELEGR 267
Query: 245 PLRLKFGQ 252
LR+ +
Sbjct: 268 ALRVSLAE 275
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + V S L P +V++ GRS G+ FV+ ++ E+ E I +
Sbjct: 108 KLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIEN 167
Query: 236 LDGKELMGRPLRLKFGQK 253
LDG + MGR LR+ F K
Sbjct: 168 LDGSQYMGRILRVNFADK 185
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 114/183 (62%), Gaps = 10/183 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + +++ +FA GTV +VEI+ + ++R FAFVTM S EEA+ A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HKLYVSNLSWKVRSTHL 191
FD +V GR ++V F + + + SA R T HKLYV+NLSW + S L
Sbjct: 175 FDGSQVGGRTVKVNF-PEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGL 233
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF- 250
R+ F+ +S+KV+++ + GRS G+GF++F++ E +A+ +++ EL GRPLRL
Sbjct: 234 RDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
Query: 251 GQK 253
GQK
Sbjct: 294 GQK 296
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 104/177 (58%), Gaps = 7/177 (3%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAA 135
I KLY NLP++ A++ + GT VE++ + G++R FAFVTM++ E+ A
Sbjct: 111 INTKLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAV 170
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ D + GRI+RV F+ K P+P+ ET+HKL+V NLSW V S L E F
Sbjct: 171 IENLDGSQFMGRILRVNFSDK---PKPKEPLYP---ETEHKLFVGNLSWSVTSESLVEAF 224
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
N V ++V+++ GRS GYGFV +AT+ E E A+ SL+G EL GR +R+ Q
Sbjct: 225 QEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGVELEGRAMRVSLAQ 281
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + V S L P +V+++ + GRS G+ FV+ +T E+ A I +
Sbjct: 114 KLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIEN 173
Query: 236 LDGKELMGRPLRLKFGQK 253
LDG + MGR LR+ F K
Sbjct: 174 LDGSQFMGRILRVNFSDK 191
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 13/183 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
KLY+ NLPW A++ + G+V VE+I + G++R FAFVTMA+ E+A+ + +
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRP--------QRSASAP---ARETQHKLYVSNLSWKVR 187
D +V GR ++V F + K+ RP QRS AP AR+ +K++V NLSW V
Sbjct: 61 LDGHDVGGRPLKVSFPQS-KQNRPSFPRGEGYQRSERAPRPAARDDPNKVFVGNLSWGVD 119
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ L+E FS V ++VV++ GRS G+GFV+++ E +AAI SLDG E GR LR
Sbjct: 120 NGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDSLDGAEFDGRELR 179
Query: 248 LKF 250
+
Sbjct: 180 VNL 182
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 176 KLYVSNLSWKVRSTHL----REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
KLY+ NL W+ S L +EF S +V+++ GRS G+ FV+ AT+E+AE
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVEL----VEVIYDQESGRSRGFAFVTMATQEDAEN 56
Query: 232 AISSLDGKELMGRPLRLKFGQ 252
I LDG ++ GRPL++ F Q
Sbjct: 57 VIERLDGHDVGGRPLKVSFPQ 77
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NL W ++ LF+ G VVD ++ + G++R F FVT + E AA++
Sbjct: 108 KVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDS 167
Query: 139 FDTQEVSGRIIRVEFA 154
D E GR +RV A
Sbjct: 168 LDGAEFDGRELRVNLA 183
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 10/206 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NLP++ + EI F+ G V +V+II K ++R FAFVTMA+ EEA A+
Sbjct: 119 RLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQM 178
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-----KLYVSNLSWKVRSTHLRE 193
F+ + GR RV + + + ++A RE + K+Y NL W VR+ LR
Sbjct: 179 FNGALLGGRTARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRA 238
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F + ++V+FE + GRS G+GFVSF T E+A+AA+ +LDG EL GRPLRL ++
Sbjct: 239 AFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMAEQ 298
Query: 254 NDDVSE----SNKEEEDVSEDQSAES 275
N ++EEE SE AE+
Sbjct: 299 NPTAGSPSTVQSQEEETASESSDAET 324
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 109/180 (60%), Gaps = 9/180 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+Y+ NLP+S AE+ + G+V VE+I + G++R FAF TM+S E+A A V
Sbjct: 112 KVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDANALVEN 171
Query: 139 FDTQEVSGRIIRV----EFAKKFKKPRPQRSASAPARET----QHKLYVSNLSWKVRSTH 190
D + GR +RV E ++ + +S S +T QH++Y+ NLSW V
Sbjct: 172 LDGSQYGGRTLRVNLREEASRSLRVNLRDKSRSEQRNQTNNDGQHRVYIGNLSWDVNEEI 231
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L E FS + N + +K+VF+ GRS G+GF++F+T+ EAEAA++SL+GKEL GR +R+
Sbjct: 232 LNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKELEGRAMRVDL 291
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 60 LQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKN 118
L+D + + QT + ++Y+ NL W + + +F+ G ++D +I+ + G++
Sbjct: 198 LRDKSRSEQRNQTNNDG-QHRVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRS 256
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
R F F+T ++ EA+AAV + +E+ GR +RV+ A
Sbjct: 257 RGFGFITFSTQSEAEAAVASLNGKELEGRAMRVDLA 292
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 122/214 (57%), Gaps = 8/214 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
+ TQ +LYV NLP++ + +E+ +F GTVVDV+I+ K ++R F FVTM S
Sbjct: 107 QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS 166
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ------RSASAPARETQHKLYVSNL 182
EEA+ A+ F++ ++ GR ++V F + + + R + ++ HK+Y NL
Sbjct: 167 IEEAKGAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNL 226
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
W + S L++ F + +KV++E N GRS G+GF+SF + E ++A+++++G E+
Sbjct: 227 GWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 286
Query: 243 GRPLRLKFGQKNDDVSESNKE-EEDVSEDQSAES 275
GR LRL + + + S EE +E+ S ES
Sbjct: 287 GRALRLNLASEREKPTVSPPSVEEGETEEASLES 320
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAA 135
I KLY NLP++ A++ + T VE++ + G++R FAFVTM++ E+ +
Sbjct: 143 ITTKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQV 202
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ D SGR +RV FA K P+P+ ET+HKL+V NLSW V S L E F
Sbjct: 203 IKNLDGSLYSGRTMRVNFADK---PKPKLPLYP---ETEHKLFVGNLSWTVTSEMLTEMF 256
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR--LKFGQK 253
N V ++V+++ GRS GYGFV ++TKEE + A+SSL+G EL GR +R L G+K
Sbjct: 257 QKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLALGKK 316
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTM 126
KP+ KL+V NL W+ + + +F CG VV ++ + G++R + FV
Sbjct: 225 KPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCY 284
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
++ EE A++ + E+ GR IRV A
Sbjct: 285 STKEEMDEALSSLNGTELEGREIRVNLA 312
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAA 135
I KLY NLP++ A++ + T VE++ + G++R FAFVTM++ E+ +
Sbjct: 145 ITTKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQV 204
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ D SGR +RV FA K P+P+ ET+HKL+V NLSW V S L E F
Sbjct: 205 IKNLDGSLYSGRTMRVNFADK---PKPKLPLYP---ETEHKLFVGNLSWTVTSEMLTEMF 258
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR--LKFGQK 253
N V ++V+++ GRS GYGFV ++TKEE + A+SSL+G EL GR +R L G+K
Sbjct: 259 QKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLALGKK 318
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 28 PHCIKLLHSSNSTPSLSYNFPTRNL---CLQVCSTLQDTTV-----------ETKPEQTQ 73
P +++L+ + S + F T + C QV L + + KP+
Sbjct: 173 PEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKNLDGSLYSGRTMRVNFADKPKPKLPL 232
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEA 132
KL+V NL W+ + + +F CG VV ++ + G++R + FV ++ EE
Sbjct: 233 YPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEM 292
Query: 133 QAAVNQFDTQEVSGRIIRVEFA 154
A++ + E+ GR IRV A
Sbjct: 293 DEALSSLNGTELEGREIRVNLA 314
>gi|357465131|ref|XP_003602847.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
gi|355491895|gb|AES73098.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
Length = 290
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 7/224 (3%)
Query: 51 NLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI 110
N L+ ST + T EQT++ + R L N+PWS + ++++LF G V+ VE+
Sbjct: 64 NSTLRFASTSEQQV--TTQEQTEELSTTR-LLAQNVPWSSTTEDVRSLFEKYGKVLHVEL 120
Query: 111 IKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
+ +NR AFV M SPEEA A+N + E GRII +++AK K+ P P
Sbjct: 121 SMYNKNRNRGLAFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKP- 179
Query: 171 RETQHKLYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
+ L+V+N ++ RS ++EFF S VS++V+F N R +GYGFVS+ +K+EA
Sbjct: 180 --ITYNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEA 237
Query: 230 EAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 273
+ A++ GK MGRPLR+ ++ ++E + ED S + S
Sbjct: 238 DEALAEFQGKNFMGRPLRVAPSKRFVQLAEESAGSEDTSSELSV 281
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 131/249 (52%), Gaps = 24/249 (9%)
Query: 20 FSCLFPKLPHCIKLLH----SSNSTPSLSYNF-PTRNLCLQVCSTLQDT-----TVETKP 69
SC KL H LLH SSN T L +NF P + + S + T+ K
Sbjct: 8 LSCF--KLNHQPNLLHGCSKSSNQT-LLKFNFSPLKPFLISSRSGSRRFRVLPETINVKL 64
Query: 70 EQTQKQ-----NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAF 123
E+ +K I KLY NLP++ A + + VE++ ++ G++R FAF
Sbjct: 65 EEEEKDLDPPAAINTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAF 124
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
VTM++ E+ ++ D E GR ++V FA K P+P + P ET+HKL+V NLS
Sbjct: 125 VTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK---PKPNKEPLYP--ETEHKLFVGNLS 179
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W V S L E F + V ++VV++ + GRS GYGFV +++K E E A+ SLDG EL G
Sbjct: 180 WTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEG 239
Query: 244 RPLRLKFGQ 252
R +R+ Q
Sbjct: 240 RAIRVNLAQ 248
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P KLY NL + V S L + NP +V++ + G+S G+ FV+ + E+
Sbjct: 73 PPAAINTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED 132
Query: 229 AEAAISSLDGKELMGRPLRLKFGQK 253
I +LDG E +GR L++ F K
Sbjct: 133 CNIIIDNLDGTEYLGRALKVNFADK 157
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 122/214 (57%), Gaps = 8/214 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
+ TQ +LYV NLP++ + +E+ +F GTVVDV+I+ K ++R F FVTM S
Sbjct: 107 QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS 166
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ------RSASAPARETQHKLYVSNL 182
EEA+ A+ F++ ++ GR ++V F + + + R + ++ HK+Y NL
Sbjct: 167 IEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNL 226
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
W + S L++ F + +KV++E N GRS G+GF+SF + E ++A+++++G E+
Sbjct: 227 GWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 286
Query: 243 GRPLRLKFGQKNDDVSESNKE-EEDVSEDQSAES 275
GR LRL + + + S EE +E+ S ES
Sbjct: 287 GRALRLNLASEREKPTVSPPSVEEGETEEASLES 320
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 23/249 (9%)
Query: 8 ATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVET 67
++SI L ++P S S LL S +P S F RN+ + ++ T+E
Sbjct: 33 SSSIRLLSNPISISSF---------LLPSHRVSPPFSSRF-VRNVAVSSDYGQEEGTLEV 82
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTM 126
+ + KL+V NLP++ A++ LF G V VE+I K G++R F FVTM
Sbjct: 83 DGDDSSYAP-DLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTM 141
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR-------SASAPARETQHKLYV 179
++ E +AA QF+ E+ GR++RV + P P+R S +A + +++++V
Sbjct: 142 STVGEVEAAAQQFNGYELDGRLLRVNYGP----PPPKRDDSSFRGSRNASRFDNRNRVHV 197
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
SNL+W V L F N + +KVV++ + G+S G+GFV++ + EE AI SLDG
Sbjct: 198 SNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGV 257
Query: 240 ELMGRPLRL 248
+L GRP+R+
Sbjct: 258 DLDGRPIRV 266
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L F + +V+++ GRS G+GFV+ +T E EAA
Sbjct: 94 KLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQ 153
Query: 236 LDGKELMGRPLRLKFG---QKNDDVS 258
+G EL GR LR+ +G K DD S
Sbjct: 154 FNGYELDGRLLRVNYGPPPPKRDDSS 179
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
R +++V NL W ++NLF G V++ +++ + GK+R F FVT S EE A+
Sbjct: 192 RNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAI 251
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ + PR Q
Sbjct: 252 QSLDGVDLDGRPIRVTQAEA-RPPRRQ 277
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 114/189 (60%), Gaps = 9/189 (4%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEA 132
++ + K+YV NLPW+ A++ + + GTV VE+I K G++R FAFVTMAS ++A
Sbjct: 18 EEQLGSKVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAFVTMASHDDA 77
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFK-KPRPQRSASAPA------RETQHKLYVSNLSWK 185
QA +N D ++ GR ++V F + K KPR ++S + P R+ +KL+V N+ W
Sbjct: 78 QALINALDGSDMGGRALKVNFPQSQKDKPRFEKSEARPPTADRRPRDDPNKLFVGNIPWG 137
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ FS + V +K+V++ + GRS G+GFV+ +A+ A+ +LDG EL GR
Sbjct: 138 CDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAMENLDGTELDGRE 197
Query: 246 LRLKF-GQK 253
LR+ F G+K
Sbjct: 198 LRVNFAGEK 206
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 167 SAPARETQ--HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+AP E Q K+YV NL W S L E S + +V+++ GRS G+ FV+ A
Sbjct: 13 AAPVAEEQLGSKVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAFVTMA 72
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+ ++A+A I++LDG ++ GR L++ F Q D
Sbjct: 73 SHDDAQALINALDGSDMGGRALKVNFPQSQKD 104
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 114/181 (62%), Gaps = 13/181 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + +++ ++F G+V+ VEI+ + ++R FAFVTM S +EA+ A+
Sbjct: 104 RLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 163
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRP-QRSASAPA--------RETQHKLYVSNLSWKVRST 189
FD +V GR ++V F + PR +R+ P ++ +K+Y NLSW++ S
Sbjct: 164 FDGSQVGGRTVKVNFPEV---PRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSE 220
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F+ + + +KV++E GRS G+GF+SFA+ E AE+A+++++ E+ GRPLRL
Sbjct: 221 GLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRLN 280
Query: 250 F 250
Sbjct: 281 L 281
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P+ S SA A +LYV NL + + S+ L + F+ + +S ++V++ RS G+ FV
Sbjct: 94 PKVSDSAEA----SRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFV 149
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ + +EA+ AI DG ++ GR +++ F
Sbjct: 150 TMGSVQEAKEAIRMFDGSQVGGRTVKVNF 178
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W + +++ FA ++ ++I + + G++R F F++ AS E A++A+N
Sbjct: 207 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 266
Query: 139 FDTQEVSGRIIRVEFA 154
+ EV GR +R+ A
Sbjct: 267 MNEVEVEGRPLRLNLA 282
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 1/170 (0%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP++ AE+ LF GTV VE+I K G++R F FVTM+S EE +AA Q
Sbjct: 39 KIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAAQQ 98
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ E+ GR +RV P+ + + + ++++V NLSWKV L+ FS
Sbjct: 99 FNNYELDGRTLRVTEDSHKDMTLPRVESECDSFGSSNRVHVGNLSWKVDDDALKTLFSET 158
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V +KV+++ + GRS G+GFV++ + E AI SLDG +L GR +R+
Sbjct: 159 GDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESLDGVDLNGRSIRV 208
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
+++V NL W +K LF+ G VV+ ++I + G++R F FVT S E A+
Sbjct: 136 RVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIES 195
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D +++GR IRV A+ ++ P+
Sbjct: 196 LDGVDLNGRSIRVTAAEARQRRGPK 220
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 122/214 (57%), Gaps = 8/214 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
+ TQ +LYV NLP++ + +E+ +F GTVVDV+I+ K ++R F FVTM S
Sbjct: 99 QTTQASGEEWRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS 158
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ------RSASAPARETQHKLYVSNL 182
EEA+ A+ F++ ++ GR ++V F + + + R + ++ HK+Y NL
Sbjct: 159 IEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNL 218
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
W + S L++ F + +KV++E N GRS G+GF+SF + E ++A+++++G E+
Sbjct: 219 GWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 278
Query: 243 GRPLRLKFGQKNDDVSESNKE-EEDVSEDQSAES 275
GR LRL + + + S EE +E+ S ES
Sbjct: 279 GRALRLNLASEREKPTVSPPSVEEGETEEASLES 312
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 7/184 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E+ + + KLY NLP+S A++ + G+ VE++ ++ G++R FAFVTM+S
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E+ A + D E GR +RV F+ K P+P+ ET++KL+V NLSW V S
Sbjct: 162 VEDCNAVIENLDGSEYGGRTLRVNFSDK---PKPKLPLYP---ETEYKLFVGNLSWSVTS 215
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L + F N + ++V+++ GRS GYGFV ++TK E + A+ SL+G EL GR +R+
Sbjct: 216 ESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRI 275
Query: 249 KFGQ 252
Q
Sbjct: 276 SLAQ 279
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + S L +P +V++ + GRS G+ FV+ ++ E+ A I +
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 236 LDGKELMGRPLRLKFGQK 253
LDG E GR LR+ F K
Sbjct: 172 LDGSEYGGRTLRVNFSDK 189
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTM 126
KP+ KL+V NL WS + + +F G V+ ++ + G++R + FV
Sbjct: 191 KPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCY 250
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
++ E A+ + E+ GR IR+ A+
Sbjct: 251 STKAEMDTALESLNGVELEGRAIRISLAQ 279
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 107/188 (56%), Gaps = 7/188 (3%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFV 124
E E +++ R KLY NLP+S A++ L G+ VE++ + GK+R FAF
Sbjct: 104 ENGEEIVAEEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFA 163
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
TM E+ +A + D +E GR +RV F+ K P+ + S ET++KL++ NLSW
Sbjct: 164 TMTCVEDCKAVIENLDGKEFMGRTLRVNFSDK---PKAKESLYP---ETEYKLFIGNLSW 217
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
KV S L E F + V ++V+++ G S GYGFVS+A K E EAA++ ++ EL GR
Sbjct: 218 KVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVELEGR 277
Query: 245 PLRLKFGQ 252
LR+ Q
Sbjct: 278 ALRVSLAQ 285
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+T+ KLY NL + V S L + +V+++ + G+S G+ F + E+ +A
Sbjct: 114 DTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKA 173
Query: 232 AISSLDGKELMGRPLRLKFGQK 253
I +LDGKE MGR LR+ F K
Sbjct: 174 VIENLDGKEFMGRTLRVNFSDK 195
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E + + R KLY NLP+S A + L G+ +E++ + GK+R FAFVTM+
Sbjct: 104 ETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSC 163
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVR 187
E+ A + D +E GR +RV F+ K P+P+ P ET++KL+V NL+W V
Sbjct: 164 VEDCNAVIQNLDGKEFMGRTLRVNFSDK---PKPKE----PLYPETEYKLFVGNLAWTVT 216
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
S L + F + V ++V+F+ G+S GYGFVS+ATK E + A++ +D EL GR LR
Sbjct: 217 SESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLR 276
Query: 248 LKFGQ 252
+ Q
Sbjct: 277 VSLAQ 281
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+T+ KLY NL + V S L + +V+++ + G+S G+ FV+ + E+ A
Sbjct: 110 DTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNA 169
Query: 232 AISSLDGKELMGRPLRLKFGQK 253
I +LDGKE MGR LR+ F K
Sbjct: 170 VIQNLDGKEFMGRTLRVNFSDK 191
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 9 TSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTL- 60
T ++ N P+S S L L I++L+ ++ S + F T + C++ C+ +
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS-CVEDCNAVI 171
Query: 61 --------QDTTVET------KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
T+ KP++ KL+V NL W+ + + F GTVV
Sbjct: 172 QNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVV 231
Query: 107 DVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
++ + GK+R + FV+ A+ E A+ D E+ GR +RV A+
Sbjct: 232 GARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQ 281
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 133/267 (49%), Gaps = 35/267 (13%)
Query: 7 AATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPS---LSYNFPTRNLCL------QVC 57
AA+S+ L SC K H LLH N + + L +NF T L
Sbjct: 2 AASSVLL-------SCF--KSHHQPNLLHGCNYSSNQTLLRFNFSTPKPLLISSRSCSRR 52
Query: 58 STLQDTTVETKPEQTQKQN-----------IRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
+ T+ K E+ +K + + KLY NLP++ A + +
Sbjct: 53 FRVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPE 112
Query: 107 DVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
VE++ ++ G++R FAFVTM++ E+ ++ D E GR ++V FA K P+P +
Sbjct: 113 LVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK---PKPNKE 169
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT 225
P ET+HKL+V NLSW V S L F + V ++VVF+ + GRS GYGFV +++
Sbjct: 170 PLYP--ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQ 252
K E E A+ SLDG EL GR +R+ Q
Sbjct: 228 KAEMETALESLDGFELEGRAIRVNLAQ 254
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 156 KFKKPRPQRSASA---PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
K ++ ASA P KLY NL + V S L + NP +V++ +
Sbjct: 63 KLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDT 122
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
G+S G+ FV+ + E+ I +LDG E +GR L++ F K
Sbjct: 123 GQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK 163
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 112/181 (61%), Gaps = 13/181 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + +++ +F G+V+ VEI+ + ++R FAFVTM S +EA+ A+
Sbjct: 247 RLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 306
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRP-QRSASAPA--------RETQHKLYVSNLSWKVRST 189
FD +V GR ++V F + PR +R+ P ++ +K+Y NLSW++ S
Sbjct: 307 FDGSQVGGRTVKVNFPEV---PRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSE 363
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F+ + +KV++E GRS G+GF+SFA+ E AE+A++++B E+ GRPLRL
Sbjct: 364 GLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVEVEGRPLRLN 423
Query: 250 F 250
Sbjct: 424 L 424
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P+ S SA A +LYV NL + + S+ L F+ + +S ++V++ RS G+ FV
Sbjct: 237 PKVSDSAEAS----RLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFV 292
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ + +EA+ AI DG ++ GR +++ F
Sbjct: 293 TMGSVQEAKEAIRMFDGSQVGGRTVKVNF 321
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W + +++ FA ++ ++I + + G++R F F++ AS E A++A+N
Sbjct: 350 KIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 409
Query: 139 FDTQEVSGRIIRVEFA 154
B EV GR +R+ A
Sbjct: 410 MBEVEVEGRPLRLNLA 425
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 7/184 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E + + R KLY NLP+S A + L G+ +E++ + GK+R FAFVTM+
Sbjct: 206 ETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSC 265
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E+ A + D +E GR +RV F+ K P+P+ ET++KL+V NL+W V S
Sbjct: 266 VEDCNAVIQNLDGKEFMGRTLRVNFSDK---PKPKEPLYP---ETEYKLFVGNLAWTVTS 319
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L + F + V ++V+F+ G+S GYGFVS+ATK E + A++ +D EL GR LR+
Sbjct: 320 ESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRV 379
Query: 249 KFGQ 252
Q
Sbjct: 380 SLAQ 383
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+T+ KLY NL + V S L + +V+++ + G+S G+ FV+ + E+ A
Sbjct: 212 DTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNA 271
Query: 232 AISSLDGKELMGRPLRLKFGQK 253
I +LDGKE MGR LR+ F K
Sbjct: 272 VIQNLDGKEFMGRTLRVNFSDK 293
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 24/170 (14%)
Query: 9 TSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNLCLQVC-STL 60
T ++ N P+S S L L I++L+ ++ S + F T + C++ C + +
Sbjct: 215 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS-CVEDCNAVI 273
Query: 61 QDT--------------TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
Q+ + + KP++ KL+V NL W+ + + F GTVV
Sbjct: 274 QNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVV 333
Query: 107 DVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
++ + GK+R + FV+ A+ E A+ D E+ GR +RV A+
Sbjct: 334 GARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQ 383
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 141/267 (52%), Gaps = 32/267 (11%)
Query: 6 AAATSIFL--TNHPFSFSCLFPKLPHCIKLLHSSNSTP----SLSYNFP----------T 49
A+A+S+ L NHP + + K P+ + L S+++ SL +F
Sbjct: 4 ASASSLVLPSLNHPNTIKSFYSK-PNSLFFLSPSSTSSLKPVSLLLSFQHQQQPLSSRFL 62
Query: 50 RNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
+N+ + ++ + EQ+ Q++ KL+V NLP++ A + LF G V VE
Sbjct: 63 KNVAISSEFGQEEDFLSDGDEQSFSQDL--KLFVGNLPFNVDSARLAGLFETAGNVEMVE 120
Query: 110 IIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS- 167
+I K G++R F FVTM + EE +AA QF+ E+ GR +RV F P PQ+ +S
Sbjct: 121 VIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFG-----PPPQKESSF 175
Query: 168 ------APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
++ +++YV NLSW V + L F + +KVV++ + GRS G+GFV
Sbjct: 176 SRGPRGGETFDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFV 235
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRL 248
++++ EE + AI SL+G EL GR +R+
Sbjct: 236 TYSSAEEVDNAIDSLNGAELDGRAIRV 262
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 121/214 (56%), Gaps = 8/214 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
+ TQ +LYV NLP++ + +E+ LF G VVDV+I+ K ++R F FVTM +
Sbjct: 108 QTTQASGEEGRLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGT 167
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ------RSASAPARETQHKLYVSNL 182
EEA+ A+ F++ ++ GR ++V + + + R + ++ HK+Y NL
Sbjct: 168 IEEAKEAIQMFNSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNRSYVDSPHKIYAGNL 227
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
W + S L++ F + +KV++E N GRS G+GF+SF + E+ ++A+++++G E+
Sbjct: 228 GWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALATMNGVEVE 287
Query: 243 GRPLRLKFGQKNDDVSESNKE-EEDVSEDQSAES 275
GR LRL + + + S EE ++D S ES
Sbjct: 288 GRALRLNLASERERPTVSPPSVEEGETKDVSLES 321
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + +F G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 109 KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEM 168
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F+ ++SGR++ V A + + RPQR APA + YV NL W+V + L + FS
Sbjct: 169 FNRYDISGRLLNVNRASSRGTRMERPQRQ-FAPA----FRAYVGNLPWQVDDSRLVQLFS 223
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V +KVV++ GRS G+GFVS +KEE AIS+LDG+EL GRPLR+
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRV 275
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 67 TKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFV 124
T+ E+ Q+Q + YV NLPW + + LF+ G VVD +++ + G++R F FV
Sbjct: 189 TRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFV 248
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
+M S EE A++ D QE+ GR +RV A + RPQR
Sbjct: 249 SMVSKEELNDAISALDGQELDGRPLRVNVAAE----RPQRG 285
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 7/174 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP+S A++ L G+ +E++ + GK+R FAFVTM+ E+ A +
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D +E GR +RV F+ K K P ET+HKL+V NLSW V + L + F
Sbjct: 174 LDGKEYLGRTLRVNFSNKPKAKEPLYP------ETEHKLFVGNLSWSVTNEILTQAFQEY 227
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V ++V+++ GRS GYGFV F+TKEE EAA+ +L+ EL GR +R+ +
Sbjct: 228 GTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRAMRVSLAE 281
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + V S L + +V+++ + G+S G+ FV+ + E+ A I +
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 236 LDGKELMGRPLRLKFGQK 253
LDGKE +GR LR+ F K
Sbjct: 174 LDGKEYLGRTLRVNFSNK 191
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + +F G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 109 KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEM 168
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F ++SGR++ V A + + RPQR APA + YV NL W+V + L + FS
Sbjct: 169 FSRYDISGRLLNVNRASSRGTRMERPQRQ-FAPA----FRAYVGNLPWQVDDSRLVQLFS 223
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V +KVV++ GRS G+GFVS +KEE AIS+LDG+EL GRPLR+
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRV 275
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 67 TKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFV 124
T+ E+ Q+Q + YV NLPW + + LF+ G VVD +++ + G++R F FV
Sbjct: 189 TRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFV 248
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
+M S EE A++ D QE+ GR +RV A + RPQR
Sbjct: 249 SMVSKEELNDAISALDGQELDGRPLRVNVAAE----RPQRG 285
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 7/183 (3%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASP 129
+T + + KLY NLP++ A++ + G+ VE++ H+ G++R FAFVTM+S
Sbjct: 99 ETNEIPVNTKLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSI 158
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E+ A + D + GRI+RV F+ P+P+ ET++KL+V NLSW S
Sbjct: 159 EDCNAVIENLDESQYMGRILRVNFSDN---PKPKEPLYP---ETEYKLFVGNLSWSATSE 212
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L + F N V ++V+++ G+S GYGFV ++TK E + A+ SLDG EL GR LR+
Sbjct: 213 SLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVELEGRALRVS 272
Query: 250 FGQ 252
+
Sbjct: 273 LAE 275
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NLP+S A++ LF G+V VE+I K G++R F FVTM+S EE + AV+Q
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ + GR +RV + R RS P R +++YV NLSW V ++ L FS
Sbjct: 142 FNGYVLDGRSLRVNSGPPPPRDRSSRSPQRP-RGDANRVYVGNLSWGVDNSALANLFSEQ 200
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ ++++++ GRS G+GFV++ + EE E AIS+LDG +L GR +R+
Sbjct: 201 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 250
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W + + NLF+ G V++ II + G++R F FVT S EE + A++
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ K PR Q
Sbjct: 238 LDGADLDGRQIRVTVAES-KPPRQQ 261
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ ++ EE E A+
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 236 LDGKELMGRPLRLKFG 251
+G L GR LR+ G
Sbjct: 142 FNGYVLDGRSLRVNSG 157
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 4/170 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NLP+S A++ LF G+V VE+I K G++R F FVTM+S EE +AAV Q
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ + GR +RV PR Q S AP R +++YV NLSW V + L FS
Sbjct: 147 FNGYILDGRSLRVNSGPP--PPREQSSQRAP-RGEANRVYVGNLSWGVDNAALANLFSGE 203
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ +KV+++ GRS G+GFV++ + EE E A+S+LDG ++ GR +R+
Sbjct: 204 GEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRV 253
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 11 IFLTNHPFS-----FSCLFPKLP--HCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQD- 62
+F+ N PFS + LF + +++++ + S + F T + +V + ++
Sbjct: 88 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF 147
Query: 63 ---------TTVETKPEQTQKQNIRR-------KLYVFNLPWSFSVAEIKNLFAPCGTVV 106
V + P ++Q+ +R ++YV NL W A + NLF+ G V+
Sbjct: 148 NGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVL 207
Query: 107 DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ 163
+ ++I + G++R F FVT S EE + AV+ D ++ GR IRV A+ K PR Q
Sbjct: 208 EAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAES-KPPRRQ 264
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ ++ EE EAA+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 236 LDGKELMGRPLRLKFG 251
+G L GR LR+ G
Sbjct: 147 FNGYILDGRSLRVNSG 162
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 18/182 (9%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP++ A++ LF G V VE+I K G++R F FVTM+S +E +AA Q
Sbjct: 93 KLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQ 152
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQ---------HKLYVSNLSWKV 186
F+ E+ GR +RV P PQR +S +P ++LYV NLSW V
Sbjct: 153 FNGYELEGRALRVN-----SGPPPQRESSFSRSPRFGGGGGGGESLEGNRLYVGNLSWSV 207
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ L FFS V +KVV++ GRS G+GFV++++ EE E AI SL+G EL GR +
Sbjct: 208 DNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAI 267
Query: 247 RL 248
R+
Sbjct: 268 RV 269
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 4/170 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NLP+S A++ LF G+V VE+I K G++R F FVTM+S EE +AAV Q
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ + GR +RV PR Q S AP R +++YV NLSW V + L FS
Sbjct: 147 FNGYILDGRSLRVNSGPP--PPREQSSRRAP-RGEANRVYVGNLSWGVDNAALANLFSGE 203
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ +KV+++ GRS G+GFV++ + EE E A+S+LDG ++ GR +R+
Sbjct: 204 GEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRV 253
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 11 IFLTNHPFS-----FSCLFPKLP--HCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQD- 62
+F+ N PFS + LF + +++++ + S + F T + +V + ++
Sbjct: 88 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF 147
Query: 63 ---------TTVETKPEQTQKQNIRR-------KLYVFNLPWSFSVAEIKNLFAPCGTVV 106
V + P ++Q+ RR ++YV NL W A + NLF+ G V+
Sbjct: 148 NGYILDGRSLRVNSGPPPPREQSSRRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVL 207
Query: 107 DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ 163
+ ++I + G++R F FVT S EE + AV+ D ++ GR IRV A+ K PR Q
Sbjct: 208 EAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAES-KPPRRQ 264
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ ++ EE EAA+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 236 LDGKELMGRPLRLKFG 251
+G L GR LR+ G
Sbjct: 147 FNGYILDGRSLRVNSG 162
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 20/186 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP++ A++ LF G V VE+I K G++R F FVTM+S EEA+AA Q
Sbjct: 87 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 146
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--------------ETQHKLYVSNLSW 184
F+ E+ GR +RV P P R+ SAP +++++++VSNL+W
Sbjct: 147 FNGYELDGRALRVN-----SGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAW 201
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
V + L+ F N + ++V+++ GRS G+GFV+F++ +E +AI SL+G +L GR
Sbjct: 202 GVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGR 261
Query: 245 PLRLKF 250
+R+
Sbjct: 262 AIRVSL 267
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%)
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT 225
P+ KL+V NL + V S L E F + N +V+++ GRS G+GFV+ ++
Sbjct: 77 GDGPSFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSS 136
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFG 251
EEAEAA +G EL GR LR+ G
Sbjct: 137 VEEAEAAAQQFNGYELDGRALRVNSG 162
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NL W +K+LF G V++ +I + G++R F FVT +SP+E +A+
Sbjct: 193 RVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQS 252
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
+ +++GR IRV A KP+
Sbjct: 253 LNGVDLNGRAIRVSLAD--SKPK 273
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E+ + + KLY NLP+S A++ + G+ VE++ ++ G++R FAFVTM+S
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E+ A + D E GR +RV F+ K P+P+ ET++KL+V NLSW V S
Sbjct: 162 VEDCNAVIENLDGSEYGGRTLRVNFSDK---PKPKLPLYP---ETEYKLFVGNLSWSVTS 215
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L + F N + ++V+++ GRS GYGFV ++TK E + A+ SL+G EL GR +R+
Sbjct: 216 ESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRV 275
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + S L +P +V++ + GRS G+ FV+ ++ E+ A I +
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 236 LDGKELMGRPLRLKFGQK 253
LDG E GR LR+ F K
Sbjct: 172 LDGSEYGGRTLRVNFSDK 189
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 26/167 (15%)
Query: 9 TSIFLTNHPFSFSCLFPKL---------PHCIKLLHSSNSTPSLSYNFPTRNL---CLQV 56
T ++ N P+S C +L P +++L++ ++ S + F T + C V
Sbjct: 111 TKLYFGNLPYS--CDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAV 168
Query: 57 CSTLQDT-----------TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
L + + + KP+ KL+V NL WS + + +F G V
Sbjct: 169 IENLDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNV 228
Query: 106 VDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151
+ ++ + G++R + FV ++ E A+ + E+ GR IRV
Sbjct: 229 IGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRV 275
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP+S A++ L G+ +E++ + GK+R FAFVTM+ E+ A +
Sbjct: 111 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCIEDCNAVIEN 170
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D +E GR +RV F+ K P+P+ ET+HKL+V NLSW V + L + F
Sbjct: 171 LDGKEFLGRTLRVNFSSK---PKPKEPLYP---ETEHKLFVGNLSWSVTNEILTQAFQEY 224
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V ++V+++ GRS GYGFV ++T+ E EAA+++L+ EL GR +R+ Q
Sbjct: 225 GTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRAMRVSLAQ 278
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + V S L + +V+++ + G+S G+ FV+ + E+ A I +
Sbjct: 111 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCIEDCNAVIEN 170
Query: 236 LDGKELMGRPLRLKFGQK 253
LDGKE +GR LR+ F K
Sbjct: 171 LDGKEFLGRTLRVNFSSK 188
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 5 EAAATSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNLCLQVC 57
+++AT ++ N P+S S L I++L+ +S S + F T + C++ C
Sbjct: 106 DSSATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMS-CIEDC 164
Query: 58 STLQDT---------------TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPC 102
+ + + + + KP++ KL+V NL WS + + F
Sbjct: 165 NAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEY 224
Query: 103 GTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
GTVV ++ + G++R + FV ++ E +AAV + E+ GR +RV A+
Sbjct: 225 GTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRAMRVSLAQ 278
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 28/226 (12%)
Query: 47 FPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
F TR + L L+D VE + +++ KL+V NLP+S A + LF G V
Sbjct: 60 FSTR-VALSDFDQLEDD-VEVAEQPRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVE 115
Query: 107 DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF----AKK----F 157
VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV AK+ F
Sbjct: 116 IVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 175
Query: 158 KKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPV 202
R S+ R+ + +++YV NLSW V L+E FS N V
Sbjct: 176 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 235
Query: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R+
Sbjct: 236 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRV 281
>gi|388510586|gb|AFK43359.1| unknown [Lotus japonicus]
Length = 305
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 145/270 (53%), Gaps = 30/270 (11%)
Query: 8 ATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVET 67
+T + + PFSF +LP C+ + HS+ + N ST Q E
Sbjct: 51 STKLTFCHIPFSF-----RLP-CLSITHSTRA-----------NTLTFASSTTQQQQTE- 92
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
E T ++ +L N+PW+ + ++++LF GTV++VE+ + ++R AFV M+
Sbjct: 93 --EATTEEFSTTRLVAQNVPWTSTPEDVRSLFERYGTVLEVELSMYNKTRSRGLAFVEMS 150
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVR 187
SPEEA A+N+ ++ E GR++++ +A+ KK + L+V+NLS++
Sbjct: 151 SPEEALEALNKLESYEFEGRVLKLNYARPKKK--KAPPPVVQRKPVTFNLFVANLSYEAT 208
Query: 188 STHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
S LREFF S + VS++VVF + +S GYGFVSF +K+EA AA+S K MGR L
Sbjct: 209 SKDLREFFDSGSSQVVSAEVVFHEDPRKSTGYGFVSFKSKKEANAALSEFQEKTFMGRSL 268
Query: 247 RL----KFGQKNDDVSESNKEEEDVSEDQS 272
R+ +F Q + ES+ + ED S + S
Sbjct: 269 RVAPSKRFVQP---LEESSAKPEDTSTELS 295
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 28/226 (12%)
Query: 47 FPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
F TR + L L+D VE + +++ KL+V NLP+S A + LF G V
Sbjct: 59 FSTR-VALSGFDQLEDD-VEVAEQPRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVE 114
Query: 107 DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF----AKK----F 157
VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV AK+ F
Sbjct: 115 MVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 174
Query: 158 KKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPV 202
R S+ R+ + +++YV NLSW V L+E FS N V
Sbjct: 175 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 234
Query: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R+
Sbjct: 235 DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRV 280
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L F N +V+++ GRS G+GFV+ +TKEE EAA
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 236 LDGKELMGRPLRLKFG 251
+G E+ GR +R+ G
Sbjct: 148 FNGYEIDGRAIRVNAG 163
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 7/198 (3%)
Query: 58 STLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GG 116
++ ++ +++P KLY NLP++ A++ + + VE++ + G
Sbjct: 103 GAVEGSSQDSRPSVAASTTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRITG 162
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
++R FAFVTM + ++ + + D GR ++V FA + K P ET+HK
Sbjct: 163 RSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADRPKPKLPLYP------ETEHK 216
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V NLSW V S L E F N V ++V+++ GRS GYGFV ++TKEE + AISSL
Sbjct: 217 LFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISSL 276
Query: 237 DGKELMGRPLRLKFGQKN 254
+G EL GR +R+ N
Sbjct: 277 NGTELEGREIRVNLALGN 294
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 115 KVYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 174
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F+ ++SGR++ V A + + RP R APA + YV NL W+V + L + FS
Sbjct: 175 FNRYDISGRLLNVNRASPRGTRMERPPRQ-FAPA----FRAYVGNLPWQVDDSRLVQLFS 229
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V++ VV++ GRS G+GFV+ +KEE + AIS+LDG+EL GRPLR+
Sbjct: 230 EHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAISALDGQELDGRPLRV 281
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VV+ ++ + G++R F FVTM S EE A++
Sbjct: 209 RAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAISA 268
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 269 LDGQELDGRPLRVNVAAE----RPQRG 291
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 20/184 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+S A++ LF G+V VE++ + G++R F FVTM+S EEA AAV Q
Sbjct: 78 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 137
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--------------ETQHKLYVSNLSW 184
F+ GR +RV P P R SAP ++ +K+YV NL+W
Sbjct: 138 FNGYTFQGRPLRVNCG-----PPPPRDGSAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAW 192
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
V ++ L FS + +KV+++ + GRS G+GFV++ + EE AIS+LDG +L GR
Sbjct: 193 GVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISNLDGIDLDGR 252
Query: 245 PLRL 248
+R+
Sbjct: 253 QIRV 256
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL W + ++NLF+ G V+D ++I + G++R F FVT S EE A++
Sbjct: 184 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 243
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
D ++ GR IRV A+ KPR
Sbjct: 244 LDGIDLDGRQIRVTVAE--SKPR 264
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L F + +VV++ GRS G+GFV+ ++ EEA AA+
Sbjct: 78 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 137
Query: 236 LDGKELMGRPLRLKFG 251
+G GRPLR+ G
Sbjct: 138 FNGYTFQGRPLRVNCG 153
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 4/170 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NLP+S A++ LF G+V VE+I K G++R F FVTM+S +E +AAV Q
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVEQ 143
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ + GR +RV PR S P R +++YV NLSW V ++ L FS
Sbjct: 144 FNGYVLDGRSLRVNSGPP--PPRDPSSQRGP-RGDANRVYVGNLSWGVDNSALANLFSEQ 200
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ +++V++ GRS G+GFV++ + EE E AIS+LDG +L GR +R+
Sbjct: 201 GEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRV 250
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W + + NLF+ G V++ I+ + G++R F FVT S EE + A++
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ K PR Q
Sbjct: 238 LDGSDLDGRQIRVTVAES-KPPRRQ 261
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ ++ +E EAA+
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVEQ 143
Query: 236 LDGKELMGRPLRLKFG 251
+G L GR LR+ G
Sbjct: 144 FNGYVLDGRSLRVNSG 159
>gi|326507746|dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 102/161 (63%), Gaps = 11/161 (6%)
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
KNR AFVTM S EEA +A+ + ++ R I+V+FAK P+ ++ A A ++
Sbjct: 33 KNRGLAFVTMGSEEEALSALKNLNLSTLNDRTIKVDFAK----PKKKQPAVPSAPVEKNV 88
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE-GRSAGYGFVSFATKEEAEAAISS 235
++V NL+W+VRS HLRE F++ S +V+F + RSAGYGFVSF++KEEAEAAIS+
Sbjct: 89 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 148
Query: 236 LDGKELMGRPLRLKFGQ------KNDDVSESNKEEEDVSED 270
+GKELMGR + + F + K+ D E EE + SED
Sbjct: 149 FNGKELMGRSINVMFKEDTPKKNKSSDSEEGKLEEAESSED 189
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 26/168 (15%)
Query: 18 FSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVET---KPEQTQ- 73
+SF C PK + + + +LS +NL L STL D T++ KP++ Q
Sbjct: 24 WSFRCTVPKKNRGLAFVTMGSEEEALSA---LKNLNL---STLNDRTIKVDFAKPKKKQP 77
Query: 74 -------KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN--FAFV 124
++N+ ++V NL W ++ LFA V VE+I H R+ + FV
Sbjct: 78 AVPSAPVEKNV---VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFV 134
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE 172
+ +S EEA+AA++ F+ +E+ GR I V FK+ P+++ S+ + E
Sbjct: 135 SFSSKEEAEAAISTFNGKELMGRSINV----MFKEDTPKKNKSSDSEE 178
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 93 AEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151
+++ +F GTVV VE++ + ++R FAFVTM S ++A+ A+ FD +V GRI+RV
Sbjct: 4 SQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRV 63
Query: 152 EF------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK 205
F ++ R+ + ++ HK+Y NL W+V S L++ F+ VS+K
Sbjct: 64 NFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAK 123
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
V++E + GRS G+GFV+F T ++ EAA+ +++G E+ GR LRL
Sbjct: 124 VIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 168
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W S ++K++FA +V ++I + G++R F FVT + ++ +AA+
Sbjct: 94 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 153
Query: 139 FDTQEVSGRIIRVEFA 154
+ EV GR +R+ A
Sbjct: 154 MNGVEVQGRELRLNLA 169
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
S+ L E F VS +V+++ RS G+ FV+ + ++A+ AI DG ++ GR +R
Sbjct: 3 SSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVR 62
Query: 248 LKF 250
+ F
Sbjct: 63 VNF 65
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 12/174 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 109 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIEM 168
Query: 139 FDTQEVSGRIIRVEFA----KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
F+ ++SGR++ V A + ++P P++ ASA + YV NL W+ + L +
Sbjct: 169 FNRYDISGRLLNVNRAAQRGSRVERP-PRQFASA------FRAYVGNLPWQAEDSRLVQL 221
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
FS + +++ VV++ GRS G+GFV+ A+KEE + AIS+LDG+EL GRPLR+
Sbjct: 222 FSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISALDGQELDGRPLRV 275
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G V++ ++ + G++R F FVTMAS EE A++
Sbjct: 203 RAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISA 262
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 263 LDGQELDGRPLRVNVAAE----RPQRG 285
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 12/174 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 106 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 165
Query: 139 FDTQEVSGRIIRVEFA----KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
F+ ++SGR++ V A + ++P P+R AS+ + YV NL W+ + L +
Sbjct: 166 FNRYDISGRLLNVNRAAQRGSRVERP-PRRFASS------FRAYVGNLPWQAEDSRLVQM 218
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
FS + V++ +V++ GRS G+GFV+ A+KE+ ++AIS+LDG+E+ GRPLR+
Sbjct: 219 FSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + +F+ G VV+ I+ + G++R F FVTMAS E+ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 260 LDGQEMDGRPLRVNVAAE----RPQRG 282
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 4 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 63
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSWKVRSTHLREFFS 196
F+ ++SGR++ V A + + R +R P R+ + + YV NL W+ + L + FS
Sbjct: 64 FNRYDISGRLLNVNRAAQ-RGSRVER----PPRQFASSFRAYVGNLPWQAEDSRLVQLFS 118
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V++ VV++ GRS G+GFV+ A+KE+ ++AIS+LDG+E+ GRPLR+
Sbjct: 119 EHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 170
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 14/178 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+S A++ LF G+V VE++ + G++R F FVTM++ EEA AA+ Q
Sbjct: 22 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQ 81
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--------ETQHKLYVSNLSWKVRSTH 190
F+ GR +RV P P R AP ++ +KLYV NL+W V ++
Sbjct: 82 FNGYTFQGRPLRVN-----SGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNST 136
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L FS + +KV+++ GRS G+GFV++ + EE AIS+LDG +L GR +R+
Sbjct: 137 LENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRV 194
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NL W + ++NLF+ GTV+D ++I + G++R F FVT S EE A++
Sbjct: 122 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 181
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ KPR Q
Sbjct: 182 LDGVDLDGRQIRVTVAE--SKPRRQ 204
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + V S L F + +VV++ GRS G+GFV+ +T EEA AAI
Sbjct: 22 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQ 81
Query: 236 LDGKELMGRPLRLKFG 251
+G GRPLR+ G
Sbjct: 82 FNGYTFQGRPLRVNSG 97
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 14/178 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+S A++ LF G+V VE++ + G++R F FVTM++ EEA AAV Q
Sbjct: 76 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 135
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--------ETQHKLYVSNLSWKVRSTH 190
F+ GR +RV P P R AP ++ +KLYV NL+W V ++
Sbjct: 136 FNGYTFQGRPLRVN-----SGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNST 190
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L FS + +KV+++ GRS G+GFV++ + EE AIS+LDG +L GR +R+
Sbjct: 191 LENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRV 248
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NL W + ++NLF+ GTV+D ++I + G++R F FVT S EE A++
Sbjct: 176 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 235
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ KPR Q
Sbjct: 236 LDGVDLDGRQIRVTVAE--SKPRRQ 258
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + V S L F + +VV++ GRS G+GFV+ +T EEA AA+
Sbjct: 76 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 135
Query: 236 LDGKELMGRPLRLKFG 251
+G GRPLR+ G
Sbjct: 136 FNGYTFQGRPLRVNSG 151
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 14/178 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+S A++ LF G+V VE++ + G++R F FVTM++ EEA AAV Q
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--------ETQHKLYVSNLSWKVRSTH 190
F+ GR +RV P P R AP ++ +KLYV NL+W V ++
Sbjct: 141 FNGYTFQGRPLRVN-----SGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNST 195
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L FS + +KV+++ GRS G+GFV++ + EE AIS+LDG +L GR +R+
Sbjct: 196 LENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRV 253
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NL W + ++NLF+ GTV+D ++I + G++R F FVT S EE A++
Sbjct: 181 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 240
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ KPR Q
Sbjct: 241 LDGVDLDGRQIRVTVAE--SKPRRQ 263
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + V S L F + +VV++ GRS G+GFV+ +T EEA AA+
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 236 LDGKELMGRPLRLKFG 251
+G GRPLR+ G
Sbjct: 141 FNGYTFQGRPLRVNSG 156
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +++GR++ V A + + RP R APA + YV NL W+V + L + FS
Sbjct: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQ-FAPA----FRAYVGNLPWQVDDSRLLQLFS 131
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V++ VV++ GRS G+GFVS A+KEE + AIS+LDG+EL GRPLR+
Sbjct: 132 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VV+ ++ + G++R F FV+MAS EE A++
Sbjct: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 170
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 171 LDGQELDGRPLRVNVAAE----RPQRG 193
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +++GR++ V A + + RP R APA + YV NL W+V + L + FS
Sbjct: 188 LNRYDINGRLLNVNRAAPRGSRVERPPRQF-APA----FRAYVGNLPWQVDDSRLLQLFS 242
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V++ VV++ GRS G+GFVS A+KEE + AIS+LDG+EL GRPLR+
Sbjct: 243 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 294
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VV+ ++ + G++R F FV+MAS EE A++
Sbjct: 222 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 281
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 282 LDGQELDGRPLRVNVAAE----RPQRG 304
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +++GR++ V A + + RP R APA + YV NL W+V + L + FS
Sbjct: 189 LNRYDINGRLLNVNRAAPRGSRVERPPRQF-APA----FRAYVGNLPWQVDDSRLLQLFS 243
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V++ VV++ GRS G+GFVS A+KEE + AIS+LDG+EL GRPLR+
Sbjct: 244 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 295
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VV+ ++ + G++R F FV+MAS EE A++
Sbjct: 223 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 282
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 283 LDGQELDGRPLRVNVAAE----RPQRG 305
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NLP+S A++ LF G+V VE+I K G++R F FVTM+S EE + AV+Q
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 143
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ + GR +RV + R S P R +++YV NLSW V ++ L FS
Sbjct: 144 FNGYVLDGRSLRVNSGPPPPRDRSSPSPQRP-RGDANRVYVGNLSWGVDNSALANLFSEQ 202
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ ++++++ GRS G+GFV++ + EE E AIS+LDG +L GR +R+
Sbjct: 203 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 252
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W + + NLF+ G V++ II + G++R F FVT S EE + A++
Sbjct: 180 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 239
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ K PR Q
Sbjct: 240 LDGADLDGRQIRVTVAES-KPPRQQ 263
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ ++ EE E A+
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 143
Query: 236 LDGKELMGRPLRLKFG 251
+G L GR LR+ G
Sbjct: 144 FNGYVLDGRSLRVNSG 159
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NLP+S A++ LF G+V VE+I K G++R F FVTM+S EE + AV+Q
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ + GR +RV + R S P R +++YV NLSW V ++ L FS
Sbjct: 142 FNGYVLDGRSLRVNSGPPPPRDRSSPSPQRP-RGDANRVYVGNLSWGVDNSALANLFSEQ 200
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ ++++++ GRS G+GFV++ + EE E AIS+LDG +L GR +R+
Sbjct: 201 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 250
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W + + NLF+ G V++ II + G++R F FVT S EE + A++
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ K PR Q
Sbjct: 238 LDGADLDGRQIRVTVAES-KPPRQQ 261
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ ++ EE E A+
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 236 LDGKELMGRPLRLKFG 251
+G L GR LR+ G
Sbjct: 142 FNGYVLDGRSLRVNSG 157
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 106/172 (61%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 106 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 165
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSWKVRSTHLREFFS 196
F+ ++SGR++ V A + + R +R P R+ + + YV NL W+ + L + FS
Sbjct: 166 FNRYDISGRLLNVNRAAQ-RGSRVER----PPRQFASSFRAYVGNLPWQAEDSRLVQMFS 220
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V++ +V++ GRS G+GFV+ A+KE+ ++AIS+LDG+E+ GRPLR+
Sbjct: 221 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + +F+ G VV+ I+ + G++R F FVTMAS E+ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 260 LDGQEMDGRPLRVNVAAE----RPQRG 282
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 7/184 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E + + R KLY NLP+S A + L G+ +E++ + GK+R FAFVTM+
Sbjct: 104 ETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSC 163
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E+ A + D +E GR +RV F+ K P+P+ ET++KL+V NL+W V
Sbjct: 164 VEDCNAVIQNLDGKEFMGRTLRVNFSDK---PKPKEPLYP---ETEYKLFVGNLAWTVTF 217
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ F + V ++V+F+ G+ GYGFVS+ATK E + A++ +D EL GR LR+
Sbjct: 218 ESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAIMDNVELEGRTLRV 277
Query: 249 KFGQ 252
Q
Sbjct: 278 SLAQ 281
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+T+ KLY NL + V S L + +V+++ + G+S G+ FV+ + E+ A
Sbjct: 110 DTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNA 169
Query: 232 AISSLDGKELMGRPLRLKFGQK 253
I +LDGKE MGR LR+ F K
Sbjct: 170 VIQNLDGKEFMGRTLRVNFSDK 191
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 24/170 (14%)
Query: 9 TSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTL- 60
T ++ N P+S S L L I++L+ ++ S + F T + C++ C+ +
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS-CVEDCNAVI 171
Query: 61 --------QDTTVET------KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
T+ KP++ KL+V NL W+ + F GTVV
Sbjct: 172 QNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTFESFTQAFQEHGTVV 231
Query: 107 DVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
++ + GK R + FV+ A+ E A+ D E+ GR +RV A+
Sbjct: 232 GARVLFDGETGKFRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQ 281
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I +K G++R F FVTM++ EEA A+
Sbjct: 112 KVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAIEM 171
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F+ ++SGR++ V A + + RP R APA + YV NL W+ + L + FS
Sbjct: 172 FNRYDISGRLLNVNRASPRGTRMERPPRQ-FAPA----FRAYVGNLPWQADDSRLVQLFS 226
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
V++ VV++ GRS G+GFV+ +KEE + AIS+LDG+EL GRPLR+
Sbjct: 227 EYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELDGRPLRV 278
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VV+ ++ + G++R F FVTM S EE A++
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISA 265
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 266 LDGQELDGRPLRVNVAAE----RPQRG 288
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I +K G++R F FVTM++ EEA A+
Sbjct: 106 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAIET 165
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSWKVRSTHLREFFS 196
F+ +SGR++ V A + + R +R P R+ + + YV NL W+ + L + FS
Sbjct: 166 FNRYNISGRLLNVNRAAQ-RGSRVER----PPRQFASSFRAYVGNLPWQAEDSRLVQMFS 220
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ V++ +V++ GRS G+GFV+ A+KE+ ++AIS+LDG+E+ GRPLR+
Sbjct: 221 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 45 YNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT 104
YN R L + + + + VE P Q + YV NLPW + + +F+ G
Sbjct: 169 YNISGRLLNVNRAAQ-RGSRVERPPRQFASSF---RAYVGNLPWQAEDSRLVQMFSEHGE 224
Query: 105 VVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ 163
VV+ I+ + G++R F FVTMAS E+ +A++ D QE+ GR +RV A + RPQ
Sbjct: 225 VVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAE----RPQ 280
Query: 164 RS 165
R
Sbjct: 281 RG 282
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 9/179 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NLP+S + +E+ +F G V E+I + ++R F FVTM S EEA+ A+
Sbjct: 117 KLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRM 176
Query: 139 FDTQEVSGRIIRVEFA-------KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
F+ +V GR +RV F ++ +PR RS +++HK+Y NL W++ S L
Sbjct: 177 FNGSQVGGRTLRVNFPEVPRGGEREVMEPR-IRSGYKGFIDSEHKIYAGNLGWRLTSEGL 235
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ F+ +S+KV++E + GRS G+GFVSF + E AEAA+ +++G+E+ GRPLRL
Sbjct: 236 GDAFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEVDGRPLRLNL 294
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 13/195 (6%)
Query: 60 LQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKN 118
L + V PE+ RKLYV N+P + + E+ +FA GTVV E++ K G++
Sbjct: 54 LASSAVMEAPEELAT----RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRS 109
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE-----T 173
R F FVTM++ EE AA+ + EV GR I+V + F P ASAP E +
Sbjct: 110 RRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESF---LPNIDASAPESEPSFVDS 166
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
Q+K+YV NL+ KV + L+ FFS +S+ V +S GYGFV+F+++EE EAA+
Sbjct: 167 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAV 226
Query: 234 SSLDGKELMGRPLRL 248
S+ + EL G+ +R+
Sbjct: 227 STFNNTELEGQTIRV 241
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 20/184 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+S A++ LF G+V VE++ + G++R F FVTM+S EEA AAV Q
Sbjct: 79 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 138
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--------------ETQHKLYVSNLSW 184
F+ GR +RV P P R SAP ++ +K+YV NL+W
Sbjct: 139 FNGYTFQGRPLRVNCG-----PPPPRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAW 193
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
V ++ L FS + +KV+++ GRS G+GFV++ T E AIS+LDG +L GR
Sbjct: 194 GVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDGIDLDGR 253
Query: 245 PLRL 248
+R+
Sbjct: 254 QIRV 257
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL W + ++NLF+ G V+D ++I + G++R F FVT + E A++
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISN 244
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ KPR Q
Sbjct: 245 LDGIDLDGRQIRVTVAE--SKPRRQ 267
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L F + +VV++ GRS G+GFV+ ++ EEA AA+
Sbjct: 79 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 138
Query: 236 LDGKELMGRPLRLKFG 251
+G GRPLR+ G
Sbjct: 139 FNGYTFQGRPLRVNCG 154
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 9/177 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP++ A++ + + VE++ + G++R FAFVTM + ++ + +
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D GR ++V FA + P+P++ A P ET+HKL+V NLSW V S L E F
Sbjct: 177 LDGSLYGGRTMKVNFADR---PKPKQ-ALYP--ETEHKLFVGNLSWTVTSEMLTEAFGRC 230
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR--LKFGQK 253
V ++V+++ GRS GYGFV ++T+EE + A+SSL+G E+ GR +R L G+K
Sbjct: 231 GTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEMEGREMRVNLALGKK 287
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTM 126
KP+Q KL+V NL W+ + + F CGTVV ++ + G++R + FV
Sbjct: 196 KPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCY 255
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
++ EE A++ + E+ GR +RV A
Sbjct: 256 STREEMDEALSSLNGMEMEGREMRVNLA 283
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S A T KLY NL + S L +P +V+++ GRS G+ FV+ T
Sbjct: 108 SVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTV 167
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQK 253
++ E I +LDG GR +++ F +
Sbjct: 168 QDCELVIKNLDGSLYGGRTMKVNFADR 194
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 8/193 (4%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASP 129
Q +KQ +LYV NLP S +AE+ LF P GTV+ VE+ ++ + G +R FVTM S
Sbjct: 90 QLKKQPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSI 149
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR--PQRSASAPAR----ETQHKLYVSNLS 183
A+ A+ D ++ GR +RV+F+ R P+ +SAP + E+ K+YV NL+
Sbjct: 150 NSAKNAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLA 209
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W V+ LR+ FS VS++V+++ G++ YGF+SF++ +E +AA+ S +GK+ G
Sbjct: 210 WTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAAL-SFNGKDFRG 268
Query: 244 RPLRLKFGQKNDD 256
R L ++ G + +D
Sbjct: 269 RILVVRKGVERED 281
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 21/187 (11%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+S A + LF G V VE+I K G++R F FVTM+S EEA+AA Q
Sbjct: 90 KLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQ 149
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--------------ETQHKLYVSNLSW 184
F+ E+ GR +RV P P R+ SAP +++++++V NL+W
Sbjct: 150 FNGYELDGRSLRVN-----SGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVGNLAW 204
Query: 185 KVRSTHLREFFSANFNPV-SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
V L F V ++V+++ GRS G+GFV+F + +E ++AI SLDG +L G
Sbjct: 205 GVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNG 264
Query: 244 RPLRLKF 250
R +R+
Sbjct: 265 RAIRVSL 271
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%)
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT 225
P+ KL+V NL + V S L E F + N +V+++ GRS G+GFV+ ++
Sbjct: 80 GDGPSFSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSS 139
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFG 251
EEAEAA +G EL GR LR+ G
Sbjct: 140 VEEAEAAAKQFNGYELDGRSLRVNSG 165
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVN 137
+++V NL W +++LF G V++ +I + G++R F FVT SP+E ++A+
Sbjct: 196 RVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQ 255
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQR 164
D +++GR IRV A +P+R
Sbjct: 256 SLDGVDLNGRAIRVSLADS----KPKR 278
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 9/177 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP++ A++ + + VE++ + G++R FAFVTM + ++ + +
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D GR ++V FA + P+P++ A P ET+HKL+V NLSW V S L E F
Sbjct: 177 LDGSLYGGRTMKVNFADR---PKPKQ-ALYP--ETEHKLFVGNLSWTVTSEMLTEAFGRC 230
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR--LKFGQK 253
V ++V+++ GRS GYGFV ++T+EE + A+SSL+G E+ GR +R L G+K
Sbjct: 231 GTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEMEGREMRVNLALGKK 287
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTM 126
KP+Q KL+V NL W+ + + F CGTVV ++ + G++R + FV
Sbjct: 196 KPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCY 255
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
++ EE A++ + E+ GR +RV A
Sbjct: 256 STREEMDEALSSLNGMEMEGREMRVNLA 283
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S A T KLY NL + S L +P +V+++ GRS G+ FV+ T
Sbjct: 108 SVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTV 167
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQK 253
++ E I +LDG GR +++ F +
Sbjct: 168 QDCELVIKNLDGSLYGGRTMKVNFADR 194
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP++ A++ LF G+V VE++ + G++R F FVTM++ EE AAV Q
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-------------ARETQHKLYVSNLSWK 185
F+ GR +RV P P R AP + ++ +KLYV NLSW
Sbjct: 145 FNGYTFQGRPLRVN-----SGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKLYVGNLSWG 199
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V ++ L FS + +KV+++ + GRS G+GFV++ + +E AIS+LDG +L GR
Sbjct: 200 VDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQ 259
Query: 246 LRL 248
+R+
Sbjct: 260 IRV 262
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NL W + ++NLF+ G V+D ++I + G++R F FVT S +E A++
Sbjct: 190 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 249
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR-PQR 164
D ++ GR IRV A+ KPR P+R
Sbjct: 250 LDGVDLDGRQIRVTVAE--SKPREPRR 274
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L F + +VV++ GRS G+GFV+ +T EE AA+
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 236 LDGKELMGRPLRLKFG 251
+G GRPLR+ G
Sbjct: 145 FNGYTFQGRPLRVNSG 160
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I +K G++R F FVTM++ EEA A+
Sbjct: 112 KVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAIEM 171
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F+ ++SGR++ V A + + RP R APA + YV NL W+ + L + FS
Sbjct: 172 FNRYDISGRLLNVNRASPRGTRMERPPRQ-FAPA----FRAYVGNLPWQADDSRLVQLFS 226
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
V++ VV++ GRS G+GFV+ +KEE + AIS+LDG+EL GRPLR+
Sbjct: 227 EYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELDGRPLRV 278
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VV+ ++ + G++R F FVTM S EE A++
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISA 265
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 266 LDGQELDGRPLRVNVAAE----RPQRG 288
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 103/183 (56%), Gaps = 19/183 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP++ A++ LF G+V VE++ + G++R F FVTM S EE AAV Q
Sbjct: 88 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 147
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-------------ARETQHKLYVSNLSWK 185
F+ GR +RV P P R AP + ++ +KLYV NLSW
Sbjct: 148 FNGYTFQGRPLRVN-----SGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVGNLSWG 202
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V ++ L FS + +KV+++ + GRS G+GFV++ + +E AIS+LDG +L GR
Sbjct: 203 VDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQ 262
Query: 246 LRL 248
+R+
Sbjct: 263 IRV 265
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 106/174 (60%), Gaps = 5/174 (2%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + + E+ +FA GTV E++ K G++R F FVTM++PEEA AA+
Sbjct: 70 RKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIE 129
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREF 194
+ EV GR I+V + F P RSA P ++Q+K+YV NL+ V + L+ F
Sbjct: 130 SLNETEVGGRKIKVNVTESFL-PNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNF 188
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
FS +S+ V +S GYGFV+F+++EE +AA+S+ + EL G+P+R+
Sbjct: 189 FSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
AP KLYV N+ V + L F+ + ++V+F+ GRS +GFV+ +T E
Sbjct: 63 APEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPE 122
Query: 228 EAEAAISSLDGKELMGRPLRL 248
EA AAI SL+ E+ GR +++
Sbjct: 123 EANAAIESLNETEVGGRKIKV 143
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 9/176 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + + E++ +FA GTV+ +++ K G++R F FVTM+S EEA AA+
Sbjct: 69 RKLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSVEEANAAIE 128
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE-----TQHKLYVSNLSWKVRSTHLR 192
+ EV GR I+V + F P SAP E +Q+K+YV NL+ V + L+
Sbjct: 129 SLNETEVGGRKIKVNVTESF---LPNIDPSAPEPEPAFVDSQYKVYVGNLAKTVTTEVLK 185
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
FFS +S+ V +S GYGFV+F+++EE EAA+S+ + EL G+P+R+
Sbjct: 186 NFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTELEGQPIRV 241
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
AP KLYV N+ V + LR F+ + + + V+++ GRS +GFV+ ++ E
Sbjct: 62 APEELATRKLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSVE 121
Query: 228 EAEAAISSLDGKELMGRPLRL 248
EA AAI SL+ E+ GR +++
Sbjct: 122 EANAAIESLNETEVGGRKIKV 142
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 25/189 (13%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NLP++ + A++ +LF G V VE+ K G++R F FVTM++ EE +AA Q
Sbjct: 92 QLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQ 151
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARE----------------TQHKLYV 179
F+ E+ GR +RV P PQR S P RE + +++YV
Sbjct: 152 FNGYELDGRPLRVN-----SGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSNRVYV 206
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NLSW V + L F + +KVV++ + GRS G+GFV++++ EE E A+ SL+G
Sbjct: 207 GNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGA 266
Query: 240 ELMGRPLRL 248
EL GR +R+
Sbjct: 267 ELDGRAIRV 275
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P+ +L+V NL + V S L + F + N +V ++ GRS G+GFV+ +T EE
Sbjct: 85 PSFSPDLQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEE 144
Query: 229 AEAAISSLDGKELMGRPLRLKFG 251
EAA +G EL GRPLR+ G
Sbjct: 145 VEAASQQFNGYELDGRPLRVNSG 167
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP++ ++ LF G V+DV II + G +R F FVTM + EEA+ V
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F+ + GR++ V A + K RP ++ S + +K+YV NL W+ L + FS
Sbjct: 174 FNRHSLEGRLLTVNKAAPRGTKVERPSQAGS-----STNKIYVGNLPWQADDNSLLQLFS 228
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ + ++VV++ GRS G+GFV+++++ E AI++LDG ++ GRPLR+ +
Sbjct: 229 EHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAE 284
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLPW + LF+ G V++ ++ + G++R F FVT +S E A+
Sbjct: 208 KIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAA 267
Query: 139 FDTQEVSGRIIRVEFAKKFKK 159
D ++ GR +RV A+ ++
Sbjct: 268 LDGTDMDGRPLRVNIAEDRRR 288
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 7/178 (3%)
Query: 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQA 134
++ KLY NLP+S A++ L G+ +E++ + GK+R FAFVTM+ E+
Sbjct: 98 SVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNT 157
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ D +E GR +RV + K P+P+ ET+HKL+V NLSW V S L +
Sbjct: 158 VIENLDGKEFLGRTLRVNLSDK---PKPKEPLYP---ETEHKLFVGNLSWTVTSESLIQV 211
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F V ++V+++ GRS GYGFV ++ + E E A+ SL+ EL GR +R+ +
Sbjct: 212 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + V S L + +V+++ + G+S G+ FV+ + E+ I +
Sbjct: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
Query: 236 LDGKELMGRPLRLKFGQK 253
LDGKE +GR LR+ K
Sbjct: 162 LDGKEFLGRTLRVNLSDK 179
>gi|414883567|tpg|DAA59581.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 385
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 49/223 (21%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NLP++++ E+ +F+ G V D +II K ++R FAFVTMA+ EEA A+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 139 FD--------------------------------------------TQEVSGRIIRVEFA 154
FD Q + GR RV +
Sbjct: 173 FDGAVSTAPANWISTSTPHRIGILLLPMNVQACVLTSDRSLAHSSPMQLLGGRTARVNY- 231
Query: 155 KKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN 211
+ + +R+ + R + +K+Y NL W VR+ LR F + ++V+FE
Sbjct: 232 PEVPRGGERRTVTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERE 291
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
GRS G+GFVSF+T E+A+AA+ SLDG EL GR LRL ++N
Sbjct: 292 TGRSRGFGFVSFSTAEDAQAALESLDGVELEGRSLRLSLAEQN 334
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W ++N+F ++D +I + + G++R F FV+ ++ E+AQAA+
Sbjct: 256 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 315
Query: 139 FDTQEVSGRIIRVEFAKKFKKP-RPQRSASAPARET 173
D E+ GR +R+ A++ P P +A A ET
Sbjct: 316 LDGVELEGRSLRLSLAEQNPPPGSPPSTAQAQQEET 351
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
+ + PR + P + +L+V NL + S L + FS ++++++ R
Sbjct: 96 RAYSSPR----SRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNR 151
Query: 215 SAGYGFVSFATKEEAEAAISSLDG 238
S G+ FV+ AT EEA AI DG
Sbjct: 152 SRGFAFVTMATAEEAAKAIQMFDG 175
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP++ ++ LF G V+DV II + G +R F FVTM + EEA+ V
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F+ + GR++ V A + K RP ++ S + +K+YV NL W+ L + FS
Sbjct: 174 FNRHSLEGRLLTVNKAAPRGTKVERPSQAGS-----STNKIYVGNLPWQADDNSLLQLFS 228
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ + ++VV++ GRS G+GFV+++++ E AI++LDG ++ GRPLR+ +
Sbjct: 229 EHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAE 284
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLPW + LF+ G V++ ++ + G++R F FVT +S E A+
Sbjct: 208 KIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAA 267
Query: 139 FDTQEVSGRIIRVEFAKKFKK 159
D ++ GR +RV A+ ++
Sbjct: 268 LDGTDMDGRPLRVNIAEDRRR 288
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 19/183 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+S A + LF G V VE+I K G++R F FVTM+S E +AA Q
Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQ 159
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRP-------------QRSASAPARETQHKLYVSNLSWK 185
F+ E+ GR +RV P P Q + ++ +++YV NL+W
Sbjct: 160 FNGYEIDGRALRVN-----SGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWS 214
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V L FS V +KVV++ + GRS G+GFV++++ +E AI SLDG +L GR
Sbjct: 215 VDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRA 274
Query: 246 LRL 248
+R+
Sbjct: 275 IRV 277
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL WS +++ LF+ G VVD +++ + G++R F FVT +S +E A+
Sbjct: 205 RVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIES 264
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ + PR Q
Sbjct: 265 LDGVDLGGRAIRVSPAEA-RPPRRQ 288
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + V S L E F + +V+++ GRS G+GFV+ ++KE EAA
Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQ 159
Query: 236 LDGKELMGRPLRLKFG 251
+G E+ GR LR+ G
Sbjct: 160 FNGYEIDGRALRVNSG 175
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 105/177 (59%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 117 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 176
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F +V+GR++ V A + + RP R + + ++YV NL W+V + L E FS
Sbjct: 177 FHRYDVNGRLLTVNKAAPRGARVERPPRDSG-----SSFRIYVGNLPWQVDDSRLVELFS 231
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V +KVV++ + GRS G+GFV+ A++EE + AI++LDG+ L GR LR+ ++
Sbjct: 232 EHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 288
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 7/174 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP+S +++ + G +E++ + GK+R FAFVTM+S E+ +
Sbjct: 103 KLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIEN 162
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D GRI+RV F+ K P+P+ ET++KL+V NLSW V S L + F
Sbjct: 163 LDGSAYMGRILRVNFSDK---PKPKEPLYP---ETEYKLFVGNLSWSVTSEILTQAFQEY 216
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
N V ++V+++ G+S GYGFVS++TK E E A+ +++ EL GR +R+ +
Sbjct: 217 GNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAE 270
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 4 LEAAATSIFLTNHPFS-----FSCLFPK--LPHCIKLLHSSNSTPSLSYNFPTRNL---C 53
+E+ +T ++ N P+S + + + I++L+ N+ S + F T + C
Sbjct: 97 VESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDC 156
Query: 54 LQVCSTLQDTTV-----------ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPC 102
+V L + + KP++ KL+V NL WS + + F
Sbjct: 157 NKVIENLDGSAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEY 216
Query: 103 GTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
G VV +I + GK+R + FV+ ++ E + A+ + E+ GR+IRV A+
Sbjct: 217 GNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAE 270
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+P KLY NL + V S+ L +V+++ N G+S G+ FV+ ++ E
Sbjct: 95 SPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIE 154
Query: 228 EAEAAISSLDGKELMGRPLRLKFGQK 253
+ I +LDG MGR LR+ F K
Sbjct: 155 DCNKVIENLDGSAYMGRILRVNFSDK 180
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 9/179 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NLP+S + +E+ +F G V E+I + ++R F FVTM S EEA+ A+
Sbjct: 114 KLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQM 173
Query: 139 FDTQEVSGRIIRVEFA-------KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
F+ + GR +RV F ++ PR Q S +++HK+Y NL W++ S L
Sbjct: 174 FNGTQFGGRSVRVNFPEVPRGGEREVMGPRIQ-SGYKGFIDSEHKIYAGNLGWRLTSEGL 232
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
R+ F+ +S+KV++E + RS G+GFVSF + E AEAA+ +++G+E+ GRP+RL
Sbjct: 233 RDAFANQPGVLSAKVIYERDSRRSRGFGFVSFESAENAEAALEAMNGEEVEGRPMRLNL 291
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 102/185 (55%), Gaps = 17/185 (9%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLPWS AE+ LF G V VE+I + G++R FAFVTMA+ +A AV +
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-----------ETQHKLYVSNLSWKVR 187
F+ E GR +RV P P + + AP + ++++V NL W
Sbjct: 174 FNGYEYQGRTLRVN-----SGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGAD 228
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L + FS + + +KVV++ GRS G+GFV+ ++ +E E AISSLDG ++ GR ++
Sbjct: 229 DLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSDMDGRQIK 288
Query: 248 LKFGQ 252
+ +
Sbjct: 289 VTLAE 293
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQA 134
N +++V NLPW ++ LF+ G V++ +++ + G++R F FVT++SP+E +
Sbjct: 213 NSANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEE 272
Query: 135 AVNQFDTQEVSGRIIRVEFAK 155
A++ D ++ GR I+V A+
Sbjct: 273 AISSLDGSDMDGRQIKVTLAE 293
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 15/247 (6%)
Query: 6 AAATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQ-VCSTLQDTT 64
A+AT I+ P PKLP SN + LS+ P L + V ST
Sbjct: 10 ASATRIYKPTSP-------PKLPPS----RLSNISMPLSHPCPVSALRRKRVFSTKAQVQ 58
Query: 65 VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAF 123
V+ + +++ I R+LYV N+P + + E+ +F CG V E++ K K +R FAF
Sbjct: 59 VQEAVQGGKQKEIERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAF 118
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSN 181
VTM++ E+AQAA+ + + E+ GR+I+V +K + A ++ +K+YV N
Sbjct: 119 VTMSTVEDAQAAIEKMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFIDSPYKVYVGN 178
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
L+ V + L++ F+ N + +KV G+S GYGFVSF+++ + EAAIS+ + L
Sbjct: 179 LAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVL 238
Query: 242 MGRPLRL 248
G+P+R+
Sbjct: 239 EGKPMRV 245
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%)
Query: 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230
+E + +LYV N+ + L + F N ++V+++ RS + FV+ +T E+A+
Sbjct: 69 KEIERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQ 128
Query: 231 AAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEED 266
AAI ++G E+ GR +++ +K DVS N+ E+
Sbjct: 129 AAIEKMNGTEIGGRVIKVNITEKPLDVSGLNRLTEE 164
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 105/168 (62%), Gaps = 13/168 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + +++ +FA GTV +VEI+ + ++R FAFVTM S EEA+ A+
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRP--QRSASAPARETQ-------HKLYVSNLSWKVRST 189
FD +V GR ++V F + PR + SA R T HKLYV+NLSW + S
Sbjct: 164 FDGSQVGGRTVKVNFPEV---PRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQ 220
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
LR+ F+ +S+KV+++ + GRS G+GF++F++ E ++A+ +++
Sbjct: 221 GLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMN 268
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+LYV NL + + S+ L E F+ + ++V++ RS G+ FV+ + EEA+ AI
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 236 LDGKELMGRPLRLKF 250
DG ++ GR +++ F
Sbjct: 164 FDGSQVGGRTVKVNF 178
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 15/179 (8%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+S A + LF G V VE+I K G++R F FVTM+S EE +AA Q
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQR---------SASAPARETQHKLYVSNLSWKVRST 189
F+ E+ GR +RV P P++ S + ++ +++YV NL+W V
Sbjct: 148 FNGYELDGRALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQD 202
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L GR +R+
Sbjct: 203 ALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W ++ LF+ G VVD +++ + G++R F FVT +S EE A+
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D +++GR IRV A+ + PR Q
Sbjct: 249 LDGVDLNGRAIRVSPAEA-RPPRRQ 272
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + S L E F N +V+++ GRS G+GFV+ ++KEE EAA
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GR LR+ G
Sbjct: 148 FNGYELDGRALRVNSG 163
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 105/177 (59%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 117 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 176
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F +V+GR++ V A + + RP R + + ++YV NL W+V + L E FS
Sbjct: 177 FHRYDVNGRLLTVNKAAPRGARVERPPRDSG-----SSFRIYVGNLPWQVDDSRLVELFS 231
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ + GRS G+GFV+ A++EE + AI++LDG+ L GR LR+ ++
Sbjct: 232 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 288
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 9/178 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 118 KVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 177
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---TQHKLYVSNLSWKVRSTHLREFF 195
F +V GR++ V A PR R PAR+ + ++YV NL W+V + L + F
Sbjct: 178 FHRYDVGGRLLTVNKAA----PRGAR-VERPARDFGGSSFRIYVGNLPWQVDDSRLVQLF 232
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S + V ++VV++ GRS G+GFV+ A++EE + AI++LDG+ L GR LR+ ++
Sbjct: 233 SEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 290
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVE--IIKHKGGKNRNFAFVTMASPEEAQAAVN 137
++YV NL W+ E+ + G + VE + + G++R F +VT+ S + AQ AV
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ D V GR ++ F++ +KK + A T K+++ NL W V L EFF A
Sbjct: 62 KLDGHIVQGRALKASFSQPYKKAGKEGPVEVAASHT--KVFIGNLPWGVDDGSLEEFFRA 119
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ V +K+V++ + GRS G+GFV+ ++ +EA+ A+ SLDG + GR LR+K
Sbjct: 120 HGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKL 172
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+++ NLPW ++ F G VV+ +I+ + G++R F FVT++SP+EA AV
Sbjct: 98 KVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKS 157
Query: 139 FDTQEVSGRIIRVEFA 154
D + GR +RV+ A
Sbjct: 158 LDGADCDGRRLRVKLA 173
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 176 KLYVSNLSWKVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++YV NLSW S L + A +VV + GRS G+G+V+ + + A+ A+
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 235 SLDGKELMGRPLRLKFGQ 252
LDG + GR L+ F Q
Sbjct: 62 KLDGHIVQGRALKASFSQ 79
>gi|125599171|gb|EAZ38747.1| hypothetical protein OsJ_23149 [Oryza sativa Japonica Group]
Length = 220
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
Query: 93 AEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151
EI F+ G V +V+II K ++R FAFVTMA+ EEA A+ F+ + GR RV
Sbjct: 4 GEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMFNGALLGGRTARV 63
Query: 152 EFAKKFKKPRPQRSASAPARETQH-----KLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
+ + + ++A RE + K+Y NL W VR+ LR F + ++V
Sbjct: 64 NYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRAAFEGQPGLLDARV 123
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE----SNK 262
+FE + GRS G+GFVSF T E+A+AA+ +LDG EL GRPLRL ++N ++
Sbjct: 124 IFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMAEQNPTAGSPSTVQSQ 183
Query: 263 EEEDVSEDQSAES 275
EEE SE AE+
Sbjct: 184 EEETASESSDAET 196
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 116/205 (56%), Gaps = 16/205 (7%)
Query: 50 RNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
R L L+V ++ + V PE RKLYV N+P + + E++++FA GTV E
Sbjct: 45 RGLALRVSAS---SAVLEAPEVVAA----RKLYVGNVPRTVTNDELRDMFAAHGTVERAE 97
Query: 110 IIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASA 168
++ K ++R F FVTM++ EEA AAV + EV GR I+V + F P SA
Sbjct: 98 VMYDKYTNRSRRFGFVTMSTVEEANAAVEALNGTEVGGRKIKVNVTESFL---PNIDRSA 154
Query: 169 PARE-----TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
P E +Q+K+YV NL+ V + L+ FFS +S+ V +S GYGFV+F
Sbjct: 155 PESEPVFVDSQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTF 214
Query: 224 ATKEEAEAAISSLDGKELMGRPLRL 248
+++EE EAA+++ + EL G+P+R+
Sbjct: 215 SSEEEVEAAVATFNNAELEGQPIRV 239
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL + + +KN F+ G ++ + G K++ + FVT +S EE +AAV
Sbjct: 167 KVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 226
Query: 139 FDTQEVSGRIIRVEFA 154
F+ E+ G+ IRV A
Sbjct: 227 FNNAELEGQPIRVNRA 242
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 7/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP++ A + + T VE++ + G++R FAFVTM++ E+ + +
Sbjct: 134 KLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 193
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D SGR +RV A K K P ET+HKL+V NLSW V L + F
Sbjct: 194 LDGTLYSGRTMRVNMADKPKPKEPLYP------ETEHKLFVGNLSWTVTPEMLTDAFQQC 247
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ V ++V+++ GRS GYGFV ++TKEE + AI +L+G E+ GR +R+
Sbjct: 248 GDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNL 299
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 6 AAATSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNL---CLQ 55
++AT ++ N P++ S L + P +++L+ + S + F T + C +
Sbjct: 130 SSATKLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCER 189
Query: 56 VCSTLQDTTV-----------ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT 104
V L T + KP++ KL+V NL W+ + + + F CG
Sbjct: 190 VIKNLDGTLYSGRTMRVNMADKPKPKEPLYPETEHKLFVGNLSWTVTPEMLTDAFQQCGD 249
Query: 105 VVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
VV ++ + G++R + FV ++ EE A+ + E+ GR IRV A
Sbjct: 250 VVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLA 300
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + S L + P +V+++ GRS G+ FV+ +T E+ E I +
Sbjct: 134 KLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 193
Query: 236 LDGKELMGRPLRLKFGQK 253
LDG GR +R+ K
Sbjct: 194 LDGTLYSGRTMRVNMADK 211
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 126 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 185
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET--QHKLYVSNLSWKVRSTHLREFFS 196
F +V+GR++ V A PR R P R++ ++YV NL W+V + L E FS
Sbjct: 186 FHRYDVNGRLLTVNKAA----PRGSR-VDRPPRQSGPSLRIYVGNLPWQVDDSRLVELFS 240
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ A+++E + AI++LDG+ L GR LR+ ++
Sbjct: 241 EHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQSLDGRALRVNVAEE 297
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 144 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 203
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
F +V GR++ V A PR R P + ++YV NL W+V + L + FS
Sbjct: 204 FHRYDVDGRLLTVNKAA----PRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSE 259
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ AT+EE + AI++LDG+ L GR LR+ ++
Sbjct: 260 HGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEE 315
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 113/191 (59%), Gaps = 4/191 (2%)
Query: 61 QDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKN 118
++T E +P+ ++ RR KLYV NLP S +A++ LF GTV VE+++++ G +
Sbjct: 75 EETNKERQPKNEEELPPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGIS 134
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
R FAFVTM++ +EA++A+ + ++ GR + V F K + + S ET ++L+
Sbjct: 135 RGFAFVTMSTVKEAKSAIEKLQGSDLGGRDMIVNFPAKVLSKKKETDDSYI--ETPYQLF 192
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V NL+W V+ L+ FS + N ++KV++ G +GFV +++ E E AI SL G
Sbjct: 193 VGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHG 252
Query: 239 KELMGRPLRLK 249
KE GR L+++
Sbjct: 253 KEFHGRNLKVR 263
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 113/238 (47%), Gaps = 32/238 (13%)
Query: 32 KLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFS 91
KL S + NFP + L + D+ +ET P Q L+V NL WS
Sbjct: 154 KLQGSDLGGRDMIVNFPAKVLSKK--KETDDSYIET-PYQ---------LFVGNLAWSVK 201
Query: 92 VAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150
+K+LF+ G V ++I KGG R F FV ++S E + A+ +E GR ++
Sbjct: 202 KEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLK 261
Query: 151 VEFAKKFKK-----------PRPQRSASAPARET--------QHKLYVSNLSWKVRSTHL 191
V A+ K +P ET + +YVSNLS V++ L
Sbjct: 262 VRQARPTSKDMVVSDVEENIAKPSTMVEDSMTETVKATFVGSAYGVYVSNLSLSVKNKAL 321
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
E FS + N + ++V++ GRS YGFV+F+++ E EAAI++LD KE R L +K
Sbjct: 322 SELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDKKEFYERKLVVK 379
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+YV NL S + LF+ G V+D ++ K G++R + FV +S E +AA+
Sbjct: 307 VYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAAL 366
Query: 140 DTQEVSGRIIRVEFAK 155
D +E R + V+ AK
Sbjct: 367 DKKEFYERKLVVKEAK 382
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
++ +V+GR++ V A + + RP+R P R E +++YV N+ W + L + FS
Sbjct: 197 YNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFS 251
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ VS++VV++ GRS G+GFV+ A++ E AI++LDG+ L GR +R+ +
Sbjct: 252 EHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 8 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 67
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
F +V GR++ V A PR R P + ++YV NL W+V + L + FS
Sbjct: 68 FHRYDVDGRLLTVNKAA----PRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSE 123
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ AT+EE + AI++LDG+ L GR LR+ ++
Sbjct: 124 HGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEE 179
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ LF GTV E+I ++ ++R F FVTM++ EEA+ AV +
Sbjct: 125 KLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEK 184
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F + GR++ V A + RP+R + E +YV NL W V +T L + FS +
Sbjct: 185 FSRYDFDGRLLTVNKASP-RGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEH 243
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
N V+++VV++ RS G+GFV+ + + E + A+++LDG+ L GRP+R+ +
Sbjct: 244 GNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVSVAE 297
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 11/178 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP++ A + + VE++ + G++R FAFVTM++ E+ + +
Sbjct: 135 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 194
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
D SGR +RV A + P+P+ AP ET+HKL+V NLSW V L + F
Sbjct: 195 LDGTLYSGRTMRVNMADR---PKPK----APLYPETEHKLFVGNLSWTVTPEMLTDAFQR 247
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR--LKFGQK 253
N V ++V+++ GRS GYGFV ++TKEE + AI +L+G E+ GR +R L G++
Sbjct: 248 CGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLALGKR 305
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 22/169 (13%)
Query: 8 ATSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNL---CLQVC 57
AT ++ N P++ S L + P +++L+ + S + F T + C +V
Sbjct: 133 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 192
Query: 58 STLQDTTV-----------ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
L T KP+ KL+V NL W+ + + + F CG VV
Sbjct: 193 KNLDGTLYSGRTMRVNMADRPKPKAPLYPETEHKLFVGNLSWTVTPEMLTDAFQRCGNVV 252
Query: 107 DVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
++ + G++R + FV ++ EE A+ + E+ GR IRV A
Sbjct: 253 GARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLA 301
>gi|357141664|ref|XP_003572305.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like
[Brachypodium distachyon]
Length = 250
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 37/198 (18%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
R +L N+PW ++ +++ LF G+VV VE +
Sbjct: 85 RTRLIAMNIPWDYTPDDMRALFEKQGSVVSVETL-------------------------- 118
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ R I+V+FAK KK Q + + + +H ++V NL+W+VRS HLRE F++
Sbjct: 119 -------NDRTIKVDFAKPRKK---QPTVPSAPMQNKHIVFVGNLTWRVRSRHLRELFAS 168
Query: 198 NFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
S +V+F++ R SAGY FVSF++KEEAEAAIS+ +GKEL+GRP+ + F ++
Sbjct: 169 TPGVQSVEVIFQTTTPRRSAGYAFVSFSSKEEAEAAISTFNGKELLGRPINVTFKEETAK 228
Query: 257 VSESNKEEEDVSEDQSAE 274
S+ EE+ E +S+E
Sbjct: 229 KKISSHSEEENLEAESSE 246
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 59 TLQDTTVET---KPEQTQK-------QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDV 108
TL D T++ KP + Q QN + ++V NL W ++ LFA V V
Sbjct: 117 TLNDRTIKVDFAKPRKKQPTVPSAPMQN-KHIVFVGNLTWRVRSRHLRELFASTPGVQSV 175
Query: 109 EIIKHKGGKNRN--FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK 159
E+I R+ +AFV+ +S EEA+AA++ F+ +E+ GR I V F ++ K
Sbjct: 176 EVIFQTTTPRRSAGYAFVSFSSKEEAEAAISTFNGKELLGRPINVTFKEETAK 228
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 128/264 (48%), Gaps = 33/264 (12%)
Query: 12 FLTNHPFSFSCLFPKLPHCIKLLHSSNS-TPSLSYNFPTRNLCLQVCSTLQ-----DTTV 65
F + P S S L P L KL S S + + +N P V T + D
Sbjct: 20 FCVSRPASVSLLPPSL--SFKLNSDSVSFSIAAKWNSPASRFVRNVAITSEFEVEEDGFA 77
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
+ Q Q + KL+V NLP++ A++ LF G V VE+I K G++R F FV
Sbjct: 78 DDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 137
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS---ASAP------------ 169
TM+S E +AA NQF+ E+ GR +RV P P+R + P
Sbjct: 138 TMSSVSEVEAAANQFNGYELDGRPLRVNAGP----PPPKREDGFSRGPRSSFGSSGSGYG 193
Query: 170 -----ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+ +++YV NLSW V L F+ V ++V+++ + GRS G+GFV++
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYN 253
Query: 225 TKEEAEAAISSLDGKELMGRPLRL 248
+ +E + AI+SL+G +L GR +R+
Sbjct: 254 SSQEVQNAINSLNGADLDGRQIRV 277
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L + F + N +V+++ GRS G+GFV+ ++ E EAA +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQ 151
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GRPLR+ G
Sbjct: 152 FNGYELDGRPLRVNAG 167
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W +++LFA G VV+ +I + G+++ F FVT S +E Q A+N
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINS 264
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
+ ++ GR IRV A+ + PR Q
Sbjct: 265 LNGADLDGRQIRVSEAEA-RPPRRQ 288
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVE--IIKHKGGKNRNFAFVTMASPEEAQAAVN 137
++YV NL W+ E+ + G + VE + + G++R F +VT+ S + AQ AV
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ D V GR ++ +++ +KK + A T K+++ NL W V L EFF A
Sbjct: 62 KLDGHIVQGRALKASYSQPYKKAGKEGPVEVAASHT--KVFIGNLPWGVDDGSLEEFFRA 119
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ V K+V++ + GRS G+GFV+ ++ +EA+ A+ SLDG + GR LR+K
Sbjct: 120 HGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKL 172
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+++ NLPW ++ F G VV+V+I+ + G++R F FVT++SP+EA AV
Sbjct: 98 KVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKS 157
Query: 139 FDTQEVSGRIIRVEFA 154
D + GR +RV+ A
Sbjct: 158 LDGADCDGRRLRVKLA 173
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 176 KLYVSNLSWKVRSTHLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++YV NLSW S L + A +VV + GRS G+G+V+ + + A+ A+
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 235 SLDGKELMGRPLRLKFGQ 252
LDG + GR L+ + Q
Sbjct: 62 KLDGHIVQGRALKASYSQ 79
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 21/185 (11%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NL +S A + LF G V VE+I K G++R F FVTM+S EE +AA Q
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ---------------HKLYVSNLS 183
F+ E+ GR +RV P P++ ++ RE +++YV NL+
Sbjct: 148 FNGYELDGRALRVN-----SGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLA 202
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W V L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L G
Sbjct: 203 WGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNG 262
Query: 244 RPLRL 248
R +R+
Sbjct: 263 RAIRV 267
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W ++ LF+ G VVD +++ + G++R F FVT +S EE A+
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D +++GR IRV A+ + PR Q
Sbjct: 255 LDGVDLNGRAIRVSPAEA-RPPRRQ 278
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + S L E F N +V+++ GRS G+GFV+ ++KEE EAA
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GR LR+ G
Sbjct: 148 FNGYELDGRALRVNSG 163
>gi|255545842|ref|XP_002513981.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547067|gb|EEF48564.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 305
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 115/203 (56%), Gaps = 19/203 (9%)
Query: 85 NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV 144
N+PW+ + +I+ LF GTVVDVE+ + +NR AFV+M SPEEA A+ D+ E
Sbjct: 104 NVPWNCTTEDIRALFEKFGTVVDVELSMYNKTRNRGLAFVSMGSPEEAATAIKSLDSYEF 163
Query: 145 SGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF-SANFNPVS 203
GR +++ +AK K+ P L+V+NL + + L+EFF S + S
Sbjct: 164 EGRSLKMNYAKLKKE--KPLPPLPPKPVPTFNLFVANLPFDAKDNDLKEFFKSEGADIAS 221
Query: 204 SKVVFESNEG--RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL----KF------- 250
+++V+ +++ + +GYGFV+F TK+EA+AA+S+ K MGRP+R+ +F
Sbjct: 222 AEIVYHNHDKPRKPSGYGFVAFKTKKEADAALSTFADKVFMGRPIRVARSKQFVRQPREE 281
Query: 251 GQKNDDVSES---NKEEEDVSED 270
GQ++DD S E+ D + D
Sbjct: 282 GQQSDDTSTDLNIGVEQADTTND 304
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 11/178 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP++ A + + VE++ + G++R FAFVTM++ E+ + +
Sbjct: 251 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 310
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
D SGR +RV A + P+P+ AP ET+HKL+V NLSW V L + F
Sbjct: 311 LDGTLYSGRTMRVNMADR---PKPK----APLYPETEHKLFVGNLSWTVTPEMLTDAFQR 363
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR--LKFGQK 253
N V ++V+++ GRS GYGFV ++TKEE + AI +L+G E+ GR +R L G++
Sbjct: 364 CGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLALGKR 421
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 22/169 (13%)
Query: 8 ATSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNL---CLQVC 57
AT ++ N P++ S L + P +++L+ + S + F T + C +V
Sbjct: 249 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 308
Query: 58 STLQDTTV-----------ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
L T KP+ KL+V NL W+ + + + F CG VV
Sbjct: 309 KNLDGTLYSGRTMRVNMADRPKPKAPLYPETEHKLFVGNLSWTVTPEMLTDAFQRCGNVV 368
Query: 107 DVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
++ + G++R + FV ++ EE A+ + E+ GR IRV A
Sbjct: 369 GARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLA 417
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ + LF GTV E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 122 KLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 181
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R P A E ++YV NL W+V L + FS
Sbjct: 182 FNRYDINGRLLTVNKAA----PRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSE 237
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ V ++VV++ GRS G+GFV+ +T+ E + AI++LDG+ L GR +R+ +
Sbjct: 238 HGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAE 292
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S P + KL+V NL + V L E F ++V++ +S G+GFV+ +T
Sbjct: 113 SYPLPPEEAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTV 172
Query: 227 EEAEAAISSLDGKELMGRPL 246
EEAE A+ + ++ GR L
Sbjct: 173 EEAEKAVEMFNRYDINGRLL 192
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ ++ LF GTV E+I ++ +R F FV+M++ EEA+ AV
Sbjct: 142 KIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEM 201
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
F ++ GR++ V A + RP+R P R E +++YV NL W V + L + FS
Sbjct: 202 FHRHDLDGRLLTVNKAAP-RGSRPER----PPRVFEPGYRIYVGNLPWDVDNARLEQIFS 256
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ + GRS G+GFV+ +T+ E AI++LDG+ L GR +R+ ++
Sbjct: 257 EHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQ 313
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQ 138
KL+V N P+ ++ LF GTV E+I ++ +R F FVTM + EEA++AV +
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEK 169
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ + +GR + V A K RP+R+ AP E ++YV+NL+W+V ++ L + FS
Sbjct: 170 FNGYDYNGRSLVVNKASP-KGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSE 228
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ VS++VV++ GRS G+GFV+ + + E AI++LDG+ L GR +R+ +
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAE 283
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA AV
Sbjct: 117 KVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 176
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+V+GR++ V A + + RP R S P+ ++YV NL W+V + L + FS
Sbjct: 177 LHRYDVNGRLLTVNKAAPRGSRVDRPPRQ-SGPS----LRIYVGNLPWQVDDSKLVQMFS 231
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ AT++E + AI++LDG+ L GR LR+ ++
Sbjct: 232 EHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIAALDGQSLDGRALRVNVAEE 288
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 116 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 175
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F +V+GR++ V A + + RP R + + ++YV NL W+V + L E FS
Sbjct: 176 FHRYDVNGRLLTVNKAAPRGARVERPPRDSG-----SSFRIYVGNLPWQVDDSRLVELFS 230
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ + GRS G+GFV+ A++ E + AI++LDG+ L GR LR+ ++
Sbjct: 231 EHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDGQSLEGRALRVNVAEE 287
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 10/159 (6%)
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ET 173
++R FAFVTMA+ EEA A+ FD + GR RV + + + +R+ + R +
Sbjct: 87 RSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNY-PEVPRGGERRTVTMSGRRRDDG 145
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+K+Y NL W VR+ LR F + ++V+FE GRS G+GFVSF+T E+A+AA+
Sbjct: 146 TYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAAL 205
Query: 234 SSLDGKELMGRPLRLKFGQKN------DDVSESNKEEED 266
SLDG EL GR LRL ++N +++ +EE D
Sbjct: 206 ESLDGVELEGRSLRLSLAEQNPPPGSPPSTAQAQQEETD 244
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W ++N+F ++D +I + + G++R F FV+ ++ E+AQAA+
Sbjct: 148 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 207
Query: 139 FDTQEVSGRIIRVEFAKKFKKP-RPQRSASAPARET 173
D E+ GR +R+ A++ P P +A A ET
Sbjct: 208 LDGVELEGRSLRLSLAEQNPPPGSPPSTAQAQQEET 243
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-----GQKNDDVSES 260
++++ RS G+ FV+ AT EEA AI DG L GR R+ + G + V+ S
Sbjct: 79 IIYDKVTNRSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMS 138
Query: 261 NKEEED 266
+ +D
Sbjct: 139 GRRRDD 144
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ + LF GTV E+I ++ ++R F FVTM++ EEA+ AV +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAVEK 173
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ EV+GR++ V A PR R P + + ++YV NL W V + L++ FS
Sbjct: 174 FNRYEVNGRLLTVNIAA----PRGSRPERQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSE 229
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + + E AI++LDG+ L GR +++ ++
Sbjct: 230 HGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAALDGQNLEGRAIKVNVAEE 285
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 67 TKPEQTQKQ-NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFV 124
++PE+ +Q + ++YV NLPW ++ +F+ G VVD ++ + G++R F FV
Sbjct: 194 SRPERQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFV 253
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
TM++ E A+ D Q + GR I+V A++ RP+R
Sbjct: 254 TMSNENEVNDAIAALDGQNLEGRAIKVNVAEE----RPRRG 290
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P + KL+V NL + V S L F S+V++ + +S G+GFV+ +T EE
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A+ A+ + E+ GR L +
Sbjct: 167 AKKAVEKFNRYEVNGRLLTVNI 188
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 30/230 (13%)
Query: 45 YNFPTRNLCLQVCSTLQ-----DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLF 99
+N P V T + D + P + Q + KL+V NLP++ A++ LF
Sbjct: 52 WNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLF 111
Query: 100 APCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158
G V VE+I K G++R F FVTM+S E +AA QF+ E+ GR +RV
Sbjct: 112 ESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGP--- 168
Query: 159 KPRPQRS---ASAP-----------------ARETQHKLYVSNLSWKVRSTHLREFFSAN 198
P P+R + P + +++YV NLSW V L FS
Sbjct: 169 -PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQ 227
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
V ++V+++ + GRS G+GFV++ + +E + AI SLDG +L GR +R+
Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L + F + N +V+++ GRS G+GFV+ ++ E EAA
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GRPLR+ G
Sbjct: 152 FNGYELDGRPLRVNAG 167
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W +++LF+ G VV+ +I + G+++ F FVT S +E Q A+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ + PR Q
Sbjct: 265 LDGADLDGRQIRVSEAEA-RPPRRQ 288
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNR 119
+D + P + Q + KL+V NLP++ A++ LF G V VE+I K G++R
Sbjct: 73 EDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSR 132
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS---ASAP------- 169
F FVTM+S E +AA QF+ E+ GR +RV P P+R + P
Sbjct: 133 GFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGP----PPPKREDGFSRGPRSSFGSS 188
Query: 170 ----------ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
+ +++YV NLSW V L FS V ++V+++ + GRS G+G
Sbjct: 189 GSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFG 248
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRL 248
FV++ + +E + AI SLDG +L GR +R+
Sbjct: 249 FVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L + F + N +V+++ GRS G+GFV+ ++ E EAA
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GRPLR+ G
Sbjct: 152 FNGYELDGRPLRVNAG 167
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W +++LF+ G VV+ +I + G+++ F FVT S +E Q A+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ + PR Q
Sbjct: 265 LDGADLDGRQIRVSEAEA-RPPRRQ 288
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 104/168 (61%), Gaps = 13/168 (7%)
Query: 93 AEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151
+++ ++F G+V+ VEI+ + ++R FAFVTM S +EA+ A+ FD +V GR ++V
Sbjct: 4 SQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVKV 63
Query: 152 EFAKKFKKPRP-QRSASAPA--------RETQHKLYVSNLSWKVRSTHLREFFSANFNPV 202
F + PR +R+ P ++ +K+Y NLSW++ S LR+ F+ + +
Sbjct: 64 NFPEV---PRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLL 120
Query: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+KV++E GRS G+GF+SFA+ E AE+A+++++ E+ GRPLRL
Sbjct: 121 GAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRLNL 168
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W + +++ FA ++ ++I + + G++R F F++ AS E A++A+N
Sbjct: 94 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 153
Query: 139 FDTQEVSGRIIRVEFA 154
+ EV GR +R+ A
Sbjct: 154 MNEVEVEGRPLRLNLA 169
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
S+ L + F+ + +S ++V++ RS G+ FV+ + +EA+ AI DG ++ GR ++
Sbjct: 3 SSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVK 62
Query: 248 LKF 250
+ F
Sbjct: 63 VNF 65
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V N+P+ S ++ NLF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 31 KLFVGNIPYDDS-EKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVEM 89
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+++GR + V A PR R + ++YV NL W+V + L + FS +
Sbjct: 90 LHRYDINGRNLTVNKAA----PRGSRPERPRESDPSLRVYVGNLPWQVDDSRLEQLFSEH 145
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ ++VV++ GRS G+GFV+ AT+EE + AI++LDG+ L GR LR+ ++
Sbjct: 146 GKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRVNVAEE 200
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
Q KL+V N+ + S L F ++V++ +S G+GFV+ +T EEAE A+
Sbjct: 29 QAKLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAV 87
Query: 234 SSLDGKELMGRPL 246
L ++ GR L
Sbjct: 88 EMLHRYDINGRNL 100
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 24/190 (12%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVE----IIKHKGGKNRNFAFVTMASPEEAQAA 135
KLYV NLPW+ A++ + CG + VE + + G++R FAFVTM++ E AQ+
Sbjct: 1 KLYVGNLPWTCDSAQLAEI---CGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSV 57
Query: 136 VNQFDTQEVSGRIIRVEFAK----KFKKPR-------------PQRSASAPARETQHKLY 178
+++ D + GR ++V F + + KPR P R S + +K++
Sbjct: 58 IDRLDGSDFGGRPLKVSFPQPRENRDNKPRFGNNERGDRRSDRPPRQGSDRVLDNTNKMF 117
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NLSW + L + FS + V +KVV++ + G+S G+GFV+ + E A+ +LDG
Sbjct: 118 IGNLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDG 177
Query: 239 KELMGRPLRL 248
E GR +R+
Sbjct: 178 AEFEGREMRV 187
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLYV NL W S L E + + VV++ GRS G+ FV+ +T E A++ I
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 236 LDGKELMGRPLRLKFGQ 252
LDG + GRPL++ F Q
Sbjct: 61 LDGSDFGGRPLKVSFPQ 77
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ ++ LF GTV E+I ++ +R F FVTM++ EE++ AV
Sbjct: 150 KIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEM 209
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
++ GR + V A + RP+R P R E +++YV NL W V S L + FS
Sbjct: 210 LHRYDLDGRFLTVNKAAP-RGSRPER----PPRVSEPGYRIYVGNLPWDVDSGRLEQIFS 264
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ VS++VVF+ RS G+GFV+ +T+ E AI++LDG+ L GRP+R+ ++
Sbjct: 265 EHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIRVNVAEE 321
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY NLP+S A++ L G+ +E++ + GK+R FAFVTM+ E+ A +
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 177
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D +E GR +RV F+ K P+P+ ET+HKL+V NLSW V + L + F
Sbjct: 178 LDGKEFLGRTLRVNFSSK---PKPKEPLYP---ETEHKLFVGNLSWSVTNEILTQAFQEY 231
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V ++V+++ GRS GYGFV ++TK E EAA+++L+ EL GR +R+ Q
Sbjct: 232 GTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQ 285
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 176 KLYVSNLSWKVRSTHL----REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
KLY NL + V S L ++F SA +V+++ + G+S G+ FV+ + E+ A
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIQDFGSAEL----IEVLYDRDTGKSRGFAFVTMSCIEDCNA 173
Query: 232 AISSLDGKELMGRPLRLKFGQK 253
I +LDGKE +GR LR+ F K
Sbjct: 174 VIENLDGKEFLGRTLRVNFSSK 195
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 5 EAAATSIFLTNHPFSF-SCLFPKL------PHCIKLLHSSNSTPSLSYNFPTRNLCLQVC 57
+++AT ++ N P+S S L I++L+ ++ S + F T + C++ C
Sbjct: 113 DSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMS-CIEDC 171
Query: 58 STLQDT---------------TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPC 102
+ + + + + KP++ KL+V NL WS + + F
Sbjct: 172 NAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEY 231
Query: 103 GTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
GTVV ++ + G++R + FV ++ E +AA+ + E+ GR +RV A+
Sbjct: 232 GTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQ 285
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 8/163 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + +F G V E+I ++ G++R F FVTM++ EEA A+
Sbjct: 109 KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEM 168
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
F ++SGR++ V A + + RPQR APA + YV NL W+V + L + FS
Sbjct: 169 FSRYDISGRLLNVNRASSRGTRMERPQRQ-FAPA----FRAYVGNLPWQVDDSRLVQLFS 223
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
+ V +KVV++ GRS G+GFVS +KEE AIS+LDG+
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQ 266
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
Q +A P E K+YV NL + V S L + F ++V++ G+S G+GFV+
Sbjct: 98 QYAAVEPPEEA--KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVT 155
Query: 223 FATKEEAEAAISSLDGKELMGRPL 246
+T EEA+ AI ++ GR L
Sbjct: 156 MSTVEEADKAIEMFSRYDISGRLL 179
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLP+ + ++ LF GTV E+I + + +R F FVTM++ EE+ A+
Sbjct: 117 KIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDKAIEM 176
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
F+ + GR++ V A + RP+R P R E +++YV NL W V S L E FS
Sbjct: 177 FNRYNLDGRLLTVNKAAP-RGSRPER----PPRVSEPSYRIYVGNLPWGVDSGRLEEVFS 231
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ VS++VV + GRS G+GFV+ +++ E AI++LDG+EL GR +R+
Sbjct: 232 EHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQELDGRAIRV 283
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLPW ++ +F+ G VV +++ + G++R F FVTM+S E A+
Sbjct: 211 RIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAA 270
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSA 166
D QE+ GR IRV A + RP+RS+
Sbjct: 271 LDGQELDGRAIRVNVAAE----RPRRSS 294
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 211 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P + KL+V NL++ V S L F ++V++ +S G+GFV+ ++ +E
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 229 AEAAISSLDGKELMGRPL 246
AE A+ + +L GR L
Sbjct: 204 AETAVEKFNRYDLNGRLL 221
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 211 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P + KL+V NL++ V S L F ++V++ +S G+GFV+ ++ +E
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 229 AEAAISSLDGKELMGRPL 246
AE A+ + +L GR L
Sbjct: 204 AETAVEKFNRYDLNGRLL 221
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 136 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 195
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 196 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 251
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 252 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 307
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 137 NQFDTQEVS------GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
N ++Q+VS G + +++ + P P A KL+V NL++ V S
Sbjct: 100 NSLESQDVSEGDESEGDVSEGAVSERAEFPEPSEEA---------KLFVGNLAYDVNSQA 150
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L F ++V++ +S G+GFV+ ++ +EAE A+ + +L GR L
Sbjct: 151 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLL 206
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 103/181 (56%), Gaps = 6/181 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E+ Q+ + KL+V NLP+ + LF G V E+I ++ ++R F FVTM++
Sbjct: 88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMST 147
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVR 187
EEA AV + +++GR++ V A PR R AP + +++YV N+ W +
Sbjct: 148 VEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDID 203
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L + FS + VS++VVF+ GRS G+GFV+ +++ E AI++LDG+ L GR +R
Sbjct: 204 DARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 263
Query: 248 L 248
+
Sbjct: 264 V 264
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 137 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 196
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 197 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 252
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 253 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 308
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P + KL+V NL++ V S L F ++V++ +S G+GFV+ ++ +E
Sbjct: 130 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 189
Query: 229 AEAAISSLDGKELMGRPL 246
AE A+ + +L GR L
Sbjct: 190 AETAVEKFNRYDLNGRLL 207
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 126 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 185
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 186 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 241
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 242 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 297
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 137 NQFDTQEVS------GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
N ++Q+VS G + +++ + P P A KL+V NL++ V S
Sbjct: 90 NSLESQDVSEGDESEGDVSEGAVSERAEFPEPSEEA---------KLFVGNLAYDVNSQA 140
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L F ++V++ +S G+GFV+ ++ +EAE A+ + +L GR L
Sbjct: 141 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLL 196
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 118/205 (57%), Gaps = 11/205 (5%)
Query: 61 QDTTVETKPEQTQKQ-NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKN 118
+D+T + KPE +K + R KLYV NLP S A++ +LF GTV E+++++ G +
Sbjct: 84 KDSTRQ-KPENEEKSPSNRTKLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLS 142
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
R FAFVTM++ EA+AA+ + ++ GR + V F R ++ ET ++L+
Sbjct: 143 RGFAFVTMSTVIEAKAAIEKLQGSDLGGRDMIVNFPAAVLS-RGNKTEDEYV-ETPYQLF 200
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
NL+W V++ LR+ FS + + +KVV+ S G +GFV +++ E EAAI SL+G
Sbjct: 201 AGNLAWSVKNEILRDLFSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNG 260
Query: 239 KELMGRPLRLKFGQKNDDVSESNKE 263
KE GR L ++ V +NKE
Sbjct: 261 KEFHGRNLVVR------QVRPTNKE 279
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ LF GTV E+I ++ ++R F FVTM++ EEA++AV +
Sbjct: 110 KLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEK 169
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F+ ++ GR++ V A + RP+R + E+ +YV NL W V +T L++ FS +
Sbjct: 170 FNRYDIDGRLLTVNKASP-RGTRPERPPPRRSFESSLSIYVGNLPWDVDNTRLKQIFSKH 228
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
N V+++VV++ GRS G+GFV+ + + E A+++LDG+ L GR +++ +
Sbjct: 229 GNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVSVAE 282
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ LF GTV E+I ++ ++R F FVTM++ EEA+ AV+
Sbjct: 153 KLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDT 212
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ ++SGR++ V A PR R P + ++YV NL W V + L + FS
Sbjct: 213 FNRYDLSGRLLTVNKAA----PRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSE 268
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++V+++ + GRS G+GFV+ A + AI++LDG+ L GR +R+ ++
Sbjct: 269 HGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEE 324
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ LF GTV E+I ++ ++R F FVTM++ EEA+ AV+
Sbjct: 147 KLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDT 206
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ ++SGR++ V A PR R P + ++YV NL W V + L + FS
Sbjct: 207 FNRYDLSGRLLTVNKAA----PRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSE 262
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++V+++ + GRS G+GFV+ A + AI++LDG+ L GR +R+ ++
Sbjct: 263 HGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEE 318
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 28/196 (14%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP++ A + LF G V VE+I K G++R F FVTM++ EE +AA Q
Sbjct: 91 KLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQ 150
Query: 139 FDTQEVSGRIIRVEFA----------------------KKFKKPRPQRSASAPARETQHK 176
F+ E+ GR +RV F+ PR + ++
Sbjct: 151 FNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENTNFRGPR-----GGANLNSTNR 205
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+YV NLSW V L FS ++V+++ GRS G+GFV++ + EE AI SL
Sbjct: 206 IYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESL 265
Query: 237 DGKELMGRPLRLKFGQ 252
DG +L GR +R+ +
Sbjct: 266 DGVDLNGRSIRVTMAE 281
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 5/175 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NLP+ + + LF GTV EII ++ ++R F FVTM++ +EA+ A+ +
Sbjct: 99 KLYVGNLPYDVNSENLAQLFDQAGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEK 158
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F +++GR + V A PR R + +++YV NL W+V L + FS +
Sbjct: 159 FHRYDLNGRFLTVNKAA----PRGSRPERPSVFKIAYRIYVGNLPWQVDDARLEQVFSEH 214
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V+++VV + GRS G+GFV+ +++ E AI++LDG+ L GR + + Q+
Sbjct: 215 GQVVNARVVCDRETGRSRGFGFVTMSSETELNDAIAALDGQSLDGRAITVNIAQE 269
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 132 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 191
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 192 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 247
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 248 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 303
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ + LF G V E+I ++ ++R F FV+M++ EEA+ AV+
Sbjct: 149 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 208
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
F E+ GR++ V A + +P+R P R E ++YV NL W V S L + FS
Sbjct: 209 FHRYELDGRLLTVNKAAP-RGSQPER----PPRVFEPAFRMYVGNLPWDVDSARLEQVFS 263
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VVF+ GRS G+GFV+ +++ E E AI++ DG+ L GR +R+ ++
Sbjct: 264 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEE 320
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ + LF G V E+I ++ ++R F FV+M++ EEA+ AV+
Sbjct: 128 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 187
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
F E+ GR++ V A + +P+R P R E ++YV NL W V S L + FS
Sbjct: 188 FHRYELDGRLLTVNKAAP-RGSQPER----PPRVFEPAFRMYVGNLPWDVDSARLEQVFS 242
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VVF+ GRS G+GFV+ +++ E E AI++ DG+ L GR +R+ ++
Sbjct: 243 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEE 299
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 32/222 (14%)
Query: 65 VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAF 123
ET +Q KLYV NL WS + F+ G V E++ + G++R FAF
Sbjct: 76 AETFQDQATSTAASTKLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAF 135
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASA--------------- 168
VTMASP+ A+ A D E++GR IRV F +P+ +R+ A
Sbjct: 136 VTMASPDAAEKARRGLDGTELAGRAIRV----NFPQPKGERAPRAERGERSERSERSERT 191
Query: 169 --PARETQ----HKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFV 221
P + + ++LYV NL W + L + F F V+ ++VV + + GRS G+ FV
Sbjct: 192 YTPRGDGEAGDANRLYVGNLPWSMDDGMLEDLF-MEFGTVNYARVVMDRDSGRSRGFAFV 250
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
+ +T EEA A+++LDG+E+ GR +R+ K S N+E
Sbjct: 251 ALSTPEEANEAMANLDGEEIGGRTIRVNLATK----SSGNRE 288
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLPWS +++LF GTV ++ + G++R FAFV +++PEEA A+
Sbjct: 205 RLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMAN 264
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
D +E+ GR IRV A K R R AP
Sbjct: 265 LDGEEIGGRTIRVNLATKSSGNREGRERRAP 295
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + LF GTV E+I ++ ++R F FVTM++ EEA+ AV +
Sbjct: 128 KLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEK 187
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 188 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQVFSE 243
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + + E AI++LDG+ + GR +R+ ++
Sbjct: 244 HGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAALDGQNMEGRAIRVNVAEE 299
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
A P + KL+V NL++ V S L F ++V++ +S G+GFV+ +
Sbjct: 117 GAEFPEPSEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS 176
Query: 225 TKEEAEAAISSLDGKELMGRPL 246
T EEAE A+ + +L GR L
Sbjct: 177 TVEEAETAVEKFNRYDLNGRLL 198
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ + LF G V E+I ++ ++R F FV+M++ EEA+ AV+
Sbjct: 944 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 1003
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
F E+ GR++ V A + +P+R P R E ++YV NL W V S L + FS
Sbjct: 1004 FHRYELDGRLLTVNKAAP-RGSQPER----PPRVFEPAFRMYVGNLPWDVDSARLEQVFS 1058
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VVF+ GRS G+GFV+ +++ E E AI++ DG+ L GR +R+ ++
Sbjct: 1059 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEE 1115
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 13/180 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+S A++ LF G+V VE++ + G++R F FVTM+S EEA+AAV Q
Sbjct: 80 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAEAAVEQ 139
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR----------ETQHKLYVSNLSWKVRS 188
F+ GR +RV PR + + AP ++ +K+YV NL+W V +
Sbjct: 140 FNGYAFQGRQLRVNCGPP--PPRDESTPRAPRGGGGGGGGGFVDSANKVYVGNLAWGVDN 197
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ L FS + +KV+++ + GRS G+GFV++ + +E AIS+LDG +L GR +R+
Sbjct: 198 STLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAISNLDGIDLDGRQIRV 257
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL W + ++NLF+ G V+D ++I + G++R F FVT S +E A++
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAISN 244
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ KPR Q
Sbjct: 245 LDGIDLDGRQIRVTAAE--SKPRRQ 267
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L F + +VV++ GRS G+GFV+ ++ EEAEAA+
Sbjct: 80 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAEAAVEQ 139
Query: 236 LDGKELMGRPLRLKFG 251
+G GR LR+ G
Sbjct: 140 FNGYAFQGRQLRVNCG 155
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ A++ +LF G V E+I ++ ++R F FV+M++ EE A+
Sbjct: 137 KIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQSRGFGFVSMSTVEEVVKAIEM 196
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
FD +++GR + V A PR R+ P E ++YV N+ W+V + L + FS
Sbjct: 197 FDRYDINGRTLTVNKAA----PRGSRAERPPRDFEPAFRVYVGNIPWQVDNLRLEQLFSE 252
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+++VF+ GRS G+GFV+ +++ E E AI++LDG +L GR +++ Q+
Sbjct: 253 YGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIAALDGSDLDGRAIKVSMAQE 308
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ + LF GTV E+I ++ ++R F FVTM++ EEA+ AV +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F++ EV+GR + V A PR R P + ++YV NL W V S L FS
Sbjct: 174 FNSFEVNGRRLTVNRAA----PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV + GRS G+GFV + + E AI++LDG+ L GR +++ ++
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEE 285
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+ KL+V NL + V S L F S+V++ + +S G+GFV+ +T EEAE A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 234 SSLDGKELMGRPL 246
+ E+ GR L
Sbjct: 172 EKFNSFEVNGRRL 184
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ LF G V E+I ++ ++R F F+TM++ EEA+ AV
Sbjct: 94 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 153
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR + V A PR R P A E ++YV NL W+V L + FS
Sbjct: 154 FNRYDLNGRFLTVNKAA----PRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSE 209
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ + RS G+GFV+ +++ E AI++LDG+ L GR +R+ ++
Sbjct: 210 HGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEE 265
>gi|449445537|ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 286
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP S +AE+ +F P GTV+ E+ ++ + G ++ +VTM S A+ ++
Sbjct: 103 ELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 162
Query: 139 FDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPAR----ETQHKLYVSNLSWKVRSTHLR 192
D +V GR +RV FA KK S+P + E+ +K+YV NLSW V+ LR
Sbjct: 163 LDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLR 222
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
FS VS+KV+ + G+S YGF+SF++ E +A+I SLDG E R L ++ G
Sbjct: 223 NLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASI-SLDGTEYNNRKLVVREG 280
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R+LYV N+P + + E+ + G V E++ K G++R FAFVTM + E+A AA+
Sbjct: 79 RRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIE 138
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA---RETQ-----HKLYVSNLSWKVRST 189
+ + E+ GR I+V +K P +S P+ ETQ +K+YV NL+ V +
Sbjct: 139 KLNGTEIGGREIKVNITEK-----PLQSLDLPSLQSDETQFVDSPYKVYVGNLAKTVATD 193
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ FFS N +S+KV +S+G+GFV+F+++E+ E AISS + L G+P+R+
Sbjct: 194 TLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQPIRV 252
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+A P+ E +LYV N+ + + L + + ++V+++ GRS + FV+
Sbjct: 69 AAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMK 128
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQK 253
T E+A AAI L+G E+ GR +++ +K
Sbjct: 129 TAEDANAAIEKLNGTEIGGREIKVNITEK 157
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
++TQ + K+YV NL + + +KN F+ G V+ ++ + G K+ F FVT +S
Sbjct: 170 DETQFVDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSS 229
Query: 129 PEEAQAAVNQFDTQEVSGRIIRV 151
E+ + A++ F+ + G+ IRV
Sbjct: 230 EEDVEVAISSFNNSLLEGQPIRV 252
>gi|449518978|ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 284
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP S +AE+ +F P GTV+ E+ ++ + G ++ +VTM S A+ ++
Sbjct: 101 ELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 160
Query: 139 FDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPAR----ETQHKLYVSNLSWKVRSTHLR 192
D +V GR +RV FA KK S+P + E+ +K+YV NLSW V+ LR
Sbjct: 161 LDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLR 220
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
FS VS+KV+ + G+S YGF+SF++ E +A+I SLDG E R L ++ G
Sbjct: 221 NLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASI-SLDGTEYNNRKLVVREG 278
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ LF G V E+I ++ ++R F F+TM++ EEA+ AV
Sbjct: 134 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 193
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR + V A PR R P A E ++YV NL W+V L + FS
Sbjct: 194 FNRYDLNGRFLTVNKAA----PRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSE 249
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ + RS G+GFV+ +++ E AI++LDG+ L GR +R+ ++
Sbjct: 250 HGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEE 305
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ + +F G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 129 KLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 188
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRSTHLREFFS 196
+ +++GR++ V A + RP+R P RE + ++YV NL W V + L + FS
Sbjct: 189 LNGFDMNGRLLTVNKAAP-RGSRPER----PPREFEPSCRVYVGNLPWDVDNARLEQVFS 243
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ +S++VV + GRS G+GFVS A++ E AI++LDG+ L GR +R+ ++
Sbjct: 244 EHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAALDGQTLDGRAIRVNVAEE 300
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 14/180 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLYV N+ W+ + + F G E++ + GK+R FAFVT+++ + A+ A+ +
Sbjct: 19 KLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDAAKTAIEK 78
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSA--------SAPARETQHKLYVSNLSWKVRSTH 190
D E+ GR +RV + + PR S PA K +V+N+ W V
Sbjct: 79 LDGHELEGRPLRVNYPQV---PRGGGGFGGGFGTRPSIPANPA--KCFVANIPWSVDDQG 133
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L+EFFS++ V +++ ++ GRS G GFV+FAT +EA AIS+LDG EL GR +R+
Sbjct: 134 LQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDGAELGGRSIRVAL 193
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S PA T KLYV N++W V S L + F+ +V+++ G+S G+ FV+ +T+
Sbjct: 12 SEPAPNT--KLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTE 69
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQ 252
+ A+ AI LDG EL GRPLR+ + Q
Sbjct: 70 DAAKTAIEKLDGHELEGRPLRVNYPQ 95
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
K +V N+PWS ++ F+ GTVVD I+ + G++R FVT A+P+EA A++
Sbjct: 119 KCFVANIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISA 178
Query: 139 FDTQEVSGRIIRVEFA 154
D E+ GR IRV A
Sbjct: 179 LDGAELGGRSIRVALA 194
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 8/189 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMAS 128
E +KQ +LYV NLP S +A++ +F P G+V+ VE+ ++ + G +R ++TM S
Sbjct: 92 ELKKKQAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPETGVSRGCGYITMGS 151
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR--PQRSASAPAR----ETQHKLYVSNL 182
E A+ AV+ D +V GR +RV ++ + R P+ SAP + E+ HKLYV NL
Sbjct: 152 VESARNAVSALDGSDVGGREMRVRYSVEISSGRRNPEALNSAPTKHLFYESPHKLYVGNL 211
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
W + LR F+ VS++V+ + G++ Y F+SF + E +AA+ S++G E
Sbjct: 212 PWSTKPDELRNLFNHFGIVVSARVLSDRKGGKNRTYAFLSFLSDAERDAAL-SMNGTEFY 270
Query: 243 GRPLRLKFG 251
R L +K G
Sbjct: 271 DRMLVVKRG 279
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ F ++ +LF GTV E+I ++ ++R F FVTM++ EE + AV
Sbjct: 123 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 182
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F E++GR++ V A P+ + P ++YV NL W V ++ L + FS +
Sbjct: 183 FSGYELNGRVLTVNKAA----PKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEH 238
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
++VV++ GRS G+GFV+ +++ + AI++LDG+ L GR +R+
Sbjct: 239 GKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRV 288
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLPW + ++ +F+ G V D ++ + G++R F FVTM+S + A+
Sbjct: 216 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 275
Query: 139 FDTQEVSGRIIRVEFAKKFKKP 160
D Q + GR IRV A + KP
Sbjct: 276 LDGQSLDGRAIRVNVAAQRPKP 297
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ F ++ +LF GTV E+I ++ ++R F FVTM++ EE + AV
Sbjct: 125 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 184
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F E++GR++ V A P+ + P ++YV NL W V ++ L + FS +
Sbjct: 185 FSGYELNGRVLTVNKAA----PKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEH 240
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
++VV++ GRS G+GFV+ +++ + AI++LDG+ L GR +R+
Sbjct: 241 GKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRV 290
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLPW + ++ +F+ G V D ++ + G++R F FVTM+S + A+
Sbjct: 218 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 277
Query: 139 FDTQEVSGRIIRVEFAKKFKKP 160
D Q + GR IRV A + KP
Sbjct: 278 LDGQSLDGRAIRVNVAAQRPKP 299
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R+LYV N+P + + E+ + G V E++ K G++R FAFVTM + E+A AA+
Sbjct: 79 RRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIE 138
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ--------HKLYVSNLSWKVRST 189
+ + E+ GR I+V +K P +S P+ ++ +K+YV NL+ V +
Sbjct: 139 KLNGTEIGGREIKVNITEK-----PLQSLDLPSLQSDESQFVDSPYKVYVGNLAKTVATD 193
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ FFS N +S+KV +S+G+GFV+F+++E+ E AISS + L G+P+R+
Sbjct: 194 TLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQPIRV 252
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+A P+ E +LYV N+ + + L + + ++V+++ GRS + FV+
Sbjct: 69 AAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMK 128
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQK 253
T E+A AAI L+G E+ GR +++ +K
Sbjct: 129 TAEDANAAIEKLNGTEIGGREIKVNITEK 157
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 9/179 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVN 137
R+L+V NLP V E+ LF P GTV+ VE+ + + G +R FVTM S EA+ A+N
Sbjct: 128 RELFVCNLPRRCGVDELLELFGPYGTVLSVEVSRDAETGISRGCGFVTMRSLAEARTAIN 187
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPR--PQRSASAPAR-----ETQHKLYVSNLSWKVRSTH 190
D ++ GR + V+ A R P + P E+++K+YV NL+W V+ H
Sbjct: 188 ALDGFDLDGREMFVKLAAHVIASRRNPGGLSHTPPMKDHIFESRYKIYVGNLAWSVQPQH 247
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F+ VS++++ + GRS YGF+SF++ EE EAA+ L+ E GR + ++
Sbjct: 248 LREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFSSAEELEAAL-QLNNTEFHGRDIIVR 305
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVT 125
T P + R K+YV NL WS ++ F CGTVV ++ KGG++R + F++
Sbjct: 220 TPPMKDHIFESRYKIYVGNLAWSVQPQHLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLS 279
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
+S EE +AA+ Q + E GR I V A
Sbjct: 280 FSSAEELEAAL-QLNNTEFHGRDIIVREA 307
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
++PRP+ +L+V NL + L E F +S +V ++ G S G
Sbjct: 123 RRPRPR------------ELFVCNLPRRCGVDELLELFGPYGTVLSVEVSRDAETGISRG 170
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
GFV+ + EA AI++LDG +L GR + +K
Sbjct: 171 CGFVTMRSLAEARTAINALDGFDLDGREMFVKL 203
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)
Query: 9 TSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETK 68
TS L + PF F P L ++ +TP + L + + ++ +
Sbjct: 26 TSFSLPSKPFKFHISLNSSPSLTLSLKTNRATPLFAAQ-EGETLTTEEGVVETEGLIDWE 84
Query: 69 PEQTQKQNIRR--------------KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK 114
PE + + KL+V NLP+ ++ LF P GTV E+I ++
Sbjct: 85 PEAAENETGGEDYAGGDFAEPSEDAKLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNR 144
Query: 115 -GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET 173
++R F FVTM++ EEA+A +F+ + +GR + V A + E
Sbjct: 145 ETDQSRGFGFVTMSTVEEAEAGAAKFNRYDYNGRPLTVNKAAPRGSRPEREERPPRTFEP 204
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
++YV NLSW++ + L + FS + VS++VV++ GRS G+GFV+ + ++E AI
Sbjct: 205 VLRVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAI 264
Query: 234 SSLDGKELMGRPLRLKFGQ 252
++LDG+ L GR +++ +
Sbjct: 265 AALDGQILEGRTIKVSVAE 283
>gi|79316226|ref|NP_001030925.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189111|gb|AEE27232.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 294
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 103/181 (56%), Gaps = 10/181 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH--KGGKNRNFAFVTMASPEEAQAAVN 137
+LYV N+P S+ +A++ ++F P GTV+ VE++ + G++R +VTM S A+ A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 138 QFDTQEVSGRIIRVEFAKKFK---KPRPQRSASAPAR----ETQHKLYVSNLSWKVRSTH 190
D EV GR +RV ++ + P+ S P + E+QHK+YV NL W +
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
LR FS VS++V+ + GR+ + F+SF + EE +AA+ S +G + GR + ++
Sbjct: 229 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIVRE 287
Query: 251 G 251
G
Sbjct: 288 G 288
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFA 122
+ + P++ + K+YV NLPW ++N F+ GT+V ++ K G+NR FA
Sbjct: 198 VLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFA 257
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F++ S EE AA++ TQ RII E +K
Sbjct: 258 FLSFTSGEERDAALSFNGTQYEGRRIIVREGIEK 291
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 151 VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
V A+ KKPRP +LYV N+ L + F +S +VV +
Sbjct: 96 VSKAEPVKKPRP------------CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRN 143
Query: 211 NE-GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
+ G S G G+V+ + A+ AI+SLDG E+ GR +R+++ + + N E
Sbjct: 144 PQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPE 197
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLPW + LF G+V E+I +K ++R F FV M++ E+ + A+N+
Sbjct: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
Query: 139 FDTQEVSGRIIRVEFA--KKFKKPRPQRS--ASAPARETQHKLYVSNLSWKVRSTHLREF 194
F E+ GR++ V A K+ + RP R+ + + +R++ +YV NL W V + L E
Sbjct: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFGSGSGSRDSGLSVYVGNLPWSVDAARLEEI 240
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F + N ++++V + GRS G+GFV+ +++ + AI++LDG+ L GR +R+ +
Sbjct: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 37/249 (14%)
Query: 21 SCLFP-KLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQ-DTTVETKPEQTQKQNIR 78
S FP KLP L + + P L + + S ++ D E+ E ++
Sbjct: 28 SAFFPSKLPQLRALAAAG-------WRQPLAPLAVALSSDVETDDAEESAGEFSEDL--- 77
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
+++V NLP+S A++ LF G+V VE+I K G++R F FVTM++ EE + AV
Sbjct: 78 -RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 136
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA--RE----------------TQHKLYV 179
Q + + GR I+V P P R S+P RE +++YV
Sbjct: 137 QLNGYVLDGRTIKVN-----SGPPPPRDQSSPRGFREQSSGGFRQQSSRGPSGGDNRVYV 191
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NLSW V + L F+ + + ++V+++ GRS G+GFV++ + EE E A+S+LDG
Sbjct: 192 GNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSNLDGT 251
Query: 240 ELMGRPLRL 248
+L GR +R+
Sbjct: 252 DLDGRQIRV 260
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W+ + + NLF G+V+ +I + G++R F FVT S EE + AV+
Sbjct: 188 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSN 247
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
D ++ GR IRV A+ ++PR
Sbjct: 248 LDGTDLDGRQIRVTVAEA-RQPR 269
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ +T EE E A+
Sbjct: 78 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVEQ 137
Query: 236 LDGKELMGRPLRLKFG 251
L+G L GR +++ G
Sbjct: 138 LNGYVLDGRTIKVNSG 153
>gi|296089011|emb|CBI38714.3| unnamed protein product [Vitis vinifera]
Length = 166
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 96/163 (58%), Gaps = 8/163 (4%)
Query: 98 LFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK- 155
+F P GTV +E+ ++ + G +R +VTM+S EA+AA+ D +V GR +RV F+
Sbjct: 1 MFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTD 60
Query: 156 -KFKKPRPQRSASAPAR----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
F++ + SAP R E+ +KLYV NL+W ++ LR FS VS++VV +
Sbjct: 61 MNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDR 120
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
G+ YGF+SF++ E EAA+ SL+GKE GR L + G K
Sbjct: 121 KAGKHRAYGFLSFSSAAECEAAM-SLNGKEFRGRSLVVSAGMK 162
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NL W+ +++N F+ GTVV ++ K GK+R + F++ +S E +AA++
Sbjct: 86 KLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMS- 144
Query: 139 FDTQEVSGRIIRVEFAKK 156
+ +E GR + V K
Sbjct: 145 LNGKEFRGRSLVVSAGMK 162
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 127/242 (52%), Gaps = 26/242 (10%)
Query: 21 SCLFP-KLPHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRR 79
S LFP K+P L S + P L + V + + VET+ + +++R
Sbjct: 27 SALFPSKIPQHRALA-------SAGWRHPLAPLAVAVAVS---SDVETEVAEEFSEDLR- 75
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++V NLP+S A++ LF G+V VE+I K G++R F FVTM++ EE + AV +
Sbjct: 76 -VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 134
Query: 139 FDTQEVSGRIIRVEFA----KKFKKPRPQRSASAPARE--------TQHKLYVSNLSWKV 186
+ + GR ++V K PR R S R+ +++YV NLSW V
Sbjct: 135 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNV 194
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ L F+ + + ++V+++ GRS G+GFV++ T +E + A+S+LDG ++ GR +
Sbjct: 195 DDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTDMDGRQI 254
Query: 247 RL 248
R+
Sbjct: 255 RV 256
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W+ + + NLF G+V+ +I + G++R F FVT + +E Q AV+
Sbjct: 184 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 243
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
D ++ GR IRV A+ ++PR
Sbjct: 244 LDGTDMDGRQIRVTVAEA-RQPR 265
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+++V NL + V S L F + +V+++ GRS G+GFV+ +T EE E A+
Sbjct: 75 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 134
Query: 236 LDGKELMGRPLRLKFG 251
L+G L GR L++ G
Sbjct: 135 LNGYVLDGRALKVNSG 150
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 109/189 (57%), Gaps = 11/189 (5%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPE 130
TQ+ R+L+V NLP V ++ +LF P GTV+ VE+ + + G +R FVTM S
Sbjct: 94 TQRSPRPRELFVCNLPRRCGVDDLLHLFQPYGTVLSVEVSRDPETGISRGCGFVTMRSLA 153
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR--PQRSASAPAR----ETQHKLYVSNLSW 184
A+ A+N D ++ GR + V+ A R P S +AP + E+ +K+YV NL+W
Sbjct: 154 AARTAMNALDGFDLDGREMFVKLASHVVSNRRNPSLSHTAPMKDHIFESPYKIYVGNLAW 213
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI----SSLDGKE 240
V+ HLRE F+ N VS++++ + R+ YGF+SF++ EE +AA+ ++ G++
Sbjct: 214 SVQPQHLRELFTQCGNIVSTRLLTDRKGARNRVYGFLSFSSPEELDAALKLNNTNFHGRD 273
Query: 241 LMGRPLRLK 249
++ R +K
Sbjct: 274 IIVREAHVK 282
>gi|15223293|ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|21554268|gb|AAM63343.1| ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|332189110|gb|AEE27231.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 293
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 9/180 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV N+P S+ +A++ ++F P GTV+ VE+ ++ + G++R +VTM S A+ A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 139 FDTQEVSGRIIRVEFAKKFK---KPRPQRSASAPAR----ETQHKLYVSNLSWKVRSTHL 191
D EV GR +RV ++ + P+ S P + E+QHK+YV NL W + L
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
R FS VS++V+ + GR+ + F+SF + EE +AA+ S +G + GR + ++ G
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIVREG 287
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFA 122
+ + P++ + K+YV NLPW ++N F+ GT+V ++ K G+NR FA
Sbjct: 197 VLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFA 256
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F++ S EE AA++ TQ RII E +K
Sbjct: 257 FLSFTSGEERDAALSFNGTQYEGRRIIVREGIEK 290
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 151 VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
V A+ KKPRP +LYV N+ L + F +S +V
Sbjct: 96 VSKAEPVKKPRP------------CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNP 143
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
G S G G+V+ + A+ AI+SLDG E+ GR +R+++ + + N E
Sbjct: 144 QTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPE 196
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 103/176 (58%), Gaps = 3/176 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + S E++ + G V E++ K K +R FAFVTM + E+A AA
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 138 QFDTQEVSGRIIRVEFAKK--FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + E+ GR I+V +K + P ++ + ++ +K+YV NL+ V S L++FF
Sbjct: 120 KLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFF 179
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
S N +S+KV +S+G+GFV+F++ E+ EAAISS + L G+ +R+ G
Sbjct: 180 SEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKG 235
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
F K F Q + +PA KLYV N+ V + L + + ++V+++
Sbjct: 41 FRKHFVVSSEQATVDSPA---LRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYS 97
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
RS + FV+ T E+A AA L+G E+ GR +++ +K
Sbjct: 98 KRSRRFAFVTMKTVEDANAAAEKLNGTEIGGREIKVNITEK 138
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + S E++ + G V E++ K K +R FAFVTM + E+A AA
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 138 QFDTQEVSGRIIRVEFAKK--FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + E+ GR I+V +K + P ++ + ++ +K+YV NL+ V S L++FF
Sbjct: 120 KLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFF 179
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
S N +S+KV +S+G+GFV+F++ E+ EAAISS + L G+ +R+
Sbjct: 180 SEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRV 232
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
F K F Q + +PA KLYV N+ V + L + + ++V+++
Sbjct: 41 FRKHFVVSSEQATVDSPA---LRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYS 97
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
RS + FV+ T E+A AA L+G E+ GR +++ +K
Sbjct: 98 KRSRRFAFVTMKTVEDANAAAEKLNGTEIGGREIKVNITEK 138
>gi|297843010|ref|XP_002889386.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335228|gb|EFH65645.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 298
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 9/180 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV N+P S+ +A++ ++F P GTV+ VE+ ++ + G++R +VTM S A+ A+
Sbjct: 114 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 173
Query: 139 FDTQEVSGRIIRVEFAKKFK---KPRPQRSASAPAR----ETQHKLYVSNLSWKVRSTHL 191
D EV GR +RV ++ + P+ S P + E+Q+K+YV NL W + L
Sbjct: 174 LDGTEVGGREMRVRYSVDMNPGARRNPEVLNSTPKKILMYESQYKVYVGNLPWFTQPDGL 233
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
R+ FS VS++V+ + G++ + F+SF EE +AA+ SL+G + GR + ++ G
Sbjct: 234 RDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNSEERDAAL-SLNGTQYEGRRIIVREG 292
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NLPW +++ F+ GT+V ++ K GKNR FAF++ + EE AA++
Sbjct: 218 KVYVGNLPWFTQPDGLRDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNSEERDAALSL 277
Query: 139 FDTQEVSGRIIRVEFAKK 156
TQ RII E +K
Sbjct: 278 NGTQYEGRRIIVREGIEK 295
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
A+ KKPRP +LYV N+ L + F +S +V G
Sbjct: 104 AEPVKKPRP------------CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTG 151
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
S G G+V+ + A+ AI+SLDG E+ GR +R+++
Sbjct: 152 ESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRY 188
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ +F G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 112 KLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 171
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSA 197
+ EV+GR + V A PR R AP E ++YV NL W V L + FS
Sbjct: 172 YHKFEVNGRFLTVNKAA----PRGSRPERAPREYEPSFRVYVGNLPWDVDDARLEQVFSE 227
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ +S++VV + GRS G+ FV+ A++ E AI +LDG+ L GR +R+ ++
Sbjct: 228 HGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGALDGQTLEGRAIRVNVAEE 283
>gi|242078001|ref|XP_002443769.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
gi|241940119|gb|EES13264.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
Length = 308
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 8/178 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVN 137
R+L+V NLP V ++ LF P GTV+ VEI + + G +R AFVTM S EA+ A+N
Sbjct: 123 RELFVCNLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAEARTAIN 182
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSAS--APAR----ETQHKLYVSNLSWKVRSTHL 191
D E+ GR + V+ A R + + P + E+ HK+YV NL+W V+ L
Sbjct: 183 ALDGFELDGREVFVKLASDVISNRKNVNLAHITPMKDHIFESPHKVYVGNLAWSVQPQDL 242
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
RE F+ VS++++ + GR+ YGF+SF++ EE EAA+ LD GR + +K
Sbjct: 243 RELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAAL-KLDRTVFFGRDIVVK 299
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL WS +++ LF CGTVV ++ KGG+NR + F++ +S EE +AA+ +
Sbjct: 227 KVYVGNLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAAL-K 285
Query: 139 FDTQEVSGRIIRVEFA 154
D GR I V+ A
Sbjct: 286 LDRTVFFGRDIVVKEA 301
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 1/174 (0%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ + +LF GTV E+I ++ ++R F FVTM++ EE + AV
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F E++GR++ V A + + + ++YV NL W+V L + FS +
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIFSEH 237
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
++VV++ GRS G+GFV+ +++ + AI++LDG+ L GR +R+ Q
Sbjct: 238 GKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAQ 291
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLPW A ++ +F+ G V D ++ + G++R F FVTM+S + A+
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 274
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSA 166
D Q + GR IRV A+ RP RS+
Sbjct: 275 LDGQSLDGRAIRVNVAQD----RPSRSS 298
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+ K++V NL + + S +L F ++V++ RS G+GFV+ +T EE + A+
Sbjct: 116 EDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAV 175
Query: 234 SSLDGKELMGRPL 246
G EL GR L
Sbjct: 176 EMFSGYELNGRVL 188
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 10/179 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NLP+ ++ N+F G V E+I ++ ++R F FVTM++ EEA AV
Sbjct: 113 KLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 172
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL---YVSNLSWKVRSTHLREFF 195
F + E++GR++ V A PR R AP RE L YV NL W V + L +
Sbjct: 173 FHSYELNGRLLTVNKAA----PRGSRPEKAP-REFCPLLSESYVGNLPWDVDNDRLEQLS 227
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA-EAAISSLDGKELMGRPLRLKFGQK 253
S + +S++VV + RS G+GFV+ A++ E +A + +LDG+ L GRP+R+ ++
Sbjct: 228 SEHGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGALDGESLEGRPIRVNVAEE 286
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 131/261 (50%), Gaps = 25/261 (9%)
Query: 10 SIFLTNHPFSFSCLFPKL---PHCIKLLHSSNST-PSLS--YNFPTRNLCLQVCSTLQDT 63
S+F N P FS L P L P+ SS S PSLS + F +R +DT
Sbjct: 12 SLFTKNSPQCFSSL-PSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDT 70
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFA 122
+ + T + ++L+V NLP+S A++ +F G V VE+I K G++R F
Sbjct: 71 FDDG--DDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFG 128
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK---------------KFKKPRPQRSAS 167
FVTM+S E +AA Q + V GR +RV +F RP+
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR 188
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+ + ++++V NL+W V + L F + +KV+++ GRS G+GFV+F++ +
Sbjct: 189 GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 228 EAEAAISSLDGKELMGRPLRL 248
E ++AI +LDG +L GR +R+
Sbjct: 249 EVDSAIRTLDGADLNGRAIRV 269
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P+ +L+V NL + V S L E F + +V+++ + GRS G+GFV+ ++ E
Sbjct: 78 PSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAE 137
Query: 229 AEAAISSLDGKELMGRPLRLKFG 251
EAA L+G + GR LR+ G
Sbjct: 138 VEAAAQQLNGYVVDGRELRVNAG 160
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 20/156 (12%)
Query: 108 VEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSA 166
VE++ + G++R F FVTM+S EEA AAV QF+ GR +RV P P R
Sbjct: 2 VEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCG-----PPPPRDG 56
Query: 167 SAPAR--------------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
SAP ++ +K+YV NL+W V ++ L FS + +KV+++ +
Sbjct: 57 SAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDS 116
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
GRS G+GFV++ + EE AIS+LDG +L GR +R+
Sbjct: 117 GRSRGFGFVTYGSAEEVNNAISNLDGIDLDGRQIRV 152
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL W + ++NLF+ G V+D ++I + G++R F FVT S EE A++
Sbjct: 80 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 139
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
D ++ GR IRV A+ KPR
Sbjct: 140 LDGIDLDGRQIRVTVAE--SKPR 160
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
+VV++ GRS G+GFV+ ++ EEA AA+ +G GRPLR+ G
Sbjct: 3 EVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCG 49
>gi|375152208|gb|AFA36562.1| plastid-specific 30S ribosomal protein 2, partial [Lolium perenne]
Length = 112
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 74/92 (80%), Gaps = 4/92 (4%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLYVSNL+WK RS +L+EFF A +NPVS+ VVF+ +SAGYGFVSF TKEEAE+A+S
Sbjct: 1 KLYVSNLAWKARSNNLKEFF-AQYNPVSANVVFDDK--KSAGYGFVSFGTKEEAESALSE 57
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEEDV 267
L+GKELMGRP+ L++ +++ +V +++ E E V
Sbjct: 58 LEGKELMGRPVLLRW-REDKEVVKADGEVEGV 88
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
KLYV NL W +K FA V + K K+ + FV+ + EEA++A+++
Sbjct: 1 KLYVSNLAWKARSNNLKEFFAQYNPVSANVVFDDK--KSAGYGFVSFGTKEEAESALSEL 58
Query: 140 DTQEVSGRII 149
+ +E+ GR +
Sbjct: 59 EGKELMGRPV 68
>gi|357440095|ref|XP_003590325.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479373|gb|AES60576.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 156
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASAPAR-ETQHKLYVSNLS 183
M + E+A+ A+ FD V GR I+V F + R Q ++ ++ HK+Y NL
Sbjct: 1 MGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLG 60
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W + S +LR+ F+ +S+KVV+E N G+S GYGFVSF T E+ E A+S+++G E+ G
Sbjct: 61 WDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQG 120
Query: 244 RPLRLKFGQKN 254
RPLRLK N
Sbjct: 121 RPLRLKLAVDN 131
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+Y NL W + ++ FA ++ +++ + GK+R + FV+ + E+ + A++
Sbjct: 53 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 112
Query: 139 FDTQEVSGRIIRVEFAKKFKKP 160
+ EV GR +R++ A +KP
Sbjct: 113 MNGVEVQGRPLRLKLAVDNRKP 134
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 93 AEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151
+E+ +F G V E+I + ++R F FVTM S EEA+ A+ F+ +V GR +RV
Sbjct: 4 SELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRTLRV 63
Query: 152 EF-------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS 204
F ++ +PR RS +++HK+Y NL W++ S L + F+ +S+
Sbjct: 64 NFPEVPRGGEREVMEPR-IRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSA 122
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
KV++E + GRS G+GFVSF + E AEAA+ +++G+E+ GRPLRL
Sbjct: 123 KVIYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEVDGRPLRLNL 168
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
S+ L E F ++V+ + RS G+GFV+ + EEA+ AI +G ++ GR LR
Sbjct: 3 SSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRTLR 62
Query: 248 LKF 250
+ F
Sbjct: 63 VNF 65
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ +F G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ GR + V K + P+R+ E ++YV NL W V ++ L + FS +
Sbjct: 116 LNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEH 172
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
VS++VV + GRS G+GFV+ +++ E AI++LDG+ L GR +R+ ++
Sbjct: 173 GKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 99/175 (56%), Gaps = 4/175 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ ++ LF GTV E+I ++ ++R F FVTM++ EE + AVN+
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F E+ GR++ V A PR ++ + + + YV NL W V ++ L + FS +
Sbjct: 183 FSGFELDGRLLTVNNAAPRGTPRLRQPRTF---NSGLRAYVGNLPWDVDNSSLEQLFSEH 239
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S++VV++ GR G+GFV+ + + E AI++LDG+ GR +R+ ++
Sbjct: 240 GKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEE 294
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + ++ LF+ G V +++ + G+ R F FVTM++ E A+
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAA 276
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D Q +GR IRV A++ RP+RS
Sbjct: 277 LDGQSFNGRAIRVNVAEE----RPRRS 299
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 101/180 (56%), Gaps = 15/180 (8%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RKLY+ N+P + + E+ + G V E++ K G++R FAFVTM + E+A AA+
Sbjct: 74 RKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIE 133
Query: 138 QFDTQEVSGRIIRVEFAKK---------FKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
+ + EV GR I+V +K F + + +P +K+YV N+S V +
Sbjct: 134 KLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSP-----YKVYVGNISSTVST 188
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ FFS +S+KV +S+GYGFV+F+++EE +AAISS + L G+P+R+
Sbjct: 189 ETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRV 248
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E++Q + K+YV N+ + S +KN F+ G V+ ++ + G K+ + FVT +S
Sbjct: 166 EESQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSS 225
Query: 129 PEEAQAAVNQFDTQEVSGRIIRV 151
EE AA++ F+ + G+ IRV
Sbjct: 226 EEEVDAAISSFNNALLEGQPIRV 248
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+ KLY+ N+ V + L + ++V+++ GRS + FV+ T E+A AAI
Sbjct: 73 ERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAI 132
Query: 234 SSLDGKELMGRPLRLKFGQK 253
L+ E+ GR +++ +K
Sbjct: 133 EKLNETEVGGRKIKVNITEK 152
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 98 LFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
LF GTV E+I ++ ++R F FVTM+S +EA+ AV +F+ +++GR++ V A
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA- 60
Query: 157 FKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRS 215
PR R AP E ++YV NL W V + L + FS + V ++VV++ GRS
Sbjct: 61 ---PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 117
Query: 216 AGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 118 RGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 155
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLPW ++ LF+ G VV+ ++ + G++R F FVTM+ +E A++
Sbjct: 78 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 137
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
D Q + GR IRV A++ + PR
Sbjct: 138 LDGQNLEGRAIRVNVAEE-RPPR 159
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ +F G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 49 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 108
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ GR + V K + P+R+ E ++YV NL W V ++ L + FS +
Sbjct: 109 LNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEH 165
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
VS++VV + GRS G+GFV+ +++ E AI++LDG+ L GR +R+ ++
Sbjct: 166 GKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 220
>gi|413941709|gb|AFW74358.1| hypothetical protein ZEAMMB73_309849 [Zea mays]
Length = 826
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVN 137
R+L+V NLP V ++ LF P GTV+ VEI + + G +R A VTM S EA+AA++
Sbjct: 641 RELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAID 700
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSAS--APAR----ETQHKLYVSNLSWKVRSTHL 191
D ++ GR + V+ A R + + P + ET HK+YV NL+W V+ L
Sbjct: 701 ALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDL 760
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
RE F+ VS++++ + GR+ YGF+SF++ +E E A+ LD GR + +K
Sbjct: 761 RELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL-KLDRTVFFGRDIVVK 817
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQ 138
+L+V NLP V ++ LF P GTV+ VEI + + G +R FVTM S EA+ A+N
Sbjct: 135 ELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNA 194
Query: 139 FDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPAR----ETQHKLYVSNLSWKVRSTHLR 192
D ++ GR + V+ + K+ + + P + E+ HK+YV N++W V LR
Sbjct: 195 LDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELR 254
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
E+FS VS++++ + GR YGF+SFA+ EE EAA+ LD GR + ++
Sbjct: 255 EYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAAL-KLDNTHFHGRNILVR 310
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+L+V NL + L E F +S ++ + G S G GFV+ + EA A+++
Sbjct: 135 ELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNA 194
Query: 236 LDGKELMGRPLRLKF 250
LDG +L GR + +K
Sbjct: 195 LDGFDLDGREMLVKL 209
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + + E++++FA GTV E++ K ++R F FVTM++ EEA AAV
Sbjct: 69 RKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVE 128
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREF 194
+ EV R I+V + F P RSA P ++Q+K+YV NL+ V + L+ F
Sbjct: 129 ALNGTEVGDRKIKVNVTESFL-PNIDRSAPEPEALFVDSQYKVYVGNLAKTVTTEVLKNF 187
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
FS N +S+ V +S GYGFV+F+++EE EAA+++ + EL G+ +R+
Sbjct: 188 FSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAELEGQLIRV 241
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL + + +KN F+ G ++ + G K++ + FVT +S EE +AAV
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 139 FDTQEVSGRIIRVEFA 154
F+ E+ G++IRV A
Sbjct: 229 FNNAELEGQLIRVNRA 244
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
AP KLYV N+ V + LR+ F+A+ ++V+++ RS +GFV+ +T E
Sbjct: 62 APEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAE 121
Query: 228 EAEAAISSLDGKELMGRPLRL 248
EA AA+ +L+G E+ R +++
Sbjct: 122 EANAAVEALNGTEVGDRKIKV 142
>gi|388515725|gb|AFK45924.1| unknown [Lotus japonicus]
Length = 290
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 17/209 (8%)
Query: 61 QDTTVETKPEQTQKQNIRR-----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-K 114
Q+ V E+ Q+ RR ++YV NLP S + A + +LF P GT++ VE+ ++ +
Sbjct: 79 QNDDVFKNEEEEQQPPQRRPRGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAE 138
Query: 115 GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASA------ 168
G++R +V M S A++A+ D +V GR +RV+F+ + R +A+A
Sbjct: 139 TGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYAS 198
Query: 169 PAR----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
P R E HKLYV NL+ V+ LR F N +S +V+ + +G++ Y F+SF
Sbjct: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++ E +AA+ SL+G E GR + ++ G +
Sbjct: 259 SEAERDAAM-SLNGTEFYGRTIVVREGAQ 286
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 131/261 (50%), Gaps = 25/261 (9%)
Query: 10 SIFLTNHPFSFSCLFPKL---PHCIKLLHSSNST-PSLS--YNFPTRNLCLQVCSTLQDT 63
S+F N P FS L P L P+ SS S PSLS + F +R +DT
Sbjct: 12 SLFTKNSPQCFSSL-PSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDT 70
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFA 122
+ + T + ++L+V +LP+S A++ +F G V VE+I K G++R F
Sbjct: 71 FDDG--DDTPSYSPNQRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFG 128
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK---------------KFKKPRPQRSAS 167
FVTM+S E +AA Q + V GR +RV +F RP+
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR 188
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+ + ++++V NL+W V + L F + +KV+++ GRS G+GFV+F++ +
Sbjct: 189 GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 228 EAEAAISSLDGKELMGRPLRL 248
E ++AI +LDG +L GR +R+
Sbjct: 249 EVDSAIRTLDGADLNGRAIRV 269
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P+ +L+V +L + V S L E F + +V+++ + GRS G+GFV+ ++ E
Sbjct: 78 PSYSPNQRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAE 137
Query: 229 AEAAISSLDGKELMGRPLRLKFG 251
EAA L+G + GR LR+ G
Sbjct: 138 VEAAAQQLNGYVVDGRELRVNAG 160
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R+LYV N+P + + E+ + G V E++ K G++R FAFVTM + E+A A +
Sbjct: 70 RRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIE 129
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP---ARETQ-----HKLYVSNLSWKVRST 189
+ + E+ GR ++V +K P + P A E++ HK+YV NL+ V +
Sbjct: 130 KLNGTEIGGREVKVNVTEK-----PLSTPDLPLLQAEESEFIDSPHKVYVGNLAKTVTTD 184
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ FFS +S+KV +S+GYGFV+F+++E+ EAAISS + L G+ +R+
Sbjct: 185 TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRV 243
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+LYV N+ V + L + + ++V+++ GRS + FV+ T E+A A I
Sbjct: 71 RLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 236 LDGKELMGRPLRLKFGQK 253
L+G E+ GR +++ +K
Sbjct: 131 LNGTEIGGREVKVNVTEK 148
>gi|224009309|ref|XP_002293613.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971013|gb|EED89349.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 189
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 18/190 (9%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++YV NL WS ++K+ CG V+ +I++ G+++ V +SPEEA AV +
Sbjct: 1 RVYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEEL 60
Query: 140 DTQEVSGRIIRV-------------EFAKKFKKPRPQRSA---SAPARETQHKLYVSNLS 183
+ E+SGR I V F R ++ +PA E +L+V NLS
Sbjct: 61 NNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGC-QLFVGNLS 119
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W+ L++ F V V E N+GR G+G V F + ++A+AAI L+G + MG
Sbjct: 120 WETGWRELKDHFR-QCGEVDRAEVAEGNDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMG 178
Query: 244 RPLRLKFGQK 253
RPL ++ K
Sbjct: 179 RPLDVRVDNK 188
>gi|145354241|ref|XP_001421399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 288
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 1/172 (0%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ Y NL W S + + A G VV E+ + GG+++ +A V A+PEEAQ A+ Q
Sbjct: 113 RCYFGNLAWETSEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQ 172
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
E+ GR I V + + R + P + ++ V NL W S LR+ F
Sbjct: 173 MHNSEIQGRSIIVRVERPGAGQKSARVETRPENSSGLQIVVRNLPWTTTSEDLRQVFQQV 232
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
N V++ V ++ GRS G+G V F T+E+A+AAI +G EL RP+++K
Sbjct: 233 GNVVNAVAVCHTDTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKL 284
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+LYV N+PWS ++ +++ LFA CG V V+I + G++R + V S EAQAAV +
Sbjct: 10 RLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQGRSRGYGLVEFNSEAEAQAAVTRM 69
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS----------ASAPARETQHKLYVSNLSWKVRST 189
D + R I V ++ K P APA + Y NL+W+
Sbjct: 70 DGTPLGDRTITV---REDKAPTKAAGGAKKASASVLGDAPAGGDGCRCYFGNLAWETSEE 126
Query: 190 HLREFFSA-NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L ++ N V +V +S GRS G+ V FAT EEA+ AI + E+ GR + +
Sbjct: 127 TLTSHCASFGVNVVQCEVARQSG-GRSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIV 185
Query: 249 KF-----GQKN 254
+ GQK+
Sbjct: 186 RVERPGAGQKS 196
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R+LYV N+P + + E+ + G V E++ K G++R FAFVTM + E+A A +
Sbjct: 70 RRLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIE 129
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP---ARETQ-----HKLYVSNLSWKVRST 189
+ + E+ GR I+V +K P + P A E++ HK+YV NL+ V +
Sbjct: 130 KLNGTELGGREIKVNVTEK-----PLSTLDLPLLQAEESEFIDSPHKVYVGNLAKTVTTD 184
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ FFS +S+KV +S+GYGFV+F ++E+ EAAISS + L G+ +R+
Sbjct: 185 TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLLEGQTIRV 243
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+LYV N+ V + L + + ++V+++ GRS + FV+ T E+A A I
Sbjct: 71 RLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 236 LDGKELMGRPLRLKFGQK 253
L+G EL GR +++ +K
Sbjct: 131 LNGTELGGREIKVNVTEK 148
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 101/178 (56%), Gaps = 11/178 (6%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R+LYV N+P + AE+ + G V E++ K G++R FAFVTM + E+A AA+
Sbjct: 70 RRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIE 129
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSAS-APARETQ-----HKLYVSNLSWKVRSTHL 191
+ + E+ GR I+V +KP S A E+Q HK+YV NL+ V + L
Sbjct: 130 KLNGTEIGGREIKVNIT---EKPLLTLDMSLLQAEESQFIDSPHKVYVGNLARTVTTDTL 186
Query: 192 REFFSANFNPV-SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+FFS V S+KV +S+G+GFVSF+++E+ EAAISS + L G+ +R+
Sbjct: 187 TQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSCNNAFLDGQRIRV 244
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 157 FKKPRPQR-------SASAPARETQ---HKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
FK +P+R +A AP + +LYV N+ + S L + ++V
Sbjct: 42 FKAIKPKRPIAVSAVTAEAPVATSDVAARRLYVGNIPRTLDSAELARIVEEHGAVEKAEV 101
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+++ GRS + FV+ T E+A AAI L+G E+ GR +++ +K
Sbjct: 102 MYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEK 148
>gi|356520229|ref|XP_003528766.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 277
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 8/197 (4%)
Query: 62 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRN 120
D +E + E+ ++ ++YV NLP + ++F P GT++ VE+ + + +++
Sbjct: 76 DDVLEDEEERDKRLGKACEVYVCNLPRRCDATYLLDMFRPYGTILSVEVCRDAETNESKG 135
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP--QRSASAPAR----ETQ 174
+VT+ S A+ AV D +V GR +RV F+ + R + S+ R E+
Sbjct: 136 CGYVTLGSIYSARNAVAALDGSDVGGRELRVRFSIEMNSKRRSFNKMNSSTKRISYYESP 195
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
HKLYV NL+ VR LR+ FS N VS++V+ + +G S Y F+SF ++ E +AA+
Sbjct: 196 HKLYVGNLAKTVRPEQLRDLFSRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAM- 254
Query: 235 SLDGKELMGRPLRLKFG 251
SL+G E GR L +K G
Sbjct: 255 SLNGTEYYGRTLIVKEG 271
>gi|212722626|ref|NP_001131649.1| uncharacterized protein LOC100193009 [Zea mays]
gi|194692152|gb|ACF80160.1| unknown [Zea mays]
Length = 314
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVN 137
R+L+V NLP V ++ LF P GTV+ VEI + + G +R A VTM S EA+AA++
Sbjct: 129 RELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAID 188
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSAS--APAR----ETQHKLYVSNLSWKVRSTHL 191
D ++ GR + V+ A R + + P + ET HK+YV NL+W V+ L
Sbjct: 189 ALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDL 248
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
RE F+ VS++++ + GR+ YGF+SF++ +E E A+ LD GR + +K
Sbjct: 249 RELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL-KLDRTVFFGRDIVVK 305
>gi|6715645|gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 95/173 (54%), Gaps = 18/173 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH--KGGKNRNFAFVTMASPEEAQAAVN 137
+LYV N+P S+ +A++ ++F P GTV+ VE++ + G++R +VTM S A+ A+
Sbjct: 465 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 524
Query: 138 QFDT---------QEVSGRIIRVEFAKKFK---KPRPQRSASAPAR----ETQHKLYVSN 181
D QEV GR +RV ++ + P+ S P + E+QHK+YV N
Sbjct: 525 SLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGN 584
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
L W + LR FS VS++V+ + GR+ + F+SF + EE +AA+S
Sbjct: 585 LPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 637
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFA 122
+ + P++ + K+YV NLPW ++N F+ GT+V ++ K G+NR FA
Sbjct: 563 VLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFA 622
Query: 123 FVTMASPEEAQAAVN 137
F++ S EE AA++
Sbjct: 623 FLSFTSGEERDAALS 637
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 22/110 (20%)
Query: 151 VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
V A+ KKPRP +LYV N+ L + F +S +VV +
Sbjct: 452 VSKAEPVKKPRP------------CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRN 499
Query: 211 NE-GRSAGYGFVSFATKEEAEAAISSLDG---------KELMGRPLRLKF 250
+ G S G G+V+ + A+ AI+SLDG +E+ GR +R+++
Sbjct: 500 PQTGESRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRY 549
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPC---GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
+ YV NL W + ++L A C GTVV E+ K GG+++ + V +P+ A +A+
Sbjct: 110 RCYVGNLAWETNE---ESLIAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAI 166
Query: 137 NQFDTQEVSGR--IIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
N ++ GR I+R+E A K +A P + ++ V NL W S LR+
Sbjct: 167 NTLHNSDLQGRSIIVRLERAGGANKSGGP-NAGRPEASSGLQIVVRNLPWSTTSEDLRQV 225
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F + ++ V ++ GRS G+G V F T+E+A+AAI +G EL RP+++K
Sbjct: 226 FQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKL 281
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 9/178 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+LYV N+PWS +V E++ +F+ CGT+ V+I + G++R + V ++ EAQ A+
Sbjct: 8 RLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQTL 67
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSAS-------APARETQHKLYVSNLSWKVRSTHLR 192
D + R I V K K P +S PA + + YV NL+W+ L
Sbjct: 68 DGHTLGDRNITVREDKAPTKSAPSKSGGNRSTIGDTPAADG-CRCYVGNLAWETNEESLI 126
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
S V ++V + GRS G+G V F T + A +AI++L +L GR + ++
Sbjct: 127 AHCSQVGTVVQAEVAKQPG-GRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVRL 183
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++LYV N+ W LR FS ++ + +GRS GYG V ++ EA+ AI
Sbjct: 7 NRLYVGNIPWSTTVDELRGIFSG-CGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQ 65
Query: 235 SLDGKELMGRPLRLK 249
+LDG L R + ++
Sbjct: 66 TLDGHTLGDRNITVR 80
>gi|7267547|emb|CAB78028.1| putative protein [Arabidopsis thaliana]
Length = 225
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 85/131 (64%), Gaps = 10/131 (7%)
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK----PRPQRSASAPARETQHKLY 178
F+ MASPEEA A ++ E GR ++V++AK KK PR P+ L+
Sbjct: 59 FIEMASPEEASTAFISLESYEYEGRRLKVDYAKTKKKKTYAPR-----ETPSPVPTFNLF 113
Query: 179 VSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
V+NL+++ R+ HL+EFF A+ N VS++V+F N RS+GYGFVSF TK++AEAA+
Sbjct: 114 VANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQ 173
Query: 238 GKELMGRPLRL 248
GK+ +GRP+RL
Sbjct: 174 GKDFLGRPIRL 184
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLF-APCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
L+V NL + +K F A G VV E+I H+ ++ + FV+ + ++A+AA+ +
Sbjct: 112 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 171
Query: 139 FDTQEVSGRIIRVEFAKKFKK 159
F ++ GR IR+ +K+F K
Sbjct: 172 FQGKDFLGRPIRLAKSKQFVK 192
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 7/125 (5%)
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLS 183
M++ EEA A+ F ++SGR++ V A + + RPQR APA + YV NL
Sbjct: 1 MSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQF-APA----FRAYVGNLP 55
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W+V + L + FS + V +KVV++ GRS G+GFVS +KEE AIS+LDG+EL G
Sbjct: 56 WQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDG 115
Query: 244 RPLRL 248
RPLR+
Sbjct: 116 RPLRV 120
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VVD +++ + G++R F FV+M S EE A++
Sbjct: 48 RAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISA 107
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 108 LDGQELDGRPLRVNVAAE----RPQRG 130
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R+LYV N+P + + E++ + G + E++ K G++R F FVTM + E+A A +
Sbjct: 84 RRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-----HKLYVSNLSWKVRSTHLR 192
+ + E+ GR I+V +K A+ A ++Q +K+Y+ NL+ V + L+
Sbjct: 144 KLNDTEIGGRKIKVNITEK--PLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLK 201
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+FFS + +KV +S G+GFVSF+++EE EAAI +L+ L G+ +R+
Sbjct: 202 DFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
E +LYV N+ + + LR + ++V+++ GRS +GFV+ T E+A A
Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 232 AISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
I L+ E+ GR +++ +++E E D++ Q+ +S
Sbjct: 141 VIEKLNDTEIGGRKIKV-------NITEKPLEGMDIATTQAEDS 177
>gi|384248197|gb|EIE21682.1| G-strand telomere binding protein 1 [Coccomyxa subellipsoidea
C-169]
Length = 222
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 36/209 (17%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
I ++ +V NL W S ++K+ F GTVV +++ G+++ + V +PEEA AAV
Sbjct: 13 IGKRCFVGNLAWKTSWQDLKDKFREIGTVVYANVVRDDAGRSKGWGIVEFETPEEAVAAV 72
Query: 137 NQFDTQEVSGRIIRV------EFAKKFKKPR----------PQRSASAPARETQH----- 175
N F+ +E++GR I V K++ K P+RS A+++Q
Sbjct: 73 NTFNGEEIAGRKILVREDREDRDVKQYNKDHGIERPEGARPPRRSRRGTAQQSQEGAKLN 132
Query: 176 --------------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
++ V + WK R L F V +KVV S +GRS GYG V
Sbjct: 133 GDHASEPLQEPSGLQVVVQGIPWKYRDEDLSALFEDCAPAVEAKVVI-SKDGRSRGYGTV 191
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
F ++E+A+ A+ L EL GR L +K
Sbjct: 192 RFDSREDADKAVRELHSTELEGRTLTVKI 220
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+ +V NL+WK L++ F V + VV + + GRS G+G V F T EEA AA+++
Sbjct: 16 RCFVGNLAWKTSWQDLKDKFREIGTVVYANVVRD-DAGRSKGWGIVEFETPEEAVAAVNT 74
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKE 263
+G+E+ GR + ++ +++ DV + NK+
Sbjct: 75 FNGEEIAGRKILVREDREDRDVKQYNKD 102
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++ V +PW + ++ LF C V+ +++ K G++R + V S E+A AV +
Sbjct: 147 QVVVQGIPWKYRDEDLSALFEDCAPAVEAKVVISKDGRSRGYGTVRFDSREDADKAVREL 206
Query: 140 DTQEVSGRIIRVEFAK 155
+ E+ GR + V+ K
Sbjct: 207 HSTELEGRTLTVKIDK 222
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 18/171 (10%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + + E+ +FA GTV E++ K G++R F FVTM++PEEA AA+
Sbjct: 70 RKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIE 129
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ EV GR I+V + F P RSA P ++V + + R T L E SA
Sbjct: 130 SLNETEVGGRKIKVNVTESF-LPNIDRSAPEP-----EPVFVDS---QYRFT-LGEVLSA 179
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ + +S GYGFV+F+++EE EAA+S+ + EL G+P+R+
Sbjct: 180 TVSRIPGT-------AKSKGYGFVTFSSEEEVEAAVSTFNNAELEGQPIRV 223
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
AP KLYV N+ V + L F+ + ++V+F+ GRS +GFV+ +T E
Sbjct: 63 APEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPE 122
Query: 228 EAEAAISSLDGKELMGRPLRL 248
EA AAI SL+ E+ GR +++
Sbjct: 123 EANAAIESLNETEVGGRKIKV 143
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 14/179 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
++LY+ N+P + E+ + G V E++ K G++R FAFVTM + E+A A +
Sbjct: 80 KRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANAVIE 139
Query: 138 QFDTQEVSGRIIRVEFAKK--------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ + ++ GR I+V +K F + + +P HK+YV NL+ V S
Sbjct: 140 KLNGTQIGGREIKVNITEKPLASGDLSFLQLEESQFVDSP-----HKVYVGNLAKTVTSE 194
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ FFS +S+KV +S+GYGFVSF+ +E+ EAAISS + L G+ +R+
Sbjct: 195 ILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISSFNNSLLEGQKIRV 253
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
E +LY+ N+ V + L + + ++V+++ GRS + FV+ T E+A A
Sbjct: 77 EAAKRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANA 136
Query: 232 AISSLDGKELMGRPLRLKFGQK 253
I L+G ++ GR +++ +K
Sbjct: 137 VIEKLNGTQIGGREIKVNITEK 158
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E++Q + K+YV NL + + +KN F+ G V+ ++ + G K+ + FV+ +
Sbjct: 171 EESQFVDSPHKVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSE 230
Query: 129 PEEAQAAVNQFDTQEVSGRIIRV 151
E+ +AA++ F+ + G+ IRV
Sbjct: 231 EEDVEAAISSFNNSLLEGQKIRV 253
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 67 TKPEQTQKQNIRRK----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFA 122
+K E+ +K + K +YV N ++K + A G +V ++++ GK++ F
Sbjct: 178 SKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFG 237
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA---RETQHK--- 176
FV+ +PEEA+ AVN + +E+ GR + AKK R +R+A A ++ Q +
Sbjct: 238 FVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKK----RAERAAEVKAEIEKKRQERINR 293
Query: 177 -----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
LY+ NL + LRE FS + +SS V + ++G S G+GFV F++ EEA
Sbjct: 294 FQGVNLYIKNLDDPIDDERLREEFSP-YGTISSAKVMKDDKGNSKGFGFVCFSSPEEATK 352
Query: 232 AISSLDGKELMGRPLRLKFGQKNDD 256
A++ ++G+ L+ +PL + Q+ ++
Sbjct: 353 AVTEMNGRILISKPLYVALAQRREE 377
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G+V+ + + + ++ +A+V P A+ A++
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTM 74
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ + ++ P ++S +++ NL + + L + FSA
Sbjct: 75 NFDPIKGRPCRIMWQQR--DPSLRKSGVG-------NIFIKNLDKSIDNKSLYDTFSAFG 125
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S K+ + G GYGFV F T++ A AI+ +DG L
Sbjct: 126 NILSCKIA-QDELGNPKGYGFVHFETEDAALEAIARVDGMLL 166
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 65 VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
V+ + E+ +++ I R LY+ NL ++ F+P GT+ +++K G ++
Sbjct: 279 VKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKG 338
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVS 180
F FV +SPEEA AV + + + + + + V A++ R +R A A QH +S
Sbjct: 339 FGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQR----REERKAQLAA---QHMHRIS 391
Query: 181 NL 182
L
Sbjct: 392 GL 393
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L+ V L E FS + +S +V + RS GY +V+F AE A+ ++
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTM 74
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP R+ + Q++ + +S
Sbjct: 75 NFDPIKGRPCRIMWQQRDPSLRKSG 99
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV N S E ++LF CG +V +++ GK+R F FV+ + E AQ AV +
Sbjct: 202 LYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLN 261
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E R + V A+K ++ Q+ R LYV NL + LR+
Sbjct: 262 EKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQ 321
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F ANF ++S V +G S G+GFV F++ EEA A++ ++G+ ++ +PL + Q+
Sbjct: 322 EF-ANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQR 380
Query: 254 NDD 256
+D
Sbjct: 381 KED 383
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 19/241 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQT----QKQNIRR---- 79
I++ + + SL Y NF N + TL V KP + + ++RR
Sbjct: 48 IRVCRDAITRRSLGYAYVNFQQPNDAERALDTLNFDPVNGKPCRIMWSQRDPSLRRSGVG 107
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL I + F+ G ++ +I + G ++ +AFV + E A A+ +
Sbjct: 108 NIFIKNLEKDIDNKAIYDTFSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 140 DTQEVSGRIIRVEFAKKF--KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ +SG+ + F F +K R ++ + A+ T LYV N + R+ F
Sbjct: 168 NGMLLSGKKV---FVGHFMSRKERMEKIGNLAAKYT--NLYVKNFRDDISDDEFRDLFE- 221
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
+ S VV + G+S G+GFVS+ T E A+ A+ +L+ KE R + + QK +
Sbjct: 222 QCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSER 281
Query: 258 S 258
S
Sbjct: 282 S 282
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ +++ ++R LYV NL A+++ FA GT+ +++ + G +R F FV
Sbjct: 290 EQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVC 349
Query: 126 MASPEEAQAAVNQFDTQEVSGRII 149
+SPEEA AV E++GRII
Sbjct: 350 FSSPEEATKAVT-----EMNGRII 368
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV +L+ V L E F++ P+SS +V ++ RS GY +V+F +AE A+ +
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNST-GPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDT 79
Query: 236 LDGKELMGRPLRLKFGQKNDDVSES 260
L+ + G+P R+ + Q++ + S
Sbjct: 80 LNFDPVNGKPCRIMWSQRDPSLRRS 104
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
KLY+ NL W + +LF+ V + G++R F F T+ S E A +A+
Sbjct: 75 KLYIGNLSWDMDDQALNDLFSQYQASDCVIVTDRNTGRSRGFGFATVPSQEMADSAIAAL 134
Query: 140 DTQEVSGRIIRVEFA-----KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ + GR +RV + + ++ RP+R+ A R K+Y NLSW + L++
Sbjct: 135 NDSDQFGRQMRVVISLPPEERPAREQRPKRNWDADGR----KVYFGNLSWGMDHLDLQDL 190
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ N S+++ + GRS G+GFV+ ++++EAE ++ L+G+++ GR LR+ N
Sbjct: 191 CAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQLNGQDVDGRVLRVNIATSN 250
Query: 255 DD 256
D
Sbjct: 251 KD 252
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + + E++++FA GTV E++ K ++R F FVTM++ EEA AAV
Sbjct: 69 RKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVE 128
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREF 194
+ EV R I+V + F P RSA P ++Q+K+YV NL+ V + L+ F
Sbjct: 129 ALNGTEVGDRKIKVNVTESFL-PNIDRSAPEPEALFVDSQYKVYVGNLAKTVTTEVLKNF 187
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
FS N +S+ V +S GYGFV+F+++EE EAA+++ +
Sbjct: 188 FSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFN 230
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
AP KLYV N+ V + LR+ F+A+ ++V+++ RS +GFV+ +T E
Sbjct: 62 APEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAE 121
Query: 228 EAEAAISSLDGKELMGRPLRL 248
EA AA+ +L+G E+ R +++
Sbjct: 122 EANAAVEALNGTEVGDRKIKV 142
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RKLYV N+P + + E++++FA GTV E++ K ++R F FVTM++ EEA AAV
Sbjct: 69 RKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVE 128
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREF 194
+ EV R I+V + F P RSA P ++Q+K+YV NL+ V + L+ F
Sbjct: 129 ALNGTEVGDRKIKVNVTESFL-PNIDRSAPEPEALFVDSQYKVYVGNLAKTVTTEVLKNF 187
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
FS N +S+ V +S GYGFV+F+++EE EAA+++ +
Sbjct: 188 FSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFN 230
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
AP KLYV N+ V + LR+ F+A+ ++V+++ RS +GFV+ +T E
Sbjct: 62 APEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAE 121
Query: 228 EAEAAISSLDGKELMGRPLRL 248
EA AA+ +L+G E+ R +++
Sbjct: 122 EANAAVEALNGTEVGDRKIKV 142
>gi|303284108|ref|XP_003061345.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
gi|226457696|gb|EEH54995.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
Length = 301
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 9/180 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLF------APCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
+ Y+ NL W + + F + G+VV+ E+ K GG+++ + V SP A+
Sbjct: 118 RCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAE 177
Query: 134 AAVNQFDTQEVSGR--IIRVE-FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
+A+ ++ GR I+R+E K P +A P + ++ V NL W S
Sbjct: 178 SAIATLHNSDLQGRSIIVRLERAGGATKGPGGGANAGRPEASSGLQIVVRNLPWTTTSED 237
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
LR+ F N V + V ++ GRS G+G V F T+E+A+AAI +G EL RP+++K
Sbjct: 238 LRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELESRPMQIKL 297
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 30/195 (15%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+LYV NLPWS V E++ +F+ CG + V+I K + G++R + V +S EAQAA+ Q
Sbjct: 9 RLYVGNLPWSTDVDELRAIFSSCGAITHVDIPKGRQGRSRGYGIVEYSSAAEAQAAIAQL 68
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSAS-------------------APARETQHKLYVS 180
+ + R + V + P ++A+ PA E + Y+
Sbjct: 69 EGHTLGDRNLTVR-----EDNAPTKTANSGGGSKSGGGRGSGNVMGETPAAEG-CRCYIG 122
Query: 181 NLSWKVRSTHLREFFS--ANFNPVSSKV---VFESNEGRSAGYGFVSFATKEEAEAAISS 235
NL+W+ + L F +F+ V S V V + GRS G+G V F + AE+AI++
Sbjct: 123 NLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAESAIAT 182
Query: 236 LDGKELMGRPLRLKF 250
L +L GR + ++
Sbjct: 183 LHNSDLQGRSIIVRL 197
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++LYV NL W LR FS+ ++ + + +GRS GYG V +++ EA+AAI+
Sbjct: 8 NRLYVGNLPWSTDVDELRAIFSS-CGAITHVDIPKGRQGRSRGYGIVEYSSAAEAQAAIA 66
Query: 235 SLDGKELMGRPLRLK 249
L+G L R L ++
Sbjct: 67 QLEGHTLGDRNLTVR 81
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 17/199 (8%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
EQT +YV NL +++ ++K LF P GT+ ++K GK+R F FV +P
Sbjct: 205 EQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNP 264
Query: 130 EEAQAAVNQFDTQEVSG-RIIRVEFAKKFKKPRPQRSASAPARETQHK-----------L 177
+ A AAV + + ++ R++ V A++ + +R A A+ Q + L
Sbjct: 265 DSAAAAVERLNGTTINNDRVLYVGRAQR----KAEREAELKAKIEQERISRYEKLQGANL 320
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
Y+ NL L++ FS S KV+ +SN GRS G GFVSF+T EEA A++ ++
Sbjct: 321 YLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN-GRSKGSGFVSFSTPEEASKALNEMN 379
Query: 238 GKELMGRPLRLKFGQKNDD 256
GK + +PL + Q+ ++
Sbjct: 380 GKLIGRKPLYVAVAQRKEE 398
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + ++ +LF+ + + + + + ++ +A+V A+ ++A A+
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSAN 198
+ ++G+ IR+ F+ QR S R++ H +++ NL + + L + F+A
Sbjct: 97 NFTPLNGKPIRIMFS--------QRDPSI--RKSGHGNVFIKNLDTSIDNKALHDTFAAF 146
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+S KV +S+ G+S GYGFV F +E A+ AI L+G
Sbjct: 147 GTVLSCKVALDSS-GQSKGYGFVQFDNEEAAQNAIKRLNG 185
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS S +V + + S GY +V+FA ++A A+ L
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ F Q++ + +S
Sbjct: 97 NFTPLNGKPIRIMFSQRDPSIRKSG 121
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 5/176 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V L W+ + F CGTVV + + GK+R FA+V +SP EAQ AV +
Sbjct: 112 VFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEM 171
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASA---PARETQHKLYVSNLSWKVRSTHLREFFS 196
+ +++ GR + V+ ++ ++P P++ A + L+V NLSW L F
Sbjct: 172 NGKQIDGREVNVDISQP-RQPNPEKRAQVFGDSESQPSTTLFVGNLSWNTTEDGLWTAFG 230
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ ++ + G+ G+G+V F +E A A ++ GK+L GR LRL + Q
Sbjct: 231 EFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTLRLDYSQ 286
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 17/199 (8%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
EQT +YV NL +++ ++K LF P GT+ ++K GK+R F FV +P
Sbjct: 205 EQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNP 264
Query: 130 EEAQAAVNQFDTQEVSG-RIIRVEFAKKFKKPRPQRSASAPARETQHK-----------L 177
+ A AAV + + ++ R++ V A++ + +R A A+ Q + L
Sbjct: 265 DSAAAAVERLNGTTINNDRVLYVGRAQR----KAEREAELKAKIEQERISRYEKLQGANL 320
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
Y+ NL L++ FS S KV+ +SN GRS G GFVSF+T EEA A++ ++
Sbjct: 321 YLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN-GRSKGSGFVSFSTPEEASKALNEMN 379
Query: 238 GKELMGRPLRLKFGQKNDD 256
GK + +PL + Q+ ++
Sbjct: 380 GKLIGRKPLYVAVAQRKEE 398
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + ++ +LF+ + + + + + ++ +A+V A+ ++A A+
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSAN 198
+ ++G+ IR+ F+ QR S R++ H +++ NL + + L + F+A
Sbjct: 97 NFTPLNGKPIRIMFS--------QRDPSI--RKSGHGNVFIKNLDTSIDNKALHDTFAAF 146
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+S KV +S+ G+S GYGFV F +E A+ AI L+G
Sbjct: 147 GTVLSCKVALDSS-GQSKGYGFVQFDNEEAAQNAIKRLNG 185
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS S +V + + S GY +V+FA ++A A+ L
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ F Q++ + +S
Sbjct: 97 NFTPLNGKPIRIMFSQRDPSIRKSG 121
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ FS E + LF P GT+ + + K + GK++ F FV + E A AV + +
Sbjct: 110 IYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELN 169
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K ++ + Q ++ R ++++ L+V NL + S L E
Sbjct: 170 DKEINGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEE 229
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F++ EEA AI+ ++ + ++G+PL + Q+
Sbjct: 230 EFKP-FGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQR 288
Query: 254 ND 255
D
Sbjct: 289 KD 290
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 88/185 (47%), Gaps = 6/185 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV + E A+AA+ +
Sbjct: 17 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVN 76
Query: 141 TQEVSGRIIRVEFAKKF-KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ R + V K KK R + A T +YV N+ + + F F
Sbjct: 77 GMLLNDREVYV--GKHISKKDRESKFEEMKANYT--NIYVKNIDLEFSDEEFEKLFVP-F 131
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
++S + + +G+S G+GFV++ T E A A+ L+ KE+ G+ + + QK + E
Sbjct: 132 GTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERME 191
Query: 260 SNKEE 264
K++
Sbjct: 192 ELKKQ 196
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G++R F FV EEAQ AV +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q +R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E + S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEGSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ K G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R+A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N GRS +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQK 268
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G+++ + + + ++ +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ +++ + P ++S +++ NL + + L + FS
Sbjct: 73 NFEMLKGQPIRIMWSQ--RDPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + + R G+GFV F T E A+ AI++++G L R
Sbjct: 124 NILSCKVACDKHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDR 166
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS + +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL S + +K F G +VDV+++ K N+AFV A +A A+
Sbjct: 79 RVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDKKSNYVNYAFVEYAKAHDASVAL-- 136
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
Q ++G I++E K K R +S + ++ L+V +L+ + L F
Sbjct: 137 ---QTLNG--IQIE-NNKVKINRAFQSQQSTTDDSTFNLFVGDLNIDIDDDTLSRSFKDF 190
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
+ + + V+++ GRS GYGFVSFA +E+A+ A+ + GKEL GRP+R+ + K D+
Sbjct: 191 PSYIQAHVMWDMQTGRSRGYGFVSFADQEQAQKAMEEMQGKELNGRPIRINWATKRDNNQ 250
Query: 259 ESN 261
+ N
Sbjct: 251 QQN 253
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 165 SASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+A+ RET + LYV NL + L+++F V KV+ + + Y FV +
Sbjct: 68 NATHGGRETSDRVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDK-KSNYVNYAFVEY 126
Query: 224 ATKEEAEAAISSLDGKELMGRPLRL 248
A +A A+ +L+G ++ +++
Sbjct: 127 AKAHDASVALQTLNGIQIENNKVKI 151
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
KLYV NL W + + ++FA I G++R F FV + S E A+ A+ +
Sbjct: 44 KLYVGNLSWGVDDSMLTDVFAEYDASGIAVISDMNTGRSRGFGFVEVPSQEIAEKAIAEL 103
Query: 140 DTQEVSGRIIRVEFAKKFKKPR---PQRSASAPARETQH-----KLYVSNLSWKVRSTHL 191
D +V GR IRV ++ R +R AP RE + K+Y NLSW + L
Sbjct: 104 DGADVDGRPIRVNISEARSSRREYDGERGERAP-RERNYDFDARKVYFGNLSWGMDHLDL 162
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ S+++ + GRS G+GFV+ ++ E+AE ++ L+G+++ GR LR+
Sbjct: 163 QDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNGLNGQDVDGRVLRVNI 221
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 28/152 (18%)
Query: 31 IKLLHSSNSTPSLSYNF---PTRNLCLQVCSTLQDTTVETKPEQTQKQNIR--------- 78
I ++ N+ S + F P++ + + + L V+ +P + R
Sbjct: 71 IAVISDMNTGRSRGFGFVEVPSQEIAEKAIAELDGADVDGRPIRVNISEARSSRREYDGE 130
Query: 79 ---------------RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFA 122
RK+Y NL W ++++L G V D +I + G++R F
Sbjct: 131 RGERAPRERNYDFDARKVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGRSRGFG 190
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
FVTM+S E+A+ VN + Q+V GR++RV A
Sbjct: 191 FVTMSSAEQAEKVVNGLNGQDVDGRVLRVNIA 222
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|323303187|gb|EGA56986.1| Pub1p [Saccharomyces cerevisiae FostersB]
Length = 433
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 76 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 135
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 136 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 186
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 187 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 243
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 70 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 128
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 129 ANIALQTLNGKQIENNIVKINW 150
>gi|349580919|dbj|GAA26078.1| K7_Pub1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 453
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 127
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 128 ANIALQTLNGKQIENNIVKINW 149
>gi|323335711|gb|EGA76992.1| Pub1p [Saccharomyces cerevisiae Vin13]
Length = 453
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 127
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 128 ANIALQTLNGKQIENNIVKINW 149
>gi|6324312|ref|NP_014382.1| Pub1p [Saccharomyces cerevisiae S288c]
gi|308153665|sp|P32588.4|PUB1_YEAST RecName: Full=Nuclear and cytoplasmic polyadenylated RNA-binding
protein PUB1; AltName: Full=ARS consensus-binding
protein ACBP-60; AltName: Full=Poly uridylate-binding
protein; Short=Poly(U)-binding protein
gi|1301841|emb|CAA95877.1| PUB1 [Saccharomyces cerevisiae]
gi|285814634|tpg|DAA10528.1| TPA: Pub1p [Saccharomyces cerevisiae S288c]
gi|392296972|gb|EIW08073.1| Pub1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 453
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 127
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 128 ANIALQTLNGKQIENNIVKINW 149
>gi|295646|gb|AAC37348.1| RNA-binding protein [Saccharomyces cerevisiae]
gi|311124|gb|AAC37364.1| poly(A)-binding protein [Saccharomyces cerevisiae]
gi|151944515|gb|EDN62793.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|190409011|gb|EDV12276.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
gi|207341619|gb|EDZ69624.1| YNL016Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274171|gb|EEU09080.1| Pub1p [Saccharomyces cerevisiae JAY291]
gi|259148933|emb|CAY82177.1| Pub1p [Saccharomyces cerevisiae EC1118]
gi|323346726|gb|EGA81007.1| Pub1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352444|gb|EGA84945.1| Pub1p [Saccharomyces cerevisiae VL3]
Length = 453
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 127
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 128 ANIALQTLNGKQIENNIVKINW 149
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G++R F FV EEAQ AV +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q +R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E + S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEGSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R+A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V + GRS +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G+++ + + + ++ +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ +++ + P ++S +++ NL + + L + FS
Sbjct: 73 NFEMLKGQPIRIMWSQ--RDPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S G+GFV F T E A+ AI++++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGFGFVHFETYEAAQQAINTMNGMLLNDR 166
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS + +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|365763380|gb|EHN04909.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 453
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 127
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 128 ANIALQTLNGKQIENNIVKINW 149
>gi|172438|gb|AAA02808.1| RNA-binding protein [Saccharomyces cerevisiae]
Length = 429
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 127
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 128 ANIALQTLNGKQIENNIVKINW 149
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK + +
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E + E + +D+
Sbjct: 275 ELKRRFEQMKQDR 287
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP ++ LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>gi|401838326|gb|EJT42016.1| PUB1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 459
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 50 RNLCLQVCST-LQDTTVETKPEQTQKQNI-------RRKLYVFNLPWSFSVAEIKNLFAP 101
+N+ +V ST ++D E+ P I R LYV NL + + +K F
Sbjct: 38 QNVSGEVNSTQVEDDQGESDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQV 97
Query: 102 CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR 161
G + +++I+ K KN N+AFV +A A+ + +++ I+++ +A F+
Sbjct: 98 GGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA--FQS-- 153
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
Q+S+S + L+V +L+ V LR F + +S V+++ G S GYGFV
Sbjct: 154 -QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 208
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
SF ++++A+ A+ ++ G++L GRPLR+ + K D
Sbjct: 209 SFTSQDDAQTAMDTMQGQDLNGRPLRINWAAKRD 242
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ---RSASAPARETQHK-LYVSNLSWKV 186
EA A V+ Q VSG + + + P +A RET + LYV NL +
Sbjct: 27 EASAPVDPSAEQNVSGEVNSTQVEDDQGESDPSVVPANAITGGRETSDRVLYVGNLDKAI 86
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L+++F + K++ + N ++ Y FV + +A A+ +L+GK++ +
Sbjct: 87 TEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 145
Query: 247 RLKF 250
++ +
Sbjct: 146 KINW 149
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+ + +LF GTV E+I ++ ++R F FVTM++ EE + AV
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
F E++GR++ V A + + + ++YV NL W+V L + FS +
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIFSEH 237
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
++VV++ GRS G+GFV+ +++ + AI++LD
Sbjct: 238 GKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALD 276
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NLPW A ++ +F+ G V D ++ + G++R F FVTM+S + A+
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 274
Query: 139 FDTQ 142
D +
Sbjct: 275 LDVR 278
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+ K++V NL + + S +L F ++V++ RS G+GFV+ +T EE + A+
Sbjct: 116 EDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAV 175
Query: 234 SSLDGKELMGRPL 246
G EL GR L
Sbjct: 176 EMFSGYELNGRVL 188
>gi|365758602|gb|EHN00436.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 455
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 50 RNLCLQVCST-LQDTTVETKPEQTQKQNI-------RRKLYVFNLPWSFSVAEIKNLFAP 101
+N+ +V ST ++D E+ P I R LYV NL + + +K F
Sbjct: 38 QNVSGEVNSTQVEDDQGESDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQV 97
Query: 102 CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR 161
G + +++I+ K KN N+AFV +A A+ + +++ I+++ +A F+
Sbjct: 98 GGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA--FQS-- 153
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
Q+S+S + L+V +L+ V LR F + +S V+++ G S GYGFV
Sbjct: 154 -QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 208
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
SF ++++A+ A+ ++ G++L GRPLR+ + K D
Sbjct: 209 SFTSQDDAQTAMDTMQGQDLNGRPLRINWAAKRD 242
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ---RSASAPARETQHK-LYV 179
V S EA A V+ Q VSG + + + P +A RET + LYV
Sbjct: 20 VEAPSVAEASAPVDPSAEQNVSGEVNSTQVEDDQGESDPSVVPANAITGGRETSDRVLYV 79
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NL + L+++F + K++ + N ++ Y FV + +A A+ +L+GK
Sbjct: 80 GNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGK 138
Query: 240 ELMGRPLRLKF 250
++ +++ +
Sbjct: 139 QIENNIVKINW 149
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + +++LF+ G + V++++ G++R F FV EEAQ AV+ +
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+EVSG+++ V A+K R +R + R Q K LYV NL +
Sbjct: 253 GKEVSGQLLYVGRAQK----RAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS S+KV+ ES+ S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G+++ +++ ++ G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR +YV NL V L++ FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N S KV+ +SN G+S G+GFV+F EEA+ A+ ++GKE+ G+ L + QK
Sbjct: 216 NMQSVKVMRDSN-GQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + + +F+P G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++ + P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSHR--DPGLRKSGMG-------NIFIKNLENSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +SSKVV+ NE S G+GFV F T E A+ AI++++G L R
Sbjct: 124 SILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS N +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + ++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSG 97
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + +++LF+ G + V++++ G++R F FV EEAQ AV+ +
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+EVSG+++ V A+K R +R + R Q K LYV NL +
Sbjct: 253 GKEVSGQLLYVGRAQK----RAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS S+KV+ ES+ S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G+++ +++ ++ G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR +YV NL V L++ FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N S KV+ +SN G+S G+GFV+F EEA+ A+ ++GKE+ G+ L + QK
Sbjct: 216 NMQSVKVMRDSN-GQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + + +F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++ + P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSHR--DPGLRKSGMG-------NIFIKNLENSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +SSKVV+ NE S G+GFV F T E A+ AI++++G L R
Sbjct: 124 SILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS N +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + ++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSG 97
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + +++LF+ G + V++++ G++R F FV EEAQ AV+ +
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+EVSG+++ V A+K R +R + R Q K LYV NL +
Sbjct: 253 GKEVSGQLLYVGRAQK----RAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS S+KV+ ES+ S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G+++ +++ ++ G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR +YV NL V L++ FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N S KV+ +SN G+S G+GFV+F EEA+ A+ ++GKE+ G+ L + QK
Sbjct: 216 NMQSVKVMRDSN-GQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + + +F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++ + P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSHR--DPGLRKSGMG-------NIFIKNLENSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +SSKVV+ NE S G+GFV F T E A+ AI++++G L R
Sbjct: 124 SILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS N +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + ++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSG 97
>gi|412986331|emb|CCO14757.1| predicted protein [Bathycoccus prasinos]
Length = 290
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGT----VVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
+ YV NL W + + L C T V+ E+ + GG+++ +A + AS E A A
Sbjct: 114 RCYVGNLAWE---TDEQALIEHCQTIGHPVLRCEVARQSGGRSKGWALIDFASKEAADAG 170
Query: 136 VNQFDTQEVSGR--IIRVE---FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
V E R I+R E A K PR R P + ++ V NL W S
Sbjct: 171 VKALHDTECRARSIIVRAERPGGAAATKPPREIR----PENSSGLQIVVRNLPWSTTSDD 226
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
LR+ F V +K + GRS G+G V F T+E+A+AAI+ +G EL GRP+++K
Sbjct: 227 LRQVFQQVGTVVDAKSTCHDDTGRSKGWGTVLFETQEQAQAAIAGFNGVELEGRPMQIKI 286
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+LYV N+PWS +V E++ LF ++EI + ++R +A V+ + AQ+A+
Sbjct: 10 RLYVGNIPWSTTVEELQGLFT---DAENIEIPTGRQNRSRGYALVSFSDESAAQSAMQAM 66
Query: 140 DTQEVSGRIIRVEFAKKF-KKPRP----------QRSASAPARETQHKLYVSNLSWKVRS 188
+ + R I V K P+ QR + P E + YV NL+W+
Sbjct: 67 NGHALGDRNISVRADNPLPKAPKSSSRGSGGAPVQRPTNLPEAEEGCRCYVGNLAWETDE 126
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L E +PV V + GRS G+ + FA+KE A+A + +L E R + +
Sbjct: 127 QALIEHCQTIGHPVLRCEVARQSGGRSKGWALIDFASKEAADAGVKALHDTECRARSIIV 186
Query: 249 K 249
+
Sbjct: 187 R 187
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++LYV N+ W L+ F+ N + + RS GY VSF+ + A++A+
Sbjct: 9 NRLYVGNIPWSTTVEELQGLFTDAEN----IEIPTGRQNRSRGYALVSFSDESAAQSAMQ 64
Query: 235 SLDGKELMGRPLRLK 249
+++G L R + ++
Sbjct: 65 AMNGHALGDRNISVR 79
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFA--KKFKKPRPQRSASAPARETQHKLYVSNLS 183
M++ EEA A+ + +++GR++ V A + + RP R APA + YV NL
Sbjct: 1 MSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERPPRQF-APA----FRAYVGNLP 55
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W+V + L + FS + V++ VV++ GRS G+GFVS A+KEE + AIS+LDG+EL G
Sbjct: 56 WQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDG 115
Query: 244 RPLRL 248
RPLR+
Sbjct: 116 RPLRV 120
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ YV NLPW + + LF+ G VV+ ++ + G++R F FV+MAS EE A++
Sbjct: 48 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 107
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRS 165
D QE+ GR +RV A + RPQR
Sbjct: 108 LDGQELDGRPLRVNVAAE----RPQRG 130
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F+ GT+ ++ GK+R F FV SP++A AV + +
Sbjct: 104 VFVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELN 163
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + LRE
Sbjct: 164 GKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRE 223
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS NF ++S + G S G GFVSF+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 224 LFS-NFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQR 282
Query: 254 NDD 256
+D
Sbjct: 283 KED 285
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV E AQ+A+ +
Sbjct: 13 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLN 72
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q ++ + + ++V NLS L + FS +
Sbjct: 73 GMLINDKPVYVGPFLRK------QERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSG-Y 125
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +G+S + FV+F + ++A A+ L+GK++
Sbjct: 126 GTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKI 167
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ Q QN LY+ NL + +++ LF+ G + +I++ + G ++ FV+ ++
Sbjct: 200 DKYQGQN----LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTR 255
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+ + + + +SG+ + V FA++
Sbjct: 256 EEASQALTEMNGKMISGKPLYVAFAQR 282
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
+ P +RS SA +++ NL + + L + FSA +S KV + + G+S G
Sbjct: 1 RDPSSRRSGSA-------NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKG 52
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPL 246
+GFV + +E A++A+ SL+G + +P+
Sbjct: 53 FGFVQYEKEESAQSAMKSLNGMLINDKPV 81
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F+ GT+ ++ GK+R F FV SP++A AV + +
Sbjct: 303 VFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELN 362
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + LRE
Sbjct: 363 GKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRE 422
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS NF ++S + G S G GFVSF+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 423 LFS-NFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQR 481
Query: 254 NDD 256
++
Sbjct: 482 KEE 484
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ LF+ G VV V + + + +A+V ++P +A A+
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IRV ++ + P +RS SA +++ NL + + L + FSA
Sbjct: 184 NFAPLNNKPIRVMYSN--RDPSSRRSGSA-------NIFIKNLDKTIDNKTLHDTFSAFG 234
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+S KV + + G+S G+GFV + +E A++A+ SL+G + +P+
Sbjct: 235 AILSCKVAMD-DIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPV 280
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV E AQ+A+ +
Sbjct: 212 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLN 271
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q ++ + + ++V NLS L + FS +
Sbjct: 272 GMLINDKPVYVGPFLRK------QERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFS-EY 324
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +G+S +GFV+F + ++A A+ L+GK++
Sbjct: 325 GTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKI 366
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS VS +V + N RS GY +V+++ +A A+ +L
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L +P+R+ + ++
Sbjct: 184 NFAPLNNKPIRVMYSNRD 201
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ Q QN LY+ NL + +++ LF+ G + +I++ + G ++ FV+ ++
Sbjct: 399 DKYQGQN----LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTR 454
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+ + + + +SG+ + V FA++
Sbjct: 455 EEASQALTEMNGKMISGKPLYVAFAQR 481
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 7/182 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + I++ F+ G V V I+K GK+R F FV SP+EA+ AV +
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 141 TQEVSGRIIRVEFAKK------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ + + V A+K K + +E LYV NL V L+E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEH 328
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
FS+ S+KV+ + G S G+GFV F+T EEA+ A+++L+G L GR L + Q+
Sbjct: 329 FSSCGQITSAKVM-RHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 255 DD 256
+D
Sbjct: 388 ED 389
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 20/259 (7%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS + P + ++L S S SL Y NF + + + L T + KP + +
Sbjct: 49 FSGMGPLVS--VRLCRDSLSGKSLCYAYVNFFYPSDASKALACLNHTKLMGKPMRIMWSH 106
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ + RK L+V NL S + A ++++F G ++ ++ + + GK++ F FV S
Sbjct: 107 RDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAE-ENGKSKCFGFVQFDS 165
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
+ A AA+N + + G+ + F KF K ++ AS + T +YV NL +
Sbjct: 166 DDSATAALNALNDTMLDGKKL---FVSKFVKKCERKEASEETKFTN--VYVKNLGEDLTE 220
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+R+ FS F V + V+ + G+S G+GFV+F + +EA+ A+ +L+G L + L +
Sbjct: 221 DIIRDKFS-EFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Query: 249 KFGQKNDDVSESNKEEEDV 267
QK + E K E+++
Sbjct: 280 GRAQKKAERQELLKHEKEM 298
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V L + FS VS ++ +S G+S Y +V+F +A A++ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 237 DGKELMGRPLRLKFGQKN 254
+ +LMG+P+R+ + ++
Sbjct: 91 NHTKLMGKPMRIMWSHRD 108
>gi|295789540|pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 9/175 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 60
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A + Q+S+S + L+V +L+ V LR F
Sbjct: 61 LNGKQIENNIVKINWA-----FQSQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 111
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K
Sbjct: 112 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
+D
Sbjct: 371 KED 373
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + ++ ++A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P +RS ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRRSGVG-------NIFVKNLDKSINNKVLYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSG 97
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 11/193 (5%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E+T+ N+ YV NL + I++ F+ G V V I+K GK+R F FV SP
Sbjct: 202 EETKFTNV----YVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESP 257
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK------FKKPRPQRSASAPARETQHKLYVSNLS 183
+EA+ AV + + + + V A+K K + +E LYV NL
Sbjct: 258 DEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLD 317
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
V L+E FS+ S+KV+ + G S G+GFV F+T EEA+ A+++L+G L G
Sbjct: 318 ASVDDDKLQEHFSSCGQITSAKVM-RHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHG 376
Query: 244 RPLRLKFGQKNDD 256
R L + Q+ +D
Sbjct: 377 RSLYIAMAQRKED 389
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 124/248 (50%), Gaps = 18/248 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK---- 80
++L S S SL Y NF + + + L T + KP + + + + RK
Sbjct: 58 VRLCRDSLSGKSLCYAYVNFFHPSDASKALACLNHTKLMGKPMRIMWSHRDPLPRKTGLA 117
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL S + A ++++F G ++ ++ + + GK++ F FV S + A AA+N
Sbjct: 118 NLFVKNLDPSINSASLQDIFCKFGNILSCKVAE-ENGKSKCFGFVQFDSDDSATAALNAL 176
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ + F KF K ++ AS + T +YV NL + +R+ FS F
Sbjct: 177 NDTMLDGKKL---FVSKFVKKCERKEASEETKFTN--VYVKNLGEDLTEDIIRDKFS-EF 230
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
V + V+ + G+S G+GFV+F + +EA+ A+ +L+G L + L + QK + E
Sbjct: 231 GKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQE 290
Query: 260 SNKEEEDV 267
K E+++
Sbjct: 291 LLKHEKEM 298
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V L + FS VS ++ +S G+S Y +V+F +A A++ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 237 DGKELMGRPLRLKFGQKN 254
+ +LMG+P+R+ + ++
Sbjct: 91 NHTKLMGKPMRIMWSHRD 108
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK+R F FV+ E+A AV++ +
Sbjct: 94 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMN 153
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 154 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 209
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F ++EEA A++ ++G+ + +PL +
Sbjct: 210 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVA 267
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 268 LAQRKEE 274
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 2 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 60
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS
Sbjct: 61 GLLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG 116
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 117 KTLSVKVMRDSS-GKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQK 169
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 7/182 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + I++ F+ G V V I+K GK+R F FV SP+EA+ AV +
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 141 TQEVSGRIIRVEFAKK------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ + + V A+K K + +E LYV NL V L+E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEH 328
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
FS+ S+KV+ + G S G+GFV F+T EEA+ A+++L+G L GR L + Q+
Sbjct: 329 FSSCGQITSAKVM-RHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 255 DD 256
+D
Sbjct: 388 ED 389
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 20/259 (7%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS + P + ++L S S SL Y NF + + + L T + KP + +
Sbjct: 49 FSGMGPLV--SVRLCRDSLSGKSLCYAYVNFFHPSDASKALACLNHTKLMGKPMRIMWSH 106
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ + RK L+V NL S + A ++++F G ++ ++ + + GK++ F FV S
Sbjct: 107 RDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAE-ENGKSKCFGFVQFDS 165
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
+ A AA+N + + G+ + F KF K ++ AS + T +YV NL +
Sbjct: 166 DDSATAALNALNDTMLDGKKL---FVSKFVKKCERKEASEETKFTN--VYVKNLGEDLTE 220
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+R+ FS F V + V+ + G+S G+GFV+F + +EA+ A+ +L+G L + L +
Sbjct: 221 DIIRDKFS-EFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Query: 249 KFGQKNDDVSESNKEEEDV 267
QK + E K E+++
Sbjct: 280 GRAQKKAERQELLKHEKEM 298
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V L + FS VS ++ +S G+S Y +V+F +A A++ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 237 DGKELMGRPLRLKFGQKN 254
+ +LMG+P+R+ + ++
Sbjct: 91 NHTKLMGKPMRIMWSHRD 108
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N F+ ++K +F+ G + V ++K + G++R F FV A E+AQ AVN+ +
Sbjct: 193 VYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+I+ V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ S+KV+ + ++ S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFAPYGTITSAKVMTDGSQ--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 REE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ N+ + + L + FSA
Sbjct: 73 NYDVIKGRPIRIMWSQR--DPGLRKSGVG-------NIFIKNMDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVV--CDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NYDVIKGRPIRIMWSQRDPGLRKSG 97
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ L +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
M+ E+ A + + +E GR +RV F+ K P+P+ ET+HKL+V NLSW
Sbjct: 1 MSCIEDCNAVIENLNGKEFLGRTLRVNFSSK---PKPKEPLYP---ETEHKLFVGNLSWS 54
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V + L + F V ++V+++ GRS GYGFV ++T+ E EAA+++L+ EL GR
Sbjct: 55 VTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRA 114
Query: 246 LRLKFGQ 252
+R+ Q
Sbjct: 115 MRVSLAQ 121
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTM 126
KP++ KL+V NL WS + + F GTVV ++ + G++R + FV
Sbjct: 33 KPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCY 92
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
++ E +AAV + E+ GR +RV A+
Sbjct: 93 STQAEMEAAVAALNDVELEGRAMRVSLAQ 121
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+SG+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQH--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q + + +S
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSG 97
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K++F+ G + + ++ + GK+R F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G++I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ + GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N +S +V+ + N G+S G+GFVSF E+A+ A+ ++GKE+ G+ + + QK
Sbjct: 216 NAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQK 268
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N +++ +++ LF+ GT+ ++K GK+R F FV SP+ A AAV + +
Sbjct: 186 VYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLN 245
Query: 141 TQEVS-GRIIRVEFAKKFKKPRPQRSASAPAR---------ETQH--KLYVSNLSWKVRS 188
V+ +++ V A++ + +R A AR E H LYV NL + +
Sbjct: 246 GTTVNDDKVLYVGRAQR----KAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNIND 301
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E FS S KV+ E N GRS GYGFV+F+ A A+ ++GK + RPL +
Sbjct: 302 DKLKELFSEFGTITSCKVMLEPN-GRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYV 360
Query: 249 KFGQKNDD 256
Q+ ++
Sbjct: 361 AVAQRKEE 368
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L + A++ LFA G + + + + + ++ +A+V +P++A A+ +
Sbjct: 8 LYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLN 67
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++G+ IRV F+ + P ++S A +++ NL + + L + F+A
Sbjct: 68 FTPLNGKSIRVMFSN--RDPSIRKSGYA-------NVFIKNLDISIDNKTLHDTFAAFGF 118
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+SSKV +S G+S GYGFV F +E A+ AI L+G
Sbjct: 119 VLSSKVAVDS-IGQSKGYGFVQFDNEESAQNAIKELNG 155
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL ++ + ++K LF+ GT+ +++ G+++ + FV ++P A A+++ +
Sbjct: 290 LYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMN 349
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLY-VSNLSWKVRSTH 190
+ + R + V A++ + +R A A+ +Q H LY +++L + H
Sbjct: 350 GKMIGRRPLYVAVAQR----KEERKALLEAQFSQMHALYAITHLPTGIPVYH 397
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + F A P+ S V RS GY +V+F ++A A+ L
Sbjct: 8 LYVGDLERNVDEAQLFQLF-ARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHL 66
Query: 237 DGKELMGRPLRLKFGQKNDDVSES 260
+ L G+ +R+ F ++ + +S
Sbjct: 67 NFTPLNGKSIRVMFSNRDPSIRKS 90
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S G+GFV F T E A+ AIS+++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + A + F+P G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S G+GFV F T E A+ AIS+++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ +GGK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G + V++++ G++R F FV EEAQ AV+ +
Sbjct: 256 VYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 315
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+EV G+++ V A+K R +R + R Q K LYV NL +
Sbjct: 316 GKEVRGQLLYVGRAQK----RAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDE 371
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FSA S+KV+ ES+ S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 372 RLKEVFSAYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 429
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 430 LAQRKEE 436
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G+++ +++ ++ G +R F FV + E AQ A+N +
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 222
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR +YV NL + L++ FS F
Sbjct: 223 GMLLNDRKV---FVGHFKS-RQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFS-QF 277
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V + G+S G+GFV+F EEA+ A+ ++GKE+ G+ L + QK + S
Sbjct: 278 GKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQS 337
Query: 259 ESNKEEEDVSEDQ 271
E + E V +++
Sbjct: 338 ELKRRFEQVKQER 350
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + +F+P GT++ + + + + + +A++ P +A+ A++
Sbjct: 76 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++ + P ++S +++ NL + + L + FS
Sbjct: 136 NFEMIKGQPIRIMWSHR--DPGLRKSGMG-------NIFIKNLENSIDNKALYDTFSTFG 186
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +SSKVV+ NE S G+GFV F T E A+ AI++++G L R
Sbjct: 187 SILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 229
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 76 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + ++ + +S
Sbjct: 136 NFEMIKGQPIRIMWSHRDPGLRKSG 160
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL ++ LF+ G ++ V++++ G +R F FV + EEAQ AV +
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ + F FK R +R AR + +YV NL V L+E FS F
Sbjct: 160 GMLLNDHKV---FVGHFKS-RREREVELGARAMEFTNIYVKNLQADVDEQGLQELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V + G S G+GFV+F T EEA+ A+ ++GKE+ GR L + QK
Sbjct: 215 GKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQK 268
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEMIKGQPIRIMWSQRDPGLRKSG 97
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+SG+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQH--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q + + +S
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSG 97
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R++Y+ N+P + S ++ L G V V+++ K G++R F F TM S E+A A V
Sbjct: 76 RRVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQ----RSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ + V GR I+V +K P +S + ++ +K+YV NL+ V L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
FS VS+KV +S G+GFV+F+++E+ EAA+ +L+ L G+ +R+
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAVVALNNSLLEGQKIRV 250
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P+ E ++Y+ N+ V + L + + +V+++ GRS +GF + + E+
Sbjct: 70 PSSEAARRVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 229 AEAAISSLDGKELMGRPLRLKFGQK 253
A A + L+G + GR +++ +K
Sbjct: 130 ANAVVEKLNGNTVEGREIKVNITEK 154
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + VE++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V+++K G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR + RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E AQ A++ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL + L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELRARAMEFTNIYVKNLQVDMDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+ S V + N G S G+GFV+F EEA+ A+ ++GKE+ GR L + QK + +
Sbjct: 215 GKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F P G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S G+GFV F T E A+ AIS+++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGFGFVHFETHEAAQQAISTMNGMLLNDR 166
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 65 VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
++ K EQ ++ + R LYV NL S +++ F+P G + +++ +GG ++
Sbjct: 276 LKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKG 334
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRII 149
F FV +SPEEA AV E++GRII
Sbjct: 335 FGFVCFSSPEEATKAVT-----EMNGRII 358
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E F +S +V + RS Y +++F +AE A+ ++
Sbjct: 13 LYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 99/183 (54%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + + ++K F+ G + V +++ + G++R F FV A E+AQ AV++ +
Sbjct: 193 IYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+II V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E+ G+S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGTITSAKVMTEA--GQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 REE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G +V + + + ++ +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ N+ + + L + FSA
Sbjct: 73 NYDVIKGRPIRIMWSQR--DPALRKSGVG-------NIFIKNIDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVV--CDERGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS VS +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NYDVIKGRPIRIMWSQRDPALRKSG 97
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F+ GT+ ++ GK+R F FV SP++A AV + +
Sbjct: 303 VFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELN 362
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + LRE
Sbjct: 363 GKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRE 422
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS NF ++S + G S G GFVSF+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 423 LFS-NFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQR 481
Query: 254 NDD 256
++
Sbjct: 482 KEE 484
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ LF+ G VV V + + + +A+V ++P +A A+
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IRV ++ + P +RS SA +++ NL + + L + FSA
Sbjct: 184 NFAPLNNKPIRVMYSN--RDPSSRRSGSA-------NIFIKNLDKTIDNKTLHDTFSAFG 234
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+S KV + + G+S G+GFV + +E A++A+ SL+G + +P+
Sbjct: 235 AILSCKVAMD-DIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPV 280
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV E AQ+A+ +
Sbjct: 212 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLN 271
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q ++ + + ++V NLS L + FS +
Sbjct: 272 GMLINDKPVYVGPFLRK------QERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFS-EY 324
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +G+S +GFV+F + ++A A+ L+GK++
Sbjct: 325 GTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKI 366
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS VS +V + N RS GY +V+++ +A A+ +L
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L +P+R+ + ++
Sbjct: 184 NFAPLNNKPIRVMYSNRD 201
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ Q QN LY+ NL + +++ LF+ G + +I++ + G ++ FV+ ++
Sbjct: 399 DKYQGQN----LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTR 454
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+ + + + +SG+ + V FA++
Sbjct: 455 EEASQALTEMNGKMISGKPLYVAFAQR 481
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 68 KPEQTQKQNIR----RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAF 123
K ++T K+N + R L++ NLP+ + +I+ +F ++V I+ +K G +R A+
Sbjct: 354 KSKETMKENKKERDARTLFLKNLPYRITEDDIREVFE---NALEVRIVMNKDGNSRGMAY 410
Query: 124 VTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
V + EA A+ + E+ GR + ++F + + Q+ S L V+NLS
Sbjct: 411 VEFKTEAEADKALEEKQGTEIEGRAVVIDFTGEKSQQENQKGEST-------TLIVNNLS 463
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ L+E F SS V ++N+GR GY FV FAT E+A+ A++SL+ E+ G
Sbjct: 464 YAATEETLQEVFKK----ASSIRVPQNNQGRPKGYAFVDFATAEDAKEALNSLNNTEIEG 519
Query: 244 RPLRLKF 250
R +RL+F
Sbjct: 520 RTIRLEF 526
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 128/270 (47%), Gaps = 24/270 (8%)
Query: 5 EAAATSIFLTNHPFSFSC-----LFPKLPHCIKLLHSSNSTPSLSY-NFPTRNLCLQVCS 58
E A ++FL N P+ + +F +++ ++ ++Y F T +
Sbjct: 365 ERDARTLFLKNLPYRITEDDIREVFENALEVRIVMNKDGNSRGMAYVEFKTEAEADKALE 424
Query: 59 TLQDTTVETKP-------EQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDV 108
Q T +E + E++Q++N + + L V NL ++ + ++ +F ++
Sbjct: 425 EKQGTEIEGRAVVIDFTGEKSQQENQKGESTTLIVNNLSYAATEETLQEVFKKASSI--- 481
Query: 109 EIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF--KKPRPQRSA 166
+ ++ G+ + +AFV A+ E+A+ A+N + E+ GR IR+EF+ K R
Sbjct: 482 RVPQNNQGRPKGYAFVDFATAEDAKEALNSLNNTEIEGRTIRLEFSSPSWQKGNTNARGG 541
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
+ L+V LS LRE F + +S+++V + + G S G+GFV F++
Sbjct: 542 GGGFGQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSP 598
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
E+A+AA +++ E+ G + L F + D
Sbjct: 599 EDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 628
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KVV + N S GYGFV F T+E AE AI ++G L R +
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 63
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+SG+II +VE + K+ Q +R LY+ NL + LR+
Sbjct: 64 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 123
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 124 EFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 181
Query: 254 NDD 256
++
Sbjct: 182 KEE 184
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R++Y+ N+P + + ++ L G V V+++ K G++R F F TM S E+A A V
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQ----RSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ + V GR I+V +K P +S + ++ +K+YV NL+ V L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
FS VS+KV +S G+GFV+F+++E+ EAAI +L+ L G+ +R+
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+A P+ E ++Y+ N+ V + L + + +V+++ GRS +GF +
Sbjct: 66 AALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ E+A A + L+G + GR +++ +K
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKVNITEK 154
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K +F+ G V ++ + G R F FV+ + E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMN 252
Query: 141 TQEVSGRII-----------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++GRI+ ++E ++F++ + R+ R LYV NL +
Sbjct: 253 GKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRT----TRYQGVNLYVKNLDDGIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R + FV + + A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFG 215
Query: 200 NPVSSKVVF-ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N S +V+ ES GR G+GFVSF E+A+ A+ ++GKEL GR + + QK
Sbjct: 216 NATSVRVMTDESGGGR--GFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQK 268
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G +V + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGQPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N R GYGFV F T + AE AI ++G L R
Sbjct: 124 NILSCKVVCDENGSR--GYGFVHFETHDAAERAIEKMNGMLLNDR 166
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS VS +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSG 97
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++YV NL W+ E+K+ GTVV ++++ G+++ V A+ EEA A+ +
Sbjct: 179 RVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEPNGRSKGCGLVEYATQEEAAKAIAEL 238
Query: 140 DTQEVSGRIIRVEFAKKFKKPR-------PQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+ E+ GR+I F ++ ++P +R+A+ +LYV NL W+ L+
Sbjct: 239 NNTELEGRLI---FVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLK 295
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ F V + E +GRS G+G + + +A AI L+G E+ GR + ++ +
Sbjct: 296 DLFR-TVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDK 354
Query: 253 K 253
+
Sbjct: 355 R 355
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++YV NL WS ++K+ G V++ + G+++ VT + E AQ A+
Sbjct: 90 RVYVGNLSWSIKWQDLKDHMQAAGP-VELATVLESNGRSKGCGIVTYETEEAAQNAIATL 148
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ E+ GR I F ++ ++ +P SA P R ++YV NLSW V+ L++
Sbjct: 149 NDTELGGRKI---FVREDREAQPV-SAVKPKR--GFRVYVGNLSWNVKWQELKDHMKKAG 202
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
V + V+ E N GRS G G V +AT+EEA AI+ L+ EL GR
Sbjct: 203 TVVHADVLEEPN-GRSKGCGLVEYATQEEAAKAIAELNNTELEGR 246
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R+LYV NLPW + ++K+LF G V +I ++ G++R F + + +A A+ +
Sbjct: 278 RQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIER 337
Query: 139 FDTQEVSGRIIRVEFAKK 156
+ E+ GR+I V K+
Sbjct: 338 LNGLEIEGRLIEVRLDKR 355
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++YV NLSW ++ L++ A PV V ESN GRS G G V++ T+E A+ AI++
Sbjct: 90 RVYVGNLSWSIKWQDLKDHMQA-AGPVELATVLESN-GRSKGCGIVTYETEEAAQNAIAT 147
Query: 236 LDGKELMGRPL 246
L+ EL GR +
Sbjct: 148 LNDTELGGRKI 158
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K LF+ G + + ++ GGK++ F FV+ E+AQ AV+ +
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR + V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPLRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRPLR+ + Q++ + +S
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSG 97
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ S E+K LF P GTV + K GK+R FAFV E A ++ +
Sbjct: 243 VYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLN 302
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
Q+ G+ + V A+K ++ + Q A+ + T+ + L+V NL + L+E
Sbjct: 303 DQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKE 362
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F + F +SS V G+S G+GFVSF++ EEA AIS ++ L G+PL + Q+
Sbjct: 363 EFQS-FGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQR 421
Query: 254 ND 255
D
Sbjct: 422 KD 423
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K +A+V + ++ + A+++
Sbjct: 62 LYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDEL 121
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ ++++ R R + +++ NL + + L + FSA F
Sbjct: 122 NYSVVKGQPIRIMWSQRDPAKR---------RNGEGNVFIKNLHPAIDNKALHDTFSA-F 171
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ S V N G+S G+GFV F + E A+AAI +++G
Sbjct: 172 GRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNG 210
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 24/202 (11%)
Query: 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEA 132
+++N +++ NL + + + F+ G ++ ++ G+++ F FV SPE A
Sbjct: 142 KRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAA 201
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL----------YVSNL 182
QAA+ + V+G ++ + + P R R+ Q KL YV N+
Sbjct: 202 QAAI-----ENVNGMLLNNN--EVYVGPHVAR------RDRQSKLEEVIKSFTNVYVKNI 248
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ ++E F+ F V+S + + EG+S G+ FV++ E A +I SL+ ++
Sbjct: 249 DLEASEEEVKELFTP-FGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYK 307
Query: 243 GRPLRLKFGQKNDDVSESNKEE 264
G+ L + QK + E K++
Sbjct: 308 GKKLYVGRAQKKSERLEELKKQ 329
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S ++K F GT+ V+++ + GK++ F FV+ +SPEEA A+++ +
Sbjct: 346 LFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMN 405
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
++G+ + V A++ R Q AR
Sbjct: 406 QHMLAGKPLYVALAQRKDVRRSQLEQQIQAR 436
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++++S+ ET LYV L + L E FS S +V ++ RS GY +V+
Sbjct: 48 EQASSSSVSETTASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVN 107
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ ++ E AI L+ + G+P+R+ + Q++
Sbjct: 108 YHNVKDGEKAIDELNYSVVKGQPIRIMWSQRD 139
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G V++++ G++R F F+ EEAQ AV+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+EVSG+++ V A+K R +R R Q K LYV NL +
Sbjct: 253 GKEVSGQLLYVGRAQK----RAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS S+KV+ ES+ S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G+++ +++ ++ G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR +YV NL + L++ FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S KV+ +SN G+S G+GF++F EEA+ A+ ++GKE+ G+ L + QK
Sbjct: 216 KTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + +F+P GT++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++ + P +RS +++ NL + + L + FS
Sbjct: 73 NFEMIKGQPIRIMWSHR--DPGLRRSGMG-------NIFIKNLENSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +SSKVV+ NE S G+GFV F T E A+ AI++++G L R
Sbjct: 124 SILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + ++ + S
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSG 97
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ +++ I R LY+ NL + +++ F+P G++ +++ G +++ F FV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG-RSKGFGFVC 339
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+SPEEA AV + + + V + + V A++
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|384499302|gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTMASPEEAQAAVNQF 139
++V L + + EI+ F CG V DV + H G K+R FA + S E QAA+
Sbjct: 83 VFVGQLNFDATAEEIRTHFGQCGPVSDVRLRMHPNGVKSRGFAHIDFTSAEGKQAAM-AL 141
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
D E GR IRV+ A+ P RS K++V+NLS+ L++ F F
Sbjct: 142 DGTEFMGRTIRVDDAQ----PAQGRSTDTNYGPKTDKVFVANLSYDTDEDSLKQAFE-KF 196
Query: 200 NPVSSKVVF--ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ ++ + GR G ++ F T++EAEAA+ ++G L GRP+R F ND
Sbjct: 197 GTIVGEIGLPISRDTGRIRGIAYIQFETEDEAEAAVKGMNGVYLDGRPIRTDFSGDND 254
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ +++ I R LY+ NL + +++ F+P G++ +++ G +++ F FV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG-RSKGFGFVC 339
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+SPEEA AV + + + V + + V A++
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ ++ +FA G + E++ +G K++ F FV A+PEEA+ AV
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEG-KSKGFGFVAFANPEEAETAVQALH 273
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ G +++ + KK +R A + QHK LYV NL V
Sbjct: 274 DSTIEGTDLKLHVCRAQKKS--ERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 331
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F + N S+KV+ + N GRS G+GFV F EEA +A++ ++ K + +PL +
Sbjct: 332 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 390
Query: 250 FGQKNDD 256
GQ+ +D
Sbjct: 391 IGQRKED 397
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 98/188 (52%), Gaps = 15/188 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + + F+ G V+ + + + + + +A+V P +A+ A++
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ +R+ ++++ P +RS + +++ NL + + + + FS
Sbjct: 94 NFEALHGKPMRIMWSQR--DPAMRRSGAG-------NIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KF---GQKND 255
N +S KV + +G S GYGFV F T+E A+ AI ++G L G+ + + KF Q+N
Sbjct: 145 NILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 256 DVSESNKE 263
++ E+ K+
Sbjct: 204 ELGETAKQ 211
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEA 231
T LYV +L V + L E FSA PV S V N R S GY +V+F +AE
Sbjct: 30 TMASLYVGDLHPDVNESILFEKFSAA-GPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
A+ +++ + L G+P+R+ + Q++
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRD 111
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 51 NLCLQVCSTLQDTT----VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPC 102
+L L VC + + ++ K EQ + + +++ LYV NL + +K F
Sbjct: 281 DLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESY 340
Query: 103 GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP 162
G + +++ + G+++ F FV PEEA +AV + +++ V + + V ++ + R
Sbjct: 341 GNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKEDRRA 400
Query: 163 QRSASAPARETQHKLY 178
Q ++ R +++
Sbjct: 401 QLASQYMQRVASMRMH 416
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ +++ I R LY+ NL + +++ F+P G++ +++ G +++ F FV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG-RSKGFGFVC 339
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+SPEEA AV + + + V + + V A++
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+VSGR++ V A+K R +R R K LYV NL +
Sbjct: 253 GMQVSGRLLYVGRAQK----RGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G +R F FV + E AQ A++ +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR T +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELGARATAFTNIYVKNLPGHVDERGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+ S V + G S G+GFV+F EEA+ A+ ++G ++ GR L + QK +
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGE 271
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NVFIKNLEDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + + R G+GFV F T E A+ AIS+++G L R
Sbjct: 124 NILSCKVVCDDHGSR--GFGFVHFETHEAAQQAISTMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 168 IYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMN 227
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ V A+K K+ Q R LYV NL + LR+
Sbjct: 228 GKEVSGRLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRK 287
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 288 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 345
Query: 254 NDD 256
++
Sbjct: 346 KEE 348
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 99 FAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+P G ++ + + + + +A++ P +A+ A++ + + + G+ IR+ ++++
Sbjct: 6 FSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQR- 64
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
P ++S +++ NL + + L + FS N +S KVV +E S G
Sbjct: 65 -DPGLRKSGVG-------NIFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDEHGSRG 114
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGR 244
+GFV F T + A+ AIS+++G L R
Sbjct: 115 FGFVHFETHDAAQRAISTMNGMLLNDR 141
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G +R F FV + E A A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V + G S G+GFV+F EEA+ A+ ++GKE+ GR L + QK
Sbjct: 215 GKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSG 97
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 168 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 227
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 228 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 283
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 284 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 341
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 342 LAQRKEE 348
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 134
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 135 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 189
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 190 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 243
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 12/147 (8%)
Query: 99 FAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+P G V+ + + + ++ +A+V P +A+ A++ + + G+ IR+ ++++
Sbjct: 6 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQR- 64
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
P ++S +++ NL + + L + FSA N +S KVV + N S G
Sbjct: 65 -DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKG 114
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGR 244
Y FV F T+E A+ AI ++G L R
Sbjct: 115 YAFVHFETQEAADKAIEKMNGMLLNDR 141
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKVLYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G +R F FV + E A A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V + G S G+GFV+F EEA+ A+ ++GKE+ GR L + QK
Sbjct: 215 GKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSG 97
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ +++ E + LFAP G + + + K GK++ F FV E A AV + +
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 141 TQEVSGRIIRVEFAKKFKKP----RPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K ++ + Q A + ++++ L+V NL ++ S L E
Sbjct: 310 DKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEE 369
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V + G+S G+GFV F+T EEA AI+ ++ + + G+PL + Q+
Sbjct: 370 EFKP-FGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQR 428
Query: 254 ND 255
D
Sbjct: 429 KD 430
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+ +
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V GR R+ ++ QR SA R +++ NL + + L + FSA F
Sbjct: 129 NYTPVEGRPCRIMWS--------QRDPSA-RRSGDGNIFIKNLHPAIDNKALHDTFSA-F 178
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G+S +GFV + T+E A+AAI S++G L R
Sbjct: 179 GKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDR 223
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++ S+ E LYV L+ V L E FS S +V ++ +S GY +V+
Sbjct: 55 EQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVN 114
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ E+ E AI L+ + GRP R+ + Q++
Sbjct: 115 YHKLEDGEKAIEELNYTPVEGRPCRIMWSQRD 146
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ ++S + LFAP G + + + K + GK++ F FV + + A AV + +
Sbjct: 234 IYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELN 293
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K ++ + Q A+ + +++ L+V NL + S L E
Sbjct: 294 DKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEE 353
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F + F ++S V + G+S G+GFV F T EEA AI+ ++ + + G+PL + Q+
Sbjct: 354 EFKS-FGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQR 412
Query: 254 ND 255
D
Sbjct: 413 KD 414
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 56 VCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK- 114
+T D + E + E + LYV L S + A + +F+P G V + + +
Sbjct: 28 AATTTADQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAV 87
Query: 115 GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
K+ +A+V E+ + A+ + + + GR R+ ++ QR SA R
Sbjct: 88 SKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWS--------QRDPSA-RRSGD 138
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
+++ NL + + L + FSA F + S V G+S +GFV + T E AEAAI
Sbjct: 139 GNIFIKNLHPAIDNKALHDTFSA-FGKILSCKVAADEFGQSKCFGFVHYETAEAAEAAIE 197
Query: 235 SLDGKELMGR 244
+++G L R
Sbjct: 198 NVNGMLLNDR 207
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++ S+ E LYV L+ V L E FS S +V ++ +S GY +V+
Sbjct: 39 EQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVN 98
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ E+ E AI L+ + GRP R+ + Q++
Sbjct: 99 YHKYEDGEKAIEELNYTPIEGRPCRIMWSQRD 130
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 103/234 (44%), Gaps = 15/234 (6%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRR 79
I++ + S SL Y N+ + L T +E +P + + +++
Sbjct: 80 IRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDG 139
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + + + F+ G ++ ++ + G+++ F FV + E A+AA+
Sbjct: 140 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYETAEAAEAAIENV 199
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ R + F K + + S + +YV N+ + F A +
Sbjct: 200 NGMLLNDREV---FVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLF-APY 255
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++S + + +G+S G+GFV+F + A A+ L+ KE+ G+ + + QK
Sbjct: 256 GKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQK 309
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N ++ L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F+ G + V+++ G++R F FV + EEAQ AV + +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+GR++ V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERI----NRYQGVNLYVKNLDDGIDDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +S KVV +E S GYGFV F T+E A AI +++G L R
Sbjct: 124 DILSCKVV--CDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 168 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 227
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 228 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 287
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 288 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 345
Query: 254 NDD 256
++
Sbjct: 346 KEE 348
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 99 FAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+P G ++ + + + ++ +A+V P +A+ A++ + + G+ +R+ ++++
Sbjct: 6 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR- 64
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
P ++S +++ NL + + L + FSA N +S KVV + N S G
Sbjct: 65 -DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKG 114
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGR 244
YGFV F T+E AE AI ++G L R
Sbjct: 115 YGFVHFETQEAAERAIEKMNGMLLNDR 141
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N ++ L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + + ++A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P +RS ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRRSGVG-------NIFVKNLDKSINNKVLYDTASAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + R + Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSG 97
>gi|398407631|ref|XP_003855281.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
gi|339475165|gb|EGP90257.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
Length = 598
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 6/189 (3%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVT 125
T PE Q++ +R ++V L + ++K F G VV+ +I+K + G+++ +V
Sbjct: 200 TPPELDQEERDKRTVFVQQLAAALRTKQLKAFFEQSGPVVEAQIVKDRVSGRSKGVGYVE 259
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ---HKLYVSNL 182
A E Q A+ + Q++ I V+ + K + + S P + H+LYV N+
Sbjct: 260 FADEESVQKAL-ELTGQKLMNIPIIVQLTEAEKNRQARTSEGQPTQSNGIPFHRLYVGNI 318
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ + + LR+ F F + + + + GRS GYGFV FA +EA+ A+ ++G E+
Sbjct: 319 HFSIEESDLRDVFEP-FGELEFVQLQKEDTGRSKGYGFVQFAKSDEAKIALEKMNGFEVA 377
Query: 243 GRPLRLKFG 251
GRP+R+ G
Sbjct: 378 GRPIRVGLG 386
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N P + Q T E +P Q+ R LYV N+ +S ++++++F P G +
Sbjct: 279 NIPIIVQLTEAEKNRQARTSEGQPTQSNGIPFHR-LYVGNIHFSIEESDLRDVFEPFGEL 337
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151
V++ K G+++ + FV A +EA+ A+ + + EV+GR IRV
Sbjct: 338 EFVQLQKEDTGRSKGYGFVQFAKSDEAKIALEKMNGFEVAGRPIRV 383
>gi|464252|sp|P20397.3|NUCL_XENLA RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|64937|emb|CAA44805.1| nucleolin [Xenopus laevis]
Length = 651
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + +K+ R L+V N+P+S +V E++ +F D+ I K G N+ A+V +
Sbjct: 314 KTAENKKERDSRTLFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFS 370
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +EA A+ + E+ GR I V+F + + Q S + E K L V+NLS+
Sbjct: 371 NEDEANKALEEKQGAEIEGRSIFVDFTGE----KSQNSGNKKGPEGDSKVLVVNNLSYSA 426
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
LRE F ++ + N+GR+ G+ F+ F++ E+A+ A+ S + E+ GR +
Sbjct: 427 TEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSI 481
Query: 247 RLKF 250
RL+F
Sbjct: 482 RLEF 485
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L V NL +S + ++ +F ++ I G+ + FAF+ +S E+A+ A++ +
Sbjct: 417 LVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIEFSSAEDAKDAMDSCN 472
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E+ GR IR+EF++ R SA ++ L+V LS L+E F + N
Sbjct: 473 NTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT----LFVRGLSEDTTEETLKEAFDGSVN 528
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+++V + + G S G+GFV F+T E+A+AA +++ E+ G + L F + D
Sbjct: 529 ---ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +++ LF+ G + + ++ + GK+R F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+++ V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N ++ LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N +S +V+ + N G+S G+GFVSF E+A+ A+ ++GKE+ G+ + + QK
Sbjct: 216 NAMSIRVMTDEN-GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQK 268
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGQPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSG 97
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH---KGGKNRNFAFVTMASPEEAQAAVN 137
LYV +L + A + F+P G ++ + + + +G + N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRG--SSNYAYVNFQHPKDAEHALD 70
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 71 TMNFDVIKGKPLRIMWSQR--DPSLRKSGMG-------NIFVKNLDKSINNKALYDTVSA 121
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 122 FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+PLR+ + Q++ + +S
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSG 97
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +++ LF+ G + + ++ + GK+R F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+++ V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 103/193 (53%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N ++ LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
N +S +V+ + N G+S G+GFVSF E+A+ A+ ++GKE+ G+ + + QK + +
Sbjct: 216 NAMSIRVMTDEN-GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGQPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSG 97
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|301115672|ref|XP_002905565.1| RNA binding protein, putative [Phytophthora infestans T30-4]
gi|262110354|gb|EEY68406.1| RNA binding protein, putative [Phytophthora infestans T30-4]
Length = 322
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E E Q ++ ++YV NL WS ++K+ G V D+ + G+++ VT
Sbjct: 61 EEDVEMEQTSSVGSRVYVGNLSWSIKGQDLKDHMQAAGPV-DLATVLEWNGRSKGCGIVT 119
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
A+ E AQ A+ + E+ GR I F ++ ++ +P + + P R +++YV NLSW
Sbjct: 120 YATEEAAQNAIATLNDTELGGRKI---FVREDREAQPT-ATTKPKR--GYRVYVGNLSWN 173
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
V+ L++ V + V+ +N GRS G G V +AT++EA AI+ L+ EL GR
Sbjct: 174 VKWQELKDHMKTAGTVVHADVLELAN-GRSKGCGLVEYATEDEAAKAIAELNNTELEGR 231
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 22/206 (10%)
Query: 47 FPTRNLCLQVCSTLQDTTV-----------ETKPEQTQKQNIRRKLYVFNLPWSFSVAEI 95
+ T +TL DT + E +P T K ++YV NL W+ E+
Sbjct: 120 YATEEAAQNAIATLNDTELGGRKIFVREDREAQPTATTKPKRGYRVYVGNLSWNVKWQEL 179
Query: 96 KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
K+ GTVV ++++ G+++ V A+ +EA A+ + + E+ GR+I F +
Sbjct: 180 KDHMKTAGTVVHADVLELANGRSKGCGLVEYATEDEAAKAIAELNNTELEGRLI---FVR 236
Query: 156 KFKKPRP------QRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVF 208
+ ++P + ASAP + + LYV NL W L++ F V +
Sbjct: 237 EDREPEGGSISKFAKRASAPRGNGEGRQLYVGNLPWDTNWQQLKDLFR-TVGDVERADIA 295
Query: 209 ESNEGRSAGYGFVSFATKEEAEAAIS 234
E +GRS G+G + + +A AI
Sbjct: 296 EYPDGRSRGFGIIRYTNAVDALQAIG 321
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++YV NLSW ++ L++ A PV V E N GRS G G V++AT+E A+ AI++
Sbjct: 75 RVYVGNLSWSIKGQDLKDHMQA-AGPVDLATVLEWN-GRSKGCGIVTYATEEAAQNAIAT 132
Query: 236 LDGKELMGRPL 246
L+ EL GR +
Sbjct: 133 LNDTELGGRKI 143
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R+LYV NLPW + ++K+LF G V +I ++ G++R F + + +A A+ +
Sbjct: 263 RQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAVDALQAIGK 322
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ FS E ++LFAP G + + + K + GK++ F FV + A AV +
Sbjct: 244 IYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALN 303
Query: 141 TQEVSGRIIRVEFAKKFKKP----RPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K ++ + Q A + ++++ L+V NL ++ S L E
Sbjct: 304 DKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEKLEE 363
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V + G+S G+GFV F+T EEA AI+ ++ + + G+PL + Q+
Sbjct: 364 EFKP-FGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQR 422
Query: 254 ND 255
D
Sbjct: 423 KD 424
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL +++ F P GT+ +++ GK+R F FV ++PEEA A+ + +
Sbjct: 347 LFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMN 406
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ V+G+ + V A++ R Q AR
Sbjct: 407 QRMVNGKPLYVALAQRKDVRRSQLEQQIQAR 437
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+++
Sbjct: 63 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDEL 122
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + R R+ ++ QR SA R +++ NL + + L + FSA F
Sbjct: 123 NYSLIENRPCRIMWS--------QRDPSA-RRSGDGNIFIKNLHPAIDNKALHDTFSA-F 172
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G+S +GFV + T E AEAAI +++G L R
Sbjct: 173 GRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 217
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
E LYV L+ V L E FS S +V ++ +S GY +V++ E+ E
Sbjct: 58 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEK 117
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
AI L+ + RP R+ + Q++
Sbjct: 118 AIDELNYSLIENRPCRIMWSQRD 140
>gi|300121123|emb|CBK21504.2| unnamed protein product [Blastocystis hominis]
Length = 302
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 16/197 (8%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN- 137
K+ V LP+S + + + F CG + D + + + K+R F FVT AS +AA N
Sbjct: 5 KVIVLGLPFSCDDSALYDYFQECGEITDSRVMVNRENKKSRGFGFVTFAS----EAAFNN 60
Query: 138 --QFDTQEVSGRIIRVEFA-------KKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVR 187
+ + E GR I+VE A +K K RPQ +AP +K+ +++L+W V
Sbjct: 61 ALEKNGAEFDGRTIKVEKATERPKRDQKENKDRPQHEQAAPKEFIDTNKIIITSLAWSVN 120
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR+ FS N V+ + G+S G G V FAT+E + AI ++G EL GR +
Sbjct: 121 DDSLRQAFSKYGNLEECTVLKDRQSGKSRGRGIVRFATEEAMKKAIEEMNGTELEGRAIA 180
Query: 248 LKFGQKNDDVSESNKEE 264
++ ++E KEE
Sbjct: 181 VRQFLPKSQMAEKAKEE 197
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + ++ ++A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P +RS ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRRSGVG-------NIFVKNLDKSINNKVLYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSG 97
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 239 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 298
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 299 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 358
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 359 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 416
Query: 254 NDD 256
++
Sbjct: 417 KEE 419
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
A+ A++ + + G+ +R+ ++++ P ++S +++ NL + + L
Sbjct: 111 AERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKAL 161
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 162 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 212
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NLP + A++ +F G+V+ V + + GK+R F FV+ + E A+ V +
Sbjct: 179 VFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLH 238
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E G+ I V E KF+K + +R+ R LYV NL +
Sbjct: 239 DKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERN----QRYQGVNLYVKNLDDSITDD 294
Query: 190 HLREFFSANFNPVSSKVVFESN-EG-RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LRE F+ N SSKV+ +++ EG RS G+GFV F + EEA A++ ++G+ + +PL
Sbjct: 295 ILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLY 354
Query: 248 LKFGQKNDD 256
+ Q+ D+
Sbjct: 355 VALAQRKDE 363
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+GR+I V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERI----NRYQGVNLYVKNLDDGIDDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|367016631|ref|XP_003682814.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
gi|359750477|emb|CCE93603.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
Length = 402
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ LYV NL S + +K F G + +V+I+ K N N+AFV +A A+
Sbjct: 44 KVLYVGNLDTSINEEILKQYFQVGGPIANVKIMVDKNNSNANYAFVEYFQSHDANIALQT 103
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ ++++ +A + ++ P E L+V +L+ V LR F
Sbjct: 104 LNGKQIENNVVKINWAFQSQQVSPD--------EATFNLFVGDLNVDVDDETLRNAFKEF 155
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V+++ G S GYGFVSF ++EEA+ A+ ++ G EL GRPLR+ + K
Sbjct: 156 PTYLQGHVMWDMQTGGSRGYGFVSFGSQEEAQKAMDAMQGHELNGRPLRINWASK 210
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV E+AQ AV +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N+ + E LF G + ++K + GK R F FV S E AQ AV++ +
Sbjct: 262 VYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMN 321
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL-----------YVSNLSWKVRST 189
E G+ + V A+K R +R A R Q KL ++ NLS +V
Sbjct: 322 DYEFHGKKLYVGRAQK----RHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDN 377
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+ FSA F ++S V G+S G+GFV +++ EEA AI+ ++ + L G+PL +
Sbjct: 378 LLKTEFSA-FGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVA 436
Query: 250 FGQKND 255
Q+ D
Sbjct: 437 LAQRKD 442
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+ G V + + + + +A+V + ++ + A+ +
Sbjct: 81 LYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEEL 140
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++++ P +++ + +++ NL + + L + FSA
Sbjct: 141 NYSLIKGRACRIMWSQR--DPSLRKTGTG-------NIFIKNLDPAIDNKALHDTFSAFG 191
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + G S GYGFV FA+ + A AAI ++G L
Sbjct: 192 TILSCKVALDEY-GNSKGYGFVHFASIDSANAAIEHVNGMLL 232
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL +K F+ GT+ +++ + GK++ F FV +SPEEA A+ + +
Sbjct: 365 LFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMN 424
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ ++G+ + V A++ R Q A AR
Sbjct: 425 QRMLAGKPLYVALAQRKDVRRSQLEAQIQAR 455
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L V L E FS PV+S +V ++ +S GY +V++ ++ E A+
Sbjct: 81 LYVGELDPSVTEAMLFEIFS-TVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEE 139
Query: 236 LDGKELMGRPLRLKFGQKN 254
L+ + GR R+ + Q++
Sbjct: 140 LNYSLIKGRACRIMWSQRD 158
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 207
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 208 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 267
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 268 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTGMNGRIVATKPLYVALAQR 325
Query: 254 NDD 256
++
Sbjct: 326 KEE 328
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLY 178
+A+V P +A+ A++ + + G+ +R+ ++++ P R++ ++
Sbjct: 8 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR----------DPPLRKSGVGNIF 57
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI ++G
Sbjct: 58 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG 115
Query: 239 KELMGR 244
L R
Sbjct: 116 MLLNDR 121
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP + E+K F G + ++K + G +R+F FV SPE A AV + +
Sbjct: 240 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMN 299
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 300 GISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFE----KLQGSNLYLKNLDDSVNDE 355
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N S KV+ S +G S G+GFV++++ EEA A+S ++GK + +PL +
Sbjct: 356 KLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVA 414
Query: 250 FGQKNDD 256
F Q+ ++
Sbjct: 415 FAQRKEE 421
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L S ++ +LF V V + + ++ +A+V A+PE+A A++ +
Sbjct: 60 LYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDSLN 119
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ R IR+ + + P + S +++ NL + + L E FSA
Sbjct: 120 YAPIRDRPIRIMLSNR--DPSTRLSGKG-------NVFIKNLDPSIDNKALYETFSAFGT 170
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV ++ GRS GYGFV F +E A+AAI L+G L
Sbjct: 171 ILSCKVAMDA-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL 210
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 36 SSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEI 95
+S + SL+Y P R+ +++ + +D + + K N+ ++ NL S +
Sbjct: 111 ASRAMDSLNYA-PIRDRPIRIMLSNRDPSTRL----SGKGNV----FIKNLDPSIDNKAL 161
Query: 96 KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF------DTQEVSGRII 149
F+ GT++ ++ G+++ + FV E AQAA+++ D Q G +
Sbjct: 162 YETFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 221
Query: 150 RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE 209
R ++ R + + A R T +YV NL ++ L++ F + +SS VV +
Sbjct: 222 R-------RQDRSRSESGAVPRFT--NVYVKNLPKEITDDELKKTF-GKYGDISSAVVMK 271
Query: 210 SNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
G S +GFV+F + E A A+ ++G L L + QK +S +EEE
Sbjct: 272 DQSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRAQK-----KSEREEE 322
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + F+ PV + V RS GY +V+FA E+A A+ SL
Sbjct: 60 LYVGDLDPSVDEPQLLDLFN-QVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDSL 118
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + RP+R+ ++ S K
Sbjct: 119 NYAPIRDRPIRIMLSNRDPSTRLSGK 144
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|409049562|gb|EKM59039.1| hypothetical protein PHACADRAFT_249208 [Phanerochaete carnosa
HHB-10118-sp]
Length = 292
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVN 137
+ ++V L W+ A +++ FA CG +V + + G++R F FVT ASPE A+
Sbjct: 39 KTIFVGMLSWNVDNAWLESEFAQCGEIVSAHVQTDRNTGRSRGFGFVTFASPEAVDKAL- 97
Query: 138 QFDTQEVSGRIIRVEFA-----KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+ + +E+ GR I V+ + + ++ R + AP+ E +L+V NLS+ L
Sbjct: 98 ELNGKEIDGRSINVDKSVEKDQNQVRERRARTFGDAPS-EPSSRLFVGNLSFDATEEQLW 156
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E FS + S + + GR G+G+V F E A+ A SL G+E+ GR +RL+F Q
Sbjct: 157 EVFSDYGSIKSVHMPTSRDSGRPKGFGYVEFEDIESAKKAHESLVGQEIAGRAIRLEFSQ 216
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 265
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 266 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 321
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 322 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 379
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 380 LAQRKEE 386
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 114 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 172
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 173 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 227
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 228 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 281
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEA------- 132
LYV +L + A + F+P G V+ + + + ++ +A+V P +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTSS 72
Query: 133 ------QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKV 186
+ A++ + + G+ IR+ ++++ P ++S +++ NL +
Sbjct: 73 SPLTVTERALDTMNFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSI 123
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ L + FSA N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 DNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 179
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 221 GKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 280
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 281 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 254 NDD 256
++
Sbjct: 339 KEE 341
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSG 97
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDIKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 134 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 193
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 194 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 253
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 254 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 311
Query: 254 NDD 256
++
Sbjct: 312 KEE 314
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
A+ A++ + + G+ +R+ ++++ P ++S +++ NL + + L
Sbjct: 6 AERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKAL 56
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 57 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 107
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + +NLF P GT+ V + K GK+R F FV + E+A AV +
Sbjct: 226 VYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALN 285
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
E G+ + V A+K ++ + Q AS + +++ L++ NL + L+E
Sbjct: 286 DTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKE 345
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V + G+S G+GFV F+T EEA AI+ + + + G+PL + Q+
Sbjct: 346 EF-APFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQR 404
Query: 254 ND 255
D
Sbjct: 405 KD 406
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Query: 55 QVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK 114
Q +T T +E E +N+ LYV L S S A + ++F+P G+V + + +
Sbjct: 21 QPAATPATTAIEA--ESPNVENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDA 78
Query: 115 GGKNR-NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET 173
K +A+V E + A+ + + + GR R+ ++++ R + S +
Sbjct: 79 ITKTSLGYAYVNFNDHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGSGN------ 132
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
+++ NL + + L E FS N +S K+ + G+S G+GFV F +E A AI
Sbjct: 133 ---IFIKNLHPDIDNKTLYETFSVFGNILSCKIANDET-GKSKGFGFVHFENEEAAREAI 188
Query: 234 SSLDGKELMGR 244
+++G L G+
Sbjct: 189 DAINGMLLNGQ 199
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 15/234 (6%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQT----QKQNIRRK--- 80
I++ + + SL Y NF L T ++ +P + + ++R+K
Sbjct: 72 IRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGSG 131
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + F+ G ++ +I + GK++ F FV + E A+ A++
Sbjct: 132 NIFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ + V A K + ++S AR +YV NL + F +
Sbjct: 192 NGMLLNGQEVYV--APHVSK-KDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKP-Y 247
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++S + + EG+S G+GFV F E+A A+ +L+ E G+ L + QK
Sbjct: 248 GTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQK 301
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL S ++K FAP GT+ +++ + GK++ F FV ++PEEA A+ + +
Sbjct: 329 LFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKN 388
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
Q V+G+ + V A++ R Q + AR
Sbjct: 389 QQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 419
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV L V L + FS + S +V ++ S GY +V+F E + AI L
Sbjct: 45 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKL 104
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + GRP R+ + Q++
Sbjct: 105 NYTAIKGRPCRIMWSQRD 122
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 16/186 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL + S E+K +FA GTV I++ GK++ F F+ PE+A +AV +
Sbjct: 221 VFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALN 280
Query: 141 TQEVSGRIIRVEFAKK-----------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++V+ + + V A+K F++ R +R A + LYV NL +
Sbjct: 281 GKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIA----KYQGMNLYVKNLHDDIDDE 336
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS F ++S V + G+S G+GFV +A+ EEA A++ ++G+ + G+P+ +
Sbjct: 337 TLRTEFS-QFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVA 395
Query: 250 FGQKND 255
Q+ D
Sbjct: 396 LAQRRD 401
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV---TMASPEEAQAAV 136
LYV +L + A++ +F+ G V + + + ++ +A+V ++ P A+ A+
Sbjct: 40 LYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERAL 99
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+Q + + GR +R+ ++ + P ++S +++ NL V + L + FS
Sbjct: 100 DQLNYTPLVGRPMRIMWSHR--DPAFRKSGVG-------NIFIKNLDRSVDNKALHDTFS 150
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
A N +S KV + +G S GYGFV F E A AI ++G L G+
Sbjct: 151 AFGNILSCKVA-QDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGK 197
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL ++ F+ GT+ +++ GK+R F FV ASPEEA AV + +
Sbjct: 324 LYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMN 383
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ 163
+ + G+ I V A++ R Q
Sbjct: 384 GRMIKGKPIYVALAQRRDVRRAQ 406
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEE---AEAA 232
LYV +L V L E FS PV+S +V ++ RS GY +V++ + + AE A
Sbjct: 40 LYVGDLDRDVTEAQLFEVFS-QIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERA 98
Query: 233 ISSLDGKELMGRPLRLKFGQKN 254
+ L+ L+GRP+R+ + ++
Sbjct: 99 LDQLNYTPLVGRPMRIMWSHRD 120
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 161 VYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQKAVDELN 220
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+SG+ I V A+K K+ Q R LYV L + LR+
Sbjct: 221 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYIDDERLRK 280
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++GK + +PL + Q+
Sbjct: 281 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQR 338
Query: 254 NDD 256
++
Sbjct: 339 KEE 341
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 56/245 (22%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN-- 137
LYV +L + A + F+P G ++ + + + ++ +A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALDTM 72
Query: 138 ---------------------------------------QFDTQEVSGRII--------- 149
F+TQE + R I
Sbjct: 73 NFDVINGKSVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 132
Query: 150 -RVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVV 207
+ F +FK R +R A AR + +YV N + HL++ F F P S V
Sbjct: 133 DQKVFVGRFKS-RKEREAELGARAKEFTNVYVKNFGEDMDDEHLKDLF-GKFGPTLSVKV 190
Query: 208 FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVSESNKEEED 266
G+S G+GFVSF E+A+ A+ L+GKEL G+ + + QK + +E ++ E
Sbjct: 191 MTDERGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQ 250
Query: 267 VSEDQ 271
+ +D+
Sbjct: 251 MKQDK 255
>gi|444316792|ref|XP_004179053.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
gi|387512093|emb|CCH59534.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
Length = 470
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 9/176 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S + +K F G + +V+II K K N+AFV +A A+ +
Sbjct: 85 LYVGNLDKSINEDSLKQYFQVGGPIANVKIIVDKNNKYCNYAFVEYLKHHDANVALQTLN 144
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ + +I+++ +A F+ Q+S++ + L++ +L+ V L F +
Sbjct: 145 GKHIEKKIVKINWA--FQS---QQSSN----DDTFNLFIGDLNIDVNDESLTAAFKDFPS 195
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
V + V+++ GRS GYGF SF+T+ +A+ A+ + GKEL GRP+R+ + K D+
Sbjct: 196 FVQAHVMWDMQTGRSRGYGFASFSTQNDAQLAMDQMQGKELNGRPIRINWASKRDN 251
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET K LYV NL + L+++F + K++ + N + Y FV + +
Sbjct: 77 GRETSDKILYVGNLDKSINEDSLKQYFQVGGPIANVKIIVDKNN-KYCNYAFVEYLKHHD 135
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK + + +++ +
Sbjct: 136 ANVALQTLNGKHIEKKIVKINW 157
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 129 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 188
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 189 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 248
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 249 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 306
Query: 254 NDD 256
++
Sbjct: 307 KEE 309
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
A+ A++ + + G+ +R+ ++++ P ++S +++ NL + + L
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKAL 51
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 52 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 102
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P +S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLHKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSG 97
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 156 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 215
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 216 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 275
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 276 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 333
Query: 254 NDD 256
++
Sbjct: 334 KEE 336
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 115 GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
GG NF +A A+ A++ + + G+ +R+ ++++ P ++S
Sbjct: 15 GGIILNFENFLLA----AERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG------ 62
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
+++ NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI
Sbjct: 63 -NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 119
Query: 235 SLDGKELMGR 244
++G L R
Sbjct: 120 KMNGMLLNDR 129
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 181
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 182 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 241
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 242 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 299
Query: 254 NDD 256
++
Sbjct: 300 KEE 302
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+++ NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 87
Query: 237 DGKELMGR 244
+G L R
Sbjct: 88 NGMLLNDR 95
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P +S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLHKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSG 97
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 181
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 182 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 241
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 242 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 299
Query: 254 NDD 256
++
Sbjct: 300 KEE 302
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+++ NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 87
Query: 237 DGKELMGR 244
+G L R
Sbjct: 88 NGMLLNDR 95
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+ G++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + LF G V+ V+++ +GGK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q + R LYV NL + L++
Sbjct: 253 GKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A+S ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + ++ +A V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P +RS +++ NL+ + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRRSGVG-------NVFIKNLNKTIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S G+GFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGHGFVHFETEEAAERAIEKMNGMLLNDR 166
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V + RS GY V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSG 97
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ ++K +FA G + V ++K + G++R F FV A E+AQ AV++ +
Sbjct: 193 IYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKF---KKPRPQRSASAPARETQHKLYVSNLSWKV 186
+E++G++I V E +KF K+ R QR LYV NL +
Sbjct: 253 GKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-------NLYVKNLDDSI 305
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
LR+ F+ S+KV+ + + R G+GFV F++ EEA A++ ++G+ + +PL
Sbjct: 306 DDERLRKEFAPYGTITSAKVMTDGPQSR--GFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RLKFGQKNDD 256
+ Q+ ++
Sbjct: 364 YVALAQRREE 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ N+ + + L + FSA
Sbjct: 73 NYDVIKGRPIRIMWSQR--DPGLRKSGVG-------NIFIKNMDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVV--CDERGSKGYGFVHFETEEAANRAIETMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NYDVIKGRPIRIMWSQRDPGLRKSG 97
>gi|365983576|ref|XP_003668621.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
gi|343767388|emb|CCD23378.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
Length = 499
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL S + +K F G + DV+I+ K +N N+AFV +A A+
Sbjct: 87 RVLYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDKKNQNVNYAFVEYLKSHDANVALQT 146
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ +II++ +A F+ + S L+V +L+ V L F
Sbjct: 147 LNGIQIENKIIKINWA--FQSQQNLNSNDT------FNLFVGDLNIDVDDETLSSNFKNF 198
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ + + V+++ RS GYGFVSFA +++A+ A+ ++ GKE+ GRP+R+ + K
Sbjct: 199 PSYIQAHVMWDMQTSRSRGYGFVSFADRDQAQNAMDTMQGKEINGRPIRINWATK 253
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 165 SASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
SA+ RET + LYV NL + L+++F K++ + + ++ Y FV +
Sbjct: 76 SATHGGRETSDRVLYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDK-KNQNVNYAFVEY 134
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
+A A+ +L+G ++ + +++ +
Sbjct: 135 LKSHDANVALQTLNGIQIENKIIKINW 161
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 31/203 (15%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++YV NLPW+ +K+ GTV+ ++++ GG ++ V ++P+EAQ A++
Sbjct: 159 RVYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEAGGWSKGCGLVEFSTPDEAQNAIDML 218
Query: 140 DTQEVSGRIIRVEFAKK-----------------------------FKKPRPQRSASAPA 170
+ E+ GR I V ++ + PR S + +
Sbjct: 219 NDTELEGRNIFVREDREPDGGSITSIARRGGRGGRSSGGRGNSRFAGRGPREGNSGHSHS 278
Query: 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230
+ + ++YV NL W S +L F + + ++VV E +GRS G+G V F + EA+
Sbjct: 279 SDVK-QVYVGNLPWDTTSRNLENLFQSAGDVERAEVV-EFPDGRSRGFGIVKFKSSSEAQ 336
Query: 231 AAISSLDGKELMGRPLRLKFGQK 253
AI L+G E GR L ++ ++
Sbjct: 337 CAIDELNGTEHNGRRLEVRLDKR 359
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE--IIKHKGGKNRNFAFVTMASPEEAQAAV 136
R++YV NL W ++K+ G DVE +I GG+++ VT A+ EAQ A+
Sbjct: 70 RRVYVGNLSWKVKWQDLKDHMRSAG---DVEHAVIMEVGGRSKGCGIVTYATESEAQNAI 126
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ E+ GR I F + + +ASA R ++YV NL W V+ L++
Sbjct: 127 ETLNDTELDGRKI-------FVREDREENASAQPRAKGCRVYVGNLPWTVKWQALKDHMK 179
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ + V+ E+ G S G G V F+T +EA+ AI L+ EL GR +
Sbjct: 180 QAGTVIHADVLEEAG-GWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNI 228
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++YV NLPW + ++NLF G V E+++ G++R F V S EAQ A+++
Sbjct: 282 KQVYVGNLPWDTTSRNLENLFQSAGDVERAEVVEFPDGRSRGFGIVKFKSSSEAQCAIDE 341
Query: 139 FDTQEVSGRIIRVEFAKK 156
+ E +GR + V K+
Sbjct: 342 LNGTEHNGRRLEVRLDKR 359
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
T ++YV NLSWKV+ L++ + V V+ E GRS G G V++AT+ EA+ A
Sbjct: 68 TGRRVYVGNLSWKVKWQDLKDHMRS-AGDVEHAVIMEVG-GRSKGCGIVTYATESEAQNA 125
Query: 233 ISSLDGKELMGRPL 246
I +L+ EL GR +
Sbjct: 126 IETLNDTELDGRKI 139
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + K ++ +A+V P +++ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + RS GY +V++ ++E A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + ++ N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPLRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KVV + N S GYGFV F T+E AE AI ++G L
Sbjct: 124 NVLSCKVVCDENG--SKGYGFVHFGTREAAERAIEKMNGIPL 163
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+PLR+ + Q++ + +S
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSG 97
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ FS E++NLF P G + + + K GK++ F FV S E A AV + +
Sbjct: 233 VYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELN 292
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
++++G+ + V A+K ++ + Q + + ++++ L+V NL + S L E
Sbjct: 293 DKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEE 352
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F++ EEA AI+ ++ + G+PL + Q+
Sbjct: 353 EFKP-FGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQR 411
Query: 254 ND 255
D
Sbjct: 412 KD 413
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 11/200 (5%)
Query: 46 NFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV 105
N + + +Q + E + TQ + LYV L S + A + +F+P G V
Sbjct: 17 NLDSAPVAIQETNVSSGNEGEDAADSTQLPDTSASLYVGELNPSVNEASLFEIFSPVGQV 76
Query: 106 VDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
+ + + K+ +A+V E+ + A++ + + GR R+ ++++ R
Sbjct: 77 SSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLR--- 133
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
R + +++ NL + + L + FSA F + S V +G S +GFV +
Sbjct: 134 ------RNGEGNIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATDEQGNSKCFGFVHYE 186
Query: 225 TKEEAEAAISSLDGKELMGR 244
T E A AAI +++G L R
Sbjct: 187 TAEAARAAIENVNGMLLNDR 206
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+T LYV L+ V L E FS S +V ++ +S GY +V+F E+ E
Sbjct: 47 DTSASLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEK 106
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
AI L+ + GRP R+ + Q++
Sbjct: 107 AIDDLNYSLIDGRPCRIMWSQRD 129
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ ++ LFA G + E++ +G K++ F FV A+PEEA+ AV
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG-KSKGFGFVAFANPEEAETAVQALH 210
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ G +++ + KK +R A + QHK LYV NL V
Sbjct: 211 DSTIEGTDLKLHVCRAQKKS--ERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 268
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F + N S+KV+ + N GRS G+GFV F EEA +A++ ++ K + +PL +
Sbjct: 269 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 327
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 328 IAQRKED 334
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
A++ + + + G+ +R+ ++++ P +RS + +++ NL + + + +
Sbjct: 26 AMDTMNFEALHGKPMRIMWSQR--DPAMRRSGAG-------NIFIKNLDKVIDNKSIYDT 76
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KF--- 250
FS N +S KV + +G S GYGFV F T+E A+ AI ++G L G+ + + KF
Sbjct: 77 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 135
Query: 251 GQKNDDVSESNKE 263
Q+N ++ E+ K+
Sbjct: 136 AQRNRELGETAKQ 148
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 51 NLCLQVCSTLQDTT----VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPC 102
+L L VC + + ++ K EQ + + +++ LYV NL + +K F
Sbjct: 218 DLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESY 277
Query: 103 GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP 162
G + +++ + G+++ F FV PEEA +AV + +++ V + + V A++ + R
Sbjct: 278 GNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRA 337
Query: 163 Q 163
Q
Sbjct: 338 Q 338
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ ++ LFA G + E++ +G K++ F FV A+PEEA+ AV
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG-KSKGFGFVAFANPEEAETAVQALH 273
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ G +++ + KK +R A + QHK LYV NL V
Sbjct: 274 DSTIEGTDLKLHVCRAQKKS--ERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 331
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F + N S+KV+ + N GRS G+GFV F EEA +A++ ++ K + +PL +
Sbjct: 332 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 390
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 391 IAQRKED 397
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 98/188 (52%), Gaps = 15/188 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + + F+ G V+ + + + + + +A+V P +A+ A++
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ +R+ ++++ P +RS + +++ NL + + + + FS
Sbjct: 94 NFEALHGKPMRIMWSQR--DPAMRRSGAG-------NIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KF---GQKND 255
N +S KV + +G S GYGFV F T+E A+ AI ++G L G+ + + KF Q+N
Sbjct: 145 NILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 256 DVSESNKE 263
++ E+ K+
Sbjct: 204 ELGETAKQ 211
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 51 NLCLQVCSTLQDTT----VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPC 102
+L L VC + + ++ K EQ + + +++ LYV NL + +K F
Sbjct: 281 DLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESY 340
Query: 103 GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP 162
G + +++ + G+++ F FV PEEA +AV + +++ V + + V A++ + R
Sbjct: 341 GNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRA 400
Query: 163 Q 163
Q
Sbjct: 401 Q 401
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEA 231
T LYV +L V + L E FSA PV S V N R S GY +V+F +AE
Sbjct: 30 TMASLYVGDLHPDVNESILFEKFSAA-GPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
A+ +++ + L G+P+R+ + Q++
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRD 111
>gi|255639378|gb|ACU19985.1| unknown [Glycine max]
Length = 142
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 19/139 (13%)
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-------------- 171
M+S EEA+AA QF+ E+ GR +RV P P R+ SAP
Sbjct: 1 MSSVEEAEAAAQQFNGYELDGRALRVN-----SGPPPARNESAPRFRGGSSFGSRGGGPS 55
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+++++++VSNL+W V + L+ F N + ++ +++ GRS G+GFV+F++ +E +
Sbjct: 56 DSENRVHVSNLAWGVDNVALKSLFREQGNVLEARAIYDRESGRSRGFGFVTFSSPDEVNS 115
Query: 232 AISSLDGKELMGRPLRLKF 250
AI SL+G +L GR +R+
Sbjct: 116 AIQSLNGVDLNGRAIRVSL 134
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVE-IIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++V NL W +K+LF G V++ I + G++R F FVT +SP+E +A+
Sbjct: 60 RVHVSNLAWGVDNVALKSLFREQGNVLEARAIYDRESGRSRGFGFVTFSSPDEVNSAIQS 119
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
+ +++GR IRV A KP+
Sbjct: 120 LNGVDLNGRAIRVSLAD--SKPK 140
>gi|443895242|dbj|GAC72588.1| FOG: RRM domain [Pseudozyma antarctica T-34]
Length = 394
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 7/199 (3%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
IR ++V NLP + + ++++FA G + V+++ + + FV A+ AV
Sbjct: 25 IRPLVHVANLPSTTTERALRDMFASLGPIQSVKVVASRNSAGLAYGFVEFVDVSSAERAV 84
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPR------PQRSASAPARETQHKLYVSNLSWKVRSTH 190
D G I+V +AK+ P P RSA + L+V +LS V +
Sbjct: 85 RTLDGWLCFGIPIKVCWAKQSMHPEAMTVTEPDRSAPTHSNAGNAHLFVGDLSPDVDDSM 144
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L FS + V +V++++ G+S G+GFVSF +K +AE I+++ G+ L GR +R+ +
Sbjct: 145 LYSSFSRLPSLVDVRVMYDAETGKSRGFGFVSFRSKRDAETCIAAMQGQWLGGRQIRVNW 204
Query: 251 G-QKNDDVSESNKEEEDVS 268
QKN +S + E+ S
Sbjct: 205 ANQKNSQLSIMSATAENPS 223
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 197 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 256
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 257 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 316
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 317 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 374
Query: 254 NDD 256
++
Sbjct: 375 KEE 377
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 8/165 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + K ++ +A+V P +A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQR--DPSLRKSGVGGG---VGNIFIKNLDKSIDNKALYDTFSAFG 127
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 128 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 170
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + RS GY +V++ +A+ A+ +L
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV GR++ RVE + K+ Q R LYV NL + LR
Sbjct: 253 GKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRR 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G +R F FV + E AQ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V + G S G+GFV+F EEA+ A++ ++GKE+ GR L + QK
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQK 268
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIRGQPIRIMWSQRDPGLRKSG 97
>gi|390594976|gb|EIN04384.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 611
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 15/188 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ ++V L W+ ++ + FA CG VV + I GK+R F V A Q A++
Sbjct: 343 KTIFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKSRGFGHVEFADASSVQKAID 402
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQR---------SASAPARETQHKLYVSNLSWKVRS 188
+ +E+ GR + V+ A K + QR S SAP+ L+V NLSW
Sbjct: 403 TMNGKEIDGRPVNVDRAPGLNKNQ-QRENRAKAFGDSTSAPS----SVLFVGNLSWDATE 457
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ E F + S ++ + GR G+G+V F + A+AA +L G E+ GR +RL
Sbjct: 458 DAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEFVDVDAAKAAFEALSGTEIGGRSIRL 517
Query: 249 KFGQKNDD 256
+ Q D+
Sbjct: 518 DYSQPRDN 525
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 158 KKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRS 215
KK + ++APA E ++V LSW V L F+ VS++V + N G+S
Sbjct: 324 KKTKLADGSAAPAEQEEESKTIFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKS 383
Query: 216 AGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
G+G V FA + AI +++GKE+ GRP+ +
Sbjct: 384 RGFGHVEFADASSVQKAIDTMNGKEIDGRPVNV 416
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 213 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 272
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 273 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 332
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 333 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 390
Query: 254 NDD 256
++
Sbjct: 391 KEE 393
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH---------------------KGGKNR 119
LYV +L + A + F+P G ++ + + + + G+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPELLPAPQPGEEV 72
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYV 179
F + E ++ A++ + + G+ +R+ ++++ P ++S +++
Sbjct: 73 QFCARKIPRVEPSERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFI 123
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI ++G
Sbjct: 124 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM 181
Query: 240 ELMGR 244
L R
Sbjct: 182 LLNDR 186
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 16/186 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL + + E++ +F G V I+K + GK++ F F+ E A AAV +
Sbjct: 215 VFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALN 274
Query: 141 TQEVSGRII-----------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+ G+ + E +KF + R +R A + LYV NL +V
Sbjct: 275 GKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIA----KYQGMNLYVKNLVDEVDDD 330
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR F+ + S+KV+ +S G+S G+GFV +++ EEA A++ ++GK L+G+P+ +
Sbjct: 331 QLRAEFAPHGTITSAKVMKDS-AGKSKGFGFVCYSSPEEATRAVTEMNGKMLLGKPMYVA 389
Query: 250 FGQKND 255
Q+ +
Sbjct: 390 LAQRRE 395
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + F GT++ ++ G ++ + FV E AQ A+ + +
Sbjct: 125 IFIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVN 184
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH--KLYVSNLSWKVRSTHLREFFSAN 198
+ G+ + F F K R +R P + QH ++V NLS + + + F+ +
Sbjct: 185 GMLLEGKKV---FVGPFLK-RTER----PVDKEQHYTNVFVKNLSENLTDEEVEKMFNEH 236
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V+S + + G+S G+GF++F E A AA+++L+GKE+ G+ L QK
Sbjct: 237 -GMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQK 290
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 67 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 126
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 127 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 186
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 187 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 244
Query: 254 NDD 256
++
Sbjct: 245 KEE 247
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 229 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 288
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 289 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 348
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 349 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 406
Query: 254 NDD 256
++
Sbjct: 407 KEE 409
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
R+ F +S ++A+ A++ + + G+ +R+ ++++ P ++S ++
Sbjct: 88 RDLTFYYSSSRQDAERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIF 138
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI ++G
Sbjct: 139 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG 196
Query: 239 KELMGR 244
L R
Sbjct: 197 MLLNDR 202
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ ++ LFA G + E++ +G K++ F FV A+PEEA+ AV
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG-KSKGFGFVAFANPEEAETAVQALH 213
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ G +++ + KK +R A + QHK LYV NL V
Sbjct: 214 DSTIEGTDLKLHVCRAQKKS--ERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 271
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F + N S+KV+ + N GRS G+GFV F EEA +A++ ++ K + +PL +
Sbjct: 272 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 330
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 331 IAQRKED 337
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEA 231
T LYV +L V + L E FSA PV S V N R S GY +V+F +AE
Sbjct: 30 TMASLYVGDLHPDVNESILFEKFSAA-GPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 232 AISSLDGKELMGRPLRLKFGQKNDDVSESN 261
A+ +++ + L G+P+R+ + Q++ + S
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSG 118
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 51 NLCLQVCSTLQDTT----VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPC 102
+L L VC + + ++ K EQ + + +++ LYV NL + +K F
Sbjct: 221 DLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESY 280
Query: 103 GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP 162
G + +++ + G+++ F FV PEEA +AV + +++ V + + V A++ + R
Sbjct: 281 GNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRA 340
Query: 163 Q 163
Q
Sbjct: 341 Q 341
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+A+ AV++ +
Sbjct: 238 VYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMN 297
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 298 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 357
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 358 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 415
Query: 254 NDD 256
++
Sbjct: 416 KEE 418
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
+A+ A++ + + G+ +R+ ++++ P ++S +++ NL + +
Sbjct: 109 DAERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKA 159
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
L + FSA N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 160 LYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 211
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 221 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 280
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 281 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 254 NDD 256
++
Sbjct: 339 KEE 341
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + S ++K +F+ G + ++K + GK+R F FV SP+ A AAV + +
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLN 273
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
S ++ V A++ + +R A A+ Q + LY+ NL +
Sbjct: 274 GMTFSDKVWYVGRAQR----KGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEE 329
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS F ++S V +G S G GFV+F+T EEA A+S ++GK + +PL +
Sbjct: 330 RLKELFS-EFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVA 388
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 389 IAQRREE 395
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 11/161 (6%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTMASPEEAQAAVN 137
R LYV +L + ++ +LF+ VV + + + G + +A+V ++P++A A+
Sbjct: 33 RSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAME 92
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ ++G+ IR+ F+ + P +RS A +++ NL K+ + L E F A
Sbjct: 93 VLNFTPLNGKPIRIMFSHR--DPTTRRSGHA-------NVFIKNLDTKIDNKALYETF-A 142
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+F PV S V N G+S GYGF+ F +E+A++AI+ L+G
Sbjct: 143 SFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNG 183
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 42 SLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRRKLYVFNLPWSF 90
SL Y NF + L T + KP + T +++ +++ NL
Sbjct: 73 SLGYAYVNFSNPQDAAKAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKI 132
Query: 91 SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150
+ FA G V+ ++ G+++ + F+ + E+AQ+A+N+ + V+ R +
Sbjct: 133 DNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVY 192
Query: 151 V-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE 209
V F ++ ++ A+ + T +YV NLS L++ FS+ + ++S +V +
Sbjct: 193 VGPFVRRLER----IEANGSPKFT--NVYVKNLSETTSDEDLKKIFSS-YGAITSAIVMK 245
Query: 210 SNEGRSAGYGFVSFATKEEAEAAISSLDG 238
G+S G+GFV+F + + A AA+ L+G
Sbjct: 246 DQNGKSRGFGFVNFQSPDSAAAAVEKLNG 274
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V+ L + FS VS++V + S GY +V+F+ ++A A+ L
Sbjct: 35 LYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVL 94
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L G+P+R+ F ++
Sbjct: 95 NFTPLNGKPIRIMFSHRD 112
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
++V NL W+ + FA CGTV II K G+ + F +VT S + AA+
Sbjct: 185 VFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFESADALTAAMALT 244
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSAS------APARETQHKLYVSNLSWKVRSTHLRE 193
T E+ GR IRV+ + P+P R + AP L++ NLS+ V +RE
Sbjct: 245 GT-ELDGREIRVDVST----PKPPRDGNRQGRKEAPQSAPTTTLFLGNLSFNVTEDEIRE 299
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS VS + + + G G+G+V + E A+ A+ L+G E+ GR LRL +
Sbjct: 300 SFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGLNGVEIAGRSLRLDYAGG 359
Query: 254 NDD 256
D+
Sbjct: 360 RDN 362
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
A+ A++ + + G+ +R+ ++++ P ++S +++ NL + + L
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKAL 115
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KVV + N S GYGFV F T+E AE ++G L R
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERVSEKMNGMLLNDR 166
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +I+ LF P G ++ +++ + GK+R F FV+ PE A+ AV+ +
Sbjct: 193 VYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLN 252
Query: 141 TQEVSGRII------------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E+ G + + E KF+K + +R R LYV NL V
Sbjct: 253 GMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERIN----RYQGVNLYVKNLDDVVDD 308
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LR+ FS F ++S V S GRS G+GFV F++ EEA A++ ++G+ ++ +PL +
Sbjct: 309 ERLRKEFS-QFGTITSARVM-SEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYV 366
Query: 249 KFGQKNDD 256
Q+ +D
Sbjct: 367 ALAQRKED 374
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDTIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S K+ S+E S GYGFV F T+E A AI ++G L G+
Sbjct: 124 NILSCKIA--SDENGSKGYGFVHFETEEAARQAIEKVNGMLLNGK 166
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDTIKGRPIRIMWSQRDPSLRKSG 97
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K LF+ G + + ++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR + V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPLRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRPLR+ + Q++ + +S
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSG 97
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 5/180 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V L W+ +K+ F CG VV + + + G+++ F +V+ ++PE A+ A+ +
Sbjct: 393 IFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEM 452
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSAS--APARETQHK-LYVSNLSWKVRSTHLREFFS 196
+ +E+ GR + V A K P P A + K L+V N+S+ L E F
Sbjct: 453 NGKEIDGRAVNVNAATP-KTPNPAGRAKQFGDTVSAESKVLFVGNVSFNANEDMLWETFG 511
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+ + VS ++ + G+ G+G+V F + E A++A ++L+GK++ GR +RL F Q D+
Sbjct: 512 EHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKDIAGRNIRLDFSQPRDN 571
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+ASAP+ LYV +L V L E FS +S +V + RS GY +V+F
Sbjct: 2 NASAPSYPMA-SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+AE A+ +++ + G+P+R+ + Q++ + +S
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ FS E++ LF P G + + + K GK++ F FV S E A AV + +
Sbjct: 233 VYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELN 292
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
++++G+ + V A+K ++ + Q A+ + ++++ L+V NL + S L E
Sbjct: 293 DKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEE 352
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F++ EEA AI+ ++ + G+PL + Q+
Sbjct: 353 EFKP-FGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQR 411
Query: 254 ND 255
D
Sbjct: 412 KD 413
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 29/209 (13%)
Query: 55 QVCSTLQDTTVETKPEQTQKQNIRR------------------KLYVFNLPWSFSVAEIK 96
QV +L+ +++ P TQ+ N+ LYV L S + A +
Sbjct: 8 QVQESLEKLNLDSAPVATQETNVSSGNEGEDAADSSQLPDTSASLYVGELNPSVNEALLF 67
Query: 97 NLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
+F+P G V + + + K+ +A+V E+ + A+ + + + GR R+ +++
Sbjct: 68 EIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQ 127
Query: 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRS 215
+ R R + +++ NL + + L + FSA F + S V +G S
Sbjct: 128 RDPSLR---------RNGEGNIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATDEQGNS 177
Query: 216 AGYGFVSFATKEEAEAAISSLDGKELMGR 244
+GFV + T E A+AAI +++G L R
Sbjct: 178 KCFGFVHYETAEAAKAAIENVNGMLLNDR 206
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S +++ F P GT+ ++ + GK++ F FV +SPEEA A+ + +
Sbjct: 336 LFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMN 395
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ G+ + V A++ R Q AR
Sbjct: 396 QRMFHGKPLYVALAQRKDVRRSQLEQQIQAR 426
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+T LYV L+ V L E FS S +V ++ +S GY +V+F E+ E
Sbjct: 47 DTSASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEK 106
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
AI L+ + GRP R+ + Q++
Sbjct: 107 AIEELNYSLIDGRPCRIMWSQRD 129
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 188
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 189 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 248
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 249 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 306
Query: 254 NDD 256
++
Sbjct: 307 KEE 309
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 95
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 96 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 150
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 211 ELKRKFEQMKQDR 223
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV N P ++K +F+ G + ++K GK++ F FV P+ A+ AV
Sbjct: 194 LYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMH 253
Query: 141 TQEVSGRII-----------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+ GR++ + E +K +K R +R ++ LYV NL +
Sbjct: 254 GKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSN---YMLNVNLYVKNLDDNIDDK 310
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L E FS + + S+KV+ ++N RS G+GFV FA E+A A++ ++G + +PL +
Sbjct: 311 RLEEAFSVHGSITSAKVMKDANN-RSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 370 LAQRKED 376
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 103/195 (52%), Gaps = 10/195 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S E+ + F+ G ++ +I+ + G+++ + FV E A+ A+ + +
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
+ R++ + KF P+ +R + A R+ + + LYV N + + L+E FS F
Sbjct: 163 NMIIRDRVV---YVGKFI-PKTERKSQA--RKVKFNNLYVKNFPPETDNEKLKEMFS-EF 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V + NEG+S G+GFV + + AE A+ ++ GKE+ GR L Q+ ++ E
Sbjct: 216 GEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQE 275
Query: 260 SNKE--EEDVSEDQS 272
K+ E+ +E QS
Sbjct: 276 ELKQKIEKQRAERQS 290
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V + L+ FS +S++V + +S GYG+V+F + AE A+ L
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVL 74
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + LMGRP+R+ + Q++ + +S K
Sbjct: 75 NYEPLMGRPIRIMWSQRDPSLRKSGK 100
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 50/102 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + ++ F+ G++ +++K +++ F FV A+PE+A AV +
Sbjct: 298 LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMN 357
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNL 182
+ + + V A++ + R + R Q++ V+++
Sbjct: 358 GTIIGSKPLYVALAQRKEDRRAKLIEEHQQRLAQYRAPVASM 399
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK + +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKSQK-EREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K LF+ G + + ++ GK++ F FV+ E+AQ AV+ +
Sbjct: 180 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMN 239
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR + V A+K K+ Q R LYV NL + LR+
Sbjct: 240 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 299
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 300 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 357
Query: 254 NDD 256
++
Sbjct: 358 KEE 360
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 88 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 146
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E FS +
Sbjct: 147 GMLLNDRKV---FVGRFKS-RKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFS-KY 201
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V + G+S G+GFVSF E+A+ A+ ++GKEL GR + + QK
Sbjct: 202 GPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQK 255
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 94 EIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152
E + F+P G ++ + + + ++ +A+V P +A+ A++ + + GR +R+
Sbjct: 13 EAQQDFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIM 72
Query: 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
+++ + P ++S +++ NL + + L + FSA N +S KVV + N
Sbjct: 73 WSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 123
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
S GYGFV F T E AE AI ++G L R
Sbjct: 124 --SKGYGFVHFETHEAAERAIEKMNGMLLNDR 153
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
RS GY +V+F +AE A+ +++ + GRPLR+ + Q++ + +S
Sbjct: 37 RSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSG 84
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NLP + A++ +F G+V+ V + + GK+R F FV+ + E A+ V +
Sbjct: 194 VFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLH 253
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E G+ I V E KF+K + +R+ R LYV NL +
Sbjct: 254 DKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERN----QRYQGVNLYVKNLDDSITDD 309
Query: 190 HLREFFSANFNPVSSKVVFESN-EG-RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LRE F+ N SSKV+ +++ EG RS G+GFV F + EEA A++ ++G+ + +PL
Sbjct: 310 ILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLY 369
Query: 248 LKFGQKNDD 256
+ Q+ D+
Sbjct: 370 VALAQRKDE 378
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + + F+ G V+ + + + ++ +A+V PE+A+ A++
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ E+ G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDELKGKAIRIMWSQR--DPALRKSGVG-------NIFIKNLDKTIDNKMLYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV + G S GYGFV F T+E A AI LDG
Sbjct: 124 NILSCKVNV-NLAGESKGYGFVHFETEEAAVKAIEKLDG 161
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L + FS +S +V + RS GY +V+F E+AE AI ++
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ EL G+ +R+ + Q++ + +S
Sbjct: 73 NFDELKGKAIRIMWSQRDPALRKSG 97
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIKKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 208 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 267
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 268 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 327
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 328 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 385
Query: 254 NDD 256
++
Sbjct: 386 KEE 388
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 116 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 174
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 175 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 229
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 230 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 289
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 290 ELKRKFEQMKQDR 302
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F+ GT + V+++ GK++ F FV+ AS E A+ AV + +
Sbjct: 385 VYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMN 444
Query: 141 TQEVSGRIIRVEFAKK-----------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G++I V A+K F++ R +R R KLY+ NL +
Sbjct: 445 GKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERF----RRCRGVKLYIKNLDDTIDDE 500
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F A+F + S+V EGRS G+G + F++ EEA A++ ++G+ L +PL +
Sbjct: 501 KLRKEF-ASFGSI-SRVKVMQEEGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIA 558
Query: 250 FGQKNDD 256
Q+N++
Sbjct: 559 LAQRNEE 565
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAI---- 347
Query: 141 TQEVSGRII---RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+E++G ++ RV F +FK + + S +Y+ N + L+E FS
Sbjct: 348 -EEMNGTLLKNCRV-FVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSK 405
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSFA+ E A+ A+ ++GK++ G+ + + QK
Sbjct: 406 YGTTLSVKVMTDSS-GKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQK 460
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + ++ +A+V +AQ A++
Sbjct: 205 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDTM 264
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FS
Sbjct: 265 NFDVIKGKSIRLMWS--------QRDAYL-RKSGIGNVFIKNLDKSIDNKTLYEHFSTFG 315
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+SSKV+ S++ S GY FV F + A+ AI ++G L
Sbjct: 316 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGTLL 355
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 18/182 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ ++ F P G V +I K GK+R + +V + +AQ A+ ++
Sbjct: 293 LFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQHALKEY 352
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS-----------ASAPARETQHKLYVSNLSWKVRS 188
+E+ GR I ++ ++ KPRP SAP+ L++ NLS+ +
Sbjct: 353 QGREIDGRPINLDMSES--KPRPSNPRFDRAKQFGDVPSAPS----STLFIGNLSFNAQR 406
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+L + F VS ++ + + G+G++ F+T +EA+AA+ +L+G+ + GRP RL
Sbjct: 407 DNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEALNGEYVEGRPCRL 466
Query: 249 KF 250
F
Sbjct: 467 DF 468
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V LSW + L+ F ++V++E G+S GYG+V F TK +A+ A+
Sbjct: 293 LFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQHALKEY 352
Query: 237 DGKELMGRPLRLKFGQKNDDVSES 260
G+E+ GRP+ L D+SES
Sbjct: 353 QGREIDGRPINL-------DMSES 369
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 84 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 143
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 144 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 203
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 204 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 261
Query: 254 NDD 256
++
Sbjct: 262 KEE 264
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 95 IKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
+ + F+ G ++ +++ + G ++ + FV + E A+ A+ + + ++ R + F
Sbjct: 6 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FV 61
Query: 155 KKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
+FK R +R A AR + +Y+ N + L+E F F P S V G
Sbjct: 62 GRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESG 119
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSEDQ 271
+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +E ++ E + +D+
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 178
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++G++I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQK 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVMKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSG 97
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + LF G ++ V+++ +GGK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K Q + R LYV NL + L++
Sbjct: 253 GKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A+S ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 6/193 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ +++ + G ++ FV + E A+ A+ + +
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F +FK + + + + +Y+ N ++ L F F
Sbjct: 160 GMLLNDRKV---FVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLF-GRFG 215
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
+ S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK DD
Sbjct: 216 QILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTE 275
Query: 261 NKEE-EDVSEDQS 272
K + E V++D+S
Sbjct: 276 LKHKFEQVTQDKS 288
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V + RS GY V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSG 97
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F G++ ++ GK+R F F+ +P+ A AV + +
Sbjct: 227 VFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELN 286
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + LRE
Sbjct: 287 GKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLRE 346
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS NF ++S V G S G GFV+F+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 347 LFS-NFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 405
Query: 254 NDD 256
+D
Sbjct: 406 KED 408
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S S +++ LF+ G VV V + + ++ +A+V ++P +A A+
Sbjct: 48 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVL 107
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IRV ++ + P +RS SA +++ NL + + L E FS+
Sbjct: 108 NFAVLNNKPIRVMYSNR--DPSSRRSGSA-------NIFIKNLDKTIDNKTLHETFSSFG 158
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+S KV + G+S G+GFV + +E A+ AI SL+G + +P+
Sbjct: 159 TILSCKVAMDE-AGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPV 204
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + F+ GT++ ++ + G+++ F FV E AQ A+ +
Sbjct: 136 IFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLN 195
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F F R Q + + + ++V NLS L + F +
Sbjct: 196 GMLINDKPV---FVGPFL--RKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVF-GEYG 249
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +G+S +GF++F + A A+ L+GK++
Sbjct: 250 SITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKI 290
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS VS +V + RS GY +V+F+ +A A+ L
Sbjct: 48 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVL 107
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L +P+R+ + ++
Sbjct: 108 NFAVLNNKPIRVMYSNRD 125
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + L++
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH---KGGKNRNFAFVTMASPEEAQAAVN 137
LYV +L + A + F+P G ++ + + + +G + N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRG--SSNYAYVNFQHPKDAEHALD 70
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 71 TMNFDVIKGKPLRIMWSQR--DPSLRKSGMG-------NIFVKNLDKSINNKALYDTVSA 121
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 122 FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+PLR+ + Q++ + +S
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSG 97
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+A+ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + + + G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L++ F F
Sbjct: 160 GTLLNDRKV---FVGRFKS-RKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + ++ ++A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P +RS ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRRSGVG-------NIFVKNLDKSINNKVLYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSG 97
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+E++G+ I V A+K + +R + Q K LYV NL +
Sbjct: 253 GKELNGKQIYVGRAQK----KVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + + N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPLRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NVLSCKVVCDENG--SKGYGFVHFETREAAERAIEKMNGIPLNDR 166
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+PLR+ + Q++ + +S
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSG 97
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + L++
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH---KGGKNRNFAFVTMASPEEAQAAVN 137
LYV +L + A + F+P G ++ + + + +G + N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRG--SSNYAYVNFQHPKDAEHALD 70
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 71 TMNFDVIKGKPLRIMWSQR--DPSLRKSGMG-------NIFVKNLDKSINNKALYDTVSA 121
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 122 FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+PLR+ + Q++ + +S
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSG 97
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + LF G ++ V+++ +GGK++ F FV+ E+AQ AV++ +
Sbjct: 168 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 227
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K Q + R LYV NL + L++
Sbjct: 228 GKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQK 287
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A+S ++G+ + +PL + Q+
Sbjct: 288 EFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQR 345
Query: 254 NDD 256
++
Sbjct: 346 KEE 348
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 6/193 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ +++ + G ++ FV + E A+ A+ + +
Sbjct: 76 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMN 134
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F +FK + + + + +Y+ N ++ L F F
Sbjct: 135 GMLLNDRKV---FVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLF-GRFG 190
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
+ S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK DD
Sbjct: 191 QILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTE 250
Query: 261 NKEE-EDVSEDQS 272
K + E V++D+S
Sbjct: 251 LKHKFEQVTQDKS 263
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 213 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 272
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 273 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 332
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 333 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 390
Query: 254 NDD 256
++
Sbjct: 391 KEE 393
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 179
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 180 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 234
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 235 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 294
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 295 ELKRKFEQMKQDR 307
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ F+ E + LFAP G + + + K + GK++ F FV + A AV +
Sbjct: 246 IYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALN 305
Query: 141 TQEVSGRIIRVEFAKKFKKP----RPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K ++ + Q A + ++++ L++ NL ++ S L E
Sbjct: 306 DKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEE 365
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V + G+S G+GFV F+T EEA AI+ ++ + + G+PL + Q+
Sbjct: 366 EFKP-FGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQR 424
Query: 254 ND 255
D
Sbjct: 425 KD 426
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+++
Sbjct: 65 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDEL 124
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V GR R+ ++ QR SA R +++ NL + + L + FSA F
Sbjct: 125 NYSLVEGRPCRIMWS--------QRDPSA-RRSGDGNIFIKNLHPAIDNKALHDTFSA-F 174
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G+S +GFV + T E AEAAI +++G L R
Sbjct: 175 GRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDR 219
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 4/184 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV + E A+AA+ +
Sbjct: 153 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVN 212
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F K + + S + +YV N+ E F A +
Sbjct: 213 GMLLNDREV---FVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELF-APYG 268
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++S + + +G+S G+GFV++ + A A+ +L+ KE+ G+ + + QK + +E
Sbjct: 269 KITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEE 328
Query: 261 NKEE 264
K++
Sbjct: 329 LKKQ 332
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL +++ F P GT+ +++ GK++ F FV ++PEEA A+ + +
Sbjct: 349 LFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMN 408
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ ++G+ + V A++ R Q AR
Sbjct: 409 QRMINGKPLYVALAQRKDVRRSQLEQQIQAR 439
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
E LYV L+ V L E FS S +V ++ +S GY +V++ E+ E
Sbjct: 60 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEK 119
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
AI L+ + GRP R+ + Q++
Sbjct: 120 AIDELNYSLVEGRPCRIMWSQRD 142
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++K +F G + ++ + GK+R F FV+ +P+ A+ AV + +
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELN 253
Query: 141 TQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+E+ G+ I V A+K K+ Q R LYV NL + LR
Sbjct: 254 DKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERLR 313
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F+ S+KV+ +S RS G+GFV F++ EEA A++ ++G+ ++ +PL + Q
Sbjct: 314 REFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALAQ 373
Query: 253 KNDD 256
+ +D
Sbjct: 374 RKED 377
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + + F G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + R +R+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFEPLKNRPMRIMWSQR--DPSLRKSGVG-------NVFIKNLHKDIDNKAIFDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S +V + +G S GYGFV F T+E A AI+ ++G L
Sbjct: 124 NILSCRVATDE-QGNSRGYGFVHFETEEAANEAINKVNGMLL 164
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S T LYV +L V + L E F +S +V + RS GY +V+F
Sbjct: 3 SGGGNYTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQP 62
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+AE A+ +++ + L RP+R+ + Q++ + +S
Sbjct: 63 GDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSG 97
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 122 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 181
Query: 141 TQEVSGRII-----------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I + E +KF++ + +R +R LY+ NL +
Sbjct: 182 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 237
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 238 KLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 295
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 296 LAQRKEE 302
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 30 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 88
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS
Sbjct: 89 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG 144
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 145 KTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 197
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVMKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSG 97
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +++++F G + + ++ GK+R F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMLEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + LR+ F+
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N +S +V+ + + G+S G+GFVSF E+A+ A+ ++GKE+ G+P+ + QK
Sbjct: 216 NAMSIRVMTD-DSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQK 268
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVMKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSG 97
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+GR+I V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERI----NRYQGVNLYVKNLDDGIDDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + + ++A++ P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T E A AI +++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ +L V L E FS +S +V + RS Y +++F +AE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+GR+I V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERI----NRYQGVNLYVKNLDDGIDDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + + + ++A++ P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T E A AI +++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ +L V L E FS +S +V + RS Y +++F +AE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 269
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 270 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 325
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 326 KLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 383
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 384 LAQRKEE 390
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 176
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS
Sbjct: 177 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG 232
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 233 KTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 285
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 90 NFDVMKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 140
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 141 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 183
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSG 114
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K++F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
P+ A+ AV + + +EV+ G+ + V A+K K+ Q R L
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A++ ++
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMME--EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ ++ +PL + Q+ +D
Sbjct: 357 GRIIVTKPLYVALAQRKED 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 18/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K++F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
P+ A+ AV + + +EV+ G+ + V E +KF++ + +R R
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLN----RYQ 294
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME--EGRSKGFGFVCFSAPEEATKAV 352
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ ++G+ ++ +PL + Q+ +D
Sbjct: 353 TEMNGRIIVTKPLYVALAQRKED 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|50308683|ref|XP_454345.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643480|emb|CAG99432.1| KLLA0E08779p [Kluyveromyces lactis]
Length = 475
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
Q ++ + LYV NLP S +K F G++ V+II K + N+AFV P
Sbjct: 89 QGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPH 148
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
+A A + +EV G+++++ +A + S + ET L+V +L+ V
Sbjct: 149 DANVAYQTLNGKEVEGKVLKINWAFQ--------SQQVNSDET-FNLFVGDLNVDVDDAT 199
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L F + + + V+++ GRS GYGFVSF +++A+ A+ + G EL GR LR+ +
Sbjct: 200 LAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINW 259
Query: 251 GQKND 255
K +
Sbjct: 260 ASKRE 264
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 166 ASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
A+ RE K LYV NL + L+++F + S K++ + N + Y FV +
Sbjct: 87 ATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYF 145
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKF 250
+A A +L+GKE+ G+ L++ +
Sbjct: 146 EPHDANVAYQTLNGKEVEGKVLKINW 171
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+SG+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G + +PL + +
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYVSLAHR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQH--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q + + +S
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSG 97
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 128 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 187
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 188 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 247
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +P + Q+
Sbjct: 248 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQR 305
Query: 254 NDD 256
++
Sbjct: 306 KEE 308
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+++ NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI +
Sbjct: 36 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 93
Query: 237 DGKELMGR 244
+G L R
Sbjct: 94 NGMLLNDR 101
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQA 134
Q++ ++V NLP E+ + G + ++K G ++ F F+ E A
Sbjct: 197 QDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAK 256
Query: 135 AVNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQH------KLYVSNLSWKVR 187
V + +E+SG+ + A KK ++ R + +++ ++ LYV NLS +V
Sbjct: 257 CVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVD 316
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LRE F AN ++S V + G+S G+GFV F + +EA A++ ++GK + G+PL
Sbjct: 317 DDALRELF-ANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLY 375
Query: 248 LKFGQKND 255
+ Q+ D
Sbjct: 376 VALAQRKD 383
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 16/194 (8%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVT 125
T+P T N LYV +L + A++ LF+ G V + + + ++ +A+V
Sbjct: 13 TQPASTPLAN--SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVN 70
Query: 126 MAS---PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNL 182
S P+ A A+ + V+G+ +R+ ++ + P ++S +++ NL
Sbjct: 71 YNSALDPQAADRAMETLNYHVVNGKPMRIMWS--HRDPSARKSGVG-------NIFIKNL 121
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ + L + FSA +S KV ++N G S GYGFV F + A+ AI +++ KE+
Sbjct: 122 DKTIDAKALHDTFSAFGKILSCKVATDAN-GVSKGYGFVHFEDQAAADRAIQTVNQKEIE 180
Query: 243 GRPLRLKFGQKNDD 256
G+ + + QK D
Sbjct: 181 GKIVYVGPFQKRAD 194
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL ++ LFA GT+ +++K GK++ F FV S +EA AV + +
Sbjct: 306 LYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMN 365
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ V G+ + V A++ R Q A+ AR
Sbjct: 366 GKMVKGKPLYVALAQRKDVRRAQLEANMQAR 396
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + +K +F GT+ ++ K GK+R F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSHRVMI-KDGKSRGFGFVA 228
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
+PE A+ AV + + +E+ G+I+ V A+K K+ Q R L
Sbjct: 229 FENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNL 288
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ FS S+KV+ E EGRS G+GFV F+ EEA A++ ++
Sbjct: 289 YVKNLDDSIDDERLRKEFSPFGTITSAKVMLE--EGRSKGFGFVCFSAAEEATKAVTEMN 346
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 347 GRIVGSKPLYVALAQRKED 365
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 64 NFDLIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + +G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVA-QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGK 158
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSG 88
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 269
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 270 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 325
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 326 KLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 383
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 384 LAQRKEE 390
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 176
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS
Sbjct: 177 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG 232
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 233 KTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 285
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 90 NFDVMKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 140
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 141 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 183
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSG 114
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ +S ++K LF P G + + + K GK++ F FV E A AV + +
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELN 294
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K KK ++ L++ NL + S L E
Sbjct: 295 DKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEE 354
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F++ EEA AI+ ++ + G+PL + Q+
Sbjct: 355 EFKP-FGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQR 413
Query: 254 ND 255
D
Sbjct: 414 KD 415
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+ +
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ +++ + P +RS +++ NL + + L + FS F
Sbjct: 114 NYSPIEGRPCRIMWSQ--RDPSARRSGDG-------NIFIKNLHPAIDNKALHDTFST-F 163
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G+S +GFV + T E AEAAI +++G L R
Sbjct: 164 GKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 208
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 88/184 (47%), Gaps = 4/184 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV + E A+AA+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVN 201
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F K + + S + +YV N+ + L++ F+ +
Sbjct: 202 GMLLNDREV---FVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTP-YG 257
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++S + + EG+S G+GFV++ E A A+ L+ KE+ G+ + + QK + E
Sbjct: 258 AITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEE 317
Query: 261 NKEE 264
K++
Sbjct: 318 LKKQ 321
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
SA E+ LYV L+ V L E FS S +V ++ +S GY +V++
Sbjct: 44 SANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKM 103
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKN 254
E+ E AI L+ + GRP R+ + Q++
Sbjct: 104 EDGEKAIEELNYSPIEGRPCRIMWSQRD 131
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 181
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 182 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 241
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +P + Q+
Sbjct: 242 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQR 299
Query: 254 NDD 256
++
Sbjct: 300 KEE 302
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+++ NL + + L + FSA N +S KVV + N S GYGFV F T+E AE AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 87
Query: 237 DGKELMGR 244
+G L R
Sbjct: 88 NGMLLNDR 95
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ ++S + LF+P G + + + K + GK++ F FV E A AV + +
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K KK A+ L+V NL + S L E
Sbjct: 295 DKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEE 354
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F T EEA AI+ ++ + + G+PL + Q+
Sbjct: 355 EFKP-FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQR 413
Query: 254 ND 255
D
Sbjct: 414 KD 415
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL + +++ F P GT+ +++ + GK++ F FV +PEEA A+ + +
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMN 397
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
T+ ++G+ + V A++ R Q AR
Sbjct: 398 TRMINGKPLYVALAQRKDVRRSQLEQQIQAR 428
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+ +
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++ QR SA R +++ NL + + L + FSA F
Sbjct: 114 NYNPIEGRPCRIMWS--------QRDPSA-RRSGDGNIFIKNLHPAIDNKALHDTFSA-F 163
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V G+S +GFV + T E AEAAI +++G L R
Sbjct: 164 GKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 208
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ + G+++ F FV + E A+AA+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVN 201
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F K + + S + +YV N+ + FS F
Sbjct: 202 GMLLNDREV---FVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSP-FG 257
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++S + + +G+S G+GFV+F E A A+ L+ KE+ G+ + + QK
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++ S+ E LYV L+ V L E FS S +V ++ +S GY +V+
Sbjct: 40 EQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVN 99
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ E+ E AI L+ + GRP R+ + Q++
Sbjct: 100 YHKYEDGEKAIEELNYNPIEGRPCRIMWSQRD 131
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K LF G + V ++ GK++ F FV+ E+AQ AV+ +
Sbjct: 193 VYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR + V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F N+
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAREFTNVYIKNFGEDMDDEKLKELF-GNY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD-VS 258
P S V + G+S G+GFVSF E+A+ A+ ++GKEL GR + + QK + +
Sbjct: 215 GPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQN 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPLRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRPLR+ + Q++ + +S
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSG 97
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 360 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 419
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 420 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 479
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 480 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 537
Query: 254 NDD 256
++
Sbjct: 538 KEE 540
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
A+ A++ + + G+ +R+ ++++ P ++S +++ NL + + L
Sbjct: 232 AERALDTMNFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKAL 282
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 283 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 333
>gi|374725008|gb|EHR77088.1| putative RNA-binding protein [uncultured marine group II
euryarchaeote]
Length = 477
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+L+V LP E++ LFA G + D ++ G NR F FVT + +A AA+ +
Sbjct: 265 RLFVGGLPREVGTEELRALFAEHGDMTDCIVLTDDNGVNRGFGFVTYSEKAQADAAIAKL 324
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
D +V+GR I V A K + P KLYV NL +K L+ F
Sbjct: 325 DGHKVNGRKIGVRDADSDDKKSKRGKRKDP---EGLKLYVGNLPFKATEDQLKALFDG-V 380
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V+ V+ N G+ G+ F ++ +A + L+G EL+GR +++ Q
Sbjct: 381 ATVNELVMATDNAGKPKGFAFAFVKETDQGDAIVEKLNGTELLGRKIKVDVSQ 433
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + S ++K F+ G++ ++K + GK++ F FV SP+ A AAV + +
Sbjct: 204 VYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 263
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ ++ V A++ + +R A AR Q + LY+ NL K+
Sbjct: 264 GTTFNDKVWYVGRAQR----KGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDE 319
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS F ++S V +G S G GFV+F+T EEA A++ ++GK + +PL +
Sbjct: 320 KLKELFS-EFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVA 378
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 379 VAQRREE 385
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 85/158 (53%), Gaps = 6/158 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S ++ FA G V+ ++ G+++ + FV + E AQ+A+N+ +
Sbjct: 113 VFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLN 172
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F +F + + + A+ + T +YV NLS L++FFS N+
Sbjct: 173 GMLINDKEV---FVGRFVRHQERIEATGSPKFT--NVYVKNLSETTSDEDLKKFFS-NYG 226
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
++S +V + G+S G+GFV+F + + A AA+ L+G
Sbjct: 227 SITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNG 264
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + ++ +LF+ VV + + + + + + +A+V ++P++A A+
Sbjct: 25 LYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELL 84
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IR+ + + P ++S A +++ NL + + L+E F A+F
Sbjct: 85 NFTPLNGKAIRIMVSHR--DPSMRKSGHA-------NVFIKNLDTSIDNKALQETF-ASF 134
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
PV S V N G+S GYGFV F +E A++AI+ L+G
Sbjct: 135 GPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNG 173
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL ++K LF+ G++ +++ + G ++ FV ++PEEA A+N +
Sbjct: 307 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 366
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
+ + + + V A++ R +R A A TQ
Sbjct: 367 GKMIGKKPLYVAVAQR----REERKARLQAHFTQ 396
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS VS +V + S GY +V+F+ ++A A+ L
Sbjct: 25 LYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELL 84
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+ +R+ ++ + +S
Sbjct: 85 NFTPLNGKAIRIMVSHRDPSMRKSG 109
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E T N +YV NLP FS ++ N F+ G + +++ G +R F FV
Sbjct: 232 EHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKS 291
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LY 178
E A+ AV + + + ++ V A+K + +R A A+ K LY
Sbjct: 292 ECARNAVKNLNGKSIGDMVLYVARAQK----KSERQAELKAKFEHDKNQKFEKLQTVNLY 347
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + HLR+ F F V+S V + GRS G GFVSFAT E+A AI ++G
Sbjct: 348 LKNLDDDINDEHLRKLFEC-FGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNG 406
Query: 239 KELMGRPLRLKFGQKNDD 256
K + +PL + Q+ ++
Sbjct: 407 KMVGKKPLYVAVAQRKEE 424
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 17/228 (7%)
Query: 37 SNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRRKLYVFN 85
+ + SL Y NF +R + L T V KP + T +++ +++ N
Sbjct: 97 AGGSKSLGYGYVNFMSREDATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKN 156
Query: 86 LPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145
L + + +F+ GT++ ++ GK++ + F+ S A+ A+N + +
Sbjct: 157 LEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLAN 216
Query: 146 GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK 205
G+ I F F + R +R + A + +YV NL L FS+ F ++S
Sbjct: 217 GQKI---FVGLFIR-RQEREHTGDANNFTN-VYVKNLPKHFSDNDLLNEFSS-FGAITSA 270
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+V G S +GFV+F E A A+ +L+GK + L + QK
Sbjct: 271 IVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQK 318
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG--RSAGYGFVSFATKEEAEAAIS 234
LYV +L V L FS PV+S V G +S GYG+V+F ++E+A A+
Sbjct: 63 LYVGDLEASVGEDQLVALFS-QVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 235 SLDGKELMGRPLRLKFGQKNDDVSES 260
+L+ + G+P+R+ F ++ + +S
Sbjct: 122 NLNFTVVNGKPIRVMFSNRDPTLRKS 147
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E T N +YV NLP FS ++ N F+ G + +++ G +R F FV
Sbjct: 231 EHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKS 290
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LY 178
E A+ AV + + + ++ V A+K + +R A A+ K LY
Sbjct: 291 ECARNAVKNLNGKSIGDMVLYVARAQK----KSERQAELKAKFEHDKNQKFEKLQTVNLY 346
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + HLR+ F F V+S V + GRS G GFVSFAT E+A AI ++G
Sbjct: 347 LKNLDDDINDEHLRKLFEC-FGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNG 405
Query: 239 KELMGRPLRLKFGQKNDD 256
K + +PL + Q+ ++
Sbjct: 406 KMVGKKPLYVAVAQRKEE 423
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 12/160 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG--KNRNFAFVTMASPEEAQAAVNQ 138
LYV +L S ++ LF+ V + + G K+ + +V S E+A A+
Sbjct: 62 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 121
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ V+G+ IRV F+ + P ++S A +++ NL + + L E FS+
Sbjct: 122 LNFTVVNGKPIRVMFSN--RDPTLRKSGLA-------NVFIKNLEPNIDNKSLYEMFSSF 172
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+SSKV + N G+S GYGF+ F ++ A+ AI+ L+G
Sbjct: 173 GTILSSKVATDFN-GKSKGYGFIQFESESSAKDAINGLNG 211
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 42 SLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRRKLYVFNLPWSF 90
SL Y NF +R + L T V KP + T +++ +++ NL +
Sbjct: 101 SLGYGYVNFMSREDATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNI 160
Query: 91 SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150
+ +F+ GT++ ++ GK++ + F+ S A+ A+N + +G+ I
Sbjct: 161 DNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKI- 219
Query: 151 VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
F F + R +R + A + +YV NL L FS+ F ++S +V
Sbjct: 220 --FVGLFIR-RQEREHTGDANNFTN-VYVKNLPKHFSDNDLLNEFSS-FGAITSAIVMRD 274
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
G S +GFV+F E A A+ +L+GK + L + QK
Sbjct: 275 ANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQK 317
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG--RSAGYGFVSFATKEEAEAAIS 234
LYV +L V L FS PV+S V G +S GYG+V+F ++E+A A+
Sbjct: 62 LYVGDLEASVGEDQLVALFS-QVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 235 SLDGKELMGRPLRLKFGQKNDDVSES 260
+L+ + G+P+R+ F ++ + +S
Sbjct: 121 NLNFTVVNGKPIRVMFSNRDPTLRKS 146
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV+ +
Sbjct: 161 VYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDVMN 220
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 221 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 280
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 281 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 254 NDD 256
++
Sbjct: 339 KEE 341
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 7/155 (4%)
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KL 177
+ + FV + E A+ A+ + + ++ R + F FK R +R A AR + +
Sbjct: 106 KGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGPFKS-RKEREAELGARAKEFTNV 161
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
Y+ N + HL++ F F P S V G+S G+GFVSF E+A+ A+ ++
Sbjct: 162 YIKNFGEDMDDEHLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDVMN 220
Query: 238 GKELMGRPLRLKFGQKN-DDVSESNKEEEDVSEDQ 271
GKEL G+ + + QK + +E ++ E + +D+
Sbjct: 221 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 255
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F G + +++ GKNR F FV+ P+ A+ AV + +
Sbjct: 194 VYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELN 253
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+++ GR + V A+K K+ Q R LYV NL + LR+
Sbjct: 254 GKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRK 313
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F N S+KV+ ++N GRS G+GFV F++ EEA A++ ++G+ ++ +PL + Q+
Sbjct: 314 EFGPFGNITSAKVMTDAN-GRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQR 372
Query: 254 NDD 256
+D
Sbjct: 373 KED 375
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 82/174 (47%), Gaps = 6/174 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ + + ++ + FV + E A A+++ +
Sbjct: 101 VFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVN 160
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + + KF PR +R + +Y+ N ++ L F +
Sbjct: 161 GMLLNNKKV---YVGKFI-PRKEREKMLGDKARCFTNVYIKNFGDELDDDKLLVIFE-KY 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++S V + G++ G+GFVSF + AE A+ L+GK++ GRPL + QK
Sbjct: 216 GKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQK 269
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ +++ + P ++S +++ NL + + + + FSA
Sbjct: 73 NFDAIKNKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKTIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S +V + E S GYGFV F T+E A AIS ++G L
Sbjct: 124 NILSCRVATDE-EAASKGYGFVHFETEEAANKAISKVNGMLL 164
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + +S
Sbjct: 73 NFDAIKNKPIRIMWSQRDPSLRKSG 97
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
P+ A+ AV + + +EV+ G+ + V A+K K+ Q R L
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNL 298
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A++ ++
Sbjct: 299 YVKNLDDSIDDERLRKEFAPFGTITSAKVMME--EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ ++ +PL + Q+ +D
Sbjct: 357 GRIIVTKPLYVALAQRKED 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F G + ++ GK+R F F+ +P+ A AV + +
Sbjct: 221 VFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELN 280
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + LRE
Sbjct: 281 GKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSIGDDQLRE 340
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS NF ++S V G S G GFV+F+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 341 LFS-NFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 399
Query: 254 NDD 256
+D
Sbjct: 400 KED 402
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S S +++ LF+ G VV V + + ++ +A+V +P +A A+
Sbjct: 42 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEVL 101
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IRV ++ + P +RS SA +++ NL + + L E FS+
Sbjct: 102 NFAPLNNKPIRVMYSNR--DPSSRRSGSA-------NIFIKNLDKMIDNKSLHETFSSFG 152
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+S KV + G+S G+GFV + +E A+ AI SL+G + +P+
Sbjct: 153 TILSCKVAMDEG-GQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPV 198
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + F+ GT++ ++ +GG+++ F FV E AQ A+ +
Sbjct: 130 IFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLN 189
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F F R Q + + + ++V NLS L + F +
Sbjct: 190 GMLINDKPV---FVGPFL--RKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIF-GEYG 243
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +G+S +GF++F + A A+ L+GK++
Sbjct: 244 NITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKI 284
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS VS +V + RS GY +V+F +A A+ L
Sbjct: 42 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEVL 101
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L +P+R+ + ++
Sbjct: 102 NFAPLNNKPIRVMYSNRD 119
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 274
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 275 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 330
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 331 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 388
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 389 LAQRKEE 395
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 181
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 182 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFS-QF 236
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 237 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 290
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 95 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 145
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 146 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 188
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSLRKSG 119
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E T N +YV NLP FS ++ N F+ G + +++ G +R F FV
Sbjct: 255 EHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKS 314
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LY 178
E A+ AV + + + ++ V A+K + +R A A+ K LY
Sbjct: 315 ECARNAVKNLNGKSIGDMVLYVARAQK----KSERQAELKAKFEHDKNQKFEKLQTVNLY 370
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + HLR+ F F V+S V + GRS G GFVSFAT E+A AI ++G
Sbjct: 371 LKNLDDDINDEHLRKLFEC-FGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNG 429
Query: 239 KELMGRPLRLKFGQKNDD 256
K + +PL + Q+ ++
Sbjct: 430 KMVGKKPLYVAVAQRKEE 447
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 12/160 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG--KNRNFAFVTMASPEEAQAAVNQ 138
LYV +L S ++ LF+ V + + G K+ + +V S E+A A+
Sbjct: 86 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 145
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ V+G+ IRV F+ + P ++S A +++ NL + + L E FS+
Sbjct: 146 LNFTVVNGKPIRVMFSN--RDPTLRKSGLA-------NVFIKNLEPNIDNKSLYEMFSSF 196
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+SSKV + N G+S GYGF+ F ++ A+ AI+ L+G
Sbjct: 197 GTILSSKVATDFN-GKSKGYGFIQFESESSAKDAINGLNG 235
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 42 SLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRRKLYVFNLPWSF 90
SL Y NF +R + L T V KP + T +++ +++ NL +
Sbjct: 125 SLGYGYVNFMSREDATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNI 184
Query: 91 SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150
+ +F+ GT++ ++ GK++ + F+ S A+ A+N + +G+ I
Sbjct: 185 DNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKI- 243
Query: 151 VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
F F + R +R + A + +YV NL L FS+ F ++S +V
Sbjct: 244 --FVGLFIR-RQEREHTGDANNFTN-VYVKNLPKHFSDNDLLNEFSS-FGAITSAIVMRD 298
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
G S +GFV+F E A A+ +L+GK + L + QK
Sbjct: 299 ANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQK 341
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG--RSAGYGFVSFATKEEAEAAIS 234
LYV +L V L FS PV+S V G +S GYG+V+F ++E+A A+
Sbjct: 86 LYVGDLEASVGEDQLVALFS-QVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 235 SLDGKELMGRPLRLKFGQKNDDVSES 260
+L+ + G+P+R+ F ++ + +S
Sbjct: 145 NLNFTVVNGKPIRVMFSNRDPTLRKS 170
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F+ G + ++ GK+R F F+ SP++A AV + +
Sbjct: 218 VFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELN 277
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + A+K K+ Q A + LY+ NL + LRE
Sbjct: 278 GKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRE 337
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS F ++S V G S G GFV+F+T+EEA AI+ ++GK L G+PL + F Q+
Sbjct: 338 LFST-FGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQR 396
Query: 254 NDD 256
++
Sbjct: 397 KEE 399
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 89/167 (53%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S + +++ LF+ G VV V + + ++ +A+V ++P +A A+
Sbjct: 39 LYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEML 98
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IRV ++ + P +RS SA +++ NL + + L + FSA F
Sbjct: 99 NFVPLNNKPIRVMYSN--RDPSSRRSGSA-------NIFIKNLDKTIDNKTLHDTFSA-F 148
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ S V + G+S G+GFV + +E A++A+ SL+G + +P+
Sbjct: 149 GAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPV 195
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV E AQ+A+ +
Sbjct: 127 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLN 186
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + + F + + + ++ AR + ++V NLS L + FS N
Sbjct: 187 GMLINDKPV---YVGPFLRKQERDNSFDKARF--NNVFVKNLSESTTKEDLVKIFSEYGN 241
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +G+S +GF++F + ++A A+ L+GK++
Sbjct: 242 -ITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKI 281
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS VS +V + N RS GY +V+F+ +A A+ L
Sbjct: 39 LYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEML 98
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L +P+R+ + ++
Sbjct: 99 NFVPLNNKPIRVMYSNRD 116
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ Q QN LY+ NL S +++ LF+ G + ++++ + G ++ FV ++
Sbjct: 314 DKYQGQN----LYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTR 369
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+ + + + +SG+ + V FA++
Sbjct: 370 EEASQAITEMNGKMLSGKPLYVAFAQR 396
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
P+ A+ AV + + +EV+ G+ + V E +KF++ + +R + R
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLS----RYQ 294
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR F+ S+KV+ E +GRS G+GFV F+ EEA A+
Sbjct: 295 GVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME--DGRSKGFGFVCFSAPEEATKAV 352
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ ++G+ ++ +PL + Q+ +D
Sbjct: 353 TEMNGRIIVTKPLYVALAQRKED 375
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
P+ A+ AV + + +EV+ G+ + V E +KF++ + +R R
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLN----RYQ 294
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME--EGRSKGFGFVCFSAPEEATKAV 352
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ ++G+ ++ +PL + Q+ +D
Sbjct: 353 TEMNGRIIVTKPLYVALAQRKED 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K++F GT+ +++ GK+R F FV
Sbjct: 222 EREKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVA 281
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
P+ A+ AV + + +E++ G+ + V A+K K+ Q R L
Sbjct: 282 FEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNL 341
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A++ ++
Sbjct: 342 YVKNLDDTIDDERLRKEFTPFGTITSAKVMME--EGRSKGFGFVCFSQPEEATKAVTEMN 399
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 400 GRIVGSKPLYVALAQRKED 418
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
A+ A++ + + GR IR+ ++++ P ++S +++ NL + + +
Sbjct: 108 AERALDTMNFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAM 158
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 159 YDTFSAFGNILSCKVA-QDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGK 210
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMAS 128
E+ + + KLY NLP+S A + + G+ VE++ + G++R FAFVTM+S
Sbjct: 57 EEGAESPVNTKLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSS 116
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E+ A + D E GR +RV F+ KP+P+ ET++KL+V NLSW V S
Sbjct: 117 VEDCNAVIENLDGSEYGGRTLRVNFS---DKPKPKLPLYP---ETEYKLFVGNLSWSVTS 170
Query: 189 THLREFFSANFNPVSSKVVFESNEG 213
L + F N + ++V+++ G
Sbjct: 171 ESLNQVFQEYGNVIGARVLYDGETG 195
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KLY NL + S HL +P +V+++ + GRS G+ FV+ ++ E+ A I +
Sbjct: 67 KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126
Query: 236 LDGKELMGRPLRLKFGQK 253
LDG E GR LR+ F K
Sbjct: 127 LDGSEYGGRTLRVNFSDK 144
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL + E +LF G + + ++K + K R F FV A+ E AQ AV++ +
Sbjct: 249 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 308
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E G+ + V A+K +K Q + L++ NL +V L+
Sbjct: 309 DKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 368
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F ++S + +G+S G+GFV + T EEA A++ ++ + L G+PL + Q+
Sbjct: 369 EFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 427
Query: 254 ND 255
+
Sbjct: 428 KE 429
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + LF G V + + + ++ +A+V + E+ + A+++
Sbjct: 68 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 127
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++++ R + + +++ NL + + L + FSA
Sbjct: 128 NYTLIKGRPCRIMWSQRDPSLRKMGTGN---------VFIKNLDPAIDNKALHDTFSAFG 178
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + G + GYGFV F + E A AAI ++G L
Sbjct: 179 KILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLL 219
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL +K F+ GT+ +I+ + GK++ F FV +PEEA AV + +
Sbjct: 352 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 411
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ ++G+ + V A++ + R Q A AR
Sbjct: 412 QRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 442
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSF 223
S +AP T LYV L V L E F++ PV+S +V ++ RS GY +V+F
Sbjct: 59 SGTAP---TSASLYVGELDPSVTEAMLFELFNS-IGPVASIRVCRDAVTRRSLGYAYVNF 114
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
E+ E A+ L+ + GRP R+ + Q++
Sbjct: 115 HNMEDGEKALDELNYTLIKGRPCRIMWSQRD 145
>gi|299470875|emb|CBN78824.1| Protein for assembly of pre-ribosomal particles containing 18S rRNA
[Ectocarpus siliculosus]
Length = 517
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
K+Y+ LPW S ++K+ F CG +V VE K+ G++ A+VT S A A+ +
Sbjct: 283 KIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAI-EL 341
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQHKLYVSNLSWKVRSTHLREFFS 196
D QE+ GR +++ + F+KP R+ PA T +++ NLSW + +R+ F
Sbjct: 342 DGQELGGRWLKIMMS--FEKPDHARNGEPKVKPAGCTT--VFIGNLSWSIDEDTIRQTFG 397
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ S + + G G+G V F E +AA+ L ++MGRP+R+ +
Sbjct: 398 ECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAM-KLANSDVMGRPIRVDY 450
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
+KK K + + A+ K+Y+ L W +++FF A V+ + ++ +G
Sbjct: 261 SKKRKADDAEEGDAKKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQP-KNPDG 319
Query: 214 RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
RS+G +V+F + A AI LDG+EL GR L++
Sbjct: 320 RSSGTAYVTFDSAAAAAKAI-ELDGQELGGRWLKI 353
>gi|409049565|gb|EKM59042.1| hypothetical protein PHACADRAFT_169505 [Phanerochaete carnosa
HHB-10118-sp]
Length = 578
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 10/185 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ ++V L W+ +++ FA CG VV + + GK+R F FVT ASPE A+
Sbjct: 309 KTIFVGKLSWNVDNDWLESEFAECGEVVSARVQMDRNTGKSRGFGFVTFASPEAVDKAL- 367
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQ---RSASAPARETQHK---LYVSNLSWKVRSTHL 191
+ + +E+ GR I ++ K +K + Q R A A T L+V NLS+ L
Sbjct: 368 ELNGKEIDGRPINID--KSVEKDQNQVRERRAKAFGDATSAPSSVLFVGNLSFDATEDQL 425
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
E FS + S ++ + GR G+G+V F E A+ A L G+E+ GR +RL F
Sbjct: 426 WEVFSDYGSVKSVRMPTDRESGRPKGFGYVEFEDVESAKKAHEGLAGQEIAGRAVRLDFS 485
Query: 252 QKNDD 256
Q DD
Sbjct: 486 QPRDD 490
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
P+ A+ AV + + +EV+ G+ + V E +KF++ + +R R
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLN----RYQ 294
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME--EGRSKGFGFVCFSAPEEATKAV 352
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ ++G+ ++ +PL + Q+ +D
Sbjct: 353 TEMNGRIIVTKPLYVALAQRKED 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 12/193 (6%)
Query: 75 QNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEE 131
QN ++K +YV N P ++K +F G + ++K GK++ F FV +PE
Sbjct: 174 QNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEH 233
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--------LYVSNLS 183
A+AAV +E+ GR + A++ ++ + + ++ + + LYV NL
Sbjct: 234 AEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLD 293
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
++ L+E FS + P+SS V + RS G+GFV F E+A A++ +G+
Sbjct: 294 DEIDDERLKEIFS-KYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYS 352
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ +D
Sbjct: 353 KPLYVAIAQRKED 365
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + E+ + F+ G ++ +I + G ++ + FV + E A+ A+ + +
Sbjct: 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVN 151
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ G+++ + F PR R S ++ + +YV N + L+E F+ F
Sbjct: 152 NMSICGKVV---YVGNFI-PRSDRK-SQNRKQKFNNIYVKNFPPETDDEKLKEMFT-EFG 205
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V + +EG+S G+GFV + E AEAA++++ GKE+ GR L Q+ ++ E
Sbjct: 206 EIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQE 264
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + +++ F+ G V + + K+ + +V P++A+ A+ Q
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + V GR IR+ ++++ P ++S +++ NL+ + L + FS
Sbjct: 64 NYEVVMGRPIRIMWSQR--DPSLRKSGLG-------NIFIKNLAKTIEQKELYDTFSLFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
+S K+ + N G S GYGFV F +E A+ AI ++ + G+ + + F ++D S
Sbjct: 115 RILSCKIAMDEN-GNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKS 173
Query: 259 ESNKEE 264
++ K++
Sbjct: 174 QNRKQK 179
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL +K +F+ G + +++ +++ F FV +PE+A AV
Sbjct: 287 LYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVT--- 343
Query: 141 TQEVSGRIIRVEFAKKF----KKPRPQRSASAPARETQH 175
E +G RVE++K + + R A A+ TQH
Sbjct: 344 --EANG---RVEYSKPLYVAIAQRKEDRRAELAAKHTQH 377
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
P+ A+ AV + + +EV+ G+ + V E +KF++ + +R R
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLN----RYQ 294
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME--EGRSKGFGFVCFSAPEEATKAV 352
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ ++G+ ++ +PL + Q+ +D
Sbjct: 353 TEMNGRIIVTKPLYVALAQRKED 375
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ GK++ F FV+ EEA AV + +
Sbjct: 180 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMN 239
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++++G+++ V A+K + +R A R Q K LY+ NL +
Sbjct: 240 GKDINGKMVFVGRAQK----KVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDE 295
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 296 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 353
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 354 LAQRKEE 360
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 88 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 146
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 147 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYG 202
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + G+S G+GFVSF EEA A+ ++GK++ G+ + + QK
Sbjct: 203 KTLSVKVMTDPT-GKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQK 255
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVS 180
+A+V P +A+ A++ + + G+ IR+ +++ + P ++S +++
Sbjct: 41 YAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIK 91
Query: 181 NLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240
NL + + L + FSA N +S KVV + N S GY FV F T++ A+ AI ++G
Sbjct: 92 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 149
Query: 241 LMGR 244
L R
Sbjct: 150 LNDR 153
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF P + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPA---LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 310 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 254 NDD 256
++
Sbjct: 368 KEE 370
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG--- 212
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK
Sbjct: 213 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 265
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + S ++K F+ G + ++K + GK++ F FV SP+ A AAV + +
Sbjct: 214 VYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 273
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ ++ V A++ + +R A AR Q + LY+ NL K+
Sbjct: 274 GTTFNDKVWYVGRAQR----KGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDE 329
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS F ++S V +G S G GFV+F+T EEA A++ ++GK + +PL +
Sbjct: 330 KLKELFS-EFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVA 388
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 389 VAQRREE 395
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 86/158 (54%), Gaps = 6/158 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S ++ FA G+V+ ++ G+++ + FV + E AQ+A+N+ +
Sbjct: 123 VFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLN 182
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F +F + + + A+ + T +YV NLS L++FFS N+
Sbjct: 183 GMLINDKEV---FVGRFVRHQERIEATGSPKFT--NVYVKNLSETTSDEDLKKFFS-NYG 236
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
++S +V + G+S G+GFV+F + + A AA+ L+G
Sbjct: 237 AITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNG 274
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + ++ +LF+ VV + + + + + + +A+V ++P++A A+
Sbjct: 35 LYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELL 94
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IR+ + + P ++S A +++ NL + + L+E F A+F
Sbjct: 95 NFTPLNGKAIRIMVSHR--DPSMRKSGHA-------NVFIKNLDTSIDNKALQETF-ASF 144
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V S V N G+S GYGFV F +E A++AI+ L+G
Sbjct: 145 GSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNG 183
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL ++K LF+ G++ +++ + G ++ FV ++PEEA A+N +
Sbjct: 317 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 376
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
+ + + + V A++ R +R A A TQ
Sbjct: 377 GKMIGKKPLYVAVAQR----REERKARLQAHFTQ 406
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS VS +V + S GY +V+F+ ++A A+ L
Sbjct: 35 LYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELL 94
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+ +R+ ++ + +S
Sbjct: 95 NFTPLNGKAIRIMVSHRDPSMRKSG 119
>gi|254576977|ref|XP_002494475.1| ZYRO0A02398p [Zygosaccharomyces rouxii]
gi|238937364|emb|CAR25542.1| ZYRO0A02398p [Zygosaccharomyces rouxii]
Length = 410
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL S + ++ F G + +V+++ K N+AFV +A A+
Sbjct: 56 RVLYVGNLDKSITEEVLRQYFQVGGQISNVKVMIDKNNARANYAFVEYFKSHDANIALQT 115
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ ++R+ +A + ++ P E + L+V +LS V L F +
Sbjct: 116 LNGKQIENNVVRINWAFQSQQALPD--------ENTYNLFVGDLSVDVDDETLCNAFRSF 167
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
+ + V+++ G S GYGFVSF +E+A+ A+ S+ +EL GRPLR+ + K ++
Sbjct: 168 PSFIQGHVMWDMQTGGSRGYGFVSFGDQEQAQLAMDSMQSQELNGRPLRINWASKRENHH 227
Query: 259 ESNK 262
N+
Sbjct: 228 NGNR 231
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 165 SASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+A+ RET + LYV NL + LR++F + KV+ + N R A Y FV +
Sbjct: 45 NATKGGRETSDRVLYVGNLDKSITEEVLRQYFQVGGQISNVKVMIDKNNAR-ANYAFVEY 103
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
+A A+ +L+GK++ +R+ +
Sbjct: 104 FKSHDANIALQTLNGKQIENNVVRINW 130
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF P + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPA---LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 310 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 254 NDD 256
++
Sbjct: 368 KEE 370
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG--- 212
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 213 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 271
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 272 ELKRKFEQMKQDR 284
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|366990603|ref|XP_003675069.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
gi|342300933|emb|CCC68698.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
Q ++ R LYV NL S + +K F G + DV+I+ K N N+AF+
Sbjct: 75 QGGRETSDRVLYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDKKNNNVNYAFIEYLKSH 134
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
+A A+ + ++ G+ +R+ +A F+ + S + L+V +L+ V
Sbjct: 135 DANVALQTLNGIQIEGKTVRINWA--FQSQQTTNS------DDTFNLFVGDLNVDVDDET 186
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L F + V + V+++ GRS GYGFVSFA +E+A+ A++ + G + GR +R+ +
Sbjct: 187 LSHAFDQFPSYVQAHVMWDMQTGRSRGYGFVSFADQEQAQEAMNVMQGMPINGRAVRINW 246
Query: 251 GQK 253
K
Sbjct: 247 ATK 249
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF P + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPA---LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 310 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 254 NDD 256
++
Sbjct: 368 KEE 370
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG--- 212
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 213 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 271
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 272 ELKRKFEQMKQDR 284
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
P+ A+ AV + + +EV+ G+ + V E +KF++ + +R + R
Sbjct: 239 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLS----RYQ 294
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR F+ S+KV+ E +GRS G+GFV F+ EEA A+
Sbjct: 295 GVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME--DGRSKGFGFVCFSAPEEATKAV 352
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ ++G+ ++ +PL + Q+ +D
Sbjct: 353 TEMNGRIIVTKPLYVALAQRKED 375
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + + +FA G + V+++ G+++ F FV+ S E+AQAAV+ +
Sbjct: 227 IYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMN 286
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ-RSASAPARETQH------KLYVSNLSWKVRSTHLRE 193
++++G+ I V A+K ++ + + + ++ QH LY+ NL + HLR+
Sbjct: 287 GKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLRK 346
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E+ GRS G+GFV F++ ++A A ++GK + +PL + Q+
Sbjct: 347 EFSPFGTITSAKVMMEN--GRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQR 404
Query: 254 NDD 256
++
Sbjct: 405 KEE 407
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 17/253 (6%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK---- 80
I++ S + SL Y NF R V +T+ ++ P + +Q+ +RK
Sbjct: 74 IRVCRDSVTQHSLGYAYVNFQHRAHAEWVLATMNLDVIKGNPIRIMWSQRDPGQRKRGVG 133
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V NL S + + F+ G ++ ++I + G ++ + FV + E A A+ +
Sbjct: 134 NVFVKNLEKSIDNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKM 192
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + F +FK R + S + +Y+ N + L E F A +
Sbjct: 193 NGMLLNNLKV---FVGRFKSRRERESELGVKAKDYTNIYIKNFGENMDDQRLTEIF-AKY 248
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V + GRS G+GFVSF + E+A+AA+ ++GK+L G+ + + QK + +
Sbjct: 249 GPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQT 308
Query: 259 ESNKEEEDVSEDQ 271
E + E + ++Q
Sbjct: 309 ELKRHFEQIKQNQ 321
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS +S +V +S S GY +V+F + AE ++++
Sbjct: 47 LYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLATM 106
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + G P+R+ + Q++
Sbjct: 107 NLDVIKGNPIRIMWSQRD 124
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 243
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+SG+ I +VE + K+ Q +R LY+ NL + LR+
Sbjct: 244 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 303
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 304 EFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 361
Query: 254 NDD 256
++
Sbjct: 362 KEE 364
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 150
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +L+E FS F
Sbjct: 151 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFS-QF 205
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 206 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 259
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 64 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 115 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 157
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSG 88
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + +
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAE 369
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E AQ A++ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKSRR-EREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V G S G+GFV+F EEA+ A+ +++G+E+ GR L + QK
Sbjct: 215 GKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ ++ + R LYV NL S +++ F+P G + +++ +GG ++ F FV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVC 339
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158
+SPEEA AV + + + V + + V A+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAEGRK 372
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF P + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPA---LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 310 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 254 NDD 256
++
Sbjct: 368 KEE 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L++ F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG--- 212
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 213 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 271
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 272 ELKRKFEQMKQDR 284
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
R+ LYV LP S + + F+ G V V+I+ K + N+AFV A AA+
Sbjct: 43 RKVLYVGGLPKSINEDALNEKFSASGPVFSVKILNDKNKQGFNYAFVEFVDEAGAAAALQ 102
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+F+ ++++ +A + +++ P + ++V +LS +V L +FFSA
Sbjct: 103 EFNGSSFENSMLKINYAYQSSTFNATQNSDDPT----YNIFVGDLSPEVDDESLHKFFSA 158
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ + V+++ RS GYGFV+FA +AE A+S+++GK L GR +R +
Sbjct: 159 FESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKVLNGRAIRCNW 211
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 52/263 (19%)
Query: 37 SNSTPSLSYNFPTRNLCL--QVCSTLQDTTVETKPEQTQKQ-NIRRK---LYVFNLPWSF 90
SN++ S+S + T + CS + E +P +T+ ++ + L+V NLP+
Sbjct: 235 SNNSDSISPSLKTHHAVYPNDDCS---GHSTEVQPHKTETNAGLKHQCTTLFVGNLPFII 291
Query: 91 SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150
+ ++K+LF G V I G++R F VTM +PE+A A+ F+ +SGR +
Sbjct: 292 TWQDLKDLFRQAGDVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQMFNRYILSGRQLE 351
Query: 151 VEFAK-------------------KFKKPRP--------------------QRSASAPAR 171
V + + P P RS + +
Sbjct: 352 VREDRHVFKASKEGEHHEHSHRTTRLDSPAPLTQYGGQHDTGHIRHEHGYGNRSENYAMK 411
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+ L+V NL + V L++ F + P +++V S+ GRS G+GFV+ AT+E+A
Sbjct: 412 NSGITLFVGNLVYSVIWQELKDLFRSVGIPTKAEIV-TSSSGRSRGFGFVTMATQEDANK 470
Query: 232 AISSLDGKELMGRPLRL---KFG 251
AI L+G E GR + + KFG
Sbjct: 471 AIKELNGTEFRGRKIEVRLDKFG 493
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL +S E+K+LF G EI+ G++R F FVTMA+ E+A A+ + +
Sbjct: 417 LFVGNLVYSVIWQELKDLFRSVGIPTKAEIVTSSSGRSRGFGFVTMATQEDANKAIKELN 476
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E GR I V + K S P ++ V NL + +R L++ F
Sbjct: 477 GTEFRGRKIEV----RLDKFGSHESRGIPEALQGTQVLVGNLPFHMRWQDLKDIFRCVAE 532
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
P + V + GRS G G V F T+E+A A+ SL+ + GR + ++
Sbjct: 533 PQLANVRIDPETGRSQGVGTVRFQTEEDATRAL-SLNETVIAGRSIWVQI 581
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R++++ NLP++ ++K++F V V+++ H G++R F V +PE AQ+ + Q
Sbjct: 19 RQVFIGNLPFTMQSKDLKDVFNKTAGVTSVKVMSHGNGRSRGFGLVYCDTPEIAQSIITQ 78
Query: 139 FDTQEVSGRIIRVEFAK 155
F E+ GR I V +
Sbjct: 79 FQGLELKGRQIEVRIDR 95
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++++ NL + ++S L++ F+ S KV+ N GRS G+G V T E A++ I+
Sbjct: 20 QVFIGNLPFTMQSKDLKDVFNKTAGVTSVKVMSHGN-GRSRGFGLVYCDTPEIAQSIITQ 78
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEEED 266
G EL GR + ++ + N E+ D
Sbjct: 79 FQGLELKGRQIEVRIDRVNRSNIGHGSEQHD 109
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + + LF+ GTV V +++ G++R F FV PE A+ AV+
Sbjct: 202 VYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLH 261
Query: 141 TQEVS------GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
++V G+ ++ + ++ K + + + A + LYV NLS + T LRE
Sbjct: 262 GRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLREI 321
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F VS+KV+ N GRS G+GFV F+ +EE++ A L+G + G+ L ++ ++
Sbjct: 322 FGRYGQIVSAKVMRHEN-GRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAERK 380
Query: 255 DD 256
+D
Sbjct: 381 ED 382
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S + + ++ +F P G ++ ++++ + G+++ F FV + + A A +
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVE-ENGQSKGFGFVQFETEQSAVTARSALH 170
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
V G+ + F KF + +R A A + + +YV NL + L FS +
Sbjct: 171 GSMVDGKKL---FVAKFIN-KNERVAMAGNKGFTN-VYVKNLIENITEDILHRLFS-QYG 224
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
VSS VV GRS G+GFV+F E A+ A+ SL G+++ + L + K D+ E
Sbjct: 225 TVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREM 284
Query: 261 NKEE 264
K +
Sbjct: 285 LKHK 288
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E Q ++ LYV +L + ++ + F+ V+ V + ++ GK+ +A++ S
Sbjct: 12 ENHQHSSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDS 71
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
P A A+ + + ++ G+ +R+ ++ QR S R LYV NL + S
Sbjct: 72 PFSASNAMARLNHTDLKGKAMRIMWS--------QRDLSYRRRTGFGNLYVKNLDISITS 123
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ L F+ +S KVV E+ G+S G+GFV F T++ A A S+L G + G+ L +
Sbjct: 124 SGLERMFNPFGVILSCKVVEEN--GQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFV 181
Query: 249 -KFGQKNDDVS 258
KF KN+ V+
Sbjct: 182 AKFINKNERVA 192
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 74 KQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEA 132
K N+R LYV NL S + ++ +F G +V ++++H+ G+++ F FV ++ EE+
Sbjct: 296 KSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREES 355
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
+ A + V G+++ V A++ K+ R +R
Sbjct: 356 KQAKRYLNGFSVDGKLLVVRVAER-KEDRLKR 386
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ +++ E + LFAP G + + + K + GK++ F FV + A AV + +
Sbjct: 232 IYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELN 291
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K KK A+ L+V NL + S L E
Sbjct: 292 DKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEE 351
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V + G+S G+GFV F T EEA AI+ ++ + + +PL + Q+
Sbjct: 352 EFKP-FGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQR 410
Query: 254 ND 255
D
Sbjct: 411 KD 412
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 63 TTVETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKN 118
TT ++ EQ + LYV L S + A + +F+P G V + + + K+
Sbjct: 30 TTEQSAEEQGDSSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKS 89
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
+A+V E+ + A+ + + + GR R+ +++ + P +RS ++
Sbjct: 90 LGYAYVNYHKFEDGEKAIEELNYTPIEGRPCRIMWSQ--RDPSARRSGDG-------NIF 140
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + + L + FSA F + S V G+S +GFV + T E AEAAI +++G
Sbjct: 141 IKNLHPAIDNKALHDTFSA-FGKILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNG 199
Query: 239 KELMGR 244
L R
Sbjct: 200 MLLNDR 205
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++ S+ E LYV L+ V L E FS S +V ++ +S GY +V+
Sbjct: 37 EQGDSSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVN 96
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ E+ E AI L+ + GRP R+ + Q++
Sbjct: 97 YHKFEDGEKAIEELNYTPIEGRPCRIMWSQRD 128
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ + G+++ F FV + E A+AA+ +
Sbjct: 139 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVN 198
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F K + + S + +YV N+ + F A +
Sbjct: 199 GMLLNDREV---FVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLF-APYG 254
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++S + + +G+S G+GFV+F + A A+ L+ KE+ G+ + + QK + E
Sbjct: 255 KITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKRERMEE 314
Query: 261 NKEE 264
K++
Sbjct: 315 LKKQ 318
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + L +
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLWK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH---KGGKNRNFAFVTMASPEEAQAAVN 137
LYV +L + A + F+P G ++ + + + +G + N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRG--SSNYAYVNFQHPKDAEHALH 70
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + G+ +R+ ++ QR S R + ++V NL + + L + SA
Sbjct: 71 TMNFDVIKGKPLRIMWS--------QRDPSLRKRGVGN-IFVKNLDKSINNKALYDTVSA 121
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALHTM 72
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + G+PLR+ + Q++
Sbjct: 73 NFDVIKGKPLRIMWSQRD 90
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F G + V+++ GK++ F FV+ E+AQ AV+ +
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMF-GKY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V + G+S G+GFVSF E+A+ A+ ++GK++ G+ + + QK
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQK 268
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 25/190 (13%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ +K+ F GTV+D + G++R F +V A+ EA A +
Sbjct: 396 LWVGQLSWNVDNDWLKSEFEQYGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRASKEA 455
Query: 140 DTQEVSGRIIRVEF-------------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKV 186
+E+ GR +RV+ AK FK R SAP+ + L++ L+W +
Sbjct: 456 HGKELDGRALRVDLQPARGPQDRAESRAKHFKDER-----SAPS----NTLFIGGLAWAL 506
Query: 187 RSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ F A F V+ ++ E + GR G+G+V F +++ A A+ +++G+ L GRP
Sbjct: 507 TEDDIWNAF-AEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETMNGQALGGRP 565
Query: 246 LRLKFGQKND 255
+R+ F K D
Sbjct: 566 IRIDFAGKRD 575
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL ++ LF+ G + V++++ G +R F FV EEAQ AV +
Sbjct: 193 VYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 141 TQEVSGRIIRVEFAKKFK------KPRPQRSASAPARETQH----KLYVSNLSWKVRSTH 190
+EV G+++ V A+K+ K + Q+ H LYV NL + +
Sbjct: 253 GKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSIDNER 312
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G L +PL +
Sbjct: 313 LRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLYVAL 370
Query: 251 GQKNDD 256
Q+ D+
Sbjct: 371 AQRKDE 376
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NIFIKNLEESIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + + R G+GFV F T+E A+ AIS+++G L R
Sbjct: 124 NILSCKVVCDDHGSR--GFGFVHFETREAAQQAISTMNGMLLNNR 166
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + L +
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLWK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH---KGGKNRNFAFVTMASPEEAQAAVN 137
LYV +L + A + F+P G ++ + + + +G + N+A+V P++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRG--SSNYAYVNFQHPKDAEHALH 70
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + G+ +R+ ++ QR S R + ++V NL + + L + SA
Sbjct: 71 TMNFDVIKGKPLRIMWS--------QRDPSLRKRGVGN-IFVKNLDKSINNKALYDTVSA 121
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALHTM 72
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + G+PLR+ + Q++
Sbjct: 73 NFDVIKGKPLRIMWSQRD 90
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F G + I+ GK+R F F+ SP++A AV + +
Sbjct: 219 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 278
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + L E
Sbjct: 279 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 338
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS N+ ++S + G S G GFV+F+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 339 LFS-NYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 397
Query: 254 NDD 256
+D
Sbjct: 398 KED 400
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ + G+++ F FV E AQ+A+ +
Sbjct: 128 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN 187
Query: 141 TQEVSGRIIRVE-FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q ++ + + ++V NLS L + F A
Sbjct: 188 GMLINDKPVYVGPFLRK------QERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYG 241
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N ++S V+ +G+S +GF++F + ++A A+ L+GK++
Sbjct: 242 N-ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKI 282
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF G ++ V++++ G +R F FV EEAQ AV+ +
Sbjct: 193 IYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSG+ + V A+K K+ Q R LYV NL + LR
Sbjct: 253 GKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEKLRT 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G + +PL + Q+
Sbjct: 313 VFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + G+ IR+ ++++ P ++S +++ NL + S L + FS
Sbjct: 73 NFEVIKGQPIRIMWSQR--DPGLRKSGVG-------NVFIKNLEDSIDSKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV +E S G+GFV F T E A+ AIS+++G L R
Sbjct: 124 NILSCKVA--CDEHGSRGFGFVHFETNEAAQQAISTMNGMLLNDR 166
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F G + ++ GK+R F F+ +P+ A AV + +
Sbjct: 215 VFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELN 274
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + L E
Sbjct: 275 GKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCE 334
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS NF ++S V G S G GFV+F+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 335 LFS-NFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 393
Query: 254 NDD 256
+D
Sbjct: 394 KED 396
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + S +++ LF+ G VV V + + ++ +A+V ++P +A A+
Sbjct: 36 LYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVL 95
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IRV ++ + P +RS SA +++ NL + + L E FS+
Sbjct: 96 NFAALNNKPIRVMYSNR--DPSSRRSGSA-------NIFIKNLDKTIDNKTLHETFSSFG 146
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+S KV + G+S G+GFV + +E A+ AI SL+G + +P+
Sbjct: 147 TILSCKVAVDE-AGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPV 192
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + F+ GT++ ++ + G+++ F FV E AQ A+ +
Sbjct: 124 IFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLN 183
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F F R Q + + + ++V NLS L + F +
Sbjct: 184 GMLINDKPV---FVGPF--VRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIF-GEYG 237
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +G+S +GF++F + A A+ L+GK++
Sbjct: 238 DITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKI 278
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS VS +V + RS GY +V+++ +A A+ L
Sbjct: 36 LYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVL 95
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L +P+R+ + ++
Sbjct: 96 NFAALNNKPIRVMYSNRD 113
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%)
Query: 67 TKPEQTQKQNIRRK----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFA 122
T+ E+ +K R + +Y+ N + ++ +F G V V +++ + G +R F
Sbjct: 18 TRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFG 77
Query: 123 FVTMASPEEAQAAVNQFDTQEVSG-----RIIRVEFAKKFKKPRPQRSASAPARETQHK- 176
FV S EEAQAAV + QE+ G I+ V A+K K+ R Q ++ Q +
Sbjct: 78 FVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQK-KQERQQELRGQYEQQKQERI 136
Query: 177 -------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE---SNEGRSAGYGFVSFATK 226
LYV NL V LRE F+ S+K++ + S RS G+GFV F++
Sbjct: 137 QRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSP 196
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
EEA A++ ++G+ + +PL + Q+ +D
Sbjct: 197 EEATKAVTEMNGRIVGTKPLYVALAQRRED 226
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL + E +LF G + + ++K + K R F FV A+ E AQ AV++ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+E G+ + V A+K + +R R Q K L++ NL +V
Sbjct: 323 DKEYKGKKLYVGRAQK----KHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+ FSA F ++S + +G+S G+GFV + T EEA A++ ++ + L G+PL +
Sbjct: 379 RLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 250 FGQKND 255
Q+ +
Sbjct: 438 LAQRKE 443
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + LF G V + + + ++ +A+V + E+ + A+++
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++++ R + + +++ NL + + L + FSA
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGN---------VFIKNLDPAIDNKALHDTFSAFG 192
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + G + GYGFV F + E A AAI ++G L
Sbjct: 193 KILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL +K F+ GT+ +I+ + GK++ F FV +PEEA AV + +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ ++G+ + V A++ + R Q A AR
Sbjct: 426 QRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 456
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSF 223
S +AP T LYV L V L E F++ PV+S +V ++ RS GY +V+F
Sbjct: 73 SGTAP---TSASLYVGELDPSVTEAMLFELFNS-IGPVASIRVCRDAVTRRSLGYAYVNF 128
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
E+ E A+ L+ + GRP R+ + Q++
Sbjct: 129 HNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N + ++K +F GT+ +++ GK+R F FV P+ A+ AV + +
Sbjct: 173 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 232
Query: 141 TQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
+EV+ G+ + V E +KF++ + +R R LYV NL +
Sbjct: 233 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLN----RYQGVNLYVKNLDDSIDD 288
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A++ ++G+ ++ +PL +
Sbjct: 289 ERLRKEFAPFGTITSAKVMME--EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 346
Query: 249 KFGQKNDD 256
Q+ +D
Sbjct: 347 ALAQRKED 354
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + G S GYGFV F T+E A +I ++G L G+ L
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKL 169
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ N P ++K +F G + ++K GK++ F FV P+ A+ AV
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 141 TQEVSGRII-----------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+ GR + + E ++ +K R +R +S LYV NL +
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSY---MLNVNLYVKNLDDNIDDK 310
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L E FS + + S+KV+ ++N RS G+GFV FA E+A A++ ++G + +PL +
Sbjct: 311 RLEEAFSVHGSITSAKVMKDANN-RSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 370 LAQRKED 376
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 104/196 (53%), Gaps = 10/196 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S E+ + F+ G ++ +I+ + G+++ + FV E A+ A+ + +
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
+ R++ + KF P+ +R + A R+ + + LY+ N + + L+E F+ F
Sbjct: 163 NMIIRDRVV---YVGKFI-PKTERKSQA--RKVKFNNLYIKNFPPETDNEKLKEMFN-EF 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V + +EG+S G+GFV F + AE A+ ++ GKE+ GR L Q+ ++ E
Sbjct: 216 GEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQE 275
Query: 260 SNKE--EEDVSEDQSA 273
K+ E+ +E QS+
Sbjct: 276 ELKQRLEKQRAERQSS 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V + L+ FS +S++V + S GYG+V+F + AE A+ L
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVL 74
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + LMGRP+R+ + Q++ + +S K
Sbjct: 75 NYESLMGRPIRIMWSQRDPSLRKSGK 100
>gi|449268380|gb|EMC79248.1| Nucleolin [Columba livia]
Length = 648
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 98/182 (53%), Gaps = 8/182 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+ + E+K++F +++ I+ +K G ++ A++ +
Sbjct: 314 KENKKERDARTLFVKNLPYRLTEDEMKDVFE---NALEIRIVMNKEGNSKGMAYIEFKTE 370
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRS 188
EA A+ + E+ GR + ++F + Q+ S E + K L V+NL++
Sbjct: 371 AEANKALEEKQGTEIDGRAMVIDFTGEKSHQEHQKVFSTGGGERESKTLIVNNLAYAASE 430
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E F SS + ++N+GR GY FV F T E+A+ A++S + E+ GR +RL
Sbjct: 431 EALQELFKK----ASSIKMPQNNQGRPKGYAFVEFPTTEDAKEALNSCNNTEIEGRAIRL 486
Query: 249 KF 250
+F
Sbjct: 487 EF 488
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 92/172 (53%), Gaps = 7/172 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L V NL ++ S ++ LF ++ ++ ++ G+ + +AFV + E+A+ A+N +
Sbjct: 419 LIVNNLAYAASEEALQELFKKASSI---KMPQNNQGRPKGYAFVEFPTTEDAKEALNSCN 475
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E+ GR IR+EF+ + + + + + L+V LS LRE F +
Sbjct: 476 NTEIEGRAIRLEFSSQGWQ-KGNMNVRGGFNQQSKTLFVRGLSEDTTEETLRESFEGS-- 532
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+S+++V + + G S G+GFV F++ E+A+AA +++ E+ G + L F +
Sbjct: 533 -ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVILDFAK 583
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 177 LYVSNL----SWKVRSTHLREFFSA-NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
++V NL ++ T ++EFF N + ++ G S +G+V F++ EE +
Sbjct: 235 VFVGNLVSTKDFEELKTGIKEFFGKKNIEALDVRI------GASKRFGYVDFSSAEELDK 288
Query: 232 AISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
A+ L+GK+LMG ++L+ + + + E+ KE +
Sbjct: 289 ALQ-LNGKKLMGLEVKLEKAKSKETIKENKKERD 321
>gi|428170688|gb|EKX39611.1| hypothetical protein GUITHDRAFT_160003 [Guillardia theta CCMP2712]
Length = 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKN-LFAPCGT--VVDVEIIKHKGGKNRNFAFVTM 126
E T+ + ++YV NL W ++K+ + P VV +I+ GG+++ A V
Sbjct: 3 EDTRGPGLGCRVYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEY 62
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKV 186
ASPE+AQ A+ + + E+ GR+I F ++ ++ ++YV NLSW+
Sbjct: 63 ASPEDAQRAIAELNDTEMMGRLI---FVREDRE-----GFKGGMGTGGRRVYVGNLSWEC 114
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ L++ N + + V +GRS G G V F++ EEA AI L+ ELMGR +
Sbjct: 115 KWQDLKDHMRTAGNVLHAD-VMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMI 173
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R++YV NL W ++K+ G V+ +++ G+++ V +SPEEA A+ +
Sbjct: 103 RRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQE 162
Query: 139 FDTQEVSGRIIRVEFAKKFK 158
+ E+ GR+I V ++ +
Sbjct: 163 LNETELMGRMIFVREDREMR 182
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ GK++ F FV+ EEA AV + +
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++++G+++ V A+K + +R A R Q K LY+ NL +
Sbjct: 253 GKDINGKMLFVGRAQK----KAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + G+S G+GFVSF EEA A+ ++GK++ G+ L + QK
Sbjct: 216 KTLSVKVMTDPT-GKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQK 268
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 95 IKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
+K+LF P + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I V A
Sbjct: 6 LKDLFRPA---LSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 62
Query: 155 KKFKKPRP-------QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVV 207
+K +P+ Q R LYV NL + HLR+ FS S+KV+
Sbjct: 63 QKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVM 122
Query: 208 FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E GRS G+GFV F++ EEA A+ ++G+ + +PL + Q
Sbjct: 123 MEG--GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQ 165
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ ++ I R LYV NL ++ F+P GT+ +++ +GG+++ F FV
Sbjct: 77 EQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVM-MEGGRSKGFGFVC 135
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
+SPEEA AV + + + V+ + + V A+
Sbjct: 136 FSSPEEATKAVKEMNGRTVATKPLYVALAQ 165
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F P S V G+S G+ FVSF E+A+ A+ ++GKEL G+ + + QK
Sbjct: 10 FRPALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 64
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ N P ++K +F G + ++K GK++ F FV P+ A+ AV
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 141 TQEVSGRII-----------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+ GR + + E ++ +K R +R +S LYV NL +
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSY---MLNVNLYVKNLDDNIDDK 310
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L E FS + + S+KV+ ++N RS G+GFV FA E+A A++ ++G + +PL +
Sbjct: 311 RLEEAFSVHGSITSAKVMKDANN-RSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 370 LAQRKED 376
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 104/196 (53%), Gaps = 10/196 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S E+ + F+ G ++ +I+ + G+++ + FV E A+ A+ + +
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
+ R++ + KF P+ +R + A R+ + + LY+ N + + L+E F+ F
Sbjct: 163 NMIIRDRVV---YVGKFI-PKTERKSQA--RKVKFNNLYIKNFPPETDNEKLKEMFN-EF 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V + +EG+S G+GFV F + AE A+ ++ GKE+ GR L Q+ ++ E
Sbjct: 216 GEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQE 275
Query: 260 SNKE--EEDVSEDQSA 273
K+ E+ +E QS+
Sbjct: 276 ELKQRLEKQRAERQSS 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V + L+ FS +S++V + S GYG+V+F + AE A+ L
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVL 74
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + LMGRP+R+ + Q++ + +S K
Sbjct: 75 NYESLMGRPIRIMWSQRDPSLRKSGK 100
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K F+ G + V+++ GK++ F FV+ E+A AV+ +
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMN 258
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++V+G+I+ +VE + K+ Q +R LY+ NL + LR+
Sbjct: 259 GKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 318
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 319 EFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 376
Query: 254 NDD 256
++
Sbjct: 377 KEE 379
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 165
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 166 GMLLNDRKV---FVGRFKC-RREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYG 221
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 222 KTLSVKVMTDPS-GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQK 274
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P + + F
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADGEYGNLLF 72
Query: 140 DTQEVSGRIIRVEFAKKF-------KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
D +V V K F + P ++S +++ NL + + L
Sbjct: 73 DRMDV---CFHVAGGKAFTLLWFSERDPSLRKSGVG-------NVFIKNLDKSIDNKALY 122
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 123 DTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 172
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G+++ V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDPS-GKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQK 268
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K F+ G + V+++ GK++ F FV+ E+A AV+ +
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++V+G+I+ V A+K + +R A R Q K LY+ NL +
Sbjct: 253 GKDVNGKIMFVGRAQK----KVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKC-RREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDPS-GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQK 268
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 189 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMN 248
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG++I V E +KF++ + +R +R LY+ NL +
Sbjct: 249 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 304
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + ++V+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 305 KLRKEFSPFGSITRAEVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 362
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 363 LAQRKEE 369
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 97 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 155
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS F
Sbjct: 156 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QF 210
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 211 GKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 264
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 132 AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
A+ A++ + + G+ IR+ ++++ P ++S +++ NL + + L
Sbjct: 61 AERALDTMNFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKAL 111
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ FSA N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 112 YDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 162
>gi|8163877|gb|AAF73892.1|AF224345_1 enhancer binding protein-1 [Entamoeba histolytica]
Length = 247
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 12/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK---HKGG--KNRNFAFVTMASPEEAQAA 135
L++ NLP++ + ++K +F+ G VV++ +IK KG KN AF+T+ + EE + A
Sbjct: 56 LFIKNLPFAITEEKLKEMFSKFG-VVEITLIKTHRKKGNVTKNNGIAFITVKTAEEQKKA 114
Query: 136 VNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ + D EV GR I V A KK + + + + P ++ ++V NL + + ++
Sbjct: 115 IAEMDNFEVEGRKITVAAAYKKVENKQTTKKTNEPKSLSETNVFVKNLPFTLTDEGFKKL 174
Query: 195 FSANFNPVSSKVVFESNE----GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
F ++ V + +V N+ RS GYGFV+F T E+ + AI+ +D E+ GR +
Sbjct: 175 FEK-YDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIAEMDNFEVEGRKI 229
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ N P ++K +F G + ++K GK++ F FV P+ A+ AV
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 141 TQEVSGRII-----------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+ GR + + E ++ +K R +R +S LYV NL +
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSY---MLNVNLYVKNLDDNIDDK 310
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L E FS + + S+KV+ ++N RS G+GFV FA E+A A++ ++G + +PL +
Sbjct: 311 RLEEAFSVHGSITSAKVMKDANN-RSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 370 LAQRKED 376
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 104/196 (53%), Gaps = 10/196 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S E+ + F+ G ++ +I+ + G+++ + FV E A+ A+ + +
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
+ R++ + KF P+ +R + A R+ + + LY+ N + + L+E F+ F
Sbjct: 163 NMIIRDRVV---YVGKFI-PKTERKSQA--RKVKFNNLYIKNFPPETDNEKLKEMFN-EF 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V + +EG+S G+GFV F + AE A+ ++ GKE+ GR L Q+ ++ E
Sbjct: 216 GEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQE 275
Query: 260 SNKE--EEDVSEDQSA 273
K+ E+ +E QS+
Sbjct: 276 ELKQRLEKQRAERQSS 291
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V + L+ FS +S++V + S GYG+V+F + AE A+ L
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVL 74
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + LMGRP+R+ + Q++ + +S K
Sbjct: 75 NYESLMGRPIRIMWSQRDPSLRKSGK 100
>gi|452986364|gb|EME86120.1| hypothetical protein MYCFIDRAFT_52503 [Pseudocercospora fijiensis
CIRAD86]
Length = 482
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 41 PSLSYNFP--TRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNL 98
PSL+ N P T L + + T+ + + + +R LYV L + +K +
Sbjct: 41 PSLAVNIPQNTNPLPQSMSGLMSPTSAGGQVRRAAPEPNKRALYVGGLDPRVTEDVLKQI 100
Query: 99 FAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G V V+II K K N+ FV P A+ A+ + + V + IRV +A +
Sbjct: 101 FETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAYQ 160
Query: 157 FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA 216
+A+ ++V +LS +V L + FSA N ++V+++ GRS
Sbjct: 161 ------SNTATKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGNVSEARVMWDMKTGRSR 214
Query: 217 GYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
GYGFV+F + EAE A+SS+DG+ L R +R + + S S ++
Sbjct: 215 GYGFVAFRDRGEAEKALSSMDGEWLGSRAIRCNWANQKGQPSFSQQQ 261
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + N+F+ G ++ I++ GK+R F FV SPE+A+ AV+ +
Sbjct: 201 LYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALN 260
Query: 141 TQEVSGR---------------IIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
++ R I++ E+ F + AS LYV NL+
Sbjct: 261 GYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKAS--------NLYVKNLALC 312
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ + L+E FS + VS+KV+ N G S G+GFV F++ EEA+ A+++L+G G+
Sbjct: 313 IDNDKLQELFSCSGKIVSAKVMRYDN-GASRGFGFVCFSSPEEAKKALNALNGAVFQGKS 371
Query: 246 LRLKFGQKNDD 256
L + Q D
Sbjct: 372 LYVAMAQCKRD 382
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF- 139
LYV NL S A +++LF+ GT++ ++++ G K++ + FV S + A AA
Sbjct: 109 LYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHG-KSKGYGFVQFDSEDSALAARTALH 167
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSAN 198
DT ++ F KK +R+ + E + LYV NLS + FSA
Sbjct: 168 DTMLKEKKLYVSRFVKK-----SERTTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSA- 221
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
F + S V+ + + G+S G+GFV F + E+A+ A+ +L+G +L R L
Sbjct: 222 FGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTL 269
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFVTMASPEEAQAAV 136
R LYV +L + ++ +F+ G + +V + + G++ + +V P +A A+
Sbjct: 18 RLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKAL 77
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ + + G+++R+ + ++ P ++S LYV NL + S L+ FS
Sbjct: 78 SNLNHTYLKGKLMRIMWCQR--NPCARKSGIG-------NLYVKNLDASIDSAGLQSLFS 128
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKND 255
+S KVV E G+S GYGFV F +++ A AA ++L L + L + +F +K++
Sbjct: 129 KFGTILSCKVVEE--HGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSE 186
Query: 256 DVSESNKEE 264
+ ++ +E
Sbjct: 187 RTTATSYDE 195
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
P+ A+ AV + + +++S G+ + V A+K K+ Q R L
Sbjct: 239 FEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNL 298
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A++ ++
Sbjct: 299 YVKNLDDTIDDERLRKEFTPFGTITSAKVMME--EGRSKGFGFVCFSQPEEATKAVTEMN 356
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 357 GRIVGSKPLYVALAQRKED 375
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ GK+R F FV+ E+A AV + +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E++G+ + V E +KF++ + +R +R LY+ NL +
Sbjct: 254 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 309
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 310 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 367
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 368 LAQRKEE 374
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 74 NFDVVKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 124
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 125 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 167
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 160
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 161 GMLLNDRKV---FVGRFKS-RKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYG 216
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + G+S G+GFVS+ E+A A+ ++G EL G+ + + QK
Sbjct: 217 KTLSVKVMTDPT-GKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQK 269
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSG 98
>gi|320580860|gb|EFW95082.1| poly(A+) RNA-binding protein, putative [Ogataea parapolymorpha
DL-1]
Length = 405
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NLP+ + ++K+LF G VV +++ + G++R V A+ + Q A+++FD
Sbjct: 71 IFVGNLPYHTTWYDLKDLFREVGEVVRADVVTSR-GRSRGMGTVEFANKDLVQEAISKFD 129
Query: 141 TQEVSGRIIRVEF----AKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFF 195
GR I V +K R +R +AP T+ +++++ NL + VR L++ F
Sbjct: 130 RTMYEGREIFVREDLPPPEKENTGREERRRNAPPPSTEGYEVFIGNLPFSVRWQDLKDLF 189
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ P+ V E + GRS G+G V F E+A+ AI+ +G ++ GR + ++ G++
Sbjct: 190 KS-CGPIIRADVREDHRGRSKGFGTVIFENSEDADRAIADFNGYDMDGRRIEVRLGKQ 246
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 133/309 (43%), Gaps = 41/309 (13%)
Query: 6 AAATSIFLTNHPF-----SFSCLFPKLPHCIK---LLHSSNSTPSLSYNFPTRNLCLQVC 57
A SIF+ N P+ LF ++ ++ + S + F ++L +
Sbjct: 66 AYENSIFVGNLPYHTTWYDLKDLFREVGEVVRADVVTSRGRSRGMGTVEFANKDLVQEAI 125
Query: 58 STLQDTTVETKP------------EQTQKQNIRR----------KLYVFNLPWSFSVAEI 95
S T E + E T ++ RR ++++ NLP+S ++
Sbjct: 126 SKFDRTMYEGREIFVREDLPPPEKENTGREERRRNAPPPSTEGYEVFIGNLPFSVRWQDL 185
Query: 96 KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
K+LF CG ++ ++ + G+++ F V + E+A A+ F+ ++ GR I V K
Sbjct: 186 KDLFKSCGPIIRADVREDHRGRSKGFGTVIFENSEDADRAIADFNGYDMDGRRIEVRLGK 245
Query: 156 KFKK----PRPQRSASAPA-----RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
+F K P R++ A E ++ NL W+ T L + F + + +++
Sbjct: 246 QFNKEPQGPTESRNSEFVAGVVGQGEPNDTIFADNLPWETSETDLFDLFGSIASVKRAEL 305
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV-SESNKEEE 265
F+ + R AG V F + A AA++ LD E R L + F ++ D V SE N + E
Sbjct: 306 QFD-DLNRPAGTAVVQFQELDGAIAAVNQLDNYEYGRRRLHVSFAKRGDAVSSEQNMDVE 364
Query: 266 DVSEDQSAE 274
S Q +E
Sbjct: 365 AESAQQPSE 373
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
F + + PR S S R ++ ++V NL + L++ F V + VV ++
Sbjct: 49 FESRGRGPRENESKSN--RAYENSIFVGNLPYHTTWYDLKDLFREVGEVVRADVV--TSR 104
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
GRS G G V FA K+ + AIS D GR +
Sbjct: 105 GRSRGMGTVEFANKDLVQEAISKFDRTMYEGREI 138
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 65 VETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
+ K Q+Q R + +YV NL + AE + +F G + + GK+R F
Sbjct: 317 ISRKERQSQIDEARAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGF 376
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK--- 176
FV + EEA+ AVN+ +E+ G+++ V A+K + + + RS A +E Q+K
Sbjct: 377 GFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAG 436
Query: 177 --LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
LYV NL V LR F A F ++S V + S G+GFV F+T +EA A++
Sbjct: 437 VNLYVKNLDDDVDDDKLRAEFEA-FGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVT 495
Query: 235 SLDGKELMGRPLRLKFGQKND 255
++ K + +PL + Q+ D
Sbjct: 496 EMNNKMIGTKPLYVSLAQRRD 516
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + FA G V+ ++ + GK+R + +V + E A+AA+ +
Sbjct: 243 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVN 302
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F + ++S AR +YV NL + R F F
Sbjct: 303 RMLLNDKQV---FVGHHISRKERQSQIDEARAQFTNIYVKNLDTDITEAEFRVMFE-EFG 358
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
++S V+ NEG+S G+GFV++ EEAE A++ + KE+ G+ L + QK +
Sbjct: 359 NITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSE 414
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E ++ Q + LYV NL +++ F GT+ ++++++ ++ F FV
Sbjct: 424 EAAKQERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVC 483
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ 163
++P+EA AV + + + + + + V A++ R Q
Sbjct: 484 FSTPDEATKAVTEMNNKMIGTKPLYVSLAQRRDVRRQQ 521
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F G + I+ GK+R F F+ SP++A AV + +
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS N+ ++S + G S G GFV+F+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 340 LFS-NYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 398
Query: 254 NDD 256
+D
Sbjct: 399 KED 401
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L S + +++ LF+ G V+ V + + + + +A+V +P +A A+
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IRV ++ + P +RS SA +++ NL + L + FSA
Sbjct: 101 NFAPLNGKPIRVMYSN--RDPSSRRSGSA-------NIFIKNLDKAIDHKTLHDTFSAFG 151
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + G+S G+GFV + E A++AI SL+G + +P+
Sbjct: 152 NILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPV 197
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ + G+++ F FV E AQ+A+ +
Sbjct: 129 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN 188
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q ++ + + ++V NLS L + F A
Sbjct: 189 GMLINDKPVYVGPFLRK------QERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYG 242
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N ++S V+ +G+S +GF++F + ++A A+ L+GK++
Sbjct: 243 N-ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKI 283
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS +S +V + + RS GY +V+F +A A+ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L G+P+R+ + ++
Sbjct: 101 NFAPLNGKPIRVMYSNRD 118
>gi|356560231|ref|XP_003548397.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 271
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 62 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN--R 119
D +E + E+ ++ ++YV NLP S A + ++F P GT++ +E++ N +
Sbjct: 81 DDVLEDEEEREKRLGKACEVYVCNLPRSCDAAYLLDMFRPYGTILSIEVVCRNAENNESK 140
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP--QRSASAPAR----ET 173
++VT+ S A+ AV D +V G +RV F+ + R + S+ R E+
Sbjct: 141 GCSYVTLGSIHSARNAVAALDGSDVGGCELRVRFSIEMNSRRRSFNKMNSSTKRISYYES 200
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
HKLYV NL+ VR LR+ F N VS++V+ + +G S Y F+SF ++E
Sbjct: 201 PHKLYVGNLAKTVRPEQLRDLFCRFGNIVSARVLRDFKQGNSRVYAFLSFQSEE 254
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 17/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
+ E A+AAV + +++ G+ + V E +KF++ + +R S
Sbjct: 230 YETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGV-- 287
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ FS + ++S V EGRS G+GFV F + EA A+
Sbjct: 288 --NLYVKNLDDSIDDERLRKEFSL-YGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAV 344
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ L+G+ + +PL + Q+ ++
Sbjct: 345 TELNGRVIGSKPLYVALAQRKEE 367
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLIRDKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + +G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVATDE-KGTSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLIRDKPIRIMWSQRDPSLRRSG 88
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G+++ V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ +EA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDPS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + ++ +F G + I+ GK+R F F+ SP++A AV + +
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++ + V A+K K+ Q A + LY+ NL + L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS N+ ++S + G S G GFV+F+T+EEA A++ ++GK + G+PL + F Q+
Sbjct: 340 LFS-NYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 398
Query: 254 NDD 256
+D
Sbjct: 399 KED 401
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L S + +++ LF+ G V+ V + + + + +A+V +P +A A+
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IRV ++ + P +RS SA +++ NL + L + FSA
Sbjct: 101 NFAPLNGKPIRVMYSN--RDPSSRRSGSA-------NIFIKNLDKAIDHKTLHDTFSAFG 151
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + G+S G+GFV + E A++AI SL+G + +P+
Sbjct: 152 NILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPV 197
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ + G+++ F FV E AQ+A+ +
Sbjct: 129 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN 188
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q ++ + + ++V NLS L + F A
Sbjct: 189 GMLINDKPVYVGPFLRK------QERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYG 242
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N ++S V+ +G+S +GF++F + ++A A+ L+GK++
Sbjct: 243 N-ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKI 283
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS +S +V + + RS GY +V+F +A A+ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L G+P+R+ + ++
Sbjct: 101 NFAPLNGKPIRVMYSNRD 118
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP + E+K F G + ++K + G +R+F FV SPE A AV + +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRF----EKLQGSNLYLKNLDDSVNDE 342
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N S KV+ S +G S G+GFV+++ EEA A+ ++GK + +PL +
Sbjct: 343 KLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 401
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 402 LAQRKEE 408
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L S + + + +LF V ++ + + ++ +A+V A+PE+A A+ +
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ R IR+ + + P + S +++ NL + + L E FS+
Sbjct: 107 YAPIRDRPIRIMLSN--RDPSTRLSGKG-------NVFIKNLDASIDNKALYETFSSFGT 157
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + GRS GYGFV F +E A+AAI L+G L
Sbjct: 158 ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL 197
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 36 SSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEI 95
+S + SL+Y P R+ +++ + +D + + K N+ ++ NL S +
Sbjct: 98 ASRAMESLNYA-PIRDRPIRIMLSNRDPSTRL----SGKGNV----FIKNLDASIDNKAL 148
Query: 96 KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFA 154
F+ GT++ ++ G+++ + FV E AQAA+++ + ++ + + V F
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
++ + R + S + P+ +YV NL ++ L++ F + +SS VV + G
Sbjct: 209 RRQDRARSE-SGAVPSFTN---VYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGN 263
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
S +GFV+F + E A A+ ++G L L + QK +S++EEE
Sbjct: 264 SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK-----KSDREEE 309
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V +HL + F+ PV + V RS GY +V+FA E+A A+ SL
Sbjct: 47 LYVGDLDPSVNESHLLDLFN-QVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + RP+R+ ++ S K
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTRLSGK 131
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G+++ V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ +EA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDPS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP + E+K F G + ++K + G +R+F FV SPE A AV + +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRF----EKLQGSNLYLKNLDDSVNDE 342
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N S KV+ S +G S G+GFV+++ EEA A+ ++GK + +PL +
Sbjct: 343 KLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 401
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 402 LAQRKEE 408
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L S + + + +LF V ++ + + ++ +A+V A+PE+A A+ +
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ R IR+ + + P + S +++ NL + + L E FS+
Sbjct: 107 YAPIRDRPIRIMLSN--RDPSTRLSGKG-------NVFIKNLDASIDNKALYETFSSFGT 157
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + GRS GYGFV F +E A+AAI L+G L
Sbjct: 158 ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL 197
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 36 SSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEI 95
+S + SL+Y P R+ +++ + +D + + K N+ ++ NL S +
Sbjct: 98 ASRAMESLNYA-PIRDRPIRIMLSNRDPSTRL----SGKGNV----FIKNLDASIDNKAL 148
Query: 96 KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFA 154
F+ GT++ ++ G+++ + FV E AQAA+++ + ++ + + V F
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
++ + R + S + P+ +YV NL ++ L++ F + +SS VV + G
Sbjct: 209 RRQDRARSE-SGAVPSFTN---VYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGN 263
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
S +GFV+F + E A A+ ++G L L + QK +S++EEE
Sbjct: 264 SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK-----KSDREEE 309
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V +HL + F+ PV + V RS GY +V+FA E+A A+ SL
Sbjct: 47 LYVGDLDPSVNESHLLDLFN-QVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + RP+R+ ++ S K
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTRLSGK 131
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G+++ V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ +EA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDPS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|340914665|gb|EGS18006.1| hypothetical protein CTHT_0060190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 539
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 9/184 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ + F C +V ++ K + +R F +V SP+ A+ A N+
Sbjct: 307 LWVGNLGWAVDDKALYEEFENCEGIVSARVVTDKDSRRSRGFGYVDFTSPDAAEKAYNEK 366
Query: 140 DTQEVSGRIIRVEFAKK-FKKPRPQRSASAPARE-------TQHKLYVSNLSWKVRSTHL 191
+ + GR +R++FA K + P A+ AR+ L+V NLS+ +
Sbjct: 367 NGAHLQGREMRLDFASKPAEGNDPTTRAAERARKHGDVISPESDTLFVGNLSFNATEESV 426
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
EFF++ S ++ + GR G+ +V+F + E+A+ A + L+G L GRP+RL F
Sbjct: 427 SEFFNSVAAVQSLRIPTDQESGRPKGFAYVTFNSVEDAKTAFNQLNGSNLDGRPVRLDFA 486
Query: 252 QKND 255
+ D
Sbjct: 487 KPRD 490
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%)
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT 225
A+A E L+V NL W V L E F VS++VV + + RS G+G+V F +
Sbjct: 296 ANAQTSEKTATLWVGNLGWAVDDKALYEEFENCEGIVSARVVTDKDSRRSRGFGYVDFTS 355
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ AE A + +G L GR +RL F K
Sbjct: 356 PDAAEKAYNEKNGAHLQGREMRLDFASK 383
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP + E+K F G + ++K + G +R+F FV SPE A AV + +
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 301 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRF----EKLQGSNLYLKNLDDSVNDE 356
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N S KV+ S +G S G+GFV+++ EEA A+ ++GK + +PL +
Sbjct: 357 KLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 416 LAQRKEE 422
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L S + + + +LF V ++ + + ++ +A+V A+PE+A A+ +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 120
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ R IR+ + + P + S +++ NL + + L E FS+
Sbjct: 121 YAPIRDRPIRIMLSN--RDPSTRLSGKG-------NVFIKNLDASIDNKALYETFSSFGT 171
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + GRS GYGFV F +E A+AAI L+G L
Sbjct: 172 ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL 211
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 36 SSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEI 95
+S + SL+Y P R+ +++ + +D + + K N+ ++ NL S +
Sbjct: 112 ASRAMESLNYA-PIRDRPIRIMLSNRDPSTRL----SGKGNV----FIKNLDASIDNKAL 162
Query: 96 KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFA 154
F+ GT++ ++ G+++ + FV E AQAA+++ + ++ + + V F
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
++ + R + S + P+ +YV NL ++ L++ F + +SS VV + G
Sbjct: 223 RRQDRARSE-SGAVPSFTN---VYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGN 277
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
S +GFV+F + E A A+ ++G L L + QK +S++EEE
Sbjct: 278 SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK-----KSDREEE 323
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V +HL + F+ PV + V RS GY +V+FA E+A A+ SL
Sbjct: 61 LYVGDLDPSVNESHLLDLFN-QVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + RP+R+ ++ S K
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGK 145
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 17/166 (10%)
Query: 102 CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV---------- 151
G + V+++ +GGK++ F FV+ E+AQ AV++ +T+E++GR I V
Sbjct: 215 VGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQ 274
Query: 152 -EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
E +KF+ + +R + + LYV NL + L + FS S+KV+ E
Sbjct: 275 TELKRKFEMLKQERMS----KYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMME- 329
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
EGRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++
Sbjct: 330 -EGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEE 374
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ +++ + P +RS +++ NL + + L + FSA
Sbjct: 73 NFDVVKGKPIRIMWSQ--RDPSLRRSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSA--SAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
++ R + F +FK R +R A A ARE + +Y+ N + LRE+F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAEFGAKAREFTN-VYIKNFGDDMDDERLREYFEQY 214
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVSF E+A+ A+ ++ KEL GR + + QK
Sbjct: 215 VGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQK 269
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + + + F+P GT+ +++ + G++R F FV +SPEEA AV + +
Sbjct: 297 LYVKNLDDNINDERLWKEFSPFGTITSAKVMMEE-GRSRGFGFVCFSSPEEATKAVTEMN 355
Query: 141 TQEVSGRIIRVEFAKK 156
+ + + + V A++
Sbjct: 356 GRIIGSKPLYVALAQR 371
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRRSG 97
>gi|392569148|gb|EIW62322.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 556
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 6/183 (3%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ ++V L W+ + FA CG V+ + + GK+R F +V A+ E +AA+
Sbjct: 297 KSIFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEFATTEAVEAAL- 355
Query: 138 QFDTQEVSGRIIRVEFAKKFKK--PRPQRSA--SAPARETQHKLYVSNLSWKVRSTHLRE 193
+ +E+ GR + ++ +++ K R +R+ A E L+V NLSW + E
Sbjct: 356 LLNGKEIDGRPVNIDKSEQKDKGAAREKRAEKFGDSASEPSAVLFVGNLSWDCTEDQVWE 415
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F + + S ++ + GR G+G+V F E A+ A L G E+ GRP+RL + Q
Sbjct: 416 VFGEHGDVKSVRLPTDRETGRPKGFGYVEFTDIETAKKAFEGLSGTEVAGRPIRLDYSQP 475
Query: 254 NDD 256
D+
Sbjct: 476 RDN 478
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT 225
A+A E ++V LSW V + L + F+ +S++V + N G+S G+G+V FAT
Sbjct: 288 AAAVEEEGTKSIFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEFAT 347
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
E EAA+ L+GKE+ GRP+ + ++ D + K E
Sbjct: 348 TEAVEAAL-LLNGKEIDGRPVNIDKSEQKDKGAAREKRAE 386
>gi|410083501|ref|XP_003959328.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
gi|372465919|emb|CCF60193.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
Length = 365
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL S + +K F G +VDV+++ K + N+AF+ ++ +A A+ +
Sbjct: 33 LYIGNLDKSINEDALKQYFQVAGQIVDVKVMVDKKNNHVNYAFIEYSTNHDANVALQTLN 92
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + I++ +A + S + +T L++ +L+ V T L F +
Sbjct: 93 GIQIENKNIKINWAFQ--------SQTNLNDDTSFNLFIGDLNVNVDDTTLANAFKSCPG 144
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ + V+++ RS GYGFVSF T E A+AA+ + G E+ GR +R+ + K
Sbjct: 145 FLQAHVMWDMQTSRSRGYGFVSFDTHENAQAAMDQMQGHEINGRAIRINWATK 197
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N A + +F G + V+++ + G+++ F FV+ A+ E+AQ AV++ +
Sbjct: 184 VYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMN 243
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR I V A+K K+ Q R LYV NL + LR
Sbjct: 244 GKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERLRT 303
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F+ +EA A++ ++GK + +PL + Q+
Sbjct: 304 EFSPFGTITSAKVMMEG--GHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQR 361
Query: 254 NDD 256
++
Sbjct: 362 KEE 364
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 21/265 (7%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS P L I++ + SL Y NF + +V T+ ++ KP + +Q
Sbjct: 22 FSPAGPIL--SIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETMNLDVIKGKPVRIMWSQ 79
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ RK ++V NL S + + F+ G ++ +++ + G ++ + FV +
Sbjct: 80 RDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVVSDENG-SKGYGFVHFET 138
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVR 187
E A+ A+ + + + + ++V F FK R +R AR + +Y+ N +
Sbjct: 139 QESAEKAIEKMNG--IVLKSLKV-FVGHFKS-RKERELELGARAREFTNVYIKNFGEDMD 194
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ L E F F S V GRS G+GFVS+AT E+A+ A+ ++GKEL GR +
Sbjct: 195 NARLGEIF-GRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIY 253
Query: 248 LKFGQKNDD-VSESNKEEEDVSEDQ 271
+ QK + +E + E + +D+
Sbjct: 254 VGRAQKKGERQTELKRHFEQIKQDR 278
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V +AQ +
Sbjct: 4 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S ++V NL + + L + FS
Sbjct: 64 NLDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFVKNLEKSIDNRALFDAFSGFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KVV S+E S GYGFV F T+E AE AI ++G
Sbjct: 115 NILSCKVV--SDENGSKGYGFVHFETQESAEKAIEKMNG 151
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + S GY +V+F +A+ + ++
Sbjct: 4 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 64 NLDVIKGKPVRIMWSQRDPSLRKSG 88
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K+ F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
+ E A+AAV + +++ G+ + V E +KF++ + +R S
Sbjct: 230 FETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGV-- 287
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ FS + ++S V EGRS G+GFV F + EA A+
Sbjct: 288 --NLYVKNLDDSIDDERLRKEFSL-YGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAV 344
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ L+G+ + +PL + Q+ ++
Sbjct: 345 TELNGRVVGSKPLYVALAQRKEE 367
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++++ P +RS +++ NL ++ + + + FSA
Sbjct: 64 NFDLIRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDRQIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + +G S GYGFV F T+E A +I ++G L G+ +
Sbjct: 115 NILSCKVALDE-KGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKV 160
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSG 88
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHK-------- 176
+ E A+AAV + +++ G+ + V A+ KK Q+ E + K
Sbjct: 230 FETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGV 287
Query: 177 -LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV NL + LR FS N S+KV+ + EGRS G+GFV F EA A++
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTE 346
Query: 236 LDGKELMGRPLRLKFGQKNDD 256
L+G+ + +PL + Q+ ++
Sbjct: 347 LNGRVVGSKPLYVALAQRKEE 367
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLVRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + +G S GYGFV F T+E A +I ++G L G+ +
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + +P+R+ + Q++
Sbjct: 64 NFDLVRNKPIRIMWSQRD 81
>gi|320588360|gb|EFX00829.1| rnp domain containing protein [Grosmannia clavigera kw1407]
Length = 363
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 79 RKLYVFNLPWSFSVAEIKNLF---APCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
R++YV NLP++ ++K+LF A V +I G++R V SP++A+ A
Sbjct: 170 RQIYVANLPFTIGWQDLKDLFRQAARTAGVARADINIGPDGRSRGSGIVVFESPDDARNA 229
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ QF+ + GR++ V P P + E ++V NL W + L E F
Sbjct: 230 IQQFNGYDWQGRVLEV-------PPNPFTDHATSGNEPSEIIFVRNLPWSTSNEDLVELF 282
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +E + GRS G G V F E A+ AIS G + GRPL L F
Sbjct: 283 GTIGKVEQAEIQYEPS-GRSRGSGVVRFDNPETADTAISKFQGYQYGGRPLGLSF 336
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NLPWS S ++ LF G V EI G++R V +PE A A+++F
Sbjct: 264 IFVRNLPWSTSNEDLVELFGTIGKVEQAEIQYEPSGRSRGSGVVRFDNPETADTAISKFQ 323
Query: 141 TQEVSGRIIRVEFAK 155
+ GR + + F K
Sbjct: 324 GYQYGGRPLGLSFVK 338
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+T +Q+ R++YV NL + +K+ G V+ +++ G M+
Sbjct: 79 ETSQQD--RRVYVGNLSYDVKWHHLKDFMRQAGEVIFADVLLLPNG---------MSKDR 127
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
EA+ NQ + G + A + P + P ++YV+NL + +
Sbjct: 128 EAEPRFNQA-SGPRGGYSGAMGGAPAYGGPIGGPGFN-PGMGGSRQIYVANLPFTIGWQD 185
Query: 191 LREFF--SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L++ F +A V+ + +GRS G G V F + ++A AI +G + GR L +
Sbjct: 186 LKDLFRQAARTAGVARADINIGPDGRSRGSGIVVFESPDDARNAIQQFNGYDWQGRVLEV 245
Query: 249 KFGQKNDDVSESNKEEE 265
D + N+ E
Sbjct: 246 PPNPFTDHATSGNEPSE 262
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G+++ F FV EEAQ AV +
Sbjct: 193 VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++GR++ V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVN----RYQGVNLYVKNLDDGIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSAKVMTEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R + FV + E A A+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +Y+ N + LRE FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ ++N GRS G+GFV+F EEA+ A++ ++GKE+ GR L + QK
Sbjct: 216 KTLSVKVMMDNN-GRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQK 268
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQ--RDPGLRKSGVG-------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N R GYGFV F T E A AI +++G L R
Sbjct: 124 NILSCKVVCDENGSR--GYGFVHFETHEAATRAIETMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL +++LF G + V+++ + GK++ F FV+ E+A+ AV + +
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMN 252
Query: 141 TQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHK----------------LYVSNLS 183
++++G+ I V A KK ++ + ++ +HK LYV NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLD 312
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ LR+ FS S+KV E GRS G+GFV F++ EEA A++ ++GK +
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMNGKIVAT 370
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ ++
Sbjct: 371 KPLYVALAQRKEE 383
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + F+ G ++ +++ + G ++ + FV + EEA+ A+ + +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ + F +FK R R A AR + +Y+ NL + L++ F F
Sbjct: 160 GMFLNDHKV---FVGRFKSRR-DRQAELGARAKEFTNVYIKNLGEDMDDERLQDLF-GRF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V G+S G+GFVSF E+A A+ ++GK+L G+ + + QK
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQK 268
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + ++ +A V E+A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S ++V NL + S L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KVV + N S GYGFV F T+EEAE AI ++G
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNG 160
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 73 QKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
Q +++R K LYV NL ++ F+P GT+ ++ +GG+++ F FV +SP
Sbjct: 295 QDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSP 353
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA AV + + + V+ + + V A++
Sbjct: 354 EEATKAVTEMNGKIVATKPLYVALAQR 380
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY V+F E+AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F G + V+++ GK+R F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E++G+ + V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V + P +A+ A++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVVKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVS+ E+A A+ ++G EL G+ + + QK
Sbjct: 216 KTLSVKVMTDPS-GKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQK 268
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F+ +AE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSG 97
>gi|19112906|ref|NP_596114.1| RNA-binding protein (predicted) [Schizosaccharomyces pombe 972h-]
gi|74676076|sp|O74400.1|YOCE_SCHPO RecName: Full=Uncharacterized RNA-binding protein C4F6.14
gi|3560147|emb|CAA20734.1| RNA-binding protein (predicted) [Schizosaccharomyces pombe]
Length = 674
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 24/218 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL + ++ N F+ G + ++ + + G+NR + FVT + E+AQ A +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-----QHKLYVSNLSWKVRS-THLRE 193
+++ GRI+R++FA K+ + ++T + +L + NL W ++ HL
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS F V + GR G+ FV ++ AE A++SL+G E+ GRP+ + +
Sbjct: 127 HFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVS 185
Query: 254 ND-----DVSESNKEEED-----------VSEDQSAES 275
D + +++ EEE+ V+ED SA+S
Sbjct: 186 KDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADS 223
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 62 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAE-IKNLFAPCGTVVDVEIIKHKGGKNRN 120
DT ++T +Q+ R +L + NLPWS + ++ F+ G V +++I GG+
Sbjct: 90 DTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCG 149
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
FAFV M + A+ A+N + E+ GR I V++A
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N + + ++ +LF GT+ ++ + G ++ F F+ PE A+ AV + +
Sbjct: 195 VYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMN 254
Query: 141 TQEVSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
E++G + V E K+ KK Q R +Y+ NL + LR+
Sbjct: 255 NYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRK 314
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F+T EEA AI+ +DG+ + +P+ + Q+
Sbjct: 315 EFSQFGAITSAKVMTEG--GRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVALAQR 372
Query: 254 NDD 256
+D
Sbjct: 373 YED 375
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + K +A+V + EA+ ++
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTM 73
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 74 NFDLLKGKPIRIMWSQR--DPSLRKSGIG-------NVFIKNLDKSIDNKAMYDTFSAFG 124
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KF---GQKND 255
N +S KV + ++G S GYGFV F + E A AI ++G L G+ + + KF ++
Sbjct: 125 NILSCKVAID-DDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREK 183
Query: 256 DVSESNKEEEDV 267
++ E +K+ +V
Sbjct: 184 EIGEKSKKYTNV 195
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL +F ++ F+ G + +++ +GG+++ F FV ++PEEA A+ + D
Sbjct: 298 VYIKNLDDTFDNDRLRKEFSQFGAITSAKVMT-EGGRSKGFGFVCFSTPEEASKAITEMD 356
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ + + I V A++++ R SA R
Sbjct: 357 GRMIGSKPIYVALAQRYEDRRAYLSAQCMQR 387
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
+ E A+AAV + +++ G+ + V E +KF++ + +R S
Sbjct: 230 YETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGV-- 287
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ FS + ++S V +EGRS G+GFV F + EA A+
Sbjct: 288 --NLYVKNLDDSIDDERLRKEFSL-YGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAV 344
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ L+G+ + +PL + Q+ ++
Sbjct: 345 TELNGRVVGSKPLYVALAQRKEE 367
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLIRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + +G S GYGFV F T+E A +I ++G L G+ +
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSG 88
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL +++LF G + V+++ + GK++ F FV+ E+A+ AV + +
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMN 252
Query: 141 TQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHK----------------LYVSNLS 183
++++G+ I V A KK ++ + ++ +HK LYV NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLD 312
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ LR+ FS S+KV E GRS G+GFV F++ EEA A++ ++GK +
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMNGKIVAT 370
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ ++
Sbjct: 371 KPLYVALAQRKEE 383
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + F+ G ++ +++ + G ++ + FV + EEA+ A+ + +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ + F +FK R R A AR + +Y+ NL + L++ F F
Sbjct: 160 GMFLNDHKV---FVGRFKSRR-DRQAELGARAKEFTNVYIKNLGEDMDDERLQDLF-GRF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V G+S G+GFVSF E+A A+ ++GK+L G+ + + QK
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQK 268
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + ++ +A V E+A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S ++V NL + S L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KVV + N S GYGFV F T+EEAE AI ++G
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNG 160
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 73 QKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
Q +++R K LYV NL ++ F+P GT+ ++ +GG+++ F FV +SP
Sbjct: 295 QDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSP 353
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA AV + + + V+ + + V A++
Sbjct: 354 EEATKAVTEMNGKIVATKPLYVALAQR 380
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY V+F E+AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ LF+ G + V+++ + G++R F FV EEAQ AV+ +
Sbjct: 193 IYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+E+ GR++ V A+K R +R + R Q K LYV NL +
Sbjct: 253 GKELGGRVLYVGRAQK----RSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 7/177 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R F FV + E A A+N +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+S KV+ + N G+S G+GFV+F EEA+ A+S+++GKEL GR L + QK +
Sbjct: 216 KTLSVKVMVDEN-GQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSE 271
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ +++ + P ++S +++ NL + + L + FS
Sbjct: 73 NFEVIKGRPIRIMWSQ--RDPGLRKSGIG-------NIFIKNLDDSIDNKALYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N R G+GFV F T E A AI++++G L R
Sbjct: 124 NILSCKVVCDENGSR--GFGFVHFETHEAANQAINTMNGMLLNDR 166
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FSA +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL +++LF G ++ V++++ G +R F FV EEAQ AV+ +
Sbjct: 193 IYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSG+ + V A+K K+ Q R LYV NL + LR
Sbjct: 253 GKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEKLRT 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E + S G+GFV F++ EEA A++ ++G + +PL + Q+
Sbjct: 313 VFSPYGVITSAKVMTEGDH--SKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+ +
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A A+ + +YV NLS + L++ F A
Sbjct: 160 GMLLNDRKV---FVGHFKSQR-EREAELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
N +S KV+ N G S G+GFV+F EEA+ A+ ++GKE+ G+ L + QK
Sbjct: 216 NMLSVKVM-RDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQK 268
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G+++ V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ +EA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDSS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y N+ FS E K LF G + + + K GK++ F FV + E A AV++ +
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELN 293
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K KK ++ L++ NL + S L E
Sbjct: 294 DKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEE 353
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+
Sbjct: 354 EFKP-FGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQR 412
Query: 254 ND 255
D
Sbjct: 413 KD 414
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + +++ F P G++ ++ + GK++ F FV +SPEEA A+ + +
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMN 396
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ + G+ + V A++ R Q AR
Sbjct: 397 QRMIYGKPLYVALAQRKDVRRSQLEQQIQAR 427
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
SA +T LYV L+ V L E FS S +V ++ +S GY +V+F
Sbjct: 43 SAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKF 102
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKN 254
E+ E AI L+ + GRP R+ + Q++
Sbjct: 103 EDGEKAIEDLNYSLIEGRPCRIMWSQRD 130
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRR 79
I++ + + SL Y NF + L + +E +P + + ++N
Sbjct: 80 IRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDG 139
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + + + F G ++ ++ G ++ F FV + E A+AA+
Sbjct: 140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENV 199
Query: 140 DTQEVSGRIIRVEFAKKF-KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ R + V K KK R + A T +Y N+ ++ F A
Sbjct: 200 NGMLLNDREVYV--GKHISKKDRESKFEEMKANFTN--VYAKNIDLDFSEEEFKKLFEA- 254
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ ++S + + +EG+S G+GFV+F E A A+ L+ KE+ G+ + + QK
Sbjct: 255 YGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQK 309
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ +++ + P +R+ +++ NL + + L + F+A F
Sbjct: 113 NYSLIEGRPCRIMWSQ--RDPSLRRNGDG-------NIFIKNLHPAIDNKALHDTFTA-F 162
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G S +GFV + T E AEAAI +++G L R
Sbjct: 163 GKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDR 207
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K +F G + + ++ GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ + V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 98/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF-CKY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD-VS 258
P S V + G+S G+GFVSF E+A+ A+ ++GKE+ G+ + + QK + +
Sbjct: 215 GPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+ I V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V +LRE FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ +K F P G V+ +I + GK+R + +V S +A+ A+ F
Sbjct: 5 LFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKALQDF 64
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSA------------SAPARETQHKLYVSNLSWKVR 187
+E+ GR I ++ + +PQ A SAP+ L++ NLS+
Sbjct: 65 QGKEIDGRPINLDLSTS----KPQTPAKNDRAKKFGDVVSAPS----DTLFIGNLSFNAT 116
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L E F +S ++ + + G+G+V + + EEA+AA+ +L+G+ + GRP R
Sbjct: 117 RDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNGEYIEGRPCR 176
Query: 248 LKFGQKNDDVS 258
L + D S
Sbjct: 177 LDYSTPRDPAS 187
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ + F V+ ++ + G++R + +V S E+AQ A+ QF
Sbjct: 262 LFVGRLAWAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYGYVDFESKEQAQKALEQF 321
Query: 140 DTQEVSGRIIRVEFA----------KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+ GR I ++ + +KF+ R ++ P++ + L+V NLS++
Sbjct: 322 QGREIEGRPINLDMSTSKPQTPSQNQKFQD-RAKKYGDTPSQPS-DTLFVGNLSFQADRD 379
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+EFF + + ++ + G+G+V F + +EA+AA+ +L+G+ + GRP+RL
Sbjct: 380 TLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALNGEYIAGRPVRLD 439
Query: 250 FGQKND 255
F D
Sbjct: 440 FSAPRD 445
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K F G + V+++ GK+R F FV+ E+AQ AV+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ I +VE + K+ Q R LYV NL + LR+
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ + S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 102/193 (52%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E+F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + + G+S G+GFVSF E+A+ A+ ++GK+L G+ + + QK + +
Sbjct: 216 AALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 98/190 (51%), Gaps = 23/190 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ ++K +F+ G + V ++K + G++R F FV A +AQ AV++ +
Sbjct: 191 VYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMN 250
Query: 141 TQEVSGRIIRV-----------EFAKKF---KKPRPQRSASAPARETQHKLYVSNLSWKV 186
E++G++I V E +KF K+ R QR LYV NL +
Sbjct: 251 GTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-------NLYVKNLDDGI 303
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
LR+ F+ S+KV+ + + R G+GFV F++ EEA A++ ++G+ + +PL
Sbjct: 304 DDERLRKEFAPYGTITSAKVMTDGPQSR--GFGFVCFSSPEEATKAVTEMNGRIVATKPL 361
Query: 247 RLKFGQKNDD 256
+ Q+ ++
Sbjct: 362 YVALAQRREE 371
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 16/206 (7%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N S +++N+F G + +++ GK++ F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQE-VSGRIIRVEFAKKFKKPRPQ---RSASAPARETQHK----- 176
SPE A+ AV+ + +E V G+ + V A+K K R Q R A E ++
Sbjct: 239 FESPEAAETAVDALNGKELVEGKPLYVGRAQK-KAERQQELKRRFEALKMERLNRYQGVN 297
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE------GRSAGYGFVSFATKEEAE 230
LYV NL + LR+ F+ S+KV+ E N+ RS G+GFV F++ EEA
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEAT 357
Query: 231 AAISSLDGKELMGRPLRLKFGQKNDD 256
A++ ++G+ + +PL + Q+ +D
Sbjct: 358 KAVTEMNGRIVGSKPLYVALAQRKED 383
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDLIRGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDRSIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + N G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVAQDEN-GTSKGYGFVHFETEEAANKSIEKVNGMLLNGK 167
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L + FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDLIRGRPIRIMWSQRDPSLRKSG 97
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ +K F G V+ + I+ GK+R + +V +S A+ A+N+
Sbjct: 183 LFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSSKAAAEKALNEL 242
Query: 140 DTQEVSGRIIRVEFA-KKFKKP----RPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+E+ GR + ++ + K K P R ++ P+ + L++ NLS+ L E
Sbjct: 243 QGKEIDGRPVNLDMSTGKPKTPASNDRAKKFGDVPSAPSDT-LFIGNLSFNTERNKLFEI 301
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F VS ++ + + G+G+V F++ EEA+ A++SL+G+ L GRP RL F
Sbjct: 302 FGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRLDFSTPR 361
Query: 255 DD 256
D+
Sbjct: 362 DN 363
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 163 QRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
Q++ P A E L+V LSW V L+ F +S++V+ E + G+S GYG+V
Sbjct: 168 QKTEETPEASEEPATLFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYV 227
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRL 248
F++K AE A++ L GKE+ GRP+ L
Sbjct: 228 DFSSKAAAEKALNELQGKEIDGRPVNL 254
>gi|452986581|gb|EME86337.1| hypothetical protein MYCFIDRAFT_97432, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 540
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFA 122
T PE T + RR ++V L E+K F G VVD +I+K + G+++
Sbjct: 143 TKRKTPEPTDDERDRRTVFVQQLAARLRSRELKEFFQQVGDVVDAQIVKDRVSGRSKGVG 202
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ----HKLY 178
+V E Q A+ Q Q++ G I + + +K R R+ A ++ H+LY
Sbjct: 203 YVEFKEEESVQKAI-QLTGQKLLGIPIIAQLTEA-EKNRQARNTEGTATQSNGIPFHRLY 260
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V N+ + + L+ F F + + + GRS GYGFV F +A+ A+ ++G
Sbjct: 261 VGNIHFSITEDDLKNVFEP-FGELEFVQLQKEEAGRSKGYGFVQFIDPAQAKEALEKMNG 319
Query: 239 KELMGRPLRLKFG 251
EL GRP+R+ G
Sbjct: 320 FELAGRPIRVGLG 332
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 11/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + +K +F GT+ ++ K K+R F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRVMI-KENKSRGFGFVA 228
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
+PE A+ AV + + +E+ G+++ V A+K K+ Q R L
Sbjct: 229 FENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNL 288
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ FS S+KV+ E EGRS G+GFV F+ EEA A++ ++
Sbjct: 289 YVKNLDDSIDDERLRKEFSPFGTITSAKVMLE--EGRSKGFGFVCFSAAEEATKAVTEMN 346
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 347 GRIVGSKPLYVALAQRKED 365
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 64 NFDLIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KV + +G S GYGFV F T+E A +I ++G L
Sbjct: 115 NILSCKVA-QDEKGNSKGYGFVHFETEESANTSIEKVNGMLL 155
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSG 88
>gi|327351492|gb|EGE80349.1| pre-mRNA splicing factor [Ajellomyces dermatitidis ATCC 18188]
Length = 1373
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 106/231 (45%), Gaps = 16/231 (6%)
Query: 29 HCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNI--RRKLYVFNL 86
+ +KLL + PS + F TR L T T E +QT +I L+V N
Sbjct: 895 NSLKLLSRQGTQPSATVEFDTREDAL-AAQTRDQRTFE---DQTISVHIGTNTTLFVTNF 950
Query: 87 PWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT-QEVS 145
P + A +++LF P G VVD+ K +R F +V + A AA T QEVS
Sbjct: 951 PPTADEAYVRDLFTPYGEVVDIRFPSLKYNTHRRFCYVQFQTASAAHAATELNGTQQEVS 1010
Query: 146 GRII------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
G + ++ K P ++ + P E + +++VSNL WK L E F+A +
Sbjct: 1011 GNSMVSAESTKLPLVVKISDPTKRQDRTGPMEEGR-EIHVSNLDWKATEDDLVELFTA-Y 1068
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
V + G S G+GFV F TK+ AEAA+ ++ + RPL +
Sbjct: 1069 GEVEGARIPRKANGASKGFGFVVFRTKKSAEAAL-AMHEQLFRSRPLNVHI 1118
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 12/200 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + +++ +F G + +I+ GK++ F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQE-VSGRIIRVEFAKKFKKPRPQ---RSASAPARETQHK----- 176
SPE A+ AV + +E + G+ + V A+K K R Q R A E ++
Sbjct: 239 FESPEAAETAVEALNGKEIIDGKPLYVGRAQK-KAERQQELKRRFEALKMERLNRYQGVN 297
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV NL + LR+ FS S+KV+ E N RS G+GFV F++ EEA A++ +
Sbjct: 298 LYVKNLDDTIDDERLRKEFSPFGTITSAKVMMEDN--RSKGFGFVCFSSPEEATKAVTEM 355
Query: 237 DGKELMGRPLRLKFGQKNDD 256
+G+ + +PL + Q+ +D
Sbjct: 356 NGRIVGSKPLYVALAQRKED 375
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDLIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDRSIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + N G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVAQDEN-GTSKGYGFVHFETEEAANKSIEKVNGMLLNGK 167
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDLIKGRPIRIMWSQRDPSLRKSG 97
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 101/191 (52%), Gaps = 9/191 (4%)
Query: 70 EQTQKQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
E+ Q Q ++ +YV NL + E+++L P G + ++ I+ + K++ F F +
Sbjct: 176 ERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFET 235
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHK---LYVSNLSW 184
P+EA+ V + + G++I V A+K + +R A + ET+++ LY+ N+
Sbjct: 236 PDEAKNCVEAENGKLFHGKVIYVGRAQK----KMEREAELKHKFETKYQGVNLYIKNIDD 291
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S LR F+A S+KV+ + S G+GFV + T +EA A++ + G+ + +
Sbjct: 292 SIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNK 351
Query: 245 PLRLKFGQKND 255
PL + F Q+ +
Sbjct: 352 PLYVAFAQRKE 362
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + +++ +F G V ++ I + + N+A+V +P +A+ A++
Sbjct: 10 LYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDTL 69
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ R+ ++++ P ++S +++ NL V L + FSA
Sbjct: 70 NNTLVKGKACRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSVDHKALFDTFSAFG 120
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KVV + S G+GFV + +++ A+ AI ++G
Sbjct: 121 NILSCKVVTDETN-VSKGFGFVHYESQDSADKAIMKVNG 158
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV +L V + L E F+ PV++ ++ ++ RS Y +V++ +AE A+ +
Sbjct: 10 LYVGDLHQDVTDSQLFEIFN-QVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDT 68
Query: 236 LDGKELMGRPLRLKFGQKNDDVSES 260
L+ + G+ R+ + Q++ + +S
Sbjct: 69 LNNTLVKGKACRIMWSQRDPSLRKS 93
>gi|303323779|ref|XP_003071881.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111583|gb|EER29736.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320031835|gb|EFW13793.1| nucleic acid-binding protein [Coccidioides posadasii str. Silveira]
Length = 334
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 5/187 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++KN F+ CG V V ++ G ++ F +V E A+ AV
Sbjct: 143 IYVGNLFFDVTAGDLKNEFSKCGPVEGVRLLYDYRGVSKGFGYVKFHDVETAEKAVALMH 202
Query: 141 TQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
Q GR + V FA+ + KP P R LY+ N+ +++ L E F
Sbjct: 203 GQLFEGRHLAVNFARVELDKPMNHDPTKPPTRT----LYIGNIPFEMTDRDLNELFKDVD 258
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
N + +V + GR+ G+ F E A A + L K GRPLR+ + N +
Sbjct: 259 NIIDVRVAVDRRTGRARGFVHADFTDIESARKAFTLLSTKTPYGRPLRIDYSHSNIKIQP 318
Query: 260 SNKEEED 266
+ + D
Sbjct: 319 AGPPKRD 325
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
R LY+ N+P+ + ++ LF ++DV + + + G+ R F E A+ A
Sbjct: 234 RTLYIGNIPFEMTDRDLNELFKDVDNIIDVRVAVDRRTGRARGFVHADFTDIESARKAFT 293
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE 172
T+ GR +R++++ K +P A P R+
Sbjct: 294 LLSTKTPYGRPLRIDYSHSNIKIQP---AGPPKRD 325
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF- 139
+YV NL + + +++ +F GT+ ++K + GK+R F FV P+ A AAV +
Sbjct: 226 VYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLN 285
Query: 140 ------DTQEVSGRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
D GR R E KF++ R R R LY+ NL +
Sbjct: 286 GTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYE----RLKAANLYLKNLDDNIND 341
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E FS F ++S V ++G S G GFV+F+T EEA A+ ++GK + +PL +
Sbjct: 342 VKLKELFS-EFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYV 400
Query: 249 KFGQKNDD 256
Q+ ++
Sbjct: 401 AIAQRKEE 408
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 11/182 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + ++ +LF+ VV V + + + ++ + +V ++P++A A+
Sbjct: 47 LYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKAL 106
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IR+ F+ + P ++S +++ NL + + L E F+A
Sbjct: 107 NFTPLNGKPIRIMFSHR--DPSIRKSGYG-------NVFIKNLDSTLDNKLLHETFAAFG 157
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+S KV +SN G+S GYGFV F +E AE AIS LDG L + + + F + + +
Sbjct: 158 TVLSCKVAVDSN-GQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTR 216
Query: 260 SN 261
+N
Sbjct: 217 TN 218
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++++G+++ V A+K + +R A R Q K LY+ NL +
Sbjct: 253 GKDINGKMVFVGRAQK----KVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDPT-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + +++ +F G ++ +++ + G+ R F FV+ E A AV + +
Sbjct: 194 VYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELN 253
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV G+ I V E +KF++ + +R R LYV NL ++
Sbjct: 254 NKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERI----NRYQGVNLYVKNLDEQIDDE 309
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S++V+ E GR+ G+GFV F++ EEA A++ ++G+ ++ +PL +
Sbjct: 310 RLRKEFSQFGTITSARVMTEG--GRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVA 367
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 368 LAQRKED 374
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 14 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 73
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 74 NFDAIKGRPIRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKNIDNKALYDTFSAFG 124
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S K+ + N S GYGFV F T+E A +I ++G L G+
Sbjct: 125 NILSCKIAMDQNG--SLGYGFVHFETEEAARNSIEKVNGMLLNGK 167
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 5/184 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ +I + G + + FV + E A+ ++ + +
Sbjct: 102 IFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEKVN 160
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++G+ + F +F + + + +YV NL+ + LRE F F
Sbjct: 161 GMLLNGKKV---FVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEV-FG 216
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
+ S + + EG+ G+GFVSF E A A+ L+ KE+ G+ + + QK +
Sbjct: 217 KIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAE 276
Query: 261 NKEE 264
KE+
Sbjct: 277 LKEK 280
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 14 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 73
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 74 NFDAIKGRPIRIMWSQRDPSLRKSG 98
>gi|301615885|ref|XP_002937390.1| PREDICTED: nucleolin [Xenopus (Silurana) tropicalis]
Length = 705
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+ +K+ R L+V N+P+S + E++ +F D+ I K G N+ A+V ++
Sbjct: 376 ENKKERDSRTLFVKNIPYSTTAEELQEIFE---NAKDIRIPTGKDGANKGIAYVEFSNET 432
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRST 189
EA A+ + E+ GR I V+F + + Q S S + K L V+NLS+
Sbjct: 433 EATKALEEKQGAEIEGRSIFVDFTGE----KSQNSGSRRVQGGDSKVLVVNNLSYSATED 488
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F ++ + N+GR+ G+ F+ F++ E+A+ A+ S + E+ GR +RL+
Sbjct: 489 SLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSVEDAKEAMDSCNNTEIEGRSIRLE 543
Query: 250 F 250
F
Sbjct: 544 F 544
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L V NL +S + ++ +F ++ I G+ + FAF+ +S E+A+ A++ +
Sbjct: 476 LVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIEFSSVEDAKEAMDSCN 531
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANF 199
E+ GR IR+EF++ Q K L+V LS L+E F +
Sbjct: 532 NTEIEGRSIRLEFSQG------SGPQGGRGGSAQSKTLFVRGLSEDTTEETLKEAFDGSV 585
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
N +++V + + G S G+GFV F+T E+A+AA +++ E+ G + L F + D
Sbjct: 586 N---ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGSKVTLDFAKPKGD 639
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 20/187 (10%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFS---KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 249
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R + R LY+ NL +
Sbjct: 250 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERIS----RYQGVNLYIKNLDDTIDDE 305
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 306 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 363
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 364 LAQRKEE 370
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSKTL 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S V G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 ----SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 265
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
P A AV + +E++ G+I+ V A+K K+ Q R L
Sbjct: 239 FEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNL 298
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S KV+ E +GRS G+GFV F+ EEA A++ ++
Sbjct: 299 YVKNLDDTIDDERLRKEFAPFGTITSVKVMME--DGRSKGFGFVCFSLAEEATKAVTEMN 356
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 357 GRIVGSKPLYVALAQRKED 375
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 73 NFDIIKGRPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S +V + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCRVA-QDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V ++ RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + S
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRRSG 97
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL ++ LF+ G + V+++ + GK++ F FV+ E+A+ AV++ +
Sbjct: 193 VYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 141 TQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHK----------------LYVSNLS 183
++++G+ I V A KK ++ + ++ +HK LYV NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLD 312
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ LR+ FS S+KV E GRS G+GFV F++ EEA A++ ++G+ +
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 370
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ ++
Sbjct: 371 KPLYVALAQRKEE 383
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 35/276 (12%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS P L I++ + SL Y NF + T+ ++ KP + +Q
Sbjct: 31 FSSAGPIL--SIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQ 88
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ RK ++V NL S + + F+ G ++ +++ + G ++ + FV +
Sbjct: 89 RDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFET 147
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVR 187
EEA+ A+ + + ++ R + F +FK R R A AR + +Y+ NL +
Sbjct: 148 QEEAERAIEKMNGMFLNDRKV---FVGRFKSRR-DRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP-- 245
L+ FS F P S V G+S G+GFVSF E+A A+ ++GK+L G+
Sbjct: 204 DERLQGLFS-KFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIY 262
Query: 246 -------------LRLKFGQKNDDVSESNKEEEDVS 268
L+ KFGQ D + + +D+S
Sbjct: 263 VGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDIS 298
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V + RS GY V+F E+AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--------- 176
+ E A+AAV + +++ G + A+ KK Q+ E + K
Sbjct: 230 YETTEAAEAAVQALNGKDM-GESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVN 288
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV NL + LR+ FS + ++S V EGRS G+GFV F + EA A++ L
Sbjct: 289 LYVKNLDDTIDDERLRKDFSM-YGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 237 DGKELMGRPLRLKFGQKNDD 256
+G+ + +PL + Q+ ++
Sbjct: 348 NGRVIGSKPLYVALAQRKEE 367
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLIRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKGIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + +G S GYGFV F T+E A +I ++G L G+ +
Sbjct: 115 NILSCKVAIDE-KGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKV 160
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSG 88
>gi|119188517|ref|XP_001244865.1| hypothetical protein CIMG_04306 [Coccidioides immitis RS]
gi|392867773|gb|EAS33469.2| nucleic acid-binding protein [Coccidioides immitis RS]
Length = 334
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 5/187 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++KN F+ CG V V ++ G ++ F +V E A+ AV
Sbjct: 143 IYVGNLFFDVTAGDLKNEFSKCGPVEGVRLLYDYRGVSKGFGYVKFHDVETAEKAVALMH 202
Query: 141 TQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
Q GR + V FA+ + KP P R LY+ N+ +++ L E F
Sbjct: 203 GQLFEGRHLAVNFARVELDKPMNHDPTKPPTR----TLYIGNIPFEMTDRDLNELFKDVD 258
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
N + +V + GR+ G+ F E A A + L K GRPLR+ + N +
Sbjct: 259 NIIDVRVAVDRRTGRARGFVHADFTDIESARKAFTLLSTKTPYGRPLRIDYSHSNIKIQP 318
Query: 260 SNKEEED 266
+ + D
Sbjct: 319 AGPPKRD 325
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
R LY+ N+P+ + ++ LF ++DV + + + G+ R F E A+ A
Sbjct: 234 RTLYIGNIPFEMTDRDLNELFKDVDNIIDVRVAVDRRTGRARGFVHADFTDIESARKAFT 293
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE 172
T+ GR +R++++ K +P A P R+
Sbjct: 294 LLSTKTPYGRPLRIDYSHSNIKIQP---AGPPKRD 325
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV + +
Sbjct: 199 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 258
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++++G+++ V A+K + +R A R Q K LY+ NL +
Sbjct: 259 GKDINGKMVFVGRAQK----KVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDE 314
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 315 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 372
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 373 LAQRKEE 379
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 165
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 166 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG 221
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 222 KTLSVKVMTDPT-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 274
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVR 187
SP E FD + G+ IR+ ++++ P ++S +++ NL +
Sbjct: 69 SPAERALDTMNFDV--IKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSID 117
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ L + FSA N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 118 NKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 172
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +K LF G + V+++ GK+R F F++ E+A AV +
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E++G+ + V E +KF+ + +R + R LY+ NL +
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERIS----RYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V + P +A+ A++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVVKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + G+S G+GF+S+ E+A A+ ++G EL G+ + + QK
Sbjct: 216 KTLSVKVMTDPT-GKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQK 268
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F+ +AE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSG 97
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 12/192 (6%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVT 125
TK E++ K + L+V NL W+ A + F CGTV +I + G+++ F +V
Sbjct: 230 TKTEESDKPST---LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVD 286
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE-------TQHKLY 178
A+PEEA+ A + + GR I+V+F+ K +A A A++ L+
Sbjct: 287 FATPEEAEKAHGEKQGAFIDGREIKVDFSTG-KATNSNDAAGARAKKYGDTVSPESDTLF 345
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V NL + + FFS S ++ E GR G+G+V+F + E+A++A L+G
Sbjct: 346 VGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNG 405
Query: 239 KELMGRPLRLKF 250
+ + GR RL +
Sbjct: 406 QSINGRNCRLDY 417
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NLP+ + F+ V + + + + G+ + F +VT S E+A++A Q
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQR 164
+ Q ++GR R++++ PRP R
Sbjct: 404 NGQSINGRNCRLDYS----TPRPPR 424
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--------- 176
+ E A+AAV + +++ G + A+ KK Q+ E + K
Sbjct: 230 YETTEAAEAAVQALNGKDM-GESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVN 288
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV NL + LR+ FS + ++S V EGRS G+GFV F + EA A++ L
Sbjct: 289 LYVKNLDDTIDDERLRKDFSM-YGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 237 DGKELMGRPLRLKFGQKNDD 256
+G+ + +PL + Q+ ++
Sbjct: 348 NGRVIGSKPLYVALAQRKEE 367
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLIRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKGIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + +G S GYGFV F T+E A +I ++G L G+ +
Sbjct: 115 NILSCKVAIDE-KGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKV 160
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSG 88
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 10/199 (5%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFA 122
V P + + + LYV NL + A ++ +F+ G V +++IIK K G + +
Sbjct: 7 AVSQNPARLGSGDAAKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYG 66
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNL 182
FV A A+ + + + G+ +RV +A F+K + + SAS Q +++V +L
Sbjct: 67 FVQFLDHRAADMALQSLNGRVLHGQELRVNWA--FQKDQREDSAS------QFQIFVGDL 118
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ + L E F + ++V+++ N GRS GYGFVSF T+ +AE A+S + G L
Sbjct: 119 ASDINDKLLCEAFQ-SCGCADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLG 177
Query: 243 GRPLRLKFGQKNDDVSESN 261
R +R + Q + S+++
Sbjct: 178 SRRIRCGWAQHKQENSQAS 196
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 36/275 (13%)
Query: 7 AATSIFLTN-HPFSFSCL----FPKLPHC--IKLLHSSNSTPSLSYNFP------TRNLC 53
AA ++++ N HPF + F L IK++ + S Y F ++
Sbjct: 20 AAKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMA 79
Query: 54 LQVCSTL----QDTTVETKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVD 107
LQ + Q+ V ++ Q+++ + +F +L + + F CG
Sbjct: 80 LQSLNGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDINDKLLCEAFQSCGCADA 139
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
+ H G+++ + FV+ + +A+ A++Q + R IR +A+ K+ Q S +
Sbjct: 140 RVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQH-KQENSQASFA 198
Query: 168 APARET----------QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
A R + +YV NL+ V L+ S F V ++ R G
Sbjct: 199 AVDRVSTLSRAQADPENANVYVGNLAPDVSDAELQTAVS-QFGAVLDVKIY-----RKGG 252
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
Y F FA+ +A AI L G+ L G+ L+ +G+
Sbjct: 253 YAFAQFASHADAVRAIVGLSGQNLGGKALKCSWGR 287
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
+ F++ Q A + + LYV NL V L+E FS K++ + G
Sbjct: 2 QGFQQAVSQNPARLGSGDAAKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGL 61
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG----QKNDDVSESNKEEEDVSED 270
SAGYGFV F A+ A+ SL+G+ L G+ LR+ + Q+ D S+ D++ D
Sbjct: 62 SAGYGFVQFLDHRAADMALQSLNGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASD 121
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 18/210 (8%)
Query: 65 VETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRN 120
VE + +KQ + + L+V L WS +K F P G V+ +I + GK+R
Sbjct: 218 VEEEAAPAKKQKVDEEPATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKSRG 277
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS----------ASAPA 170
+ +V S A+ A+ ++ +E+ GR I ++ + RS SAP+
Sbjct: 278 YGYVDFDSKSAAEKALKEYQGREIDGRPINLDMSTGKPHASNNRSNDRASKFGDTPSAPS 337
Query: 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230
L++ NLS+ +L E FS + VS ++ + + G+G+V + + +EA+
Sbjct: 338 ----DTLFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAK 393
Query: 231 AAISSLDGKELMGRPLRLKFGQKNDDVSES 260
AA+ +L+G+ + GRP+RL F D+ + S
Sbjct: 394 AALEALNGEYIEGRPVRLDFSAPRDNSNRS 423
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ GK+R F FV+ E+A AV +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E++G+ + V E +KF+ + +R + R LY+ NL +
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERIS----RYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V + P +A+ A++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVVKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+S KV+ + G+S G+GFVS+ E+A A+ ++G EL G+ + + QK ++
Sbjct: 216 KTLSVKVMMDPT-GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNE 271
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F+ +AE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSG 97
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V+++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G+++ V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERL----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGAITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + G+S G+GFVSF E+A A+ ++GK++ G+ + + QK
Sbjct: 216 KTLSVKVMTDPT-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHK-------- 176
+ E A+AAV + +++ G+ + V A+ KK Q+ E + K
Sbjct: 230 FETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGV 287
Query: 177 -LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV NL + LR FS N S+KV+ + EGRS G+GFV F EA A++
Sbjct: 288 NLYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAPSEATCAVTE 346
Query: 236 LDGKELMGRPLRLKFGQKNDD 256
L+G+ + +PL + Q+ ++
Sbjct: 347 LNGRVVGSKPLYVALAQRKEE 367
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLVRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + +G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSG 88
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ ++V L W+ +K FA G VV + + + GK++ F +V A A+ AV
Sbjct: 272 KSIFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEFADAASAKKAVE 331
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASA---PARETQHKLYVSNLSWKVRSTHLREF 194
+ +E+ GR + ++ A P P+R A A E L+V NL++ + E
Sbjct: 332 TMNGREIDGRPVNLDLATPRGPPNPERRAKAFGDSRSEPSATLFVGNLAFSATQDAVYEL 391
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F A V+ ++ + + G+ G+G+V FA E A A++ L G + GR +RL F
Sbjct: 392 FGAVGEVVNVRLPTDRDSGQPKGFGYVEFADVETASKALNELGGTDFEGRNIRLDF 447
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 164 RSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
++ A E ++V LSW V L+ F+ VS++V + G+S G+G+V F
Sbjct: 261 KTDGAEGGEEVKSIFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEF 320
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
A A+ A+ +++G+E+ GRP+ L
Sbjct: 321 ADAASAKKAVETMNGREIDGRPVNLDL 347
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL +S + + LF G VV+V + G+ + F +V A E A A+N+
Sbjct: 374 LFVGNLAFSATQDAVYELFGAVGEVVNVRLPTDRDSGQPKGFGYVEFADVETASKALNEL 433
Query: 140 DTQEVSGRIIRVEFA 154
+ GR IR++F+
Sbjct: 434 GGTDFEGRNIRLDFS 448
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ GK+R F FV+ E+A AV +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E++G+ + V E +KF+ + +R + R LY+ NL +
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERIS----RYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E EGRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V + P +A+ A++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVVKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N + L+E F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+S KV+ + G+S G+GFVS+ E+A A+ ++G EL G+ + + QK ++
Sbjct: 216 KTLSVKVMMDPT-GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNE 271
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F+ +AE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSG 97
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL +++LF+ G + V+++ + GK++ F FV+ E+A+ AV++ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK--------------FKKPRPQRSASAPARETQHK---LYVSNLS 183
++++G+ I V A+K K+ +P+ R + + LYV NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLD 312
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ LR+ FS S+KV E GRS G+GFV F++ EEA A++ ++G+ +
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 370
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ ++
Sbjct: 371 KPLYVALAQRKEE 383
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 20/246 (8%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS P L I++ + SL Y NF + T+ ++ KP + +Q
Sbjct: 31 FSPAGPIL--SIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQ 88
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ RK ++V NL S + + F+ G ++ +++ + G ++ + FV +
Sbjct: 89 RDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFET 147
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVR 187
EEA+ A+ + + ++ R + F +FK R R A AR + +Y+ NL +
Sbjct: 148 QEEAERAIEKMNGMFLNDRKV---FVGRFKSRR-DRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L++ FS F P S V G+S G+GFVSF E+A A+ ++GK+L G+ +
Sbjct: 204 DERLQDLFS-RFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIY 262
Query: 248 LKFGQK 253
+ QK
Sbjct: 263 VGRAQK 268
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY V+F E+AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHK-------- 176
+ E A+AAV + +++ G+ + V A+ KK Q+ E + K
Sbjct: 230 FETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGV 287
Query: 177 -LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV NL + LR FS N S+KV+ + EGRS G+GFV F EA A++
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTE 346
Query: 236 LDGKELMGRPLRLKFGQKNDD 256
L+G+ + +PL + Q+ ++
Sbjct: 347 LNGRVVGSKPLYVALAQRKEE 367
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLLRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + +G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L +P+R+ + Q++ + S
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSG 88
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ A +K F G V+ +I + GK+R + +V S A+ A+ +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+E+ GR I ++ + +P S S R Q+ L++ NLS+ +
Sbjct: 230 QGKEIDGRPINLDMSTG----KPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L F N +S +V + + G+G+V F++ +EA+AA+ +++G+ + GRP RL F
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 251 GQKNDDV 257
D+
Sbjct: 346 STPRDNT 352
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
KK +P S PA L+V LSW + L+ F + ++V+ E G+S G
Sbjct: 156 KKSKPAASTEEPA-----TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRG 210
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
YG+V F +K AE A+ + GKE+ GRP+ L S+SN +
Sbjct: 211 YGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNND 256
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ A +K F G V+ +I + GK+R + +V S A+ A+ +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+E+ GR I ++ + +P S S R Q+ L++ NLS+ +
Sbjct: 230 QGKEIDGRPINLDMSTG----KPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L F N +S +V + + G+G+V F++ +EA+AA+ +++G+ + GRP RL F
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 251 GQKNDDV 257
D+
Sbjct: 346 STPRDNT 352
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
KK +P S PA L+V LSW + L+ F + ++V+ E G+S G
Sbjct: 156 KKSKPAASTEEPA-----TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRG 210
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
YG+V F +K AE A+ + GKE+ GRP+ L S+SN +
Sbjct: 211 YGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNND 256
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++K +F GT+ +++ GK+R F FV
Sbjct: 201 ERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 260
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
P A+ AV + +E++ G+ + V A+K K+ Q R L
Sbjct: 261 FEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNL 320
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E EGRS G+GFV F+ EEA A++ ++
Sbjct: 321 YVKNLDDTIDDERLRKEFTPFGTITSAKVMME--EGRSKGFGFVCFSQPEEATKAVTEMN 378
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 379 GRIVGSKPLYVALAQRKED 397
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 33/187 (17%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASP---------- 129
LYV NL + A + F+ G V+ + + + ++ +A+V P
Sbjct: 13 LYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGDGG 72
Query: 130 ------------EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+ A+ A++ + + GR IR+ ++++ P ++S +
Sbjct: 73 SGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQR--DPSLRKSGVG-------NV 123
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
++ NL + + + + FSA N +S KV + G S GYGFV F T+E A +I ++
Sbjct: 124 FIKNLDKNIDNKAMYDTFSAFGNILSCKVT-QDESGASKGYGFVHFETEEAANKSIEKVN 182
Query: 238 GKELMGR 244
G L G+
Sbjct: 183 GMLLNGK 189
>gi|258564845|ref|XP_002583167.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906868|gb|EEP81269.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1297
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 19/201 (9%)
Query: 62 DTTVETKPEQTQKQNI------------RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
DT + + QT+ Q + + L+V N P A I+ +F P G + +V
Sbjct: 868 DTKEDAEAAQTRDQKVLEGRTISVQLETKATLFVTNFPPEADEAYIRRIFGPYGEIAEVR 927
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
K +R F +V AS +A AA+ + D + V + K P +R A +
Sbjct: 928 FPSLKFNTHRRFCYVQFASTVDAHAAL-ELDQEPVGENL---HLVVKISDPS-KRQARSG 982
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
A E ++++SNL WK L E F A F V + +G S G+GFV+F+T E A
Sbjct: 983 AFEEGREIHISNLDWKATEDDLVELFMA-FGKVEVARIPTKADGGSKGFGFVAFSTPETA 1041
Query: 230 EAAISSLDGKELMGRPLRLKF 250
AA+ ++D KE RPLR+K
Sbjct: 1042 NAAL-AMDQKEFRSRPLRVKL 1061
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R++++ NL W + ++ LF G V I G ++ F FV ++PE A AA+
Sbjct: 988 REIHISNLDWKATEDDLVELFMAFGKVEVARIPTKADGGSKGFGFVAFSTPETANAAL-A 1046
Query: 139 FDTQEVSGRIIRVEFA 154
D +E R +RV+ +
Sbjct: 1047 MDQKEFRSRPLRVKLS 1062
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 83 VFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142
V NLP + +I+ F CG + +++I G N A V + E+A+AA + D +
Sbjct: 826 VKNLPKDVPILKIRQFFRDCGKINSLKLIPADG--NSASAIVEFDTKEDAEAAQTR-DQK 882
Query: 143 EVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPV 202
+ GR I V+ ET+ L+V+N + ++R F + +
Sbjct: 883 VLEGRTISVQL------------------ETKATLFVTNFPPEADEAYIRRIFGP-YGEI 923
Query: 203 SSKVVFES---NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
++V F S N R + +V FA+ +A AA+ LD +E +G L L
Sbjct: 924 -AEVRFPSLKFNTHRR--FCYVQFASTVDAHAAL-ELD-QEPVGENLHL 967
>gi|209882353|ref|XP_002142613.1| RNA recognition domain-containing protein [Cryptosporidium muris
RN66]
gi|209558219|gb|EEA08264.1| RNA recognition domain-containing protein [Cryptosporidium muris
RN66]
Length = 199
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 21/193 (10%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++YV NLPW ++K+ G+VV ++ + + G++R V ++PEEAQ A+ +
Sbjct: 8 RVYVGNLPWKAKWHDLKDHMRQAGSVVRADVFEDEVGRSRGCGVVEYSAPEEAQRAIAEL 67
Query: 140 DTQEVSGRIIRV---------EFAKKFKK--------PRPQRSASAPARETQHK---LYV 179
+ + R+I V F +K K R + A P + +H+ ++V
Sbjct: 68 NNSTILDRLIFVREDREEETNRFGRKSGKWGHNRGHSSRTRTHAPRPPLKDEHRGRQVFV 127
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
+NL+WK L + FS P+ S VF ++GRS G V F A+ A+ L+ +
Sbjct: 128 TNLAWKTTRDDLAKVFS-EIGPLDSCEVFYFDDGRSRGIATVVFKDLSHAQLAVEKLNDR 186
Query: 240 ELMGRPLRLKFGQ 252
E+ GR + ++ Q
Sbjct: 187 EVDGREILVRLDQ 199
>gi|388578824|gb|EIM19158.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 430
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 7/181 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++V L W+ +K+ F G V + + + G++R F +V S E A A++Q
Sbjct: 206 QIFVGQLSWNIDDDWLKSEFEQLGPVKTARVQLDRQSGRSRGFGYVEFESHELAVKAMDQ 265
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASA---PARETQHKLYVSNLSWKVRSTHLREFF 195
F +E+ GR +RV+ + + P P++ A + + + L++ NLS+ + EFF
Sbjct: 266 FAGKEIDGRPVRVDLSVP-RAPNPEKRAKSFGDQRSDPSNTLFIGNLSFNTNEDRVWEFF 324
Query: 196 SANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F V S +V + G G+G+VSFA + A+AAI G EL GR +RL F
Sbjct: 325 -GEFGSVESVRVPTDRETGAPKGFGYVSFADVDTAKAAIDGAAGSELDGRVIRLDFSTPK 383
Query: 255 D 255
D
Sbjct: 384 D 384
>gi|241947949|ref|XP_002416697.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
gi|223640035|emb|CAX44279.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
Length = 423
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ + +K F G V+ +I + GK+R + +V + A+ A+ +
Sbjct: 198 LFVGRLSWNIDDSWLKREFEHIGGVISARVIMERATGKSRGYGYVDFETKSAAEKALEEM 257
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE-------TQHKLYVSNLSWKVRSTHLR 192
+E+ GR I ++ + KP RS + A++ L+V NLS+ +L
Sbjct: 258 QGKEIDGRPINLDMSTG--KPHASRSTNDRAKQYGDSQSALSDTLFVGNLSFNANRDNLF 315
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F N +S +V + + G+G+V F++ +EA+AA+ +L+G+ + GRP RL F
Sbjct: 316 TVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRPCRLDFST 375
Query: 253 KNDD 256
D+
Sbjct: 376 PRDN 379
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++S A E L+V LSW + + L+ F +S++V+ E G+S GYG+V
Sbjct: 184 KKSKPAAVNEEPATLFVGRLSWNIDDSWLKREFEHIGGVISARVIMERATGKSRGYGYVD 243
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES-NKEEEDVSEDQSA 273
F TK AE A+ + GKE+ GRP+ L S S N + + QSA
Sbjct: 244 FETKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASRSTNDRAKQYGDSQSA 295
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +F G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 498 VYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMN 557
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E +G+ I V E + F++ + +RS +R LYV NL +
Sbjct: 558 GKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERS----SRYQGVNLYVKNLDDSIDDE 613
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F+ EEA A+S ++GK + +PL +
Sbjct: 614 RLRKAFSPFGTITSAKVMMEG--GHSRGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVA 671
Query: 250 FGQKNDD 256
Q+ D
Sbjct: 672 LAQRKRD 678
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V +A+ +
Sbjct: 318 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLETM 377
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 378 NLDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLEKSIDNKALYKTFSAFG 428
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KV+ S+E S GYGFV F ++ A+ AI ++G L
Sbjct: 429 NILSCKVI--SDENGSKGYGFVHFENQQAADKAIEKMNGVRL 468
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE + ++
Sbjct: 318 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLETM 377
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 378 NLDVIKGKPVRIMWSQRDPSLRKSG 402
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHK-------- 176
+ E A+AAV + +++ G+ + V A+ KK Q+ E + K
Sbjct: 230 FETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGV 287
Query: 177 -LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV NL + LR FS N S+KV+ + EGRS G+GFV F EA A++
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTE 346
Query: 236 LDGKELMGRPLRLKFGQKNDD 256
L+G+ + +PL + Q+ ++
Sbjct: 347 LNGRVVGSKPLYVALAQRKEE 367
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLVRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + +G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSG 88
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 14/180 (7%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEA 132
+++ + L V LP + + E+K+LF+ G V ++I+ K G++ + FV PE+A
Sbjct: 22 QEDSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDA 81
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+ A+N F+ + + I+V FA RP A A LYVS LS + L
Sbjct: 82 EKAINTFNGLRLQNKTIKVSFA------RPSSDAIKGA-----NLYVSGLSKSMTQQDLE 130
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
F+A ++S+++ ++ G S G GF+ F + EAE AI L+G G P+ +KF
Sbjct: 131 NLFNAYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNGTTPKGASEPITVKF 190
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 50/92 (54%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
S + +++ L V+ L + ++ FS+ + S K++ + G+S GYGFV++
Sbjct: 17 SIGSGQEDSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYH 76
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
E+AE AI++ +G L + +++ F + + D
Sbjct: 77 RPEDAEKAINTFNGLRLQNKTIKVSFARPSSD 108
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + LF P G V V++IK + K + F FVTM + +EA AV
Sbjct: 257 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSL 316
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 317 NGYTLGNRVLQVSF 330
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 50/250 (20%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGK 117
LQ+ T++ + I+ LYV L S + +++NLF G ++ I+ + G
Sbjct: 93 LQNKTIKVSFARPSSDAIKGANLYVSGLSKSMTQQDLENLFNAYGQIITSRILCDNITGL 152
Query: 118 NRNFAFVTMASPEEAQAAVNQFD--TQEVSGRIIRVEFAKK--------------FKKPR 161
++ F+ EA+ A+ Q + T + + I V+FA + P
Sbjct: 153 SKGVGFIRFDQRSEAERAIQQLNGTTPKGASEPITVKFANNPSNNINKAIPPLAAYLTPT 212
Query: 162 P--QRSASAPARETQHK---------------------------LYVSNLSWKVRSTHLR 192
P +R P + ++V NL+ + L
Sbjct: 213 PNLRRFPPGPIHPLSGRFSRYSPLTGDLGSSVLSANAINGSGWCIFVYNLAPETEENVLW 272
Query: 193 EFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
+ F F V S KV+ + + G+GFV+ +EA A+ SL+G L R L++ F
Sbjct: 273 QLFGP-FGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSLNGYTLGNRVLQVSF- 330
Query: 252 QKNDDVSESN 261
+ N+ S++N
Sbjct: 331 KTNNTKSKAN 340
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + E+KN+FA G + +++ GK++ F FV S ++A AV +
Sbjct: 193 VFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR------ETQHK-----LYVSNLSWKVRST 189
+++ G V A+K + +R R ET K LY+ NL +
Sbjct: 253 GKKIDGEEWYVGKAQK----KSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS +F ++S V G S G GFV+F+T EEA A++ ++GK L+ +PL +
Sbjct: 309 KLKELFS-DFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVA 367
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 368 LAQRKEE 374
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ ++F G VV V + + + + + +V ++P++A A++
Sbjct: 14 LYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 73
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IR+ ++ + P ++S A +++ NL + L + FS+
Sbjct: 74 NFTPLNNKPIRIMYSHR--DPSIRKSGMA-------NIFIKNLDKGIDHKALHDTFSSFG 124
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV +++ G+S GYGFV F ++E A+ AI L+G
Sbjct: 125 NILSCKVATDAS-GQSKGYGFVQFDSEEAAQNAIDKLNG 162
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + V + L + F+ VS +V + + RS GYG+V+++ ++A A+ L
Sbjct: 14 LYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 73
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L +P+R+ + ++ + +S
Sbjct: 74 NFTPLNNKPIRIMYSHRDPSIRKSG 98
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ+ K+ + + LY+ NL S + ++K LF+ G + ++++ G +R FV
Sbjct: 281 EQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVA 340
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
++PEEA A+ + + + + + + V A++
Sbjct: 341 FSTPEEASRALAEMNGKMLISKPLYVALAQR 371
>gi|350296577|gb|EGZ77554.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 356
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W A + F C ++ + G++R F +V A+ E+AQ A +
Sbjct: 110 LWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQKAYDAK 169
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+ GR +R++FA K +PQ A+ R +H L+V N+ + +
Sbjct: 170 SGALLEGREMRLDFAAKDAGNKPQDKAAN--RAAKHGDTISPESDTLFVGNMPFSADESV 227
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ +FF++ + S ++ + GR G+ +V+F + E+A+ A L+G +L GRP+RL +
Sbjct: 228 VSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLDY 287
Query: 251 GQKNDD 256
+ D+
Sbjct: 288 AKPRDN 293
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P+++ + + + L+V NL W + L F S++VV + GRS G+G+V
Sbjct: 95 PKKAKTEEVADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYV 154
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
FAT E+A+ A + G L GR +RL F K+
Sbjct: 155 DFATNEQAQKAYDAKSGALLEGREMRLDFAAKD 187
>gi|336464486|gb|EGO52726.1| hypothetical protein NEUTE1DRAFT_91358 [Neurospora tetrasperma FGSC
2508]
Length = 356
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W A + F C ++ + G++R F +V A+ E+AQ A +
Sbjct: 110 LWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQKAYDAK 169
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+ GR +R++FA K +PQ A+ R +H L+V N+ + +
Sbjct: 170 SGALLEGREMRLDFAAKDAGNKPQDKAAN--RAAKHGDTISPESDTLFVGNMPFSADESV 227
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ +FF++ + S ++ + GR G+ +V+F + E+A+ A L+G +L GRP+RL +
Sbjct: 228 VSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLDY 287
Query: 251 GQKNDD 256
+ D+
Sbjct: 288 AKPRDN 293
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P+++ + + + L+V NL W + L F S++VV + GRS G+G+V
Sbjct: 95 PKKAKTEEVADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYV 154
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
FAT E+A+ A + G L GR +RL F K+
Sbjct: 155 DFATNEQAQKAYDAKSGALLEGREMRLDFAAKD 187
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 9/173 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K +F+ G + + ++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMN 179
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ + V A+K K+ Q R LYV NL + LR+
Sbjct: 180 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 239
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL
Sbjct: 240 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 86
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E FS +
Sbjct: 87 GMLLNDRKV---FVGRFK-SRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFS-KY 141
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V G+S G+GFVSF E+A+ A+ ++GKE+ G+ + + QK
Sbjct: 142 GPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQK 195
>gi|384483165|gb|EIE75345.1| hypothetical protein RO3G_00049 [Rhizopus delemar RA 99-880]
Length = 366
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++ + + + +++ F CG + DV I I GKNR F + A+ E AAV
Sbjct: 141 IWCGGISFEATADDVREFFGECGEIKDVRIRIDEATGKNRGFCHIDFATQEAKDAAV-AL 199
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK----VRSTHLREFF 195
E GR IR++ A KK + S PA T+ K++V+NL+ T L E F
Sbjct: 200 SGNEFLGRRIRIDGADGGKKT----NTSGPASATK-KVFVANLNRDYDEDAHRTALTEAF 254
Query: 196 SANFNPVSSKVVFESNE--GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F + + N G G G++ F T E+AEAA+ ++G E+ GRPLR F
Sbjct: 255 Q-EFGTIVGDIRLPYNRESGALKGIGYIEFETTEQAEAAVKGMNGVEINGRPLRTDFSGD 313
Query: 254 ND 255
ND
Sbjct: 314 ND 315
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
A E + ++ +S++ + +REFF ++ + G++ G+ + FAT+E
Sbjct: 132 AAKTEENYTIWCGGISFEATADDVREFFGECGEIKDVRIRIDEATGKNRGFCHIDFATQE 191
Query: 228 EAEAAISSLDGKELMGRPLRL 248
+AA+ +L G E +GR +R+
Sbjct: 192 AKDAAV-ALSGNEFLGRRIRI 211
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + G ++ F FV E+AQ AV + +
Sbjct: 262 VYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMN 321
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 322 GKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRK 381
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 382 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQR 439
Query: 254 NDD 256
++
Sbjct: 440 KEE 442
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + + A+ A+++ +
Sbjct: 170 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMN 228
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+ F F
Sbjct: 229 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLF-GKF 283
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD-VS 258
P S V G S G+GFV+F E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 284 GPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQT 343
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 344 ELKRKFEQLKQDR 356
>gi|168988195|gb|ACA35266.1| nuclear transport family protein [Cucumis sativus]
Length = 565
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 146 GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK 205
GRI+RV F+ K P+P+ ET++KL+V NLSW V S L + F N V ++
Sbjct: 2 GRILRVNFSDK---PKPKEPLYP---ETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGAR 55
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
V+++ G+S GYGFVS++TK E E A+ +++ EL GR +R+
Sbjct: 56 VIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRV 98
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTM 126
KP++ KL+V NL WS + + F G VV +I + GK+R + FV+
Sbjct: 14 KPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSY 73
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRV 151
++ E + A+ + E+ GR+IRV
Sbjct: 74 STKSEMETALETINELELEGRVIRV 98
>gi|298713553|emb|CBJ27081.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 437
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
K+YV NL W ++K+ G+V V++ + GG+++ A V +P+EA +A+
Sbjct: 263 KVYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDL 322
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
E+ GR+I V ++ +R +++VSN+SW+ L++ F
Sbjct: 323 HDTELLGRLIFVREDREEGPIGSKRIGQLHEGAEGRQVHVSNVSWETGWQSLKDHFK-QC 381
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
V + E +GRS GY V F ++++A AI+ LDG +L GR + ++
Sbjct: 382 GRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVR 431
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++YV NL W+ + E+K+L CG E+ G++R + VT S A A+++
Sbjct: 66 RVYVGNLAWTVTWKELKDLMGTCGPC-KAEVPCGADGRSRGYGLVTFTSAAGASDAIDRL 124
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH----------KLYVSNLSWKVRST 189
++ GR I + ++ + K++VSNL++ V+
Sbjct: 125 QDTDLMGRPIYLREDREEQGFGGGGGFGGGGGGGGGGFNGGGNANCKVFVSNLAYDVQWQ 184
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ N V VF +GRS G G V F+ EA AIS L ELMGRP++++
Sbjct: 185 DLKDHMK-NAGSVIRADVFVGPDGRSKGLGTVEFSKPYEARNAISQLSETELMGRPIQVR 243
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 145 SGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS 204
+GR R + + +++P P+ S + +++YV NL+W V L++ P +
Sbjct: 38 TGRASRQQQTQPYRQPAPKGSVGGG---SNNRVYVGNLAWTVTWKELKDLM-GTCGPCKA 93
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
+V ++ GRS GYG V+F + A AI L +LMGRP+ L+
Sbjct: 94 EVPCGAD-GRSRGYGLVTFTSAAGASDAIDRLQDTDLMGRPIYLR 137
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R+++V N+ W +K+ F CG V VEI + G+++ +A V S ++A A+NQ
Sbjct: 358 RQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQ 417
Query: 139 FDTQEVSGRIIRV 151
D ++ GR I V
Sbjct: 418 LDGTDLDGRRIGV 430
>gi|260940561|ref|XP_002614580.1| hypothetical protein CLUG_05358 [Clavispora lusitaniae ATCC 42720]
gi|238851766|gb|EEQ41230.1| hypothetical protein CLUG_05358 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++V NLP+S + +K+L G+VV +++ +K GK+R F V +P+EA AAV +F
Sbjct: 137 EVFVGNLPFSVTWQTLKDLMRSVGSVVRADVMTNKWGKSRGFGTVVFETPDEAAAAVEKF 196
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSAS------APARETQHKLYVSNLSWKVRSTHLRE 193
++ GR I + + + P+P S E +Y +NL + T L E
Sbjct: 197 QGYQMEGRAIDIRPGRD-QAPKPVSKNSDLTEGVVGNGEVGPAIYAANLPYITSQTDLFE 255
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F V +++ + + +GR +G V F + E A +AI +L G GR L + + +K
Sbjct: 256 LFETIGRVVRAEIQYNA-KGRPSGNAVVEFESAELATSAIQNLHGYNYGGRDLHISYARK 314
Query: 254 NDDVSESN 261
+ S N
Sbjct: 315 PNQTSNHN 322
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMA 127
PE K N L V LP + + +K LF+ G V+ ++IK K G + + FV
Sbjct: 18 PETKAKTN----LIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYG 73
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVR 187
S EEA+ A+ + + + + ++V +A RP A A +YV+NL ++
Sbjct: 74 SAEEAEHAIQKMNGTTLESKTLKVSYA------RPSSVAIKNAN-----VYVANLPPQLS 122
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RP 245
T L F ++SKV+ + + G G GFV F +AE AI++L+GK+L+G +P
Sbjct: 123 LTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALNGKQLVGGTQP 182
Query: 246 LRLKF 250
L +KF
Sbjct: 183 LLVKF 187
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 160 PRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
P PQ P + + L V+ L + L++ FS +S K++ + + G S GYG
Sbjct: 13 PGPQN----PETKAKTNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYG 68
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ------KNDDVSESN 261
FV++ + EEAE AI ++G L + L++ + + KN +V +N
Sbjct: 69 FVNYGSAEEAEHAIQKMNGTTLESKTLKVSYARPSSVAIKNANVYVAN 116
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NLP + + LF+P G + V +I+ K G + + FV M S E+A +A+
Sbjct: 314 VFVYNLPETCQDFLLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVNMKSYEDACSAIMTL 373
Query: 140 DTQEVSGRIIRVEFAKKFK 158
+ G+ ++V F + K
Sbjct: 374 NGYVHDGKTLQVSFKNQKK 392
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 13/182 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F+ G + V+++ GK++ F FV+ S E A+ AV + +
Sbjct: 187 VYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMN 246
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH---------KLYVSNLSWKVRSTHL 191
++++G+++ V A+ KK Q + +H KLY+ NL + L
Sbjct: 247 GKDINGQLLFVGRAQ--KKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEKL 304
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
R FS+ F + S+V EGRS G+G + F++ EEA A++ ++G+ L +PL +
Sbjct: 305 RREFSS-FGSI-SRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALA 362
Query: 252 QK 253
QK
Sbjct: 363 QK 364
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G +R +AFV + A A+
Sbjct: 95 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAI---- 149
Query: 141 TQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G +++ F +FK R R A + + +Y+ N ++ L+E FS
Sbjct: 150 -EEMNGTLLKDCRLFVGRFK-SRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSK 207
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++GK++ G+ L + QK
Sbjct: 208 YGKTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQK 262
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L + + F+ G V+ + G +A+V +AQ A++ +
Sbjct: 12 LYVGDLHADVTEDLLFKKFSAVGPVLSITCHPRSLG----YAYVNFLQLADAQKALDTMN 67
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ G+ IR+ ++++ R + +++ NL + + L E FSA
Sbjct: 68 FDLIKGKSIRLMWSQRDAYLRKSGIGN---------VFIKNLDRSIDNKTLYEHFSAFGK 118
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+SSKV+ S++ S GY FV F + A+ AI ++G L + RL G+
Sbjct: 119 ILSSKVM--SDDHGSRGYAFVHFQNQIAADRAIEEMNGTLL--KDCRLFVGR 166
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
+ + ++ Q +++ ++V NLP E+ + G V ++K + G ++ F F+
Sbjct: 188 QKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFIN 247
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--------- 176
E A V + +E+ G+++ A+K + +R A + + K
Sbjct: 248 FKDAECAAKCVEALNDKEIGGKVLYAGRAQK----KTEREAMLRQKVEESKQERYLKYQG 303
Query: 177 --LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
LYV NL+ +V LR+ F++ S KV+ +++ G+S G+GFV F + +EA A++
Sbjct: 304 MNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTS-GKSKGFGFVCFTSHDEATRAVT 362
Query: 235 SLDGKELMGRPLRLKFGQKND 255
++GK + G+PL + Q+ D
Sbjct: 363 EMNGKMVKGKPLYVALAQRKD 383
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 10/174 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ G ++ + FV A A+ +
Sbjct: 114 IFIKNLDKSIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVN 173
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+E+ G+I+ V F K+ +P+ ++ ++V NL ++ L + + F
Sbjct: 174 QKEIEGKIVYVGPFQKRADRPQ--------GKDVYTNVFVKNLPAELGDDELSKM-ATEF 224
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
V+S VV + +G S G+GF++F E A + +L+ KE+ G+ L QK
Sbjct: 225 GEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQK 278
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 14/180 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS---PEEAQAAV 136
LYV +L + A++ LF+ G V + + + ++ +A+V S P+ A+ A+
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERAM 82
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ ++G+ +R+ ++ + P ++S +++ NL + + L + FS
Sbjct: 83 ETLNYHVLNGKPMRIMWS--HRDPSARKSGVG-------NIFIKNLDKSIDAKALHDTFS 133
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
A +S KV ++N G S GYGFV F + A+ AI +++ KE+ G+ + + QK D
Sbjct: 134 AFGKILSCKVATDAN-GVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRAD 192
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL +++LF CGT+ +++K GK++ F FV S +EA AV + +
Sbjct: 306 LYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMN 365
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ V G+ + V A++ R Q A+ R
Sbjct: 366 GKMVKGKPLYVALAQRKDVRRAQLEANVQNR 396
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATK---EE 228
T LYV +L V L E FS+ PV+S +V ++ RS GY +V++ + +
Sbjct: 19 TNSSLYVGDLEKDVTEAQLFELFSS-VGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQA 77
Query: 229 AEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
AE A+ +L+ L G+P+R+ + ++ +S
Sbjct: 78 AERAMETLNYHVLNGKPMRIMWSHRDPSARKSG 110
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R++Y+ N+P + + ++ L G V V K+ G ++R F F TM S E+A A V +
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVMYDKYSG-RSRRFGFATMKSVEDANAVVEK 134
Query: 139 FD-------TQEVSGRIIRVEFAKKFKKPRPQ----RSASAPARETQHKLYVSNLSWKVR 187
+ +Q V GR I+V +K P +S + ++ +K+YV NL+ V
Sbjct: 135 LNGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVT 194
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L FS VS+KV +S G+GFV+F+++E+ EAAI +L+ L G+ +R
Sbjct: 195 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 254
>gi|453087053|gb|EMF15094.1| splicing factor, CC1-like protein [Mycosphaerella populorum SO2202]
Length = 622
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 8/188 (4%)
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMA 127
PE T + RR ++V L E+++ F G VVD +I+K + G+++ +V
Sbjct: 226 PEPTDDERDRRTVFVQQLAARLRSRELRDFFEQVGPVVDAQIVKDRVSGRSKGVGYVEFK 285
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ----HKLYVSNLS 183
E Q A+ Q++ G I + + +K R R+ A ++ H+LYV N+
Sbjct: 286 DEESVQKAIG-LTGQKLLGIPIIAQLTEA-EKNRQARTTEGTATQSNGVPFHRLYVGNIH 343
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ + L+ F F + + + GRS GYGFV F +A+ A+ ++G EL G
Sbjct: 344 FSITEADLKNVFEP-FGELEFAQLQKEENGRSKGYGFVQFIDPAQAKEALEKMNGFELAG 402
Query: 244 RPLRLKFG 251
RP+R+ G
Sbjct: 403 RPIRVGLG 410
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL S + E+ F GT+ I++ GK+R F FV +P++A AV +
Sbjct: 214 VYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 273
Query: 141 TQEVSGRIIRVEFAKKFK------KPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLRE 193
++V + V A+K K R ++S A + Q LY+ NL + L+E
Sbjct: 274 GKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKE 333
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A + ++S V G G GFV+F+T EEA A+ ++GK + G+PL + Q+
Sbjct: 334 MF-AEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQR 392
Query: 254 NDD 256
+D
Sbjct: 393 KED 395
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ +I G ++ + FV S E AQ A+++ +
Sbjct: 123 IFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLN 182
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q +A ++ + +YV NLS L +FF +
Sbjct: 183 GMLINDKQVYVGHFLRK------QDRENALSKTKFNNVYVKNLSESTTDEELMKFF-GEY 235
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S V+ +G+S +GFV+F ++A A+ L+GK++
Sbjct: 236 GTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKV 277
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQ 133
Q + LYV +L + + A++ +LF VV V + + ++ + +V ++P++A
Sbjct: 29 QFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAA 88
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A++ + ++ R IR+ ++ + P ++S +A +++ NL + L +
Sbjct: 89 RALDVLNFTPLNNRPIRIMYSH--RDPSLRKSGTA-------NIFIKNLDKAIDHKALHD 139
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
FS+ +S K+ +++ G S GYGFV F ++E A+ AI L+G
Sbjct: 140 TFSSFGLILSCKIATDAS-GLSKGYGFVQFDSEESAQNAIDKLNG 183
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 149 IRVEFAKKFKKPRPQRSASAPARETQH---KLYVSNLSWKVRSTHLREFFSANFNPVSSK 205
I+V+ P P A+AP Q LYV +L V L + F+ VS +
Sbjct: 4 IQVQHQSPVSAPPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVR 63
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
V + RS GYG+V+F+ ++A A+ L+ L RP+R+ + ++ + +S
Sbjct: 64 VCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSG 119
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 18/175 (10%)
Query: 94 EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-GRIIRV- 151
++K++F GT+ +++ GK+R F FV P+ A+ AV + + +EV+ G+ + V
Sbjct: 178 KLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVG 237
Query: 152 ----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNP 201
E +KF++ + +R R LYV NL + LR+ F+
Sbjct: 238 RAQKKAERQQELKRKFEQLKLERLN----RYQGVNLYVKNLDDSIDDERLRKEFAPFGTI 293
Query: 202 VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
S+KV+ E EGRS G+GFV F+ EEA A++ ++G+ ++ +PL + Q+ +D
Sbjct: 294 TSAKVMME--EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKED 346
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S ++ FAP GT+ +++ + G+++ F FV ++PEEA AV
Sbjct: 269 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVT--- 324
Query: 141 TQEVSGRII 149
E++GRII
Sbjct: 325 --EMNGRII 331
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K +F G + V+++ GK+R F FV+ E+A AV + +
Sbjct: 193 VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEIN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E++G+ + V E +KF+ + +R +R LY+ NL +
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFELLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + + A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N ++ L+E F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF E+A A+ ++G EL G+ + + QK
Sbjct: 216 KTLSVKVMTDSS-GKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQK 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V + P +A+ A++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVVKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T++ A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F+ +AE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSG 97
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 36/209 (17%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R+L+V NLP++ ++K+LF G+V+ +I ++ G++R V M+S +EA A+
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQM 238
Query: 139 FDTQEVSGRIIRVE---FAKKFKKPR----------------------PQRSASAPARET 173
+ GR + V FA KP P A+ +
Sbjct: 239 LHNTDFMGRTLEVRLDRFAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQVEDL 298
Query: 174 QHK----------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+ +YV NL W +L + F+ + + +++ +E GRS G+G V F
Sbjct: 299 VYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPT-GRSKGFGVVQF 357
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +A ++I L+G GRPL+L +
Sbjct: 358 ENENDAASSIEKLNGYRYGGRPLQLSYAH 386
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 10/207 (4%)
Query: 50 RNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
R L T +D + + TQ++ R++YV NL + E+K G V++ E
Sbjct: 51 RGLHFDGEHTERDPHLGNGQKYTQQE---RRVYVGNLSYQVRWFELKEFMGQVGNVLNCE 107
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV----EFAKKFKKPRPQRS 165
I+ G ++ A + ++ EEA+ A+ Q+ GR++ + E +F S
Sbjct: 108 ILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPS 167
Query: 166 ASAPARETQ--HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
AS+ ++++ +L+V NL + VR L++ F + + + + + EGRS G G V
Sbjct: 168 ASSNGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQM-NQEGRSRGIGIVVM 226
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +EA AI L + MGR L ++
Sbjct: 227 SSMKEAMHAIQMLHNTDFMGRTLEVRL 253
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL S++ ++K LF G + V+I+K + G ++ F FV S + A AV + +
Sbjct: 202 VYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLN 261
Query: 141 TQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHKL-----------YVSNLSWKVRS 188
+ G+++ V A+K + +R A A Q KL Y+ N+ +
Sbjct: 262 GSTTNDGKVLFVGRAQK----KSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNE 317
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E FS F ++S V GRS G GFV+F T EEA AI ++GK + +P+ +
Sbjct: 318 EKLKELFS-EFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYV 376
Query: 249 KFGQKNDD 256
Q+ ++
Sbjct: 377 SVAQRKEE 384
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + A++ +LF+ V+ V + + + ++ + +V ++ +A A+
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IR+ F+ + P +++ A L++ NL + + L E FS
Sbjct: 87 NYVPLNGKPIRIMFSHR--DPLIRKTGFA-------NLFIKNLETSIDNKALHETFSVFG 137
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
N +S KV +SN G S G+GFV F + A+ AI LDG+
Sbjct: 138 NVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIEKLDGR 176
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 50/90 (55%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ N+ S + ++K LF+ GT+ +++ G+++ FV +PEEA A+++ +
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMN 365
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
+ + + + V A++ ++ + Q A PA
Sbjct: 366 GKIIGQKPVYVSVAQRKEERKAQLQAHFPA 395
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS +S +V + S GYG+V+++ +A A+ +L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 237 DGKELMGRPLRLKFGQKN 254
+ L G+P+R+ F ++
Sbjct: 87 NYVPLNGKPIRIMFSHRD 104
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F+ G + V++++ GK++ F FV+ S E A+ AV + +
Sbjct: 192 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+++ V A+K K+ Q R KLY+ NL + LR
Sbjct: 252 GKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRR 311
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS+ F + S+V EGRS G+G + F++ EEA A++ ++G+ L +PL + QK
Sbjct: 312 EFSS-FGSI-SRVKVMQEEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQK 369
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G +R +AFV + A A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAI---- 154
Query: 141 TQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G +++ F +FK R R A + + +Y+ N + L+E FS
Sbjct: 155 -EEMNGALLKDCRLFVGRFK-NRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSK 212
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++GK++ G+ L + QK
Sbjct: 213 YGKTLSVKVMRDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQK 267
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FSA
Sbjct: 72 NFDLIKGKSIRLMWS--------QRDAYLR-KSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+SSKV+ S++ S GY FV F + A+ AI ++G
Sbjct: 123 KILSSKVM--SDDQGSRGYAFVHFQNQIAADRAIEEMNG 159
>gi|281212020|gb|EFA86181.1| hypothetical protein PPL_00743 [Polysphondylium pallidum PN500]
Length = 602
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTMASPEEAQAAVNQF 139
L + N+P FS +++++FA G +V +++ +G KN + FV A+PE A AA+ Q
Sbjct: 155 LIINNIPKHFSSEDLRDMFANFGEIVSYKVVTKRGNSKNMGYGFVKYATPEGATAAIEQM 214
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + ++V +A + ++ T LYV+ L +V L E FS
Sbjct: 215 NGHSIDLKFLKVSYA-----------TATSSQSTHANLYVNRLEPQVTKEDLAEAFSKFG 263
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL--MGRPLRLKFGQKNDD 256
V +K++ + N G S GFV F+ + A A+S+++G + P+ +KF + D+
Sbjct: 264 EVVETKILVDPNTGSSRCVGFVHFSARRNALTALSAMNGANIPCQTGPIYVKFADQKDE 322
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNP-VSSKVVFESNEGRSAGYGFVSFATKE 227
P + L ++N+ S LR+ F ANF VS KVV + ++ GYGFV +AT E
Sbjct: 147 PDLDALTNLIINNIPKHFSSEDLRDMF-ANFGEIVSYKVVTKRGNSKNMGYGFVKYATPE 205
Query: 228 EAEAAISSLDGKELMGRPLRLKF 250
A AAI ++G + + L++ +
Sbjct: 206 GATAAIEQMNGHSIDLKFLKVSY 228
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R++Y+ N+P + + ++ L G V V+++ K G++R F F TM S E+A A V
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 138 QFDTQEVSGRIIRVEFAKK-FKKPRPQ----RSASAPARETQHKLYVSNLSWKVRSTHLR 192
+ + V GR I+V +K P +S + ++ +K+YV NL+ V L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSSPDLSLLQSEDSAFVDSPYKVYVGNLAKTVTKEMLE 195
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
FS VS+KV +S G+GFV+F+++E+ EAAI +L+ +P L
Sbjct: 196 NLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAILALNNSAKPSQPEMLSL 253
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P+ E ++Y+ N+ V + L + + +V+++ GRS +GF + + E+
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 229 AEAAISSLDGKELMGRPLRLKFGQK 253
A A + L+G + GR +++ +K
Sbjct: 130 ANAVVEKLNGNTVEGREIKVNITEK 154
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+ +K+ R L+V N+P+S S E++ +F D+ I G N+ A+V ++
Sbjct: 367 ENKKERDSRTLFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFSTEA 423
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS--APARETQHKLYVSNLSWKVRS 188
EA A+ + E+ GR + V+F + + Q S PA +++ L V+NLS+
Sbjct: 424 EANKALEEKQGAEIEGRSLFVDFTGE----KSQNSGGRRGPAGDSKV-LVVNNLSYSATE 478
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LRE F ++ + N+GR+ G+ FV F++ E+A+ A+ S + E+ GR +RL
Sbjct: 479 DSLREVFEK-----ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 533
Query: 249 KF 250
+F
Sbjct: 534 EF 535
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 31/267 (11%)
Query: 10 SIFLTNHPFSFSC-----LFPKLPHCIKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDT 63
++F+ N P+S S +F + S ++Y F T + Q
Sbjct: 376 TLFVKNIPYSTSAEELQEIFENAKDIRIPTGNDGSNKGIAYVEFSTEAEANKALEEKQGA 435
Query: 64 TVETKP-------EQTQKQNIRRK-------LYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
+E + E++Q RR L V NL +S + ++ +F ++
Sbjct: 436 EIEGRSLFVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKATSIR--- 492
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
I G+ + FAFV +S E+A+ A++ + EV GR IR+EF++ R S
Sbjct: 493 -IPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQ 551
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
++ L+V LS L+E F + N +++V + + G S G+GFV F++ E+A
Sbjct: 552 SKT----LFVRGLSEDTTEETLKEAFDGSIN---ARIVTDRDTGASKGFGFVDFSSAEDA 604
Query: 230 EAAISSLDGKELMGRPLRLKFGQKNDD 256
+AA +++ E+ G + L F + D
Sbjct: 605 KAAREAMEDGEIDGNKVTLDFAKPKGD 631
>gi|346319566|gb|EGX89167.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Cordyceps militaris CM01]
Length = 450
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 69 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAAERAMQ 128
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S + H ++V +LS +V L + FS
Sbjct: 129 TLNGRRVHQSEIRVNWAY-------QSNTSGKEDTSGHFHIFVGDLSNEVNDEILTQAFS 181
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + EAE A+SS+DG+ L R +R +
Sbjct: 182 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNW 235
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G+++ F FV EEAQ AV +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++GR++ V E +KF++ + +R + R LYV NL +
Sbjct: 253 GKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVS----RYQGVNLYVKNLDDGIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R FV + E A A+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +Y+ N + LRE FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N GRS G+GFV+F EEA+ A++ ++GKE+ GR + + QK
Sbjct: 216 KTLSVKVMMD-NTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPVRIMWSQ--RDPGLRKSGVG-------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N R G+GFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVVCDENGSR--GHGFVHFETQEAATRAIETMNGMLLNDR 166
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSG 97
>gi|296805985|ref|XP_002843812.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
gi|238845114|gb|EEQ34776.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
Length = 318
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ + + A++K + G VV II G +R F +V + EEA+ AVN
Sbjct: 92 VYVGNILFDITAADLKEYASKYGKVVGSRIIYDSRGLSRGFGYVKFENIEEAKKAVNDMH 151
Query: 141 TQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
E GR + V +A+ K+ PQR+ E ++V N++ ++ L E F +
Sbjct: 152 LSEFEGRKLSVNYAQMDLKEETPQRTI-----EPTRTVFVGNIAHQITDRDLHELFDSIP 206
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
N +V + G G+ F E A A +L GK GRPLRL +
Sbjct: 207 NVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEALKGKAPYGRPLRLDY 257
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 155 KKFKKPRPQRS----ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
K F +P +RS + P+ E + +YV N+ + + + L+E+ S V S+++++S
Sbjct: 66 KPFVRPISKRSFGLPPTRPSPEPKSTVYVGNILFDITAADLKEYASKYGKVVGSRIIYDS 125
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
G S G+G+V F EEA+ A++ + E GR L + + Q +
Sbjct: 126 R-GLSRGFGYVKFENIEEAKKAVNDMHLSEFEGRKLSVNYAQMD 168
>gi|213623691|gb|AAI70089.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+ +K+ R L+V N+P+S S E++ +F D+ I G N+ A+V ++
Sbjct: 367 ENKKERDSRTLFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFSTEA 423
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS--APARETQHKLYVSNLSWKVRS 188
EA A+ + E+ GR + V+F + + Q S PA +++ L V+NLS+
Sbjct: 424 EANKALEEKQGAEIEGRSLFVDFTGE----KSQNSGGRRGPAGDSKV-LVVNNLSYSATE 478
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LRE F ++ + N+GR+ G+ FV F++ E+A+ A+ S + E+ GR +RL
Sbjct: 479 DSLREVFEK-----ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 533
Query: 249 KF 250
+F
Sbjct: 534 EF 535
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 31/267 (11%)
Query: 10 SIFLTNHPFSFSC-----LFPKLPHCIKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDT 63
++F+ N P+S S +F + S ++Y F T + Q
Sbjct: 376 TLFVKNIPYSTSAEELQEIFENAKDIRIPTGNDGSNKGIAYVEFSTEAEANKALEEKQGA 435
Query: 64 TVETKP-------EQTQKQNIRRK-------LYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
+E + E++Q RR L V NL +S + ++ +F ++
Sbjct: 436 EIEGRSLFVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKATSIR--- 492
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
I G+ + FAFV +S E+A+ A++ + EV GR IR+EF++ R S
Sbjct: 493 -IPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQ 551
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
++ L+V LS L+E F + N +++V + + G S G+GFV F++ E+A
Sbjct: 552 SKT----LFVRGLSEDTTEETLKEAFDGSIN---ARIVTDRDTGASKGFGFVDFSSSEDA 604
Query: 230 EAAISSLDGKELMGRPLRLKFGQKNDD 256
+AA +++ E+ G + L F + D
Sbjct: 605 KAAREAMEDGEIDGNKVTLDFAKPKGD 631
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+ +K+ R L+V N+P+S S E++ +F D+ I G N+ A+V ++
Sbjct: 368 ENKKERDSRTLFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFSTEA 424
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS--APARETQHKLYVSNLSWKVRS 188
EA A+ + E+ GR + V+F + + Q S PA +++ L V+NLS+
Sbjct: 425 EANKALEEKQGAEIEGRSLFVDFTGE----KSQNSGGRRGPAGDSKV-LVVNNLSYSATE 479
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LRE F ++ + N+GR+ G+ FV F++ E+A+ A+ S + E+ GR +RL
Sbjct: 480 DSLREVFEK-----ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 534
Query: 249 KF 250
+F
Sbjct: 535 EF 536
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 31/267 (11%)
Query: 10 SIFLTNHPFSFSC-----LFPKLPHCIKLLHSSNSTPSLSY-NFPTRNLCLQVCSTLQDT 63
++F+ N P+S S +F + S ++Y F T + Q
Sbjct: 377 TLFVKNIPYSTSAEELQEIFENAKDIRIPTGNDGSNKGIAYVEFSTEAEANKALEEKQGA 436
Query: 64 TVETKP-------EQTQKQNIRRK-------LYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
+E + E++Q RR L V NL +S + ++ +F ++
Sbjct: 437 EIEGRSLFVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKATSIR--- 493
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
I G+ + FAFV +S E+A+ A++ + EV GR IR+EF++ R S
Sbjct: 494 -IPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQ 552
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
++ L+V LS L+E F + N +++V + + G S G+GFV F++ E+A
Sbjct: 553 SKT----LFVRGLSEDTTEETLKEAFDGSIN---ARIVTDRDTGASKGFGFVDFSSAEDA 605
Query: 230 EAAISSLDGKELMGRPLRLKFGQKNDD 256
+AA +++ E+ G + L F + D
Sbjct: 606 KAAREAMEDGEIDGNKVTLDFAKPKGD 632
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ ++ LFA G + +++ G K++ F FV A PEEA+AAV +
Sbjct: 242 VYVKNFGDHYNKETLEKLFAKYGAITSCDVMTSDG-KSKGFGFVAFAQPEEAEAAVQALN 300
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
V G +++ + KK +R A + QHK LYV NL V
Sbjct: 301 DSAVDGSDLKLHVCRAQKKS--ERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDE 358
Query: 190 HLREFFSANFNPVSSKV-------------VFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L++ F N S+KV V GRS G+GFV F EEA A++ +
Sbjct: 359 ALKKQFENFGNITSAKVGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEM 418
Query: 237 DGKELMGRPLRLKFGQKNDD 256
+ K + +PL + Q+ +D
Sbjct: 419 NSKMVCSKPLYVALAQRKED 438
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 101/218 (46%), Gaps = 40/218 (18%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEE-------- 131
LYV +L + + + F+ G V+ + + + + + +A+V P +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADGKSFFQFM 93
Query: 132 --------AQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS 183
A+ A++ + + + G+ +R+ ++++ P +RS + +++ NL
Sbjct: 94 SFLTFLITAERAMDTMNFEALHGKPMRIMWSQR--DPAMRRSGAG-------NIFIKNLD 144
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFE----------SNEGRSAGYGFVSFATKEEAEAAI 233
+ + + + FS N +S KV F +EG S GYGFV F T+E A+ AI
Sbjct: 145 KVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEEAAQNAI 204
Query: 234 SSLDGKELMGRPLRL-KF---GQKNDDVSESNKEEEDV 267
++G L G+ + + KF Q+N ++ E+ K+ +V
Sbjct: 205 QKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNV 242
>gi|85111281|ref|XP_963862.1| hypothetical protein NCU03092 [Neurospora crassa OR74A]
gi|28925605|gb|EAA34626.1| predicted protein [Neurospora crassa OR74A]
Length = 428
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W A + F C ++ + G++R F +V A+ E+AQ A +
Sbjct: 182 LWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQKAYDAK 241
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+ GR +R++FA K +PQ A+ R +H L+V N+ + +
Sbjct: 242 SGALLEGREMRLDFAAKDAGNKPQDKAAN--RAAKHGDTISPESDTLFVGNMPFSADESV 299
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ +FF++ + S ++ + GR G+ +V+F + E+A+ A L+G +L GRP+RL +
Sbjct: 300 VSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLDY 359
Query: 251 GQKNDD 256
+ D+
Sbjct: 360 AKPRDN 365
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P+++ + + + L+V NL W + L F S++VV + GRS G+G+V
Sbjct: 167 PKKAKTEEVADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYV 226
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
FAT E+A+ A + G L GR +RL F K+
Sbjct: 227 DFATNEQAQKAYDAKSGALLEGREMRLDFAAKD 259
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 13/197 (6%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E +K + +YV N F ++K F P G + +++ + GK++ F FV +
Sbjct: 172 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETT 231
Query: 130 EEAQAAVNQFDTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYV 179
E A+AAV + +++ G+ + V A+ KK Q+ E + K LYV
Sbjct: 232 EAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGVNLYV 289
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NL + LR FS N S+KV+ + EGRS G+GFV F + EA A++ L+G+
Sbjct: 290 KNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNPESEATCAVTELNGR 348
Query: 240 ELMGRPLRLKFGQKNDD 256
+ +PL + Q+ ++
Sbjct: 349 VVGSKPLYVALAQRKEE 365
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + I + F+ G ++ ++ + G ++ + FV + E A ++++ +
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++G+ + + KF PR ++ A+ + +YV N + L+EFF +
Sbjct: 152 GMLLNGKKV---YVGKFI-PRKEQELGEKAKLFTN-VYVKNFTEDFDDEKLKEFFEP-YG 205
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-GRPLRLKFGQK 253
++S V +G+S G+GFV+F T E AEAA+ +L+GK++ G+ L + QK
Sbjct: 206 KITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQK 259
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V + IR+ +++ + P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLVRNKPIRIMWSQ--RDPSLRRSGVG-------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + +G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSG 88
>gi|67471742|ref|XP_651783.1| enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
gi|56468563|gb|EAL46397.1| enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
gi|449709038|gb|EMD48384.1| enhancer binding protein, putative [Entamoeba histolytica KU27]
Length = 306
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 12/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK---HKGG--KNRNFAFVTMASPEEAQAA 135
L++ NLP++ + ++K +F+ G VV++ +IK KG KN AF+T+ + EE + A
Sbjct: 115 LFIKNLPFAITEEKLKEMFSKFG-VVEITLIKTHRKKGNVTKNNGIAFITVKTAEEQKKA 173
Query: 136 VNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ + + EV GR I V A KK + + + + P ++ ++V NL + + ++
Sbjct: 174 IAEMNNFEVEGRKITVAAAYKKVENKQTTKKTNEPKSLSETNVFVKNLPFTLTDEGFKKL 233
Query: 195 FSANFNPVSSKVVFESNE----GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
F ++ V + +V N+ RS GYGFV+F T E+ + AI+ +D E+ GR +
Sbjct: 234 FE-KYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIAEMDNFEVEGRKI 288
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 24/187 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L +S V +++N F +V+II G +R FAF+ A+P+EA+ A+ + D
Sbjct: 4 LYVSHLDYSLKVEDVQNAFKTYNPK-EVKIISTPIGYSRGFAFIEFATPQEAEKAL-EMD 61
Query: 141 TQEVSGRIIRVEFA--------------KKFKKPRPQRSASAPARE---TQHKLYVSNLS 183
+ I+V+ A + FK R R R T + L++ NL
Sbjct: 62 RHTIGKMEIKVQKALPKEETTTERKMNRRGFKGKRNTRKRHLVKRTNEVTDNMLFIKNLP 121
Query: 184 WKVRSTHLREFFSANFNPVSSKVV----FESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
+ + L+E FS F V ++ + N ++ G F++ T EE + AI+ ++
Sbjct: 122 FAITEEKLKEMFS-KFGVVEITLIKTHRKKGNVTKNNGIAFITVKTAEEQKKAIAEMNNF 180
Query: 240 ELMGRPL 246
E+ GR +
Sbjct: 181 EVEGRKI 187
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL S + ++KN F G + ++K GK++ F FV + ++A AV
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 137 -NQFDTQE-VSGRI---------IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
++FD +E GR +RV + + K+ A + LYV NL
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE--------AADKFQSSNLYVKNLDPS 328
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ L+E FS F V+S V G S G GFV+FAT EEA A+S L GK + +P
Sbjct: 329 ISDEKLKEIFSP-FGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKP 387
Query: 246 LRLKFGQKNDD 256
L + Q+ +D
Sbjct: 388 LYVAIAQRKED 398
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F GTVV V + + ++ + +V +P++A A+ +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IRV ++ + P +RS + +++ NL + L + FS+
Sbjct: 98 NYIPLYGKPIRVMYSHR--DPSVRRSGAG-------NIFIKNLDESIDHKALHDTFSSFG 148
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N VS KV +S+ G+S GYGFV +A +E A+ AI L+G L
Sbjct: 149 NIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLL 189
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + V + L + F V+ +V + RS GYG+V+F ++A AI L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ + ++ V S
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSG 122
>gi|345571041|gb|EGX53856.1| hypothetical protein AOL_s00004g515 [Arthrobotrys oligospora ATCC
24927]
Length = 496
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 12/190 (6%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G VV V+II K K N+ FV P A+ A+
Sbjct: 77 KRALYVGGLDPRVTDDILRQIFETTGHVVSVKIIPDKNAKGFNYGFVEYDDPGAAERAMQ 136
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--LYVSNLSWKVRSTHLREFF 195
+ + V IRV +A + S+ A +T H ++V +LS +V L++ F
Sbjct: 137 TLNGRRVHQSEIRVNWAYQ--------SSQAAKEDTSHHFHIFVGDLSNEVNDELLQQAF 188
Query: 196 SANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ F +S ++V+++ GRS GYGFV++ + +AE A+S++DG+ L R +R + +
Sbjct: 189 TT-FGTISEARVMWDMKTGRSRGYGFVAYRERSDAEKALSAMDGEWLGSRAIRCNWANQK 247
Query: 255 DDVSESNKEE 264
S S + +
Sbjct: 248 GQPSISQQSQ 257
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + VS K++ + N + YGFV
Sbjct: 69 RRAAPEPNKRA---LYVGGLDPRVTDDILRQIFETTGHVVSVKIIPDKNA-KGFNYGFVE 124
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKF 250
+ AE A+ +L+G+ + +R+ +
Sbjct: 125 YDDPGAAERAMQTLNGRRVHQSEIRVNW 152
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQXXXXXMN 220
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 221 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 280
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 281 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 254 NDD 256
++
Sbjct: 339 KEE 341
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-K 176
++ + FV + E A+ A+ + + ++ R + F +FK R +R A AR +
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTN 160
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
+Y+ N + L++ F F P S V G+S G+GFVSF E+A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQXXXXXM 219
Query: 237 DGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSEDQ 271
+GKEL G+ + + QK + +E ++ E + +D+
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 255
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + G+P+R+ + Q++
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL S A ++ F+ G +V + I K G ++ F FV +P++A+ A+ +
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ--------RSASAPARETQHKLYVSNLSWKVRSTHLR 192
++ +I+ V A+K K R Q + + +YV N+ V LR
Sbjct: 253 GSQLGSKILYVARAQK-KAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ FSA S+K++ ++G S G+GFV F+T EEA A+++ G G+PL + Q
Sbjct: 312 DHFSACGTITSAKIM-RDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQ 370
Query: 253 KNDD 256
+ +D
Sbjct: 371 RKED 374
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NLP S A ++++F G ++ +++ + GK++ + FV S E ++ A+ + +
Sbjct: 102 LFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLN 161
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
V+ + + V +F KK + P AR T LY+ NL V L+E FS+ F
Sbjct: 162 GYTVADKELYVGKFVKKSDRILP----GPDARYTN--LYMKNLDLDVSEATLQEKFSS-F 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V+ + N G S G+GFV++ ++A+ A+ +++G +L + L + QK
Sbjct: 215 GKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQK 268
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 96/179 (53%), Gaps = 12/179 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S + + + F+ ++ V + K GK+ + ++ SP++A A+
Sbjct: 14 LYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELK 73
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ +RV +++ + P ++SA L+V NL + + L++ F
Sbjct: 74 NNSTLNGKAMRVMWSR--RDPDARKSAIG-------NLFVKNLPESIDNAGLQDIFKKYG 124
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDV 257
N +SSKVV S +G+S GYGFV F ++E ++ AI L+G + + L + KF +K+D +
Sbjct: 125 NILSSKVV-TSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRI 182
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E+ QK+ I + +YV N+ S E+++ F+ CGT+ +I++ G ++ F FV
Sbjct: 281 EEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVC 340
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
++PEEA AVN F G+ + V A++
Sbjct: 341 FSTPEEANKAVNTFHGFMYHGKPLYVALAQR 371
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 166 ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT 225
A+APA LYV +L V +HL + FS + S +V +S+ G+S YG+++F +
Sbjct: 8 AAAPA-----SLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVS 62
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++A AI + L G+ +R+ + +++ D +S
Sbjct: 63 PQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKS 97
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G+++ F FV EEAQ AV +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++GR++ V E +KF++ + +R + R LYV NL +
Sbjct: 253 GKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVS----RYQGVNLYVKNLDDGIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R FV + E A A+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +Y+ N + LRE FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + GRS G+GFV+F EEA+ A++ ++GKE+ GR + + QK
Sbjct: 216 KTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPVRIMWSQ--RDPGLRKSGVG-------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N R G+GFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVVCDENGSR--GHGFVHFETQEAATRAIQTMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSG 97
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 13/199 (6%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
QD E + + + NI Y+ N ++ +F+ G V V+++ GK++
Sbjct: 176 QDREAELQNKANEFTNI----YIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKG 231
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARET 173
F FV+ S E AQ AV + + ++++G+++ V A+K K+ Q+ R
Sbjct: 232 FGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQ 291
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
KLY+ NL + LR FS+ F + S+V EGRS G+G + F++ EEA A+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRREFSS-FGSI-SRVKVMKEEGRSKGFGLICFSSPEEATRAM 349
Query: 234 SSLDGKELMGRPLRLKFGQ 252
+ ++G+ L +PL + Q
Sbjct: 350 TEMNGRILGSKPLNIALAQ 368
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 122/269 (45%), Gaps = 27/269 (10%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS + P L I++ + SL Y NF + T+ T++ K + +Q
Sbjct: 30 FSTVGPVLS--IRICRDLVTRRSLGYAYVNFLQLADAQKALDTMNFDTIKGKSIRLMWSQ 87
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ RK +++ NL S + F+ G ++ +++ G +R +AFV +
Sbjct: 88 RDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQN 146
Query: 129 PEEAQAAVNQFDTQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWK 185
A A+ +E++G +++ F +FK R R A + + +Y+ N
Sbjct: 147 QMAADRAI-----EEMNGALLKDCRLFVGRFKN-RQDREAELQNKANEFTNIYIKNFGDD 200
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ L E FS VS KV+ +S G+S G+GFVSF + E A+ A+ ++GK++ G+
Sbjct: 201 MDDKRLEEVFSKYGKTVSVKVMTDST-GKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQL 259
Query: 246 LRLKFGQKNDDVSESNKEEEDVSEDQSAE 274
L + QK +E E + + E Q E
Sbjct: 260 LFVGRAQKK---AERQAELKQMFEQQKQE 285
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FSA
Sbjct: 72 NFDTIKGKSIRLMWS--------QRDAYLR-KSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+SSKV+ S++ S GY FV F + A+ AI ++G L
Sbjct: 123 KILSSKVM--SDDQGSRGYAFVHFQNQMAADRAIEEMNGALL 162
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
+ A+ Q LYV +L V L + FS +S ++ + RS GY +V+F
Sbjct: 2 NVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKN 254
+A+ A+ +++ + G+ +RL + Q++
Sbjct: 62 ADAQKALDTMNFDTIKGKSIRLMWSQRD 89
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 116 GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPAR-- 171
G +R FVTM S EA+ A+N D ++ GR + V+ + K+ + + P +
Sbjct: 17 GLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDH 76
Query: 172 --ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
E+ HK+YV N++W V LRE+FS VS++++ + GR YGF+SFA+ EE
Sbjct: 77 IFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEEL 136
Query: 230 EAAISSLDGKELMGRPLRLK 249
EAA+ LD GR + ++
Sbjct: 137 EAAL-KLDNTHFHGRNILVR 155
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV N+ WS E++ F+ CGTVV ++ KGG+ R + F++ AS EE +AA+ +
Sbjct: 83 KIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAAL-K 141
Query: 139 FDTQEVSGRIIRVEFAKK 156
D GR I V A +
Sbjct: 142 LDNTHFHGRNILVRQAHE 159
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 85 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQ 144
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S+ + H ++V +LS +V L + FS
Sbjct: 145 TLNGRRVHQSEIRVNWAY-------QSNTSSKEDTSNHFHIFVGDLSNEVNDEVLTQAFS 197
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 198 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 251
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 82 YVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT 141
YV NL + ++ LF G VV+ +R FAF+ M S E A A+ Q +
Sbjct: 305 YVGNLTPYTTPNDVVPLFQNFGYVVESRFQA-----DRGFAFIKMDSHESAAMAICQMNG 359
Query: 142 QEVSGRIIRVEFAKKFKKPRPQRSASAPARE 172
V+GR ++ + K K P PQ + P+++
Sbjct: 360 YNVNGRPLKCSWGKD-KTPNPQSAGFDPSQQ 389
>gi|320593519|gb|EFX05928.1| RNA splicing factor [Grosmannia clavigera kw1407]
Length = 610
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 11/197 (5%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNR 119
+DT++ P T+ + RR ++V L E+K+ F G V + +I+K + +++
Sbjct: 194 RDTSM---PPLTEDERDRRTVFVQQLAARLRTRELKDFFEKAGPVAEAQIVKDRVSNRSK 250
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPRPQRSASAPARETQ--- 174
+V S E AA+ Q Q++ G I+++ A+K ++ R A++ T
Sbjct: 251 GVGYVEFRSEESVTAAL-QLTGQKLLGIPVIVQMTEAEKNRQVRSTAEATSNGNSTGVPF 309
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
H+LYV N+ + + + LR F F + + + + GRS GYGFV F ++A A+
Sbjct: 310 HRLYVGNIHFSITESDLRNVFEP-FGELEFVQLQKDDTGRSRGYGFVQFRDSDQAREALE 368
Query: 235 SLDGKELMGRPLRLKFG 251
++G +L GRP+R+ G
Sbjct: 369 KMNGFDLAGRPIRVGLG 385
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 52 LCLQVCSTLQDTTVETKPEQTQKQNIR----RKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
+ +Q+ ++ V + E T N +LYV N+ +S + ++++N+F P G +
Sbjct: 279 VIVQMTEAEKNRQVRSTAEATSNGNSTGVPFHRLYVGNIHFSITESDLRNVFEPFGELEF 338
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
V++ K G++R + FV ++A+ A+ + + +++GR IRV
Sbjct: 339 VQLQKDDTGRSRGYGFVQFRDSDQAREALEKMNGFDLAGRPIRVGLG 385
>gi|402078039|gb|EJT73388.1| nuclear localization sequence binding protein [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 499
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 23/184 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V +L W+ +K F CG VV +I + G+++ F +V ASP +A+ A +
Sbjct: 255 LFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDFASPADAEKAHAEK 314
Query: 140 DTQEVSGRIIRVEF-------------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKV 186
+ GR I+V+F AKKF ++P +T L+V NL +
Sbjct: 315 QGAFIDGRQIKVDFSTGKSNNNDSADRAKKFG------DVTSPESDT---LFVGNLPFDA 365
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ EFF + S ++ + GR G+G+VSF + E+A++A + L G+ + GRP
Sbjct: 366 DEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNSVEDAKSAFTQLSGQSINGRPC 425
Query: 247 RLKF 250
RL +
Sbjct: 426 RLDY 429
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V +LSW V L+E F VS++V+ + GRS G+G+V FA+ +AE A +
Sbjct: 255 LFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDFASPADAEKAHAEK 314
Query: 237 DGKELMGRPLRLKFG---QKNDDVSESNKEEEDVSEDQS 272
G + GR +++ F N+D ++ K+ DV+ +S
Sbjct: 315 QGAFIDGRQIKVDFSTGKSNNNDSADRAKKFGDVTSPES 353
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 23/94 (24%)
Query: 81 LYVFNLPWS----------FSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
L+V NLP+ SVAEIK+L P + G+ + F +V+ S E
Sbjct: 356 LFVGNLPFDADEDVVSEFFGSVAEIKSLRLPT---------DQESGRRKGFGYVSFNSVE 406
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
+A++A Q Q ++GR R++++ P+P R
Sbjct: 407 DAKSAFTQLSGQSINGRPCRLDYS----TPKPPR 436
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N P + +++++F+ G + + K+ GK++ F FV P+ A+ AV
Sbjct: 182 IYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMH 241
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQR-SASAPARETQHKLYVSNLSWKVRS 188
+E++GR + E ++ +K R +R S P LYV NL +
Sbjct: 242 GKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGV----NLYVKNLDDNIDD 297
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E FS ++ P++S V GRS G+GFV F E+A A++ ++ + +PL +
Sbjct: 298 ERLKEAFS-HYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYV 356
Query: 249 KFGQKNDD 256
Q+ +D
Sbjct: 357 ALAQRKED 364
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + ++ + F+ G ++ +I + G ++ + FV E A+ A+ + +
Sbjct: 91 IFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKIN 150
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R++ + KF ++SAS R + +YV N LR+ FS F
Sbjct: 151 GMMINDRVV---YVGKFIPSSDRKSASGKLRF--NNIYVKNFPPDTTDEKLRDMFS-EFG 204
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
+ S V ++ EG+S G+GFV F + AE A+ + GKE+ GR L Q+ ++ E
Sbjct: 205 EIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQEE 264
Query: 261 NKE 263
K+
Sbjct: 265 LKQ 267
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L L FS +S+++ + S GYG+V+F ++AE A+ +L
Sbjct: 3 LYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALENL 62
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + MGRP+R+ + Q++ + +S K
Sbjct: 63 NYESFMGRPIRIMWSQRDPSLRKSGK 88
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + +K F+ G + +++ G+++ F FV PE+A AV + +
Sbjct: 286 LYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMN 345
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNL 182
V + + V A++ + R + A R Q++ V+ +
Sbjct: 346 ATLVGSKPLYVALAQRKEDRRAKLIAEHQQRLAQYRSPVTQM 387
>gi|71024221|ref|XP_762340.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
gi|46101864|gb|EAK87097.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
Length = 475
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 21/188 (11%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++V L W+ +K+ G V + + GK+R F +V A+ A+ A ++
Sbjct: 214 QIWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTSGKSRGFGYVDFATAAAAKKAFDE 273
Query: 139 FDTQEVSGRIIRVEF-----------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVR 187
+EV GR IR++ AKKF R SAP+ L++ NLS+ V
Sbjct: 274 GQGKEVDGRAIRIDLSTPKGDVTENRAKKFNDQR-----SAPS----STLFIGNLSFDVS 324
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ FS + ++ + + GR G+G+V FA +E A+AAI ++ G+EL GRPLR
Sbjct: 325 EDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAIDAMTGQELAGRPLR 384
Query: 248 LKFGQKND 255
L F D
Sbjct: 385 LDFSTPRD 392
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++++V LSW V + L+ S++V + G+S G+G+V FAT A+ A
Sbjct: 213 NQIWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTSGKSRGFGYVDFATAAAAKKAFD 272
Query: 235 SLDGKELMGRPLRLKFGQKNDDVSES 260
GKE+ GR +R+ DV+E+
Sbjct: 273 EGQGKEVDGRAIRIDLSTPKGDVTEN 298
>gi|453087889|gb|EMF15930.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 486
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 14/229 (6%)
Query: 41 PSLSYNFPTRN--LCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNL 98
PSL+ N P + + ++ L T+ + + + +R LYV L + +K +
Sbjct: 41 PSLNVNIPQNHNPVPTELTDILSPTSAGGQVRRAAPEPNKRALYVGGLDPRVTEDVLKQI 100
Query: 99 FAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G V V+II K K N+ FV P A+ A+ + + V + IRV +A
Sbjct: 101 FETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAY- 159
Query: 157 FKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGR 214
Q + SA + H ++V +LS +V L + FSA F VS ++V+++ GR
Sbjct: 160 ------QSNTSAKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA-FGTVSEARVMWDMKTGR 212
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
S GYGF +F + EAE A+SS+DG+ L R +R + + S S ++
Sbjct: 213 SRGYGFAAFRDRGEAEKALSSMDGEWLGSRAIRCNWANQKGQPSFSQQQ 261
>gi|400595086|gb|EJP62896.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 468
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A A+
Sbjct: 67 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAADRAMQ 126
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q ++S + H ++V +LS +V L + FS
Sbjct: 127 TLNGRRVHQSEIRVNWAY-------QANSSGKEDTSGHFHIFVGDLSNEVNDDILTQAFS 179
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + EAE A+SS+DG+ L R +R +
Sbjct: 180 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNW 233
>gi|242822492|ref|XP_002487897.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
gi|218712818|gb|EED12243.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
Length = 479
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ ++ F G + V I+ + G++R F +V A A+AA
Sbjct: 233 LFVGNLSWNVDEEWLRREFEEFGELSGVRIMTERESGRSRGFGYVEYADASSAKAAYEAK 292
Query: 140 DTQEVSGRIIRVEFAKKFKKPR------PQRSASAPARE-------TQHKLYVSNLSWKV 186
E+ GR I +++AK PR P+ A AR + L+V NL + V
Sbjct: 293 KDAEIDGRTINLDYAK----PRDANNQAPREKAQNRARSFGDQTSPESNTLFVGNLVFGV 348
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+RE F ++ ++ GR GYG+V F++ +EA A++ L G ++ GR +
Sbjct: 349 DENAVREVFEGQGQIQGIRLPTDAETGRPKGYGYVEFSSVDEARQALNDLQGTDIGGRAI 408
Query: 247 RLKF 250
RL F
Sbjct: 409 RLDF 412
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
L+V NLSW V LR F F +S +++ E GRS G+G+V +A A+AA +
Sbjct: 233 LFVGNLSWNVDEEWLRREFE-EFGELSGVRIMTERESGRSRGFGYVEYADASSAKAAYEA 291
Query: 236 LDGKELMGRPLRLKFGQKND 255
E+ GR + L + + D
Sbjct: 292 KKDAEIDGRTINLDYAKPRD 311
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL + ++ +F G + + + + G+ + + +V +S +EA+ A+N
Sbjct: 339 LFVGNLVFGVDENAVREVFEGQGQIQGIRLPTDAETGRPKGYGYVEFSSVDEARQALNDL 398
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQ 163
++ GR IR++F+ PR Q
Sbjct: 399 QGTDIGGRAIRLDFS----TPRAQ 418
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 116 GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPAR-- 171
G +R FVTM S EA+ A+N D ++ GR + V+ + K+ + + P +
Sbjct: 17 GLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDH 76
Query: 172 --ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
E+ HK+YV N++W V LRE+FS VS++++ + GR YGF+SFA+ EE
Sbjct: 77 IFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEEL 136
Query: 230 EAAISSLDGKELMGRPLRLK 249
EAA+ LD GR + ++
Sbjct: 137 EAAL-KLDNTHFHGRNILVR 155
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQ 138
K+YV N+ WS E++ F+ CGTVV ++ KGG+ R + F++ AS EE +AA+ +
Sbjct: 83 KIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAAL-K 141
Query: 139 FDTQEVSGRIIRVEFAKKFKKPR 161
D GR I V A + ++ R
Sbjct: 142 LDNTHFHGRNILVRQAHEERQAR 164
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL S + ++KN F G + ++K GK++ F FV + ++A AV
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 260
Query: 137 -NQFDTQE-VSGRI---------IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
++FD +E GR +RV + + K+ A + LYV NL
Sbjct: 261 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE--------AADKFQSSNLYVKNLDPS 312
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ L+E FS F V+S V G S G GFV+FAT EEA A+S L GK + +P
Sbjct: 313 ISDEKLKEIFSP-FGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKP 371
Query: 246 LRLKFGQKNDD 256
L + Q+ +D
Sbjct: 372 LYVAIAQRKED 382
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F GTVV V + + ++ + +V +P++A A+ +
Sbjct: 22 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 81
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IRV ++ + P +RS + +++ NL + L + FS+
Sbjct: 82 NYIPLYGKPIRVMYSHR--DPSVRRSGAG-------NIFIKNLDESIDHKALHDTFSSFG 132
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N VS KV +S+ G+S GYGFV +A +E A+ AI L+G L
Sbjct: 133 NIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLL 173
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + V + L + F V+ +V + RS GYG+V+F ++A AI L
Sbjct: 22 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 81
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ + ++ V S
Sbjct: 82 NYIPLYGKPIRVMYSHRDPSVRRSG 106
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +F G + V++++ G+++ F FV E+AQ A++ +
Sbjct: 292 VYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMN 351
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++GR I ++E + ++ Q + R LY+ NL + +LR+
Sbjct: 352 GKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRK 411
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS+ S+KV+ N GRS G+GFV F+ EEA A++ ++G+ + +PL + Q+
Sbjct: 412 EFSSFGTITSAKVMM--NNGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQR 469
Query: 254 NDD 256
++
Sbjct: 470 KEE 472
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 5/173 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + + F+ G ++ ++I G ++ + FV E A+ A+ + +
Sbjct: 200 VFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMN 258
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ I F FK + + S +Y+ N + L + F F
Sbjct: 259 GILLNDLKI---FVGHFKSRKDRESELGAQTREFTNVYIKNFGEDMDEDRLSKIFE-KFG 314
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V + GRS G+GFV+F E+A+ AI +++GKEL GR + QK
Sbjct: 315 PTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQK 367
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 12/159 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V +A+ +
Sbjct: 112 LYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDM 171
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S ++V NL + + L + FS+
Sbjct: 172 NLYIIKGKPVRLMWSQ--RDPSLRKSGIG-------NVFVKNLEKSINNKSLYDAFSSFG 222
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV+ + N S GYGFV F +E AE AI ++G
Sbjct: 223 NILSCKVITDDNG--SKGYGFVHFEHRESAERAIQKMNG 259
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
T LYV +L +V L E FS +S +V ++ RS GY +V+F +AE
Sbjct: 108 TMASLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERV 167
Query: 233 ISSLDGKELMGRPLRLKFGQKNDDVSESN 261
++ ++ + G+P+RL + Q++ + +S
Sbjct: 168 MTDMNLYIIKGKPVRLMWSQRDPSLRKSG 196
>gi|340522219|gb|EGR52452.1| predicted protein [Trichoderma reesei QM6a]
Length = 477
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 74 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQ 133
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + ++ + H ++V +LS +V L + FS
Sbjct: 134 TLNGRRVHQSEIRVNWAY-------QSNTTSKEDTSNHFHIFVGDLSNEVNDDILMQAFS 186
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 187 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 240
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + + K++ + N + YGFV
Sbjct: 66 RRAAPEPNKRA---LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVE 121
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+ AE A+ +L+G+ + +R+ + +++ S+ +
Sbjct: 122 YDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTSKED 160
>gi|119191127|ref|XP_001246170.1| hypothetical protein CIMG_05611 [Coccidioides immitis RS]
gi|392869018|gb|EAS30379.2| pre-mRNA splicing factor [Coccidioides immitis RS]
Length = 1296
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V N P + I+ +F+P G +V+V K +R F +V AS +A A+ + D
Sbjct: 898 LFVTNFPPEADESYIRRIFSPHGEIVEVRFPSLKFNTHRRFCYVQFASAADAHDAL-ELD 956
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ V + K P +R A + A E ++++SNL WK L E F+A F
Sbjct: 957 HKSVGKNL---NLVVKISDPS-KRQARSGAFEEGREIHISNLDWKATEDDLIELFTA-FG 1011
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
V + +G S G+GFV+F+T E A AA+ ++D KE RPLR++
Sbjct: 1012 KVEVARIPTKADGGSKGFGFVAFSTPEAANAAL-AMDQKEFRSRPLRVRL 1060
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R++++ NL W + ++ LF G V I G ++ F FV ++PE A AA+
Sbjct: 987 REIHISNLDWKATEDDLIELFTAFGKVEVARIPTKADGGSKGFGFVAFSTPEAANAAL-A 1045
Query: 139 FDTQEVSGRIIRVEFA 154
D +E R +RV +
Sbjct: 1046 MDQKEFRSRPLRVRLS 1061
>gi|146165272|ref|XP_001014712.2| hypothetical protein TTHERM_00047170 [Tetrahymena thermophila]
gi|146145520|gb|EAR94568.2| hypothetical protein TTHERM_00047170 [Tetrahymena thermophila
SB210]
Length = 261
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 107/218 (49%), Gaps = 18/218 (8%)
Query: 62 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRN 120
+TTVE ++ +++R ++V LP+S IK F CGT+ ++++ +++ GK
Sbjct: 9 NTTVEV--QENNDPSLKRSVFVSGLPYSADTDAIKEYFQNCGTIENIKLPRYQDTGKIIG 66
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVS 180
+ + ++PEEAQ A+ + + Q ++GR + + AK KK + AP T ++V
Sbjct: 67 YCHLVFSTPEEAQEAI-KLNKQVMNGRYLDISLAKGEKKVEYKNDVKAPEDCTT--IFVK 123
Query: 181 NLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240
NL++ + EFF V+ + V+ ++ G+ F+ F AA+ L+G E
Sbjct: 124 NLAFDCTEDEVGEFFEKCGKVVNVRFVYHYSQKHFKGFAFIEFKMNSSVNAAL-KLNGTE 182
Query: 241 LMGRPLRL-----------KFGQKNDDVSESNKEEEDV 267
GR L + +F Q D + NK+ E++
Sbjct: 183 FKGRKLTIDYEVGSQKKGFRFKQTQDGNQKYNKQYEEI 220
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + G ++ F FV E+AQ AV + +
Sbjct: 193 VYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GR+ G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + + A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+ F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD-VS 258
P S V G S G+GFV+F E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQLKQDR 287
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S A + F+P G ++ + + + ++ +A+V P +A+ A+
Sbjct: 13 LYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALETM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALFDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T++ AE AI ++G L R
Sbjct: 124 NILSCKVV--CDEHGSKGYGFVHFETRDAAERAIDKMNGMLLNDR 166
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
SAP+ T LYV +L +V L E FS +S +V + RS GY +V+F
Sbjct: 4 SAPSYPTA-SLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+AE A+ +++ + G+P+R+ + Q++ + +S
Sbjct: 63 ADAERALETMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 18/203 (8%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
K+YV NL + + ++K F G V+D + G R F F+ M S E++ A+
Sbjct: 197 KIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNARGFGFIQM-SDEDSLKAIEGM 255
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ E GR + V + P+ QR A+A +ET KLYV NLSW LRE F
Sbjct: 256 NGVEFDGRTLNVNKSL----PKGQRPAAAAPKET--KLYVGNLSWGTEEGALRELFGEYG 309
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL----------K 249
+ + + + G+ G+ FV+ + AA DG EL GR LR+
Sbjct: 310 SVIDCYIPTDRETGQHRGFAFVTMGPDDALRAA-DETDGYELDGRILRVNEAQPKGQRNN 368
Query: 250 FGQKNDDVSESNKEEEDVSEDQS 272
+ ND + + D SED S
Sbjct: 369 YNSYNDGGNYDGDDAWDSSEDDS 391
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 97 NLFAP--CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV--E 152
N F+P G VDV + + G K R FAFV M + ++ +AA+ Q + E++GR I V
Sbjct: 115 NNFSPKRGGGSVDVPLSRETG-KCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSES 173
Query: 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212
K + ++ R+ K+YV NL++ + L+ F F V + +
Sbjct: 174 LPKDQVAEKKKKFQGRKKRDEGAKIYVGNLNFDTTAEDLKAAFE-EFGDVMDCFLPVDYD 232
Query: 213 GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
G + G+GF+ + E++ AI ++G E GR L +
Sbjct: 233 GNARGFGFIQM-SDEDSLKAIEGMNGVEFDGRTLNV 267
>gi|380478106|emb|CCF43782.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 482
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 86 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQ 145
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S+ + H ++V +LS +V L + FS
Sbjct: 146 TLNGRRVHQSEIRVNWAY-------QSNTSSKEDTSNHFHIFVGDLSNEVNDEILTQAFS 198
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 199 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 252
>gi|310798412|gb|EFQ33305.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 482
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 86 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQ 145
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S+ + H ++V +LS +V L + FS
Sbjct: 146 TLNGRRVHQSEIRVNWAY-------QSNTSSKEDTSNHFHIFVGDLSNEVNDEILTQAFS 198
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 199 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 252
>gi|443899731|dbj|GAC77060.1| nuclear localization sequence binding protein, partial [Pseudozyma
antarctica T-34]
Length = 400
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 21/188 (11%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++V L W+ +K+ G V + + GK+R F +V A+ A+ A +
Sbjct: 204 QIWVGQLSWNVDNEWLKSEMEAFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFEE 263
Query: 139 FDTQEVSGRIIRVEF-----------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVR 187
+EV GR IR++ AKKF R SAP+ L++ NLS+ +
Sbjct: 264 GQGKEVDGRAIRIDLSTPKGDVTDNRAKKFNDQR-----SAPS----STLFIGNLSFDIS 314
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ FS + ++ + + GR G+G+V FA +E A+AAI ++ G+EL GRPLR
Sbjct: 315 EDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAIDAMTGQELAGRPLR 374
Query: 248 LKFGQKND 255
L F D
Sbjct: 375 LDFSTPRD 382
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++++V LSW V + L+ A S++V + G+S G+G+V FAT A+ A
Sbjct: 203 NQIWVGQLSWNVDNEWLKSEMEAFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFE 262
Query: 235 SLDGKELMGRPLRLKFGQKNDDVSES 260
GKE+ GR +R+ DV+++
Sbjct: 263 EGQGKEVDGRAIRIDLSTPKGDVTDN 288
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 94 EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-GRIIRV- 151
++K +F GT+ +++ GK+R F FV P+ A+ AV + + +EV+ G+ + V
Sbjct: 178 KLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVG 237
Query: 152 ----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNP 201
E +KF++ + +R R LYV NL + LR+ F+
Sbjct: 238 RAQKKAERQQELKRKFEQLKLERLN----RYQGVNLYVKNLDDSIDDERLRKEFAPFGTI 293
Query: 202 VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
S+KV+ E EGRS G+GFV F+ EEA A++ ++G+ ++ +PL + Q+ +D
Sbjct: 294 TSAKVMME--EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKED 346
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S ++ FAP GT+ +++ + G+++ F FV ++PEEA AV
Sbjct: 269 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVT--- 324
Query: 141 TQEVSGRII 149
E++GRII
Sbjct: 325 --EMNGRII 331
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + LF+ G + +II G + + FV + +A +A+
Sbjct: 13 RTLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPG--SDPYCFVEFVNHSDASSAITA 70
Query: 139 FDTQEVSGRIIRVEFAKK-FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + GR +RV +A ++ P R P H ++V +LS ++ ++ LRE FS
Sbjct: 71 MNARMCLGRELRVNWASSAIQQQTPHR----PDTSKHHHIFVGDLSPQIETSDLREAFSP 126
Query: 198 NFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F +S +VV ++ +S GYGFVSF K++AE AI ++DG L R +R + + +
Sbjct: 127 -FGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNWASRKPN 185
Query: 257 VSESN 261
E+
Sbjct: 186 HKETG 190
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 96/215 (44%), Gaps = 30/215 (13%)
Query: 58 STLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG- 116
S +Q T +P+ ++ +I +V +L ++++ F+P G + D ++K
Sbjct: 88 SAIQQQTPH-RPDTSKHHHI----FVGDLSPQIETSDLREAFSPFGEISDCRVVKDATTQ 142
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS--------- 167
K++ + FV+ + ++A+ A++ D + R IR +A + KP + + S
Sbjct: 143 KSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNWASR--KPNHKETGSYIGGHHRAL 200
Query: 168 ------APARETQHKLYVSNLSWKVRSTH-LREFFSANFNPVSSKVVFESNEGRSAGYGF 220
A + + +Y L+ S LR+ F F + +F + GY F
Sbjct: 201 NYDEVFAQSSPSNCTVYCGGLNQMASSEDFLRQAFD-EFGEIVDIRLF-----KDKGYAF 254
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ F +KE A AI + ++ G+ ++ +G++ +
Sbjct: 255 IKFNSKESACRAIVARHNSDIGGQAVKCSWGKEQE 289
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 15/195 (7%)
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMA 127
PEQ ++ +YV NLP+ +K F G V+ ++I + G++R F +VTM
Sbjct: 561 PEQDAREGA--TVYVRNLPYHLDNEGLKLNFQHAGVVLFSKVIYDREIGRSRGFGYVTMN 618
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH----KLYVSNLS 183
+ +EA+ AV + EV GR + V A P+ A +Q +++V NL
Sbjct: 619 TVQEAEKAVRIYHGSEVHGRRLTVSIAA------PRGGTWVGATRSQSGSPLRIFVCNLP 672
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSA--GYGFVSFATKEEAEAAISSLDGKEL 241
+V ++ L E F+ + V ++V++E EG S G+GFV+ AT EE+ AI +L+ + L
Sbjct: 673 SQVDNSRLEELFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYKAIRALNKQVL 732
Query: 242 MGRPLRLKFGQKNDD 256
L ++ ++ D
Sbjct: 733 EEHTLVVRVARERPD 747
>gi|449296279|gb|EMC92299.1| hypothetical protein BAUCODRAFT_38330 [Baudoinia compniacensis UAMH
10762]
Length = 634
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 8/188 (4%)
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMA 127
PE T + RR ++V L E++ F G VV+ +I+K + G+++ +V
Sbjct: 237 PEPTDDERDRRTVFVQQLAARLRTKELQAFFEAVGPVVEAQIVKDRVSGRSKGVGYVEFK 296
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ----HKLYVSNLS 183
E Q A+ Q Q++ G I + + +K R R A ++ H+LYV N+
Sbjct: 297 DEESVQKAI-QLTGQKLLGIPIIAQLTEA-EKNRQARHTEGTATQSNGIPFHRLYVGNIH 354
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ + L+ F F + + + +GRS GYGFV F +A+ A+ ++G EL G
Sbjct: 355 FSITEDDLKNVFEP-FGELEFVQLQKEEQGRSKGYGFVQFIDPAQAKEALEKMNGFELAG 413
Query: 244 RPLRLKFG 251
RP+R+ G
Sbjct: 414 RPIRVGLG 421
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W + + LF+ V D ++K + G++R FAFV+M + E+ + A
Sbjct: 915 RVYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVERASAA 973
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ------HKLYVSNLSWKVRSTHLR 192
+ +EV GR +RV A+ + R +R P + ++Y NLSW + L+
Sbjct: 974 LNGREVDGRELRVSKAQA-QAERGERPMRMPRQRRDFDQAEGRRVYFGNLSWGMDQYDLQ 1032
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ S + S+++ + + GRS G+GFV+ + EA+ ++ L+G+++ GR LR+
Sbjct: 1033 DLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQLNGQDVDGRVLRVNIAT 1092
Query: 253 KN 254
N
Sbjct: 1093 SN 1094
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230
R+ +H++YV NLSW V L E FS F+ + V+ + GRS G+ FVS +E+ E
Sbjct: 910 RQDEHRVYVGNLSWGVTDESLAELFS-EFDVRDASVMKDRETGRSRGFAFVSMNNEEDVE 968
Query: 231 AAISSLDGKELMGRPLRLKFGQ 252
A ++L+G+E+ GR LR+ Q
Sbjct: 969 RASAALNGREVDGRELRVSKAQ 990
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVN 137
R++Y NL W ++++L + G+V D +I + G++R F FVTM++ EA V
Sbjct: 1015 RRVYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVA 1074
Query: 138 QFDTQEVSGRIIRVEFA 154
Q + Q+V GR++RV A
Sbjct: 1075 QLNGQDVDGRVLRVNIA 1091
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ ++ F P G V+ +I + GK+R + +V S A+ A+N++
Sbjct: 5 LFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKALNEY 64
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+E+ GR I ++ + +P + S R Q+ L++ NLS+ +
Sbjct: 65 QGRELDGRPINLDMSTG----KPHVTKSTENRAKQYGDTPSAPSDTLFIGNLSFNADRDN 120
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L F + +S ++ + + G+G+V F++ +EA+AA+ +L+G+ + GR RL F
Sbjct: 121 LFNIFGVHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGRACRLDF 180
Query: 251 GQKND 255
D
Sbjct: 181 STPKD 185
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V LSW + LR F +S++V+ E G+S GYG+V F +K AE A++
Sbjct: 5 LFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKALNEY 64
Query: 237 DGKELMGRPLRLKFGQKNDDVSES 260
G+EL GRP+ L V++S
Sbjct: 65 QGRELDGRPINLDMSTGKPHVTKS 88
>gi|303315541|ref|XP_003067778.1| RNA recognition motif containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240107448|gb|EER25633.1| RNA recognition motif containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|320035369|gb|EFW17310.1| hypothetical protein CPSG_05753 [Coccidioides posadasii str.
Silveira]
Length = 1296
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 9/222 (4%)
Query: 29 HCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPW 88
+ + LL + + S F +++ +V T +E + Q + + L+V N P
Sbjct: 848 NAVTLLPADGDSASAIVEFDSKDDA-EVAQTRDQKVLEGRVLSVQLET-KATLFVTNFPP 905
Query: 89 SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRI 148
+ I+ +F+P G +V+V K +R F +V AS +A A+ + D + V +
Sbjct: 906 EADESYIRRIFSPHGEIVEVRFPSLKFNTHRRFCYVQFASAADAHDAL-ELDHKSVGENL 964
Query: 149 IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVF 208
K P +R A + A E ++++SNL WK L E F+A F V +
Sbjct: 965 ---NLVVKISDPS-KRQARSGAFEEGREIHISNLDWKATEDDLIELFTA-FGKVEVARIP 1019
Query: 209 ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+G S G+GFV+F+T E A AA+ ++D KE RPLR++
Sbjct: 1020 TKADGGSKGFGFVAFSTPEAANAAL-AMDQKEFRSRPLRVRL 1060
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R++++ NL W + ++ LF G V I G ++ F FV ++PE A AA+
Sbjct: 987 REIHISNLDWKATEDDLIELFTAFGKVEVARIPTKADGGSKGFGFVAFSTPEAANAAL-A 1045
Query: 139 FDTQEVSGRIIRVEFA 154
D +E R +RV +
Sbjct: 1046 MDQKEFRSRPLRVRLS 1061
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF+ G + ++ GK++ F FV +PE+A+ AV +
Sbjct: 201 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 260
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
E+ G ++ + KK +RSA R Q K LYV NL V
Sbjct: 261 EYELPGTERKLYVCRAQKKN--ERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDD 318
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F A S+KV+ + N GRS G+GFV F +EA A++ ++GK + +PL +
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDN-GRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 378 LAQRKED 384
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P +RS + +++ NL + + + + FS
Sbjct: 80 NFDMMYGKPIRIMWSQR--DPSMRRSGAG-------NIFIKNLDKSIDNKAIYDTFSMFG 130
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV E S GYGFV F T+E A+ AI ++G L G+
Sbjct: 131 NILSCKVA-NDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGK 174
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V ++ RS GY +V+F +AE A+ ++
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 80 NFDMMYGKPIRIMWSQRDPSMRRSG 104
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 45 YNFPTRNLCLQVCSTLQ----DTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIK 96
Y P L VC + ++ + EQ + + ++R LYV NL + + +K
Sbjct: 262 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILK 321
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G + +++ G+++ F FV P+EA AV + + + + + + V A++
Sbjct: 322 QNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQR 381
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 94 EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-GRIIRV- 151
++K +F GT+ +++ GK+R F FV P+ A+ AV + + +EV+ G+ + V
Sbjct: 178 KLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVG 237
Query: 152 ----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNP 201
E +KF++ + +R + R LYV NL + LR F+
Sbjct: 238 RAQKKAERQQELKRKFEQLKLERLS----RYQGVNLYVKNLDDSINDERLRREFAPFGTI 293
Query: 202 VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
S+KV+ E +GRS G+GFV F+ EEA A++ ++G+ ++ +PL + Q+ +D
Sbjct: 294 TSAKVMME--DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKED 346
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKNIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S + ++ FAP GT+ +++ G+++ F FV ++PEEA AV
Sbjct: 269 LYVKNLDDSINDERLRREFAPFGTITSAKVMMED-GRSKGFGFVCFSAPEEATKAVT--- 324
Query: 141 TQEVSGRII 149
E++GRII
Sbjct: 325 --EMNGRII 331
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSG 97
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +K +F G + V+++ GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ + +VE + K+ Q R LYV NL + LR+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GKY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P S V + G+S G+GFVSF E+A+ A+ ++GK++ G+ + + QK
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>gi|452001822|gb|EMD94281.1| hypothetical protein COCHEDRAFT_1094167 [Cochliobolus
heterostrophus C5]
Length = 501
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
+TK ++ ++ + L+V NL W+ ++ F G +V +I + G+ + F +V
Sbjct: 235 KTKTDEPVAEDGVKNLFVGNLSWNIDEDWLRREFESFGEIVGCRVITDRETGRAKGFGYV 294
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSA-------SAPARETQHKL 177
A +A A E+ GR + V+F+ +KP A SAP+ + L
Sbjct: 295 EFAKAADAAKAQKDMHEYELDGRPLNVDFSTPRQKPDANARANKFGDKRSAPS----NTL 350
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
++ NLS+ + ++E F+ N + + + G G+G+V F ++EEA AA+ +L
Sbjct: 351 FIGNLSFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALEALQ 410
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+++ GRPLR+ F DD
Sbjct: 411 GQDVAGRPLRVDFAAPRDD 429
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +K +F G + V+++ GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ + +VE + K+ Q R LYV NL + LR+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GKY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V + G+S G+GFVSF E+A+ A+ ++GK++ G+ + + QK + +
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP + + ++KNLFAP GT+ ++ GK++ F FV + + A AAV + D
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 141 TQEVS-------GRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
+ GR R E KF++ R R + LY+ NL +
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRF----EKLQGANLYIKNLDDHIDD 330
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E FS S KV+ + + G S G GFV+F++ +EA A++ ++GK +PL +
Sbjct: 331 EKLKELFSEYGTITSCKVMLDQH-GLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYV 389
Query: 249 KFGQKNDD 256
Q+ ++
Sbjct: 390 AVAQRKEE 397
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L S + ++ LF VV + + + + + +A+V +S ++A A+
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V+G+ IR+ + + P ++S A +++ NL + + LR+ F+A
Sbjct: 97 NFTPVNGKPIRIMISNR--DPSIRKSGYA-------NVFIKNLDLSIDNKALRDTFAAFG 147
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV +SN G+S GYGFV F ++E AE +I L+G L
Sbjct: 148 TVLSCKVAVDSN-GQSKGYGFVQFESEESAEISIEKLNGMLL 188
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E F VS +V + +S GY +V+F++ ++A A+ L
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ ++ + +S
Sbjct: 97 NFTPVNGKPIRIMISNRDPSIRKSG 121
>gi|47220951|emb|CAG03484.1| unnamed protein product [Tetraodon nigroviridis]
Length = 603
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+S + E+K +F VD+ + + + G NR A++ +
Sbjct: 285 QEDKKERDTRTLFVKNLPYSATADELKEVFE---DAVDIRVPQGQNGNNRGIAYIEFKTE 341
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQHKLYVSNLSWKVR 187
EA+ + + +V GR I V+F + + Q+ A PA L V+NL++
Sbjct: 342 AEAEKMLEEAQGADVQGRSIMVDFVGE----KSQKGAKVPAASGAASKTLVVNNLAF--- 394
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ E + F +S + +GR G+ FV F T ++A A+ SL+ ++ GR +R
Sbjct: 395 -SATEEVLQSTFEKATS-IRIPQRDGRPKGFAFVEFETVKDATDALESLNNTDIEGRSIR 452
Query: 248 LKFGQ 252
L+F Q
Sbjct: 453 LEFSQ 457
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 11/178 (6%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ L V NL +S + +++ F ++ I + G+ + FAFV + ++A A+
Sbjct: 385 KTLVVNNLAFSATEEVLQSTFEKATSIR----IPQRDGRPKGFAFVEFETVKDATDALES 440
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ GR IR+EF++ + R S P + L+V LS L+E F A
Sbjct: 441 LNNTDIEGRSIRLEFSQNSGRGEGGRGNSGPTK----TLFVKGLSEDTTDQSLKEAFEA- 495
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
V++++V + G S G+GFV F + + +AA ++D E+ G + L + + D
Sbjct: 496 --AVAARIVTDKETGSSKGFGFVDFDNEADCKAAKEAMDDGEIDGSKVTLDYAKPKGD 551
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL + EIK + D+EI + G +R F +V AS E+ A+ + +
Sbjct: 206 LFVGNLNSNKDFVEIKTALRKFFSKNDLEIADIRLGNSRKFGYVDFASEEDMHKAM-ELN 264
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANF 199
++V G+ ++++ PR + +A +E + L+V NL + + L+E F
Sbjct: 265 GKKVMGQELKLDM------PRSKETAQEDKKERDTRTLFVKNLPYSATADELKEVFE--- 315
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKN 254
+ V +V + G + G ++ F T+ EAE + G ++ GR + + F G+K+
Sbjct: 316 DAVDIRVP-QGQNGNNRGIAYIEFKTEAEAEKMLEEAQGADVQGRSIMVDFVGEKS 370
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 177 LYVSNLSWKVR----STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
L+V NL+ T LR+FFS N ++ + G S +G+V FA++E+ A
Sbjct: 206 LFVGNLNSNKDFVEIKTALRKFFSKNDLEIADIRL-----GNSRKFGYVDFASEEDMHKA 260
Query: 233 ISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
+ L+GK++MG+ L+L + + E KE +
Sbjct: 261 ME-LNGKKVMGQELKLDMPRSKETAQEDKKERD 292
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N + ++++ F G VV +++ G +R F FV+ P+ A A + +
Sbjct: 195 IYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMN 254
Query: 141 TQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
EV GR I V E KF+K + +R R LYV NL +
Sbjct: 255 DMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQ----RYQGVNLYVKNLDSTIDE 310
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LR+ FS SSKV+ E+ GRS G+GFV F++ EEA A++ ++G+ ++ +PL +
Sbjct: 311 EILRKEFSQFGTITSSKVMTEN--GRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYV 368
Query: 249 KFGQKNDD 256
Q+ +D
Sbjct: 369 ALAQRKED 376
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 14 LYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 73
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 74 NFDTIKGKPMRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKAIYDTFSAFG 124
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S G+GFV F T+E A+ A++ ++G L G+
Sbjct: 125 NILSCKVA-QDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGK 168
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 20/247 (8%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS P L I++ + SL Y NF + T+ T++ KP + +Q
Sbjct: 32 FSPAGPVL--SIRVCRDMVTRRSLGYAYVNFQQPADAERALDTMNFDTIKGKPMRIMWSQ 89
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ RK +++ NL S I + F+ G ++ ++ + + G ++ F FV +
Sbjct: 90 RDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFET 149
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR-SASAPARETQHKLYVSNLSWKVR 187
E A A+ + + ++G+ + + +F PR +R +A A++ +YV N K
Sbjct: 150 QEAADEAMAKVNGMMLNGKKV---YVGRFV-PRSERLAAMGEAQKRFTNIYVKNFGDKWD 205
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL-MGRPL 246
LR+FF VS+KV+ + + G S G+GFVS+ + A A ++ E+ GR +
Sbjct: 206 DDKLRDFFEKYGKVVSAKVMTD-DMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRI 264
Query: 247 RLKFGQK 253
+ QK
Sbjct: 265 YVGRAQK 271
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 14 LYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 73
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 74 NFDTIKGKPMRIMWSQRDPSLRKSG 98
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 65 VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
++ K E+ +++ I+R LYV NL + ++ F+ GT+ +++ G +++
Sbjct: 279 LKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTENG-RSKG 337
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRII 149
F FV +SPEEA AV E++GRI+
Sbjct: 338 FGFVCFSSPEEATKAVT-----EMNGRIV 361
>gi|425768240|gb|EKV06770.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum Pd1]
gi|425770410|gb|EKV08883.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum PHI26]
Length = 482
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG----KNRNFAFVTMASPEEAQ 133
+R LYV L + +K +F G VV V+II K G K N+ FV P A+
Sbjct: 90 KRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNGQFTTKGHNYGFVEFDDPGAAE 149
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A+ + + + IRV +A + S S ++V +LS +V L +
Sbjct: 150 RAMQTLNGRRIHQSEIRVNWAYQ------SNSTSKEDTSNHFHIFVGDLSNEVNDEVLTQ 203
Query: 194 FFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
FSA F VS ++V+++ GRS GYGFV+F + EA+ A++S+DG+ L R +R +
Sbjct: 204 AFSA-FGSVSEARVMWDMKTGRSRGYGFVAFRDRTEADKALNSMDGEWLGSRAIRCNWAN 262
Query: 253 KNDDVSESNKE 263
+ S S ++
Sbjct: 263 QKGQPSISQQQ 273
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN---EGRSAGYG 219
+R+A P + LYV L +V L++ F + VS K++ + N + YG
Sbjct: 82 RRAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNGQFTTKGHNYG 138
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
FV F AE A+ +L+G+ + +R+ + +++ S+ +
Sbjct: 139 FVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTSKED 180
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ LF+ G + V+++ + G +R F FV EEAQ AVN +
Sbjct: 178 IYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKAVNSMN 237
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ + GR++ V A+K R +R R Q K LYV NL +
Sbjct: 238 GKALGGRVLYVGRAQK----RTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDVIDDE 293
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 294 KLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 351
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 352 LAQRKEE 358
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + A++K++F G + +++ GK++ F FV A+ E+A AV +
Sbjct: 205 VYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALN 264
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ G+ V A+K K+ Q + + LY+ NL V LRE
Sbjct: 265 GKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRE 324
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS F ++S V G S G GFV+F+ E A A+ ++GK + G+PL + Q+
Sbjct: 325 LFS-EFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQR 383
Query: 254 NDD 256
+D
Sbjct: 384 KED 386
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 6/194 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ +I G+++ FV S E AQ A+++ +
Sbjct: 114 VFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLN 173
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + + F+ R Q SA + + +YV NL L+ F +
Sbjct: 174 GMLINDKQV---YVGPFQ--RKQDRESALSGTKFNNVYVKNLFEATTEADLKSIF-GEYG 227
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++S VV +G+S G+GFV+FA E+A A+ +L+GK G+ + QK +
Sbjct: 228 AITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELE 287
Query: 261 NKEEEDVSEDQSAE 274
KE + S ++ +
Sbjct: 288 LKERNEQSTKETVD 301
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ+ K+ + + LY+ NL S E++ LF+ GT+ ++++ G +R FV
Sbjct: 293 EQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVA 352
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+ E A A+ + + + V+G+ + V A++
Sbjct: 353 FSIAEGASWALGEMNGKMVAGKPLYVALAQR 383
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + F+ VS ++ + +S GYG+V+F+ +A AI L
Sbjct: 26 LYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVL 85
Query: 237 DGKELMGRPLRLKF 250
+ L G+ +R+ +
Sbjct: 86 NFTPLNGKTIRIMY 99
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF+ G + ++ GK++ F FV +PE+A+ AV +
Sbjct: 201 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 260
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
E+ G ++ + KK +RSA R Q K LYV NL V
Sbjct: 261 EYELPGTERKLYVCRAQKKN--ERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDD 318
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F A S+KV+ + N GRS G+GFV F +EA A++ ++GK + +PL +
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDN-GRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 378 LAQRKED 384
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P +RS + +++ NL + + + + FS
Sbjct: 80 NFDMMYGKPIRIMWSQR--DPSMRRSGAG-------NIFIKNLDKSIDNKAIYDTFSMFG 130
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV E S GYGFV F T+E A+ AI ++G L G+
Sbjct: 131 NILSCKVA-NDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGK 174
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V ++ RS GY +V+F +AE A+ ++
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 80 NFDMMYGKPIRIMWSQRDPSMRRSG 104
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 45 YNFPTRNLCLQVCSTLQ----DTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIK 96
Y P L VC + ++ + EQ + + ++R LYV NL + + +K
Sbjct: 262 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILK 321
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G + +++ G+++ F FV P+EA AV + + + + + + V A++
Sbjct: 322 QNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQR 381
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V L W+ +K+ F CG VV ++ K+R F +V A E + A+ +
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAIEK- 256
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-------LYVSNLSWKVRSTHLR 192
D E+ GR IRV +A + K P +A AR K L++ +LS+ V +
Sbjct: 257 DGSEIDGRAIRVNYATQRK---PNEAAEKRARVFNDKQSPPAETLWIGSLSFSVTEDQVY 313
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F + + S ++ + + G G+G+V F++ ++A AA+ +++G E+ GR +R+ F
Sbjct: 314 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNGAEIAGRAIRVDFAP 373
Query: 253 KNDDVSE 259
D E
Sbjct: 374 PKQDNGE 380
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 160 PRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
P + A E ++V LSW V + L+ F + VS++VVF+ + +S G+G
Sbjct: 181 PAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFG 240
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+V FA E + AI DG E+ GR +R+ +
Sbjct: 241 YVEFADLESSAKAIEK-DGSEIDGRAIRVNY 270
>gi|451850002|gb|EMD63305.1| hypothetical protein COCSADRAFT_161812 [Cochliobolus sativus
ND90Pr]
Length = 489
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
+TK ++ ++ + L+V NL W+ ++ F G +V +I + G+ + F +V
Sbjct: 222 KTKTDEPVAEDGVKNLFVGNLSWNIDEDWLRREFESFGEIVGCRVITDRETGRAKGFGYV 281
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSA-------SAPARETQHKL 177
A +A A E+ GR + V+F+ +KP A SAP+ + L
Sbjct: 282 EFAKAADAAKAQKDMHEYELDGRPLNVDFSTPRQKPDANARANKFGDKRSAPS----NTL 337
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
++ NLS+ + ++E F+ N + + + G G+G+V F ++EEA AA+ +L
Sbjct: 338 FIGNLSFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALEALH 397
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+++ GRPLR+ F DD
Sbjct: 398 GQDVAGRPLRVDFAAPRDD 416
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP E++ F G + +++ + G +R F FV E A +AV + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFE----KSQGANLYLKNLDDSVDDE 346
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N SSKV+ +G S G+GFV+++ EEA A+S ++GK + +PL +
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 406 LAQRKED 412
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 48 PTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
PT +QV ++ + +QT + LY +L + A + +LF VV
Sbjct: 21 PTAQTSVQVPVSIPLPSPVVVADQTHPNS---SLYAGDLDPKVTEAHLFDLFKHVANVVS 77
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
V + + + ++ +A++ ++P +A A+ + + R IR+ + + P + S
Sbjct: 78 VRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR--DPSTRLSGK 135
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+++ NL + + L E FS+ +S KV + GRS GYGFV F +E
Sbjct: 136 G-------NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEKEE 187
Query: 228 EAEAAISSLDG 238
A+AAI L+G
Sbjct: 188 SAQAAIDKLNG 198
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF- 139
+++ NL S + F+ GT++ ++ G+++ + FV E AQAA+++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 140 -----DTQEVSGRIIR-VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
D Q G IR E A+ P P+ + +YV NL ++ LR+
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFT----------NVYVKNLPKEIGEDELRK 247
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F +SS VV G S +GFV+F E A +A+ ++G L L + QK
Sbjct: 248 TF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 254 NDDVSESNKEEE 265
+S +EEE
Sbjct: 307 -----KSEREEE 313
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY +L KV HL + F N VS +V + N RS GY +++F+ +A A+ +L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ L RP+R+ ++ S K
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGK 135
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E++Q N LY+ NL S ++K +F+ G V +++ + G +R F FV ++P
Sbjct: 327 EKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNP 382
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
EEA A+++ + + + + + + A++ + R AP
Sbjct: 383 EEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQIRAPG 423
>gi|334350324|ref|XP_001371926.2| PREDICTED: ELAV-like protein 2-like [Monodelphis domestica]
Length = 522
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 14/193 (7%)
Query: 63 TTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNF 121
++ T+P + + + L V LP S + E NLFA G + ++++ + G++ +
Sbjct: 169 SSATTEPASSGSSDPKTNLIVNYLPQSMTQEEFYNLFATVGKIQSCKLVRDRSTGQSLGY 228
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSN 181
FV P +A+ AV + + + I+V FA R +S+ R+ LYVS
Sbjct: 229 GFVNYVDPRDAEQAVCLLNRLQCPPKTIKVSFA---------RPSSSSIRDA--NLYVSG 277
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
L + L + FS ++S+++ + G S G GF+ F K EAE AI +L+G++
Sbjct: 278 LPRNMMQKDLEQLFSPFGRIITSRILIDRVSGASRGVGFILFDKKSEAEEAIKALNGQKP 337
Query: 242 MGR--PLRLKFGQ 252
G PL +KF Q
Sbjct: 338 CGNRVPLIVKFAQ 350
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + LF P G V V+II+ K + F FVTM S EA AV
Sbjct: 441 IFVYNLSPDSDENVLWQLFGPFGAVSKVKIIRDFNTNKCKRFGFVTMTSYNEAALAVASL 500
Query: 140 DTQEVSGRIIRVEF 153
+ + GR+++V F
Sbjct: 501 NGYCLGGRVLQVSF 514
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +Y+ N F ++K F P G + +++ GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
+ E A+AAV + +++ G+ + V E +KF++ + +R S
Sbjct: 230 YETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGV-- 287
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + LR+ FS + ++S V EGRS G+GFV F + EA A+
Sbjct: 288 --NLYVKNLDDSIDDERLRKEFSL-YGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAV 344
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ L+G+ + +PL + Q+ ++
Sbjct: 345 TELNGRVVGSKPLYVALAQRKEE 367
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLVRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV + +G S GYGFV F T+E A +I ++G L G+ +
Sbjct: 115 NILSCKVATDE-KGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSG 88
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP E++ F G + +++ + G +R F FV E A +AV + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFE----KSQGANLYLKNLDDSVDDE 346
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N SSKV+ +G S G+GFV+++ EEA A+S ++GK + +PL +
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 406 LAQRKED 412
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 48 PTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
PT +QV ++ + +QT + LY +L + A + +LF VV
Sbjct: 21 PTAQTSVQVPVSIPLPSPVVVADQTHPNS---SLYAGDLDPKVTEAHLFDLFKHVANVVS 77
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
V + + + ++ +A++ ++P +A A+ + + R IR+ + + P + S
Sbjct: 78 VRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR--DPSTRLSGK 135
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+++ NL + + L E FS+ +S KV + GRS GYGFV F +E
Sbjct: 136 G-------NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEKEE 187
Query: 228 EAEAAISSLDG 238
A+AAI L+G
Sbjct: 188 SAQAAIDKLNG 198
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF- 139
+++ NL S + F+ GT++ ++ G+++ + FV E AQAA+++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 140 -----DTQEVSGRIIR-VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
D Q G IR E A+ P P+ + +YV NL ++ LR+
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFT----------NVYVKNLPKEIGEDELRK 247
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F +SS VV G S +GFV+F E A +A+ ++G L L + QK
Sbjct: 248 TF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 254 NDDVSESNKEEE 265
+S +EEE
Sbjct: 307 -----KSEREEE 313
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY +L KV HL + F N VS +V + N RS GY +++F+ +A A+ +L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ L RP+R+ ++ S K
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGK 135
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E++Q N LY+ NL S ++K +F+ G V +++ + G +R F FV ++P
Sbjct: 327 EKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNP 382
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+++ + + + + + + A++
Sbjct: 383 EEALRALSEMNGKMIGRKPLYIALAQR 409
>gi|358383610|gb|EHK21274.1| hypothetical protein TRIVIDRAFT_116557, partial [Trichoderma virens
Gv29-8]
Length = 466
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 76 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQ 135
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + ++ + H ++V +LS +V L + FS
Sbjct: 136 TLNGRRVHQSEIRVNWAY-------QSNTTSKEDTSNHFHIFVGDLSNEVNDDILLQAFS 188
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 189 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 242
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + + K++ + N + YGFV
Sbjct: 68 RRAAPEPNKRA---LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVE 123
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+ AE A+ +L+G+ + +R+ + +++ S+ +
Sbjct: 124 YDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTSKED 162
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 17/203 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRV-----------EFAKKFKKPRPQRSASAPARET 173
+ E A+AAV + +++ G+ + V E +KF++ + +R SA
Sbjct: 230 FETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVN- 288
Query: 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
LYV NL + L + FS + ++S V EGRS G+GFV F + EA A+
Sbjct: 289 ---LYVKNLDDSIDDERLCKEFSP-YGTITSAKVMTDEEGRSKGFGFVCFISANEATCAV 344
Query: 234 SSLDGKELMGRPLRLKFGQKNDD 256
+ L+G+ + +PL + Q+ ++
Sbjct: 345 TELNGRVVGSKPLYVALAQRKEE 367
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLLRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDKTIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + + S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVATDE-KANSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + ++L + FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L +P+R+ + Q++ + S
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSG 88
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N FS +K++F G + +++ G +R F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQE-VSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKL 177
P+ A+ A + + +E V G+ + V E K+ K+ Q + R L
Sbjct: 230 FEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 289
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E +GRS G+GFV F++ EEA A++ ++
Sbjct: 290 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 347
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 348 GRIVGTKPLYVALAQRKED 366
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 64 NFDIIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALFDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVA-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGK 158
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 64 NFDIIKGRPIRIMWSQRDPSLRKSG 88
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP E++ F G + +++ + G +R F FV E A +AV + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFE----KSQGANLYLKNLDDSVDDE 346
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N SSKV+ +G S G+GFV+++ EEA A+S ++GK + +PL +
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 406 LAQRKED 412
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 48 PTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
PT +QV ++ + +QT + LY +L + A + +LF VV
Sbjct: 21 PTAQTSVQVPVSIPLPSPVVVADQTHPNS---SLYAGDLDPKVTEAHLFDLFKHVANVVS 77
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
V + + + ++ +A++ ++P +A A+ + + R IR+ + + P + S
Sbjct: 78 VRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR--DPSTRLSGK 135
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+++ NL + + L E FS+ +S KV + GRS GYGFV F +E
Sbjct: 136 G-------NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEKEE 187
Query: 228 EAEAAISSLDG 238
A+AAI L+G
Sbjct: 188 SAQAAIDKLNG 198
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF- 139
+++ NL S + F+ GT++ ++ G+++ + FV E AQAA+++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 140 -----DTQEVSGRIIR-VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
D Q G IR E A+ P P+ + +YV NL ++ LR+
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFT----------NVYVKNLPKEIGEDELRK 247
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F +SS VV G S +GFV+F E A +A+ ++G L L + QK
Sbjct: 248 TF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 254 NDDVSESNKEEE 265
+S +EEE
Sbjct: 307 -----KSEREEE 313
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY +L KV HL + F N VS +V + N RS GY +++F+ +A A+ +L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ L RP+R+ ++ S K
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGK 135
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E++Q N LY+ NL S ++K +F+ G V +++ + G +R F FV ++P
Sbjct: 327 EKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNP 382
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+++ + + + + + + A++
Sbjct: 383 EEALRALSEMNGKMIGRKPLYIALAQR 409
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ N A ++ +F+ G + V+++ G++R F FV+ S E A+ AV +
Sbjct: 330 LYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEAARRAVEALN 389
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++V G+ + V A++ ++ QR R KLYV NL V LR
Sbjct: 390 GRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDRLRR 449
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
FS F V S+V EGRS G+G + F++ +EA A++ ++G+ L +PL + Q
Sbjct: 450 EFSG-FGAV-SRVKIMREEGRSKGFGLICFSSADEAARALAEMNGRVLGSKPLSIALAQ 506
Score = 64.3 bits (155), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ + G +R +AFV A A+ +
Sbjct: 238 VFIKNLDRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMN 296
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ G + F +F+ R R A +R + LY+ N ++ LR FS
Sbjct: 297 GAQLRGCRL---FVGRFQS-RQAREAELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYG 352
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +++ GRS G+GFVSF + E A A+ +L+G+++ G+PL + Q+
Sbjct: 353 KTLSVKVMTDAS-GRSRGFGFVSFESHEAARRAVEALNGRQVDGQPLFVGRAQR 405
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 164 RSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
R+ + A+ Q LYV +L +V L FSA +S ++ + RS GY +V+F
Sbjct: 137 RAMNVAAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNF 196
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
+A+ A+ +++ L GRPLRL + Q++ + +S
Sbjct: 197 LRLADAQRALDTMNFDVLRGRPLRLMWSQRDAHLRKS 233
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 11/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + ++++F G + ++ K GK+R F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMT-KDGKSRGFGFVA 228
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
PE+A+ AV + + +E+S G+++ V A+K K+ Q R L
Sbjct: 229 FEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNL 288
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ + EGRS G+GFV F+ +EA A++ ++
Sbjct: 289 YVKNLDDTIDDERLRKEFAPYGTITSAKVMLD--EGRSKGFGFVCFSAPDEATKAVTEMN 346
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ ++
Sbjct: 347 GRIVGSKPLYVALAQRKEE 365
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL K+ + + + FSA
Sbjct: 64 NFDPIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKKIDNKAMYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KV + +G+S GYGFV F T+E A +I ++G L
Sbjct: 115 NILSCKVA-QDEKGQSKGYGFVHFETEESANTSIEKVNGMLL 155
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 64 NFDPIKGRPIRIMWSQRDPSLRKSG 88
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V L W+ +K+ F CG VV ++ K+R F +V A E + A+ +
Sbjct: 195 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAIEK- 253
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-------LYVSNLSWKVRSTHLR 192
D E+ GR IRV +A + K P +A AR K L++ +LS+ V +
Sbjct: 254 DGSEIDGRAIRVNYATQRK---PNEAAEKRARVFNDKQSPPAETLWIGSLSFSVTEDQVY 310
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F + + S ++ + + G G+G+V F++ ++A AA+ +++G E+ GR +R+ F
Sbjct: 311 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNGAEIAGRAIRVDFAP 370
Query: 253 KNDDVSE 259
D E
Sbjct: 371 PKQDNGE 377
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 160 PRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
P + A E ++V LSW V + L+ F + VS++VVF+ + +S G+G
Sbjct: 178 PAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFG 237
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+V FA E + AI DG E+ GR +R+ +
Sbjct: 238 YVEFADLESSAKAIEK-DGSEIDGRAIRVNY 267
>gi|255085602|ref|XP_002505232.1| predicted protein [Micromonas sp. RCC299]
gi|226520501|gb|ACO66490.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII--KHKGGKNRNFAFVTMASPEEAQAAVN 137
KLYV +LP + + + +F P G V+ +++I + + + FAFV ++PEEA AA
Sbjct: 34 KLYVGHLPSTMNAERMLEMFKPFGRVLQIDVIPDRERQLSCKGFAFVLFSTPEEAIAA-K 92
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPR-PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
+ V G+ I V + + PR P + AP + KLYV+ + R+ L+
Sbjct: 93 ALNGHVVEGKSIDVRLKAEPRAPREPVNAPVAPVNDDA-KLYVAYMPDHYRAEELKMLLQ 151
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
P +V+ + GRS G+GF +++A AAI L+G+ L G+ L ++
Sbjct: 152 PYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLNGQMLDGKTLVVRI 205
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV +P + E+K L P G DV +I + G++R F F M ++A AA+
Sbjct: 131 KLYVAYMPDHYRAEELKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQG 190
Query: 139 FDTQEVSGR--IIRVEFAK 155
+ Q + G+ ++R+ AK
Sbjct: 191 LNGQMLDGKTLVVRIAGAK 209
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K F+ G +V V+++ GK++ F FV+ + E A+ AV+ +
Sbjct: 192 IYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVN 251
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+ G+ + V A+K K+ QR R K+YV NL + LR+
Sbjct: 252 GREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEKLRK 311
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS+ + + KV+ E EGRS G+G + F++ EEA A++ ++G+ L +P+ + Q+
Sbjct: 312 AFSSFGSIIRVKVMQE--EGRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVNIALAQR 369
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G +R + FV + A A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSVFGKILSSKVMCDDQG-SRGYGFVHFQNQAAADRAI---- 154
Query: 141 TQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+E++G +++ F FK R + + +Y+ N ++ L+EFFS
Sbjct: 155 -EEMNGVLLKDFRLFVGPFKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHY 213
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
VS KV+ +S+ G+S G+GFVSF T E A+ A+ ++G+E+ G+ + + QK
Sbjct: 214 GKIVSVKVMTDSS-GKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQK 267
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + F+ GTV+ + I + + + +A+V +AQ A++
Sbjct: 12 LYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FS
Sbjct: 72 NFDVIQGQSIRLMWS--------QRDAYLR-KSGIGNVFIKNLDKSIDNKTLYEHFSVFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
+SSKV+ + R GYGFV F + A+ AI ++G ++ + RL G
Sbjct: 123 KILSSKVMCDDQGSR--GYGFVHFQNQAAADRAIEEMNG--VLLKDFRLFVG 170
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF+ G + ++ GK++ F FV +PE+A+ AV +
Sbjct: 65 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 124
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
E+ G ++ + KK +RSA R Q K LYV NL V
Sbjct: 125 EYELPGTERKLYVCRAQKKN--ERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDD 182
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F A S+KV+ + N GRS G+GFV F +EA A++ ++GK + +PL +
Sbjct: 183 ILKQNFEAYGKITSAKVMCDDN-GRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 241
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 242 LAQRKED 248
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 45 YNFPTRNLCLQVCSTLQ----DTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIK 96
Y P L VC + ++ + EQ + + ++R LYV NL + + +K
Sbjct: 126 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILK 185
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G + +++ G+++ F FV P+EA AV + + + + + + V A++
Sbjct: 186 QNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQR 245
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ N +++ LFA G + ++ GK++ F FV +PE+A+ AVN+
Sbjct: 202 VFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMH 261
Query: 141 TQEV--SGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVR 187
++ S R + V A+K + +RSA R Q K LYV NL V
Sbjct: 262 EYQLPDSERKLYVCRAQK----KNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVD 317
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
LR+ F + S+KV+ + N GRS G+GFV F +EA A++ ++GK + +PL
Sbjct: 318 DEVLRQNFESYGKITSAKVMCDDN-GRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLY 376
Query: 248 LKFGQKNDD 256
+ Q+ +D
Sbjct: 377 VALAQRKED 385
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 21 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 80
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P +RS + +++ NL + + + + FS
Sbjct: 81 NFDVMYGKPIRIMWSQR--DPSMRRSGAG-------NIFIKNLDKSIDNKAIYDTFSMFG 131
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV E S GYGFV F T+E A+ AI ++G L G+
Sbjct: 132 NILSCKVA-NDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGK 175
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V ++ RS GY +V+F +AE A+ ++
Sbjct: 21 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 80
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 81 NFDVMYGKPIRIMWSQRDPSMRRSG 105
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 45 YNFPTRNLCLQVCSTLQ----DTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIK 96
Y P L VC + ++ + EQ + + ++R LYV NL + ++
Sbjct: 263 YQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLR 322
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G + +++ G+++ F FV P+EA AV + + + + + + V A++
Sbjct: 323 QNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQR 382
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP + + ++KNLFAP GT+ ++ GK++ F FV + + A AAV + D
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 141 TQEVS-------GRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
+ GR R E KF++ R R + LY+ NL +
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRF----EKLQGANLYIKNLDDHIDD 330
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E FS S KV+ + + G S G GFV+F++ +EA A++ ++GK +PL +
Sbjct: 331 EKLKELFSEYGTITSCKVMLDQH-GLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYV 389
Query: 249 KFGQKNDD 256
Q+ ++
Sbjct: 390 AVAQRKEE 397
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L S + ++ LF VV + + + + + +A+V +S ++A A+
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V+G+ IR+ + + P ++S A +++ NL + + LR+ F+A
Sbjct: 97 NFTPVNGKPIRIMISNR--DPSIRKSGYA-------NVFIKNLDLSIDNKALRDTFAAFG 147
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV +SN G+S GYGFV F ++E AE +I L+G L
Sbjct: 148 TVLSCKVAVDSN-GQSKGYGFVQFESEESAEISIEKLNGMLL 188
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E F VS +V + +S GY +V+F++ ++A A+ L
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ ++ + +S
Sbjct: 97 NFTPVNGKPIRIMISNRDPSIRKSG 121
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 20/192 (10%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPC-----GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAA 135
+YV NL ++ LF+ G ++ V++++ G +R F FV EEAQ A
Sbjct: 193 IYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKA 252
Query: 136 VNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
V + +EV GR++ V E +KF++ + R R LYV NL
Sbjct: 253 VMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVN--LYVKNLDD 310
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +
Sbjct: 311 SINDEKLRKEFSPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 368
Query: 245 PLRLKFGQKNDD 256
PL + Q+ ++
Sbjct: 369 PLYVALAQRKEE 380
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 10/178 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G +R F FV + E AQ A++ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS--- 196
++ R + F FK R +R A AR + +YV NL + L+E FS
Sbjct: 160 GMLLNDRKV---FVGHFKS-RQEREAELGARAMEFTNIYVKNLQVDMDEWGLQELFSQFD 215
Query: 197 -ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++ + S V + G S G+GFV+F EEA+ A+ ++GKE+ GR L + QK
Sbjct: 216 WSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQK 273
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + G+P+R+ + Q++ + +S
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSG 97
>gi|226499830|ref|NP_001140942.1| uncharacterized protein LOC100273020 [Zea mays]
gi|194701856|gb|ACF85012.1| unknown [Zea mays]
Length = 473
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ ++ F G + V I+ + G++R F +V A A+AA
Sbjct: 227 LFVGNLSWNVDEEWLRREFESFGELSGVRIMTERETGRSRGFGYVEYADASSAKAAYEAK 286
Query: 140 DTQEVSGRIIRVEFAKKFKKPR------PQRSASAPARE-------TQHKLYVSNLSWKV 186
E+ GR I +++AK PR P+ A AR + L+V NL + V
Sbjct: 287 KDTELDGRTINLDYAK----PRDANSQAPREKAQTRARSFGDQTSPESNTLFVGNLVFGV 342
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+RE F ++ ++ GR GYG+V F++ +EA A++ L G ++ GR +
Sbjct: 343 DENAVREVFEGQGQIQGVRLPTDAETGRPKGYGYVEFSSVDEARQALNELQGTDIGGRAI 402
Query: 247 RLKF 250
RL F
Sbjct: 403 RLDF 406
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
L+V NLSW V LR F + F +S +++ E GRS G+G+V +A A+AA +
Sbjct: 227 LFVGNLSWNVDEEWLRREFES-FGELSGVRIMTERETGRSRGFGYVEYADASSAKAAYEA 285
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKEE 264
EL GR + L + + D S++ +E+
Sbjct: 286 KKDTELDGRTINLDYAKPRDANSQAPREK 314
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL + ++ +F G + V + + G+ + + +V +S +EA+ A+N+
Sbjct: 333 LFVGNLVFGVDENAVREVFEGQGQIQGVRLPTDAETGRPKGYGYVEFSSVDEARQALNEL 392
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQ 163
++ GR IR++F+ PRPQ
Sbjct: 393 QGTDIGGRAIRLDFS----TPRPQ 412
>gi|325091401|gb|EGC44711.1| nucleic acid-binding protein [Ajellomyces capsulatus H88]
Length = 359
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++K A GT+ V I+ G +R FA+V S E A+AA+++ +
Sbjct: 153 IYVGNLFFEVTAEDLKRDMAKFGTIYSVRIVYDSRGMSRGFAYVQFDSVEAAEAAISEMN 212
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
GR I V ++ + P+ AS P + L++ NLS+++ L + F N
Sbjct: 213 MSIYEGRRIVVNYSTR-NSAAPRTRASEPTK----TLFIGNLSFEMTDRELNDLFRDIPN 267
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
+V + GR G+ F E A+AA+ L K GRPLRL + D+
Sbjct: 268 VDDVRVSVDKRTGRPRGFAHADFLDVESAKAAMEILKEKAPYGRPLRLDYSLNTKDM 324
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S ++ +L G + ++ I+ + GK++ F F + A+ AV +
Sbjct: 188 VFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAVENEN 247
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHK---LYVSNLSWKVRSTHLREFFS 196
+ SG++I V A+K + +R A + ET+++ LY+ NL + S LR FS
Sbjct: 248 GKMFSGKVIYVGRAQK----KLEREAELKHKFETKYQGVNLYIKNLDDSIDSDKLRATFS 303
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
A SSKV+ + S G+GFV ++T +EA A++ + G+ + +PL + F Q+ D
Sbjct: 304 AYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVAFAQRKD 362
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S + + +F G V ++ I + + ++ ++A++ + +A+ A++
Sbjct: 10 LYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALDTL 69
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ R+ ++++ P ++S +++ NL V L + FSA
Sbjct: 70 NNTPIKGKACRIMWSQR--DPSLRKSGIG-------NIFIKNLDKTVDHKALYDTFSAFG 120
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KVV + S G+GFV + ++E AE AI+ ++G
Sbjct: 121 NILSCKVVTDETN-TSKGFGFVHYESQESAEKAIAKVNG 158
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LY+ NL S +++ F+ GT+ ++++ KG ++ F FV ++P+EA AV +
Sbjct: 284 LYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEM 343
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSA 166
+ V + + V FA++ R Q A
Sbjct: 344 HGRMVGSKPLYVAFAQRKDVRRAQLEA 370
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV +L V +HL E F+ PV++ ++ ++ RS Y ++++ +AE A+ +
Sbjct: 10 LYVGDLHPDVSESHLFEVFN-QVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALDT 68
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESN 261
L+ + G+ R+ + Q++ + +S
Sbjct: 69 LNNTPIKGKACRIMWSQRDPSLRKSG 94
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + + LF+ GTV V +++ G++R F FV +PE A+ A+
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 141 TQEVS------GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
++ G+ ++ + ++ K + + A LYV NLS + T LRE
Sbjct: 264 GLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREI 323
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F VS+KV+ N GRS G+GFV F+ EE++ A L+G + G+P+ ++ ++
Sbjct: 324 FGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382
Query: 255 DD 256
+D
Sbjct: 383 ED 384
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S + + ++ +F P G+++ ++++ + G+++ F FV + + A +A +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVE-ENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
V G+ + F KF + +R+A A +++ + +YV NL V L FS +
Sbjct: 173 GSMVYGKKL---FVAKFIN-KDERAAMAGNQDSTN-VYVKNLIETVTDDCLHTLFS-QYG 226
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
VSS VV GRS G+GFV+F E A+ A+ SL G +L + L + K D+ E
Sbjct: 227 TVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286
Query: 261 NKEE 264
K++
Sbjct: 287 LKQK 290
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 74 KQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEA 132
K N+R LYV NL S + ++ +F G +V +++ H+ G+++ F FV ++ EE+
Sbjct: 298 KPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEES 357
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
+ A + V G+ I V A++ K+ R +R
Sbjct: 358 KQAKRYLNGFLVDGKPIVVRVAER-KEDRIKR 388
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +LS V L + FS N VS + S G+S Y +++F + A A++ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 237 DGKELMGRPLRLKFGQKN 254
+ +L G+ +R+ + Q++
Sbjct: 83 NHSDLKGKAMRIMWSQRD 100
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP E++ F G + +++ + G +R F FV E A +AV + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFE----KSQGANLYLKNLDDSVDDE 346
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N SSKV+ +G S G+GFV+++ EEA A+S ++GK + +PL +
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP-QGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIA 405
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 406 LAQRKED 412
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 48 PTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
PT +QV ++ + +QT + LY +L + A + +LF VV
Sbjct: 21 PTAQTSVQVPVSIPAPSPAAVADQTHPNS---SLYAGDLDPKVTEAHLFDLFKHVANVVS 77
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
V + + + ++ +A++ ++P +A A+ + + R IR+ + + P + S
Sbjct: 78 VRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFERPIRIMLSNR--DPSTRLSGK 135
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+++ NL + + L E FS+ +S KV + GRS GYGFV F +E
Sbjct: 136 G-------NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEKEE 187
Query: 228 EAEAAISSLDG 238
A+AAI L+G
Sbjct: 188 SAQAAIDKLNG 198
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF- 139
+++ NL S + F+ GT++ ++ G+++ + FV E AQAA+++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 140 -----DTQEVSGRIIR-VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
D Q G IR E A+ P P+ + +YV NL ++ LR+
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFT----------NVYVKNLPKEIGEDELRK 247
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F +SS VV G S +GFV+F E A +A+ ++G L L + QK
Sbjct: 248 TF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 254 NDDVSESNKEEE 265
+S +EEE
Sbjct: 307 -----KSEREEE 313
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 160 PRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYG 219
P P +A A LY +L KV HL + F N VS +V + N RS GY
Sbjct: 34 PAPSPAAVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYA 92
Query: 220 FVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNK 262
+++F+ +A A+ +L+ L RP+R+ ++ S K
Sbjct: 93 YINFSNPNDAYRAMEALNYTPLFERPIRIMLSNRDPSTRLSGK 135
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E++Q N LY+ NL S ++K +F+ G V +++ + G +R F FV ++P
Sbjct: 327 EKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNP 382
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+++ + + + + + + A++
Sbjct: 383 EEALRALSEMNGKMIGKKPLYIALAQR 409
>gi|358397912|gb|EHK47280.1| hypothetical protein TRIATDRAFT_165657, partial [Trichoderma
atroviride IMI 206040]
Length = 465
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A A+
Sbjct: 75 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMA 134
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + + + H ++V +LS +V L + FS
Sbjct: 135 TLNGRRVHQSEIRVNWAY-------QSNTTTKEDTSNHFHIFVGDLSNEVNDDILHQAFS 187
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 188 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 241
>gi|296423176|ref|XP_002841131.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637365|emb|CAZ85322.1| unnamed protein product [Tuber melanosporum]
Length = 498
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + +K +F G V +V+II K K N+ F+ P A+ A+
Sbjct: 85 KRALYVGGLDPRVTEEILKQIFETTGHVQNVKIIPDKNSKGYNYGFIEYDDPGAAERAMQ 144
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + + IRV +A Q + S+ T H ++V +LS +V L + FS
Sbjct: 145 TLNGRRIHQAEIRVNWAY-------QSNQSSKEDTTNHFHIFVGDLSNEVNDEVLMQAFS 197
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 198 T-FGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMDGEWLGSRAIRCNW 251
>gi|170061963|ref|XP_001866463.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880034|gb|EDS43417.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 341
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 59 TLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK--GG 116
T+Q +++ + L V LP + + E+K+LF+ G V ++I+ K G
Sbjct: 7 TVQQNGRSGSIGSGGQEDSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTAG 66
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK 176
++ + FV PE+A+ A+N F+ + + I+V FA RP A A
Sbjct: 67 QSLGYGFVNYHRPEDAEKAINTFNGLRLQNKTIKVSFA------RPSSDAIKGA-----N 115
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYVS LS + L F ++S+++ ++ G S G GF+ F + EAE AI L
Sbjct: 116 LYVSGLSKSMTQQDLEALFQPYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQL 175
Query: 237 DGKELMG--RPLRLKF 250
+G G P+ +KF
Sbjct: 176 NGTTPKGASEPITVKF 191
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + LF P G V V++IK + K + F FVTM + +EA AV
Sbjct: 258 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSL 317
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 318 NGYTLGNRVLQVSF 331
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 50/250 (20%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGK 117
LQ+ T++ + I+ LYV L S + +++ LF P G ++ I+ + G
Sbjct: 94 LQNKTIKVSFARPSSDAIKGANLYVSGLSKSMTQQDLEALFQPYGQIITSRILCDNITGL 153
Query: 118 NRNFAFVTMASPEEAQAAVNQFD--TQEVSGRIIRVEFAKK--------------FKKPR 161
++ F+ EA+ A+ Q + T + + I V+FA + P
Sbjct: 154 SKGVGFIRFDQRSEAERAIQQLNGTTPKGASEPITVKFANNPSNNINKAIPPLAAYLTPT 213
Query: 162 P--QRSASAPARETQHK---------------------------LYVSNLSWKVRSTHLR 192
P +R P + ++V NL+ + L
Sbjct: 214 PNLRRFPPGPIHPLGGRFSRYSPLTGDLGTSVLSANAINGSGWCIFVYNLAPETEENVLW 273
Query: 193 EFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
+ F F V S KV+ + + G+GFV+ +EA A+ SL+G L R L++ F
Sbjct: 274 QLFGP-FGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSLNGYTLGNRVLQVSF- 331
Query: 252 QKNDDVSESN 261
+ N+ S++N
Sbjct: 332 KTNNTKSKTN 341
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 103/195 (52%), Gaps = 10/195 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S E+ + F+ G ++ +I+ + G+++ + FV E A+ A+ + +
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
+ R++ + KF P+ +R + A R+ + + LYV N + + L+E FS F
Sbjct: 163 NMIIRDRVV---YVGKFI-PKTERKSQA--RKVKFNNLYVKNFPPETDNEKLKEMFS-EF 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V + NEG+S G+GFV + + AE A+ ++ GKE+ GR L Q+ ++ E
Sbjct: 216 GEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQE 275
Query: 260 SNKE--EEDVSEDQS 272
K+ E+ +E QS
Sbjct: 276 ELKQKIEKQRAERQS 290
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V + L+ FS +S++V + +S GYG+V+F + AE A+ L
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVL 74
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + LMGRP+R+ + Q++ + +S K
Sbjct: 75 NYEPLMGRPIRIMWSQRDPSLRKSGK 100
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 10/195 (5%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E QK + +Y+ N+ + + E+ +F G++ +++ G +R F FV P
Sbjct: 174 ELGQKAKLYTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDP 233
Query: 130 EEAQAAVNQFDTQEV-SGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSN 181
EEA+ AV + +E G+ V A+K K+ Q R LYV N
Sbjct: 234 EEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKN 293
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
L + LR+ FS S+KV+ + +GRS G+GFV F++ EEA A++ ++G+ +
Sbjct: 294 LDDTIDDERLRKEFSVFGTITSAKVMMD--DGRSKGFGFVCFSSPEEATKAVTDMNGRIV 351
Query: 242 MGRPLRLKFGQKNDD 256
+PL + Q+ +D
Sbjct: 352 GTKPLYVALAQRKED 366
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V + +A+ A++
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 64 NFDILKGRPMRIMWSQR--DPSLRKSGVG-------NVFIKNLDRSIDNKAMYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G+S GYGFV F ++ A +I ++G L G+
Sbjct: 115 NILSCKVA-QDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGK 158
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L GRP+R+ + Q++ + +S
Sbjct: 64 NFDILKGRPMRIMWSQRDPSLRKSG 88
>gi|154269845|ref|XP_001535826.1| hypothetical protein HCAG_09244 [Ajellomyces capsulatus NAm1]
gi|150409464|gb|EDN04912.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 387
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LY+ L + ++ +F G V V+II K K N+ FV P A+ A++
Sbjct: 91 KRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMS 150
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + V IRV +A + + +++ ++V +LS +V L + FSA
Sbjct: 151 TLNGRRVHQSEIRVNWAYQSNNNNKEDTSN------HFHIFVGDLSNEVNDEVLLQAFSA 204
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 205 -FGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQKGQ 263
Query: 257 VSESNKE 263
S S ++
Sbjct: 264 PSISQQQ 270
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LY+ L +V LR+ F + S K++ + N + YGFV
Sbjct: 83 RRAAPEPNKRA---LYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNS-KGLNYGFVE 138
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVS 268
+ AE A+S+L+G+ + +R+ + +++ N +ED S
Sbjct: 139 YDDPGAAERAMSTLNGRRVHQSEIRVNWAYQSN-----NNNKEDTS 179
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 10/188 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 88 KRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNSKGFNYGFVEYDDPAAAERAMQ 147
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S + H ++V +LS +V L + FS
Sbjct: 148 TLNGRRVHQAEIRVNWAY-------QSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 200
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
A F VS ++V+++ GRS GYGFV+F +++AE A+SS+DG+ L R +R + +
Sbjct: 201 A-FGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMDGEWLGSRAIRCNWANQKG 259
Query: 256 DVSESNKE 263
S S ++
Sbjct: 260 QPSISQQQ 267
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 145 SGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS 204
+G ++ + A F + R+A P + LYV L +V LR+ F + +
Sbjct: 66 NGGMMSPDSAGGFVR----RAAPEPNKRA---LYVGGLDPRVTEDVLRQIFETTGHVQNV 118
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
K++ + N + YGFV + AE A+ +L+G+ + +R+ + +++ SNKE+
Sbjct: 119 KIIPDKNS-KGFNYGFVEYDDPAAAERAMQTLNGRRVHQAEIRVNWAYQSN---TSNKED 174
>gi|240275573|gb|EER39087.1| nucleic acid-binding protein [Ajellomyces capsulatus H143]
Length = 332
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++K A GT+ V I+ G +R FA+V S E A+AA+++ +
Sbjct: 126 IYVGNLFFEVTAEDLKRDMAKFGTIYSVRIVYDSRGMSRGFAYVQFDSVEAAEAAISEMN 185
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
GR I V ++ + P+ AS P + L++ NLS+++ L + F N
Sbjct: 186 MSIYEGRRIVVNYSTR-NSAAPRTRASEPTK----TLFIGNLSFEMTDRELNDLFRDIPN 240
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
+V + GR G+ F E A+AA+ L K GRPLRL + D+
Sbjct: 241 VDDVRVSVDKRTGRPRGFAHADFLDVESAKAAMEILKEKAPYGRPLRLDYSLNTKDM 297
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + E LF G + + + K GK R FAFV A+ + AQ AV++ +
Sbjct: 252 VYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELN 311
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
E G+ + V A+K +K Q + L+V NL ++ L+
Sbjct: 312 DFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKS 371
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F ++S V +S G+GFV ++ EEA AI+ ++ + L G+PL + Q+
Sbjct: 372 EFSA-FGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQR 430
Query: 254 ND 255
+
Sbjct: 431 KE 432
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LY+ L + A + LF G V + + + ++ +A+V + E+ + A+++
Sbjct: 71 LYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 130
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++++ R + + +++ NL + + L + FSA
Sbjct: 131 NYTLIKGRPCRIMWSQRDPSLRKMGTGN---------VFIKNLDPAIDNKALHDTFSAFG 181
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+S KV + G S GYGFV F + + A AAI ++G
Sbjct: 182 KILSCKVAVDE-LGNSKGYGFVHFDSVDSANAAIEHVNG 219
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL +K+ F+ GT+ +++ + K++ F FV ++PEEA A+ + +
Sbjct: 355 LFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMN 414
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ ++G+ + V A++ + R Q A AR
Sbjct: 415 QRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 445
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEA 231
T LY+ L V L E F++ PV+S +V ++ RS GY +V+F E+ E
Sbjct: 67 TSASLYIGELDPMVTEAMLFELFNS-IGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 125
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
A+ L+ + GRP R+ + Q++
Sbjct: 126 ALDELNYTLIKGRPCRIMWSQRD 148
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N+ + AE ++L P G + V + + + G ++ F FV + E A+ AV++ +
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELN 288
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV+G+ + + E + KK ++ A+ LYV NL + LR
Sbjct: 289 EKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRA 348
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V + G S G+GFV +++ +EA A+S ++GK + +PL + Q+
Sbjct: 349 EFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 254 ND 255
D
Sbjct: 408 KD 409
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + FA G ++ ++ + GK+R FAFV ++ E A AA+ +
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + V KK R + A+ T +Y+ N+ +V + F
Sbjct: 196 GMLLNDKKVYVGH-HVGKKERLSKVEELRAQFT--NVYIKNVDLEVTDAEFEDLVKP-FG 251
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
P S + +G S G+GFV++ E A A+ L+ KE+ G+ L
Sbjct: 252 PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKL 297
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + ++ F GT+ ++++ G +R F FV +SP+EA AV++ +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMN 391
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+ + + + V A++ K R Q S A+ Q ++
Sbjct: 392 GKMIGTKPLYVALAQR-KDVRRQALESQIAQRAQQRM 427
>gi|303321732|ref|XP_003070860.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110557|gb|EER28715.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320040347|gb|EFW22280.1| hypothetical protein CPSG_00179 [Coccidioides posadasii str.
Silveira]
Length = 498
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ +++ F G + V I+ + G++R F +V + E+A A
Sbjct: 266 LFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEFTNAEDASKAFKAK 325
Query: 140 DTQEVSGRIIRVEFAKKFK-----KPRPQRSASAPARETQ---HKLYVSNLSWKVRSTHL 191
E+ GR I ++FA + + R Q A + +T L++ N+S+ +
Sbjct: 326 KDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFGDQTSPESDTLFIGNISFNADENAV 385
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+E FS++ + + ++ + GR G+G+V F++ +EA +A ++L G EL GR +RL F
Sbjct: 386 QETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNALQGTELAGRAMRLDF 444
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L++ N+ ++ ++ F+ G+++ + + + G+ + F +V +S +EA++A N
Sbjct: 371 LFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNAL 430
Query: 140 DTQEVSGRIIRVEFA 154
E++GR +R++F+
Sbjct: 431 QGTELAGRAMRLDFS 445
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 81 LYVFNLPWSFSV-AEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+YV NLP S++ ++K LF GT+ + K + K+R F FV + E A AAV
Sbjct: 188 IYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAM 247
Query: 140 DTQEVS-------GRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
+ +E+ GR ++ E ++ K+ + + LY+ +L V L
Sbjct: 248 NEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDAL 307
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
R+ FS F ++S + N G S G+GFV+F + +EA AAI + G + G+PL
Sbjct: 308 RDKFS-KFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPL 361
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 85/163 (52%), Gaps = 11/163 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G+V+ + + + + +A+V +A+ A+ +
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEEL 69
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ +++ + R+ +A++ P +RS + +++ NL+ ++ + L + FSA F
Sbjct: 70 NFEKIHDKPCRIMWAQR--NPAARRSGAG-------NIFIKNLNKEIDNKALYDTFSA-F 119
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ S V +G S GYGFV F +E+A+ AI +++GK L+
Sbjct: 120 GTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLL 162
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + F+ GT++ ++ + G++R + FV E+AQ A++ +
Sbjct: 98 IFIKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVN 157
Query: 141 TQEVSGRIIRVEFAKKF--KKPRPQRSASAPARETQHKLYVSNL-SWKVRSTHLREFFSA 197
+ + +++ V KF +K R Q+ T +YV NL + L++ F
Sbjct: 158 GKMLLKQVVTV---TKFLSRKEREQQGG-----RTYTNIYVKNLPDSYATNDDLKKLFE- 208
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
F ++S + + +S G+GFV+F E A AA+ +++ KE+
Sbjct: 209 KFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMNEKEI 252
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 60 LQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR 119
+ D + + E+ + N LY+ +LP + +++ F+ GT+ ++I+ G +R
Sbjct: 276 IHDKIRQERDEKNKNSN----LYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSR 331
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
F FV S +EA AA+ + + G+ + V A
Sbjct: 332 GFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALA 366
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V L EFFS + +S +V ++ +S GY +V++ +A+ A+ L
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEEL 69
Query: 237 DGKELMGRPLRLKFGQKN 254
+ +++ +P R+ + Q+N
Sbjct: 70 NFEKIHDKPCRIMWAQRN 87
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ ++ +++ F+P GT+ + + K + GK+R F FV E+A AV + +
Sbjct: 230 VYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELN 289
Query: 141 TQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQ------HKLYVSNLSWKVRSTHLRE 193
+++ G+ + V A KK ++ + AR+ Q + L+V NL + L E
Sbjct: 290 NKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEE 349
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F S+KV+ + + G+S G+GFV +++ EEA AI+ + + + G+PL + Q+
Sbjct: 350 EFKPYGTITSAKVMLD-DAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQR 408
Query: 254 ND 255
+
Sbjct: 409 KE 410
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
++N +++ NL + + + F+ G ++ +I + G ++ F FV E A+
Sbjct: 130 RRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATDENGNSKGFGFVHYEESESAK 189
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
AA+ + ++ + V KK R + A T +YV N++ LRE
Sbjct: 190 AAIENVNGMLLNDHEVYVG-PHLAKKDRQSKMRELIANFT--NVYVKNINLNWDEDKLRE 246
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS F +SS + + G+S G+GFV+F E+A A+ L+ K++ G+ L + QK
Sbjct: 247 TFSP-FGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQK 305
Query: 254 NDDVSESNKEE 264
+ ES K +
Sbjct: 306 KSERMESLKHQ 316
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMAS 128
E TQ LYV L S + +++ +F+P G V + + + K +A+V S
Sbjct: 38 ESTQNSETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQS 97
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
+ + A+ + + + G+ R+ +++ + P +R+ S +++ NL + +
Sbjct: 98 HADGEKALEELNYTPIKGKACRIMWSQ--RDPSLRRNGSG-------NIFIKNLHPAIDN 148
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
L + FSA +S K+ + N G S G+GFV + E A+AAI +++G
Sbjct: 149 KTLHDTFSAFGKILSCKIATDEN-GNSKGFGFVHYEESESAKAAIENVNG 197
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S A+++ F P GT+ +++ GK++ F FV +SPEEA A+ +
Sbjct: 333 LFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMH 392
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ V+G+ + V A++ + R Q S AR
Sbjct: 393 QRMVAGKPLYVALAQRKEVRRSQLSQQIQAR 423
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
ET LYV L V + L E FS + +V ++ +S GY +V+F + + E
Sbjct: 44 ETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEK 103
Query: 232 AISSLDGKELMGRPLRLKFGQKN 254
A+ L+ + G+ R+ + Q++
Sbjct: 104 ALEELNYTPIKGKACRIMWSQRD 126
>gi|119195917|ref|XP_001248562.1| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
gi|392862234|gb|EAS37139.2| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
Length = 496
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ +++ F G + V I+ + G++R F +V + E+A A
Sbjct: 264 LFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEFTNAEDASKAFKAK 323
Query: 140 DTQEVSGRIIRVEFAKKFK-----KPRPQRSASAPARETQ---HKLYVSNLSWKVRSTHL 191
E+ GR I ++FA + + R Q A + +T L++ N+S+ +
Sbjct: 324 KDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFGDQTSPESDTLFIGNISFNADENAV 383
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+E FS++ + + ++ + GR G+G+V F++ +EA +A ++L G EL GR +RL F
Sbjct: 384 QETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNALQGTELAGRAMRLDF 442
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L++ N+ ++ ++ F+ G+++ + + + G+ + F +V +S +EA++A N
Sbjct: 369 LFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNAL 428
Query: 140 DTQEVSGRIIRVEFA 154
E++GR +R++F+
Sbjct: 429 QGTELAGRAMRLDFS 443
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N FS ++ +F G + +++ GK++ F FV PE A+ AV +
Sbjct: 194 VYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLN 253
Query: 141 TQE-VSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+E V G+ + V A+K K+ Q +R LYV N+ + LR
Sbjct: 254 GKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERLR 313
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ F+ S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL + Q
Sbjct: 314 KEFTPFGTITSAKVMLE--DGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALAQ 371
Query: 253 KNDD 256
+ +D
Sbjct: 372 RKED 375
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + + G ++ + FV + E A ++++ +
Sbjct: 101 VFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVN 160
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++G+ + F KF PR +R + + +YV N LRE F +
Sbjct: 161 GMLLNGKRV---FVGKFI-PRKEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFE-KY 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-GRPLRLKFGQK 253
++S V ++G+S G+GFV+F E AE A++SL+GKE++ G+PL + QK
Sbjct: 216 GRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQK 270
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + K +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ +++ + P ++S +++ NL + + + + FS
Sbjct: 73 NYDPLKGKPIRIMWSQ--RDPSLRKSGVG-------NVFIKNLDKSIDNKAMYDTFSTFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ + Q++ + +S
Sbjct: 73 NYDPLKGKPIRIMWSQRDPSLRKSG 97
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A A+
Sbjct: 84 KRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQ 143
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--LYVSNLSWKVRSTHLREFF 195
+ + V IRV +A Q + SA +T + ++V +LS +V L + F
Sbjct: 144 TLNGRRVHQSEIRVNWAY-------QAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAF 196
Query: 196 SANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
S F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 197 SV-FGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNW 251
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 41/212 (19%)
Query: 95 IKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
+ F+ G+V + ++ K G++R + FV +A+ A++ D + + R IR +
Sbjct: 192 LTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNW 251
Query: 154 AKKFKKPR--PQRSASA-----------------------------PARETQHKLYVSNL 182
A + +P Q++ SA PA +T YV NL
Sbjct: 252 ANQKGQPSIAQQQAMSAVGMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQT--TCYVGNL 309
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ + + F NF V ES G+ F+ + E A AI L+G +
Sbjct: 310 TPYTTANDVVPLFQ-NFG-----YVVESRFQADRGFAFIKMDSHENAAQAICGLNGYNVN 363
Query: 243 GRPLRLKFGQ-KNDDVSESNKEEEDVSEDQSA 273
GRPL+ +G+ KN + N + QSA
Sbjct: 364 GRPLKCSWGKDKNSTNPQGNFDPSQAFSPQSA 395
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 95/189 (50%), Gaps = 15/189 (7%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
+ L+V NL W+ ++ F G +V II + G+ + F +V A+ +A A
Sbjct: 234 KNLFVGNLSWNIDEDWLRREFEGFGEIVGCRIITDRETGRGKGFGYVEFATSADAAKAQA 293
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRS----------ASAPARETQHKLYVSNLSWKVR 187
+ E+ GR + V+F+ +KP ++ SAP+ + L++ NLS+
Sbjct: 294 EMHQYELDGRPLNVDFSTPRQKPDAGKTNDRANKYGDKRSAPS----NTLFLGNLSFDCT 349
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ ++E F+ N + + + G G+G+V F ++EEA AA+ +L+G+++ GR +R
Sbjct: 350 NDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALDALNGQDIAGRNIR 409
Query: 248 LKFGQKNDD 256
+ + +D
Sbjct: 410 IDYAAPRED 418
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V NLSW + LR F V +++ + GR G+G+V FAT +A A + +
Sbjct: 236 LFVGNLSWNIDEDWLRREFEGFGEIVGCRIITDRETGRGKGFGYVEFATSADAAKAQAEM 295
Query: 237 DGKELMGRPLRLKFG--QKNDDVSESNKEEEDVSEDQSAES 275
EL GRPL + F ++ D ++N + +SA S
Sbjct: 296 HQYELDGRPLNVDFSTPRQKPDAGKTNDRANKYGDKRSAPS 336
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL A+ + +F P G V V + + GK+R F FV + E A AV + +
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+ G+ + V A+K K+ ++ L+V NL + S L E
Sbjct: 301 DKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEE 360
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V + G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+
Sbjct: 361 EFKP-FGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 254 ND 255
D
Sbjct: 420 KD 421
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
++N +++ NL + + + F+ G ++ ++ + G+++ F FV + E A+
Sbjct: 141 RRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAE 200
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
AA+ + ++ R + F K R + S + +YV NL+ +V + E
Sbjct: 201 AAIENVNGMLLNDREV---FVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEE 257
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F PV+S + EG+S G+GFV+F E A A+ ++ KE+ G+ L + QK
Sbjct: 258 IFKP-FGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S +++ F P GT+ ++ GK++ F FV +SPEEA A+ + +
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMN 403
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ + G+ + V A++ R Q AR
Sbjct: 404 QRMIQGKPLYVALAQRKDVRRSQLEQQIQAR 434
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V + A+ +
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V GR R+ ++ QR S R +++ NL + + L + FSA F
Sbjct: 120 NYSLVDGRPCRIMWS--------QRDPSL-RRNGDGNIFIKNLHPAIDNKALHDTFSA-F 169
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V G+S +GFV + T E AEAAI +++G L R
Sbjct: 170 GRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 214
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV L+ V L E FS S +V ++ +S GY +V+F + AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + GRP R+ + Q++
Sbjct: 120 NYSLVDGRPCRIMWSQRD 137
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N FS ++++F G + +++ + G +R F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQE-VSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKL 177
P+ A+ A + + +E V G+ + V E K+ K+ Q + R L
Sbjct: 230 FEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 289
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E +GRS G+GFV F++ EEA A++ ++
Sbjct: 290 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 347
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 348 GRIVGTKPLYVALAQRKED 366
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 64 NFDMIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKAIDNKAMYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + N G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVAQDEN-GASKGYGFVHFETEEAANKSIEKVNGMLLNGK 158
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 64 NFDMIKGRPIRIMWSQRDPSLRKSG 88
>gi|45201486|ref|NP_987056.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|44986420|gb|AAS54880.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|374110307|gb|AEY99212.1| FAGR390Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + A +K F G + +V+++ K + N+AFV P +A A
Sbjct: 35 RILYVGNLDKTINEATLKQYFQVGGPIANVKVLVDKNNEEANYAFVEYRQPRDANVAFQT 94
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D +++ +I++ +A F+ Q+ +S + L+V +L+ V L F
Sbjct: 95 LDGKQIENNVIKINWA--FQS---QQVSS----DDTFNLFVGDLNVDVDDETLSSTFKEF 145
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ + V+++ GRS GYGFVSF +EEA+ A+ + G L GR +R+ + K
Sbjct: 146 PTFIQAHVMWDMQSGRSRGYGFVSFGEQEEAQKAMDAKQGFNLNGRAIRVNWAAK 200
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 166 ASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
A+ RET + LYV NL + L+++F P+++ V A Y FV +
Sbjct: 25 ATKGGRETSDRILYVGNLDKTINEATLKQYFQVG-GPIANVKVLVDKNNEEANYAFVEYR 83
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+A A +LDGK++ +++ + ++ VS +
Sbjct: 84 QPRDANVAFQTLDGKQIENNVIKINWAFQSQQVSSDD 120
>gi|45198625|ref|NP_985654.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|44984635|gb|AAS53478.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|374108884|gb|AEY97790.1| FAFR107Wp [Ashbya gossypii FDAG1]
Length = 396
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 7/176 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
++V L WS +K F G VV +I +G K+R + +V A+ AV +
Sbjct: 169 IFVGRLSWSVDDEWLKTEFDHIGGVVGARVIYERGTDKSRGYGYVDFEDVSYAEKAVKEM 228
Query: 140 DTQEVSGRIIRVEFA--KKFKKPRPQRS---ASAPARETQHKLYVSNLSWKVRSTHLREF 194
+E+ GR I + + K PR R+ P++ + L++ NLS+ L E
Sbjct: 229 HGKEIDGRAINCDMSTSKPASAPREDRAKKYGDTPSQPSD-TLFLGNLSFNADRDALFEL 287
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
FS + N +S ++ + G+G+V + + EEA+AA+ +L G+ + RP+R+ F
Sbjct: 288 FSKHGNVISVRIPTHPESNQPKGFGYVQYGSVEEAQAALDALQGEYIDNRPVRIDF 343
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
L++ NL ++ + LF+ G V+ V I H + + + F +V S EEAQAA++
Sbjct: 270 LFLGNLSFNADRDALFELFSKHGNVISVRIPTHPESNQPKGFGYVQYGSVEEAQAALDAL 329
Query: 140 DTQEVSGRIIRVEFAKKFKKPRP 162
+ + R +R++F+ PRP
Sbjct: 330 QGEYIDNRPVRIDFS----SPRP 348
>gi|380091978|emb|CCC10246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 456
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W A + F C ++ + G++R F +V + ++AQ A +
Sbjct: 169 LWVGNLGWGIDDAILFAEFEECEGAKSARVVTDRESGRSRGFGYVDFENNDQAQKAYDAK 228
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+ GR +R++FA K +PQ A A R +H L+V N+ + +
Sbjct: 229 SGGLLEGREMRLDFASKDAGNKPQ--AKAADRAAKHGDTISPESDTLFVGNMPFTADESA 286
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ +FF++ + S ++ + GR G+ +V+F + E+A+ A L+G +L GRP+RL +
Sbjct: 287 VSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIEDAKNAFDQLNGSDLQGRPVRLDY 346
Query: 251 GQKND 255
+ D
Sbjct: 347 AKPRD 351
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P+++ + + + L+V NL W + L F S++VV + GRS G+G+V
Sbjct: 154 PKKAKTEEVADDKSTLWVGNLGWGIDDAILFAEFEECEGAKSARVVTDRESGRSRGFGYV 213
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F ++A+ A + G L GR +RL F K+
Sbjct: 214 DFENNDQAQKAYDAKSGGLLEGREMRLDFASKD 246
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + EIK+LF+ G V ++I+ K G++ + FV P++A+ A+
Sbjct: 26 KTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAI 85
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A A LYVS L + L F
Sbjct: 86 NTLNGLRLQAKTIKVSYA------RPSSQAIKDA-----NLYVSGLPKTMTQQDLEGLFE 134
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
A+ ++S+++F+ G+S G GFV F + EAE AI+ L+G G P+ +KF
Sbjct: 135 AHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKF 190
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 39/230 (16%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGK 117
LQ T++ + Q I+ LYV LP + + +++ LF G ++ I+ G+
Sbjct: 93 LQAKTIKVSYARPSSQAIKDANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQ 152
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFA----KKFKKPRPQRSASAPAR 171
+R FV EA+ A+ + + G I V+FA + K Q + APAR
Sbjct: 153 SRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPAR 212
Query: 172 E-------------------------------TQHKLYVSNLSWKVRSTHLREFFSANFN 200
T ++V NL+ + L + F
Sbjct: 213 RYLGPMLHQTARFRYSPMGADPMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGA 272
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ KV+ + + G+GFV+ A +EA AI+ L+G L GR L++ F
Sbjct: 273 VTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQLNGYCLGGRVLQVSF 322
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + ++ FS+ S K++ + G+S GYGFV
Sbjct: 14 PDGRTGSSTEDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFV 73
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ ++AE AI++L+G L + +++ +
Sbjct: 74 NYVKPQDAEKAINTLNGLRLQAKTIKVSY 102
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N +K +F+ G + V+++ GGK++ F FV+ S E A+ AV + +
Sbjct: 291 VYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMN 350
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL-R 192
++V+G+++ V A+K K+ Q R KLY+ NL + L R
Sbjct: 351 GKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWR 410
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
EF ++F + S+V EGRS G+G + F++ EEA A++ ++G+ L +PL + Q
Sbjct: 411 EF--SSFGSI-SRVKIMREEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQ 467
Query: 253 K 253
+
Sbjct: 468 R 468
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 34/253 (13%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQ 73
FS + P L I++ + SL Y NF + T+ ++ KP + +Q
Sbjct: 129 FSAVGPVL--SIRICRDLVTRRSLGYAYVNFLKLADAQKALDTMNFDMIKGKPIRLMWSQ 186
Query: 74 KQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ RK +++ NL S + F+ G ++ +++ G +R +AFV +
Sbjct: 187 RDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQN 245
Query: 129 PEEAQAAVNQFDTQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQHKL------YVS 180
A A+ +E++G +++ F +FK R R A E Q+K+ YV
Sbjct: 246 QNAADRAI-----EEMNGALLKDCRLFVGRFKN-RKDREA-----ELQNKVNEFTNVYVK 294
Query: 181 NLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240
N + L+E FS +S KV+ +S G+S G+GFVSF + E A+ A+ ++GK+
Sbjct: 295 NFGDDMDDERLKEVFSKYGKTLSVKVMTDSG-GKSKGFGFVSFDSHEAAKKAVEEMNGKD 353
Query: 241 LMGRPLRLKFGQK 253
+ G+ L + QK
Sbjct: 354 VNGQLLFVGRAQK 366
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + ++ +A+V +AQ A++
Sbjct: 111 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 170
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FSA
Sbjct: 171 NFDMIKGKPIRLMWS--------QRDAYL-RKSGIGNVFIKNLDKSIDNKTLYEHFSAFG 221
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+SSKV+ S++ S GY FV F + A+ AI ++G L
Sbjct: 222 KILSSKVM--SDDQGSRGYAFVHFQNQNAADRAIEEMNGALL 261
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
A+ Q LYV +LS V L + FSA +S ++ + RS GY +V+F +A
Sbjct: 104 AKYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADA 163
Query: 230 EAAISSLDGKELMGRPLRLKFGQKN 254
+ A+ +++ + G+P+RL + Q++
Sbjct: 164 QKALDTMNFDMIKGKPIRLMWSQRD 188
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN--- 137
+YV NL S S E+ +F G I++ GK++ F FV + ++A AV+
Sbjct: 220 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 279
Query: 138 --QFDTQE--VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
FD +E V + E + K+ Q A + LYV NL V LRE
Sbjct: 280 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 339
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V G S G GFV+F+T EEA AI+ ++GK ++ +PL + Q+
Sbjct: 340 HF-APFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQR 398
Query: 254 NDD 256
+D
Sbjct: 399 KED 401
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ F+ G VV V + + + + + +V A+P++A A+N+
Sbjct: 41 LYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 100
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++GR IRV ++ + P ++S +++ NL + L E FSA F
Sbjct: 101 NFMALNGRAIRVMYS--VRDPSLRKSGVG-------NIFIKNLDKSIDHKALHETFSA-F 150
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
P+ S V G+S GYGFV + T E A+ AI L+G L
Sbjct: 151 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLL 192
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ ++ G+++ + FV + E AQ A+++ +
Sbjct: 129 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLN 188
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F K QR S + + +YV NLS + L + F F
Sbjct: 189 GMLLNDKQVYVGPFVHKL-----QRDPSGEKVKFTN-VYVKNLSESLSDEELNKVF-GEF 241
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
+S V+ EG+S G+GFV+F ++A A+ +L+GK
Sbjct: 242 GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 281
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E FS VS +V + RS GYG+V++AT ++A A++ L
Sbjct: 41 LYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 100
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L GR +R+ + ++ + +S
Sbjct: 101 NFMALNGRAIRVMYSVRDPSLRKSG 125
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ LPWS + E+K FA CG V I + G++ AFVT A+ E A+AA+ D
Sbjct: 251 IFIAGLPWSATEDEVKEHFAGCGEVTGARI-PLQNGRSSGTAFVTFATSEAAEAAL-AMD 308
Query: 141 TQEVSGRIIRVEFAKKFK--KPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
Q+ GR +++ A+K +P+ S +++ NLSW V +RE F
Sbjct: 309 GQDFGGRWMKIRTAEKKNMFDEKPEGCTS---------VFIGNLSWDVDENTVRETFGEC 359
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+S ++ + G G+G V FA+ E + A+ L G + GR +R+ + + D+
Sbjct: 360 GEILSCRLATDRETGEFRGFGHVDFASTEAVDEAV-KLAGSYVNGRAIRVNYAKSRDN 416
>gi|336267120|ref|XP_003348326.1| hypothetical protein SMAC_02824 [Sordaria macrospora k-hell]
Length = 377
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W A + F C ++ + G++R F +V + ++AQ A +
Sbjct: 169 LWVGNLGWGIDDAILFAEFEECEGAKSARVVTDRESGRSRGFGYVDFENNDQAQKAYDAK 228
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTH 190
+ GR +R++FA K +PQ A A R +H L+V N+ + +
Sbjct: 229 SGGLLEGREMRLDFASKDAGNKPQ--AKAADRAAKHGDTISPESDTLFVGNMPFTADESA 286
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ +FF++ + S ++ + GR G+ +V+F + E+A+ A L+G +L GRP+RL +
Sbjct: 287 VSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIEDAKNAFDQLNGSDLQGRPVRLDY 346
Query: 251 GQKND 255
+ D
Sbjct: 347 AKPRD 351
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P+++ + + + L+V NL W + L F S++VV + GRS G+G+V
Sbjct: 154 PKKAKTEEVADDKSTLWVGNLGWGIDDAILFAEFEECEGAKSARVVTDRESGRSRGFGYV 213
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F ++A+ A + G L GR +RL F K+
Sbjct: 214 DFENNDQAQKAYDAKSGGLLEGREMRLDFASKD 246
>gi|225561960|gb|EEH10240.1| nucleic acid-binding protein [Ajellomyces capsulatus G186AR]
Length = 325
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++K A GT+ V I+ G +R FA+V S E A+AA+++ +
Sbjct: 119 IYVGNLFFEVTAEDLKRDMAKFGTIYSVRIVYDSRGMSRGFAYVQFDSVEAAEAAISEMN 178
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
GR I V ++ + P+ AS P + L++ NLS+++ L + F N
Sbjct: 179 MSIYEGRRIVVNYSTR-NSAAPRTRASEPTK----TLFIGNLSFEMTDRELNDLFRDIPN 233
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
+V + GR G+ F E A+AA+ L K GRPLRL + D+
Sbjct: 234 VDDVRVSVDKRTGRPRGFAHADFLDVESAKAAMEILKEKAPYGRPLRLDYSLNTKDM 290
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ NI Y+ N +K++F+ G + V+++ GK++
Sbjct: 234 KDREAELRSKASEFTNI----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 289
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-----------FKKPRPQRSASAP 169
F FV+ S E A+ AV + + ++++G++I V A+K F++ + +R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQ 349
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
KLY+ NL + LR FS+ F + S+V EG+S G+G + F++ E+A
Sbjct: 350 G----VKLYIKNLDDTIDDEKLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDA 403
Query: 230 EAAISSLDGKELMGRPLRLKFGQKN 254
A++ ++G+ L +PL + Q++
Sbjct: 404 TKAMTEMNGRILGSKPLSIALAQRH 428
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 217 GKLLKGCKV---FVGRFKN-RKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYG 272
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 273 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 130 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 181 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 164 RSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
R + A+ LYV +L V L FS +S ++ + RS GY +V+F
Sbjct: 57 REMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNF 116
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+A+ A+ +++ + G+ +RL + Q++
Sbjct: 117 LQLADAQKALDTMNFDIIKGKSIRLMWSQRD 147
>gi|326926008|ref|XP_003209198.1| PREDICTED: nucleolin-like [Meleagris gallopavo]
Length = 425
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 127/270 (47%), Gaps = 32/270 (11%)
Query: 5 EAAATSIFLTNHPF-----SFSCLFPKLPHCIKLLHSSNSTPSLSY-NFPTRNLCLQVCS 58
E A ++F+ N P+ +F +L+ S+ ++Y F T +
Sbjct: 108 ERDARTLFVKNLPYRVTEEEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 167
Query: 59 TLQDTTVETKP-------EQTQKQNIR------RKLYVFNLPWSFSVAEIKNLFAPCGTV 105
Q T V+ + E++Q++N + + L V NL ++ S ++ LF
Sbjct: 168 EKQGTEVDGRAMVIDYTGEKSQQENQKGGERESKTLIVNNLSYAASEETLQELFKKA--- 224
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
+++ ++ G+ + +AFV + E+A+ A+N + E+ GR IR+EF+ P Q+
Sbjct: 225 TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSS----PSWQKG 280
Query: 166 ---ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
A + L+V LS LRE F + +S+++V + + G S G+GFV
Sbjct: 281 NMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVD 337
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F++ E+A+AA +++ E+ G + L F +
Sbjct: 338 FSSPEDAKAAKEAMEDGEIDGNKVILDFAK 367
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+ +K+ R L+V NLP+ + E+KN+F ++V ++ +K G ++ A++ +
Sbjct: 104 ENKKERDARTLFVKNLPYRVTEEEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEA 160
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190
EA+ A+ + EV GR + +++ + + Q+ RE++ L V+NLS+
Sbjct: 161 EAEKALEEKQGTEVDGRAMVIDYTGEKSQQENQKGGE---RESKT-LIVNNLSYAASEET 216
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L+E F +S + ++N+GR GY FV F T E+A+ A++S + E+ GR +RL+F
Sbjct: 217 LQELFK----KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 272
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 159 KPRPQRSASAPARETQHKLYVSNLS----WKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
K R Q+ A A L++ NL+ ++ T ++EFF VS + G
Sbjct: 10 KKRKQKVTPASA----FSLFMKNLTPTKDYEELKTAIKEFFGKKNLQVSEVRI-----GS 60
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
S +G+V F + E+ + A+ L+GK+LMG ++L+ + + + E+ KE +
Sbjct: 61 SKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERD 110
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + EIK+LF+ G V ++I+ K G++ + FV P++A+ A+
Sbjct: 22 KTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAI 81
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A RP A A LYVS L + L F
Sbjct: 82 NTLNGLRLQAKTIKVSYA------RPSSQAIKDA-----NLYVSGLPKTMTQQDLEGLFE 130
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
A+ ++S+++F+ G+S G GFV F + EAE AI+ L+G G P+ +KF
Sbjct: 131 AHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKF 186
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 39/230 (16%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGK 117
LQ T++ + Q I+ LYV LP + + +++ LF G ++ I+ G+
Sbjct: 89 LQAKTIKVSYARPSSQAIKDANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQ 148
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFA----KKFKKPRPQRSASAPAR 171
+R FV EA+ A+ + + G I V+FA + K Q + APAR
Sbjct: 149 SRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPAR 208
Query: 172 E-------------------------------TQHKLYVSNLSWKVRSTHLREFFSANFN 200
T ++V NL+ + L + F
Sbjct: 209 RYLGPMLHQTARFRYSPMGADPMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGA 268
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ KV+ + + G+GFV+ A +EA AI+ L+G L GR L++ F
Sbjct: 269 VTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQLNGYCLGGRVLQVSF 318
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + ++++ L V+ L + ++ FS+ S K++ + G+S GYGFV
Sbjct: 10 PDGRTGSSTKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFV 69
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ ++AE AI++L+G L + +++ +
Sbjct: 70 NYVKPQDAEKAINTLNGLRLQAKTIKVSY 98
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N+ + AE ++L P G + V + + + G ++ F FV + E A+ AV++ +
Sbjct: 231 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELN 290
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ + + E + KK ++ A+ LY+ NL + LR
Sbjct: 291 EKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRLRA 350
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V + G S G+GFV +++ +EA A+S ++GK + +PL + Q+
Sbjct: 351 EFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 409
Query: 254 ND 255
D
Sbjct: 410 KD 411
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + FA G ++ ++ + GK+R FAFV ++ E A AA+ +
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 197
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + V KK R + A+ T +Y+ N+ +V + F
Sbjct: 198 GMLLNDKKVYVGH-HVGKKERLSKVEELRAQFT--NVYIKNVDLEVTDAEFEDLVKP-FG 253
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
P S + +G S G+GFV++ E A+ A+ L+ KE+ G+ L
Sbjct: 254 PTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKL 299
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL + ++ F GT+ ++++ G +R F FV +SP+EA AV++ +
Sbjct: 334 LYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMN 393
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+ + + + V A++ K R Q S A+ Q ++
Sbjct: 394 GKMIGTKPLYVALAQR-KDVRRQALESQIAQRAQQRM 429
>gi|171687054|ref|XP_001908468.1| hypothetical protein [Podospora anserina S mat+]
gi|170943488|emb|CAP69141.1| unnamed protein product [Podospora anserina S mat+]
Length = 481
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 87 KRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGSAERAMQ 146
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + V IRV +A + + +++ ++V +LS +V L + FSA
Sbjct: 147 TLNGRRVHQAEIRVNWAYQSNNTNKEDTSN------HFHIFVGDLSNEVNDEVLLQAFSA 200
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F VS ++V+++ GRS GYGFV+F + EAE A+SS+DG+ L R +R +
Sbjct: 201 -FGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNW 253
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + + K++ + N + YGFV
Sbjct: 79 RRAAPEPNKRA---LYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVE 134
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
+ AE A+ +L+G+ + +R+ + ++++ +NKE+
Sbjct: 135 YDDPGSAERAMQTLNGRRVHQAEIRVNWAYQSNN---TNKED 173
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN--- 137
+YV NL S S E+ +F G I++ GK++ F FV + ++A AV+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 138 --QFDTQE--VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
FD +E V + E + K+ Q A + LYV NL V LRE
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V G S G GFV+F+T EEA AI+ ++GK ++ +PL + Q+
Sbjct: 346 HF-APFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Query: 254 NDD 256
+D
Sbjct: 405 KED 407
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ F G VV V + + + + + +V A+P++A A+N+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++GR IRV ++ + P ++S +++ NL + L E FSA F
Sbjct: 107 NFMALNGRAIRVMYS--VRDPSLRKSGVG-------NIFIKNLDKSIDHKALHETFSA-F 156
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
P+ S V G+S GYGFV + T E A+ AI L+G L
Sbjct: 157 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLL 198
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ ++ G+++ + FV + E AQ A+++ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F K QR S + + +YV NLS + L + F F
Sbjct: 195 GMLLNDKQVYVGPFVHKL-----QRDPSGEKVKFTN-VYVKNLSESLSDEELNKVF-GEF 247
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
+S V+ EG+S G+GFV+F ++A A+ +L+GK
Sbjct: 248 GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 287
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L E F+ VS +V + RS GYG+V++AT ++A A++ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L GR +R+ + ++ + +S
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSG 131
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L WS +KN FAP G VV +I +G ++R + +V A+ A+ +
Sbjct: 151 LFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEM 210
Query: 140 DTQEVSGRIIRVEF-----AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+E+ GR I V+ A R ++ P+ E L++ NLS+ +L E
Sbjct: 211 QGKEIDGRPINVDMSTSKPAGGASNDRAKKFGDVPS-EPSDTLFLGNLSFDADRDNLYEI 269
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F +S ++ + G+G+V + E+A+ A+ +L G+ + RP+RL F
Sbjct: 270 FGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPVRLDF 325
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ LF G + ++ GK++ F FV +PE+A+ AV +
Sbjct: 201 VYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 260
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
E+ G ++ + KK +RSA R Q K LYV NL V
Sbjct: 261 EYELPGTERKLYVCRAQKKN--ERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDD 318
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L++ F A S+KV+ + N GRS G+GFV F +EA A++ ++GK + +PL +
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDN-GRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 378 LAQRKED 384
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P +RS + +++ NL + + + + FS
Sbjct: 80 NFDMMYGKPIRIMWSQR--DPSMRRSGAG-------NIFIKNLDKSIDNKAIYDTFSMFG 130
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
N +S KV E S GYGFV F T+E A+ AI ++G L G+ +
Sbjct: 131 NILSCKVA-NDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKV 176
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS+ +S +V ++ RS GY +V+F +AE A+ ++
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + S
Sbjct: 80 NFDMMYGKPIRIMWSQRDPSMRRSG 104
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 45 YNFPTRNLCLQVCSTLQ----DTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIK 96
Y P L VC + ++ + EQ + + ++R LYV NL + + +K
Sbjct: 262 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILK 321
Query: 97 NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
F G + +++ G+++ F FV P+EA AV + + + + + + V A++
Sbjct: 322 QNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQR 381
Query: 157 FKKPRPQRSAS 167
K+ R + AS
Sbjct: 382 -KEDRKAQLAS 391
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++KN+F G + V ++ + G++R F FV + +A+ AV + +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++GR++ V E +KF++ + +R R LYV NL +
Sbjct: 253 GKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERI----QRYQGVNLYVKNLDDSIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F+ S+KV+ ++ G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFAPYGTITSAKVM--TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A++ P +A+ A++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ N+ + + L + FSA
Sbjct: 73 NYEVIKGRPIRIMWSQR--DPGLRKSGVG-------NIFIKNMDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NYEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++KN+F G + V ++ + G++R F FV + +A+ AV + +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++GR++ V E +KF++ + +R R LYV NL +
Sbjct: 253 GKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERI----QRYQGVNLYVKNLDDSIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F+ S+KV+ ++ G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFAPYGTITSAKVM--TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A++ P +A+ A++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ N+ + + L + FSA
Sbjct: 73 NYEVIKGRPIRIMWSQR--DPGLRKSGVG-------NIFIKNMDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NYEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 19/206 (9%)
Query: 65 VETKPEQTQKQ-------NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GG 116
+++PE+T K+ + L++ NL W+ + F G + V II + G
Sbjct: 219 ADSEPEETSKKAKTESNPDAVANLFIGNLSWNVDEEWLTREFEEFGELAGVRIITDRDSG 278
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK----------PRPQRSA 166
+++ F +V + E+A A+ + + R IRV+F+ K R Q+
Sbjct: 279 RSKGFGYVEFTNAEDAAKALEAKNESLLDNRNIRVDFSTPRDKSNAGPQQRSNDRQQKFG 338
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
AP T ++ NLS+ +RE+F+ + N S ++ + + G G+G+V +
Sbjct: 339 DAPGEPTAT-IWCGNLSFDATEDVVREYFAEHGNVNSIRLPTDRDTGAPKGFGYVEMGSV 397
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQ 252
EEA+AA ++L G+++ GRP+RL + Q
Sbjct: 398 EEAQAAFNALQGQDVGGRPVRLDYAQ 423
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L++ NLSW V L F +++ + + GRS G+G+V F E+A A+ +
Sbjct: 242 LFIGNLSWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFTNAEDAAKALEAK 301
Query: 237 DGKELMGRPLRLKFGQKND 255
+ L R +R+ F D
Sbjct: 302 NESLLDNRNIRVDFSTPRD 320
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL S + ++KN F G + ++K GK++ F FV + ++A AV
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLN 276
Query: 137 -NQFDTQE-VSGRI---------IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
++FD +E GR +RV + + K+ A + LYV NL
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE--------AADKFQSSNLYVKNLDPS 328
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ L+E FS F V+S V G S G GFV+F+T EEA A+S L GK + +P
Sbjct: 329 ISDEKLKEIFSP-FGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMIESKP 387
Query: 246 LRLKFGQKNDD 256
L + Q+ +D
Sbjct: 388 LYVAIAQRKED 398
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ + F+ G VV V + + + + + +V +P++A A+ +
Sbjct: 38 LYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IRV ++ + P +RS + +++ NL + L + FS
Sbjct: 98 NYIPLYGKPIRVMYSHR--DPSVRRSGAG-------NIFIKNLDESIDHKALHDTFSVFG 148
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N VS KV +S+ G+S GYGFV +A +E A+ AI L+G L
Sbjct: 149 NIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLL 189
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S S ++K +F+P GTV ++++ G ++ FV ++PEEA A++Q
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLS 379
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAP 169
+ + + + V A++ + R Q S P
Sbjct: 380 GKMIESKPLYVAIAQRKEDRRAQFSQVRP 408
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + FS VS +V + RS GYG+V+F ++A AI L
Sbjct: 38 LYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ + ++ V S
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSG 122
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +K +F G + V+++ GK++ F FV+ E+AQ AV++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMY 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ + +VE + K+ Q + R LYV NL + LR+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GKY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V + G+S G+GFVSF E+A+ A+ + GK++ G+ + + QK + +
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E +++D+
Sbjct: 275 ELKRKFEQMNQDR 287
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N+ + AE ++L P G + V + + + G ++ F FV E A+ AV++ +
Sbjct: 231 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELN 290
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV+G+ + + E + KK ++ A+ LY+ NL + LR
Sbjct: 291 EKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDRLRA 350
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V + G S G+GFV +++ +EA A+S ++GK + +PL + Q+
Sbjct: 351 EFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 409
Query: 254 ND 255
D
Sbjct: 410 KD 411
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + FA G ++ ++ + GK+R FAFV ++ E A AA+ +
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 197
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + V KK R + A+ T +Y+ N+ +V + F
Sbjct: 198 GMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTN--VYIKNVDLEVTDAEFEDLVKP-FG 253
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
P S + +G S G+GFV++ E A A+ L+ KE+ G+ L
Sbjct: 254 PTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKL 299
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL + ++ F GT+ ++++ G +R F FV +SP+EA AV++ +
Sbjct: 334 LYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMN 393
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+ + + + V A++ K R Q S A+ Q ++
Sbjct: 394 GKMIGTKPLYVALAQR-KDVRRQALESQIAQRAQQRM 429
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NL W + + ++F G DV ++ G++R F FVT+ A A +
Sbjct: 18 KLYVGNLSWGVTNDSLADVFNQYGAS-DVTVVTDMNTGRSRGFGFVTVPDQAVADACIAA 76
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ------HKLYVSNLSWKVRSTHLR 192
D +V GR IRV + + P+ + + K+Y NLSW + L+
Sbjct: 77 LDGADVDGRAIRVNVSVAREDRPPRPDRPPRDGQRRGYDFDGRKVYFGNLSWGMDHLDLQ 136
Query: 193 EFFSANFNPV-SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ F V ++++ + RS G+GFV+ +T EAE ++ L+G+++ GR LR+
Sbjct: 137 D-LCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQLNGQDVDGRVLRVNI 194
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
RK+Y NL W ++++L GTV D +I + ++R F FVTM++ EA+ VN
Sbjct: 119 RKVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVN 178
Query: 138 QFDTQEVSGRIIRVEFA 154
Q + Q+V GR++RV A
Sbjct: 179 QLNGQDVDGRVLRVNIA 195
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+A + E KLYV NLSW V + L + F+ + VV + N GRS G+GFV+
Sbjct: 7 DGAAVSGEEGVKLYVGNLSWGVTNDSLADVFN-QYGASDVTVVTDMNTGRSRGFGFVTVP 65
Query: 225 TKEEAEAAISSLDGKELMGRPLRL 248
+ A+A I++LDG ++ GR +R+
Sbjct: 66 DQAVADACIAALDGADVDGRAIRV 89
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NLP + E+ +F+ G V + + GK+R F FV + E A AV
Sbjct: 240 LYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALH 299
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++ G I+ V A+K R +R A Q K LY+ NL +
Sbjct: 300 DKDYKGNILYVARAQK----RVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDE 355
Query: 190 HLR-EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+ EF F ++S V + ++G S G+GFV F+ +EA A++ ++GK L +PL +
Sbjct: 356 KLQAEFLP--FGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYV 413
Query: 249 KFGQKND 255
Q+ D
Sbjct: 414 SLAQRKD 420
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L + + A + +F+ G V + + + ++ +A+V + +A+ A+ Q
Sbjct: 59 LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 118
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + R+ ++++ R + Q +++ NL + + L + F+A
Sbjct: 119 NYSLIKNKACRIMWSQRDPSLR---------KTGQGNIFIKNLDETIDNKALHDTFAAFG 169
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ +S KV +S G S GYGFV + T E AEAAI ++G +L
Sbjct: 170 DILSCKVAMDST-GASKGYGFVHYVTAESAEAAIKGVNGMQL 210
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFAT 225
++PA + LYV L V L E FS PVSS +V ++ RS GY +V++
Sbjct: 49 ASPASQPNTSLYVGELDPTVTEAMLYEIFSM-IGPVSSIRVCRDAVTRRSLGYAYVNYLN 107
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNK 262
+AE A+ L+ + + R+ + Q++ + ++ +
Sbjct: 108 AADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQ 144
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V L W+ +K+ F CG VV ++ K+R F +V A E + A+ +
Sbjct: 196 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLEASAKAIEK- 254
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-------LYVSNLSWKVRSTHLR 192
D E+ GR IRV +A + K P +A A+ K L++ +LS+ V +
Sbjct: 255 DGSEIDGRAIRVNYATQRK---PNEAAEKRAKVFNDKQSPPAETLWIGSLSFSVTEDQVY 311
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F + + S ++ + + G G+G+V F++ E+A AA+ +++G E+ GR +R+ F
Sbjct: 312 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAALKAMNGAEIAGRAIRVDFAP 371
Query: 253 KNDDVSE 259
D E
Sbjct: 372 PKQDNGE 378
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
E ++V LSW V + L+ F + VS++VVF+ + +S G+G+V FA E +
Sbjct: 191 EATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLEASAK 250
Query: 232 AISSLDGKELMGRPLRLKF 250
AI DG E+ GR +R+ +
Sbjct: 251 AIEK-DGSEIDGRAIRVNY 268
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 11/201 (5%)
Query: 65 VETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
V K Q++ +++ K +YV N+ S AE + LF G V + + + GK+R F
Sbjct: 230 VSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGF 289
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQ 174
FV + E+A AV + E R + V A+K +K Q +
Sbjct: 290 GFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNG 349
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
L+V NL + LR+ FS S+K++ + N G+S G+GFV F++ +EA AI+
Sbjct: 350 INLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDN-GKSKGFGFVCFSSPDEATKAIT 408
Query: 235 SLDGKELMGRPLRLKFGQKND 255
++ + + G+PL + Q+ D
Sbjct: 409 EMNQRMVSGKPLYVALAQRKD 429
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL ++ F+ GT+ +I+ GK++ F FV +SP+EA A+ + +
Sbjct: 352 LFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMN 411
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ VSG+ + V A++ R Q + AR
Sbjct: 412 QRMVSGKPLYVALAQRKDVRRSQLESQINAR 442
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEE-----AQA 134
LYV L S + A + LF G V + + + ++ +A+V + + +
Sbjct: 73 LYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGER 132
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
A+++ + + G+ R+ ++++ P +++ + +++ NL + + L +
Sbjct: 133 ALDELNYTLIKGKPCRIMWSQR--DPSLRKTGTG-------NVFIKNLDASIDNKALHDT 183
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
F+A + +S KV + G S GYGFV + T E AEAAI
Sbjct: 184 FTAFGSILSCKVAVDE-LGNSKGYGFVHYKTSESAEAAI 221
>gi|392579826|gb|EIW72953.1| hypothetical protein TREMEDRAFT_72942 [Tremella mesenterica DSM
1558]
Length = 475
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+YV L W+ + + F CG VV+ ++ H+ K++ F FV + EEA AV
Sbjct: 214 VYVGGLSWNVDNEWLASEFQSCGEVVEARVMFDHQNQKSKGFGFVRFKTAEEAAKAV-AM 272
Query: 140 DTQEVSGRIIRVEFA-KKFKKPRPQRSA------SAPARETQHKLYVSNLSWKVRSTHLR 192
E+ GR IR +FA +K P +R+ SAPA LY+ LS+ + +
Sbjct: 273 TGHEIDGRAIRCDFAAEKTDNPVERRAQKFNDQRSAPA----ATLYLGGLSYDLNEDAVY 328
Query: 193 EFFSANFNPVSSKVVFESNE-GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF- 250
E F +F + + E G G+G+V FA ++A AA+ +++GKEL GR +R+ +
Sbjct: 329 EAFG-DFGDIQRVSLPTDRETGAPKGFGYVEFADVDQATAALEAMNGKELSGRRIRVDYS 387
Query: 251 GQKND 255
G K D
Sbjct: 388 GPKPD 392
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 159 KPRPQRSASAPAR--------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
K + + A APA+ E +YV LSW V + L F + V ++V+F+
Sbjct: 188 KRKADQEAQAPAKKSRTDGEAEPTANVYVGGLSWNVDNEWLASEFQSCGEVVEARVMFDH 247
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+S G+GFV F T EEA A+ ++ G E+ GR +R F + D
Sbjct: 248 QNQKSKGFGFVRFKTAEEAAKAV-AMTGHEIDGRAIRCDFAAEKTD 292
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL E + LF+ G + I K + G ++ F FV + E+AQ AV + D
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELD 316
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+ G+ + V A+K +K Q + LY+ NL V LR
Sbjct: 317 NKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRA 376
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V +G S G+GFV F++ +EA A+S ++ K + +PL + Q+
Sbjct: 377 EFEP-FGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQR 435
Query: 254 ND 255
D
Sbjct: 436 KD 437
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 9/185 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + FA GTV+ ++ G ++ + FV S E A+AA+ +
Sbjct: 164 IFIKNLDQGIDNKALHDTFAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVN 223
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F + + ++S + LYV NL +V FS F
Sbjct: 224 GMLLNDKKV---FVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFS-QFG 279
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
P++S V+ + EG S G+GFV+F E+A+ A+ LD KE+ G+P+ + QK +S
Sbjct: 280 PITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQK-----KS 334
Query: 261 NKEEE 265
+EEE
Sbjct: 335 EREEE 339
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L +V L E F+ PV+S +V ++ RS GY +V++ + E A+
Sbjct: 76 LYVGELDPQVTEAMLFEIFNM-IGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQ 134
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNK 262
L+ ++ G+P R+ + Q++ + ++ +
Sbjct: 135 LNYSQIRGKPCRIMWSQRDPGLRKTGQ 161
>gi|367043706|ref|XP_003652233.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
gi|346999495|gb|AEO65897.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
Length = 533
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W + F V ++ K G++R F +V +PE A+ A N
Sbjct: 290 LFVGNLGWGVDDNALYEEFQNNEGVTGARVVTDKDSGRSRGFGYVDFETPEAAEKAYNDK 349
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRS 188
+ + GR +R++FA K P + +A A E K L+V NLS+
Sbjct: 350 NGAFLQGREMRLDFAAK---PSADSTPNARAAERARKHGDVISPESDTLFVGNLSFSANE 406
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ FF+ S ++ + GR G+ +V+F++ ++A+AA +L+G +L GRP+RL
Sbjct: 407 ESVSAFFNKVAKVQSLRIPTDQESGRPKGFAYVTFSSVDDAKAAFEALNGSDLDGRPVRL 466
Query: 249 KFGQKND 255
F + D
Sbjct: 467 DFAKPRD 473
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
SA A E L+V NL W V L E F N ++VV + + GRS G+G+V F
Sbjct: 278 SADGEASEKSATLFVGNLGWGVDDNALYEEFQNNEGVTGARVVTDKDSGRSRGFGYVDFE 337
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQK 253
T E AE A + +G L GR +RL F K
Sbjct: 338 TPEAAEKAYNDKNGAFLQGREMRLDFAAK 366
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 116/235 (49%), Gaps = 19/235 (8%)
Query: 31 IKLLHSSNSTPSLSYNF--------PTRNLCLQVCSTLQDTTVE---TKPEQTQKQNIRR 79
+++ S++ SL Y + R + L+ STL + ++ + ++N
Sbjct: 41 VRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIG 100
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NLP S A ++++F G ++ +++ + GK++ + FV S E + A+ +
Sbjct: 101 NLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKL 160
Query: 140 DTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ V + + V +F KK + P AR T LY+ NL V L+E FS+
Sbjct: 161 NGSTVGDKQLYVGKFVKKSDRILP----GPDARYTN--LYMKNLDLDVSEATLQEKFSS- 213
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F + S V+ + N G S G+GFV++ ++A+ A+ +++G +L + L + QK
Sbjct: 214 FGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARAQK 268
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL S A ++ F+ G +V + I K G ++ F FV +P++A+ A+ +
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMN 252
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ--------RSASAPARETQHKLYVSNLSWKVRSTHLR 192
++ +I+ V A+K K R Q + + +YV N+ V LR
Sbjct: 253 GSKLGSKILYVARAQK-KAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ FSA ++S + ++G S G+GFV F+T EEA A+++ G G+PL + Q
Sbjct: 312 DHFSA-CGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
Query: 253 KNDD 256
+ +D
Sbjct: 371 RKED 374
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E+ +K+ I + +YV N+ S E+++ F+ CG + +I++ G ++ F FV
Sbjct: 281 EEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVC 340
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
++PEEA AVN F G+ + V A++
Sbjct: 341 FSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P A+APA LYV +L V HL + FS + S +V +S+ G+S YG+V
Sbjct: 4 PPSVAAAPA-----SLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYV 58
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+F + ++A AI + L G+ +R+ + +++ D
Sbjct: 59 NFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPD 93
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 19/190 (10%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V NLP + A + ++F+ G + V I+K K++ F FV E+AQAAVN
Sbjct: 226 VFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNAL 285
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL-----------YVSNLSWKVRS 188
+ E++G+ + V A+K + +R A R +L YV NL +
Sbjct: 286 NGTELAGKTLFVARAQK----KAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDE 341
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPL 246
+R F A F ++S + +G+S G+GF+ F++ EEA A++ ++G+ + G +PL
Sbjct: 342 DKIRTEF-APFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPL 400
Query: 247 RLKFGQKNDD 256
+ Q+ +D
Sbjct: 401 YVALAQRAED 410
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 116/248 (46%), Gaps = 18/248 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQ---TQKQNIRRK---- 80
I++ + + SL Y NF + TL + + KP + +Q+ RK
Sbjct: 74 IRVCRDAITRRSLGYAYVNFHAAVDAERALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLG 133
Query: 81 -LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + + + F+ G ++ +++ + G ++ + FV + E A+ A+ +
Sbjct: 134 NVFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKV 192
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ + F F PR +R ++V NL L + FS F
Sbjct: 193 NGMVINGKQV---FVGIFV-PRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFS-KF 247
Query: 200 NPVSSKVVFES-NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
++S V+ +S ++ +S G+GFV + E+A+AA+++L+G EL G+ L + QK +
Sbjct: 248 GKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAERE 307
Query: 259 ESNKEEED 266
K+ D
Sbjct: 308 AELKQRYD 315
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + +I+ FAP GT+ V+I++ + GK+R F F+ +S EEA AV + +
Sbjct: 330 LYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMN 389
Query: 141 TQEVSG--RIIRVEFAKKFKKPRPQRSA 166
Q + G + + V A++ + R Q +A
Sbjct: 390 GQTIQGFPKPLYVALAQRAEDRRAQLAA 417
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV +L +V L E F+ N PV S +V ++ RS GY +V+F +AE A+ +
Sbjct: 47 LYVGDLHPEVTEAQLFEIFN-NIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDT 105
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESN 261
L+ + G+P R+ + Q++ V +S
Sbjct: 106 LNYSLIRGKPCRIMWSQRDPAVRKSG 131
>gi|255718453|ref|XP_002555507.1| KLTH0G10912p [Lachancea thermotolerans]
gi|238936891|emb|CAR25070.1| KLTH0G10912p [Lachancea thermotolerans CBS 6340]
Length = 436
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G++ +V+I+ K K N+AFV P +A A
Sbjct: 67 RILYVGNLDLAVTEEMLKQYFQVGGSIANVKILMDKNNKQANYAFVEFHQPHDANVAFQT 126
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
D +++ +I++ +A F+ Q+ +S E L+V +L+ V L F
Sbjct: 127 LDGKQIENHVIKINWA--FQS---QQVSS----EDTFNLFVGDLNVDVDDETLARTFKDI 177
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ + V+++ GRS GYGFVSF + +A+ A+ G + GR +R+ + K +
Sbjct: 178 PTFIQAHVMWDMQTGRSRGYGFVSFGEQTQAQKAMEDNQGAVVNGRAIRINWASKRE 234
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL A+ + +F P G V V + + GK+R F FV + E A AV + +
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 141 TQEVSGRIIRVEFAKKFKKPRP---QRSASAPARETQHK-----LYVSNLSWKVRSTHLR 192
+E+ G+ + V A+K K+ R +R + E K L+V NL + S L
Sbjct: 301 DKEIDGQKLYVGRAQK-KRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLE 359
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F F ++S V + G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q
Sbjct: 360 EEFKP-FGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQ 418
Query: 253 KND 255
+ D
Sbjct: 419 RKD 421
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
++N +++ NL + + + F+ G ++ ++ + G+++ F FV + E A+
Sbjct: 141 RRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAE 200
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
AA+ + ++ R + F K R + S + +YV NL+ +V + E
Sbjct: 201 AAIENVNGMLLNDREV---FVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEE 257
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F PV+S + EG+S G+GFV+F E A A+ ++ KE+ G+ L + QK
Sbjct: 258 IFKP-FGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S +++ F P GT+ ++ GK++ F FV +SPEEA A+ + +
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMN 403
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ + G+ + V A++ R Q AR
Sbjct: 404 QRMIQGKPLYVALAQRKDVRRSQLEQQIQAR 434
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V + A+ +
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V GR R+ ++ QR S R +++ NL + + L + FSA F
Sbjct: 120 NYSLVDGRPCRIMWS--------QRDPSL-RRNGDGNIFIKNLHPAIDNKALHDTFSA-F 169
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V G+S +GFV + T E AEAAI +++G L R
Sbjct: 170 GRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 214
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV L+ V L E FS S +V ++ +S GY +V+F + AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + GRP R+ + Q++
Sbjct: 120 NYSLVDGRPCRIMWSQRD 137
>gi|121710854|ref|XP_001273043.1| pre-mRNA splicing factor (Prp24), putative [Aspergillus clavatus NRRL
1]
gi|119401193|gb|EAW11617.1| pre-mRNA splicing factor (Prp24), putative [Aspergillus clavatus NRRL
1]
Length = 1310
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V N P + + I+NLF G ++DV K +R F +V S E+A AV Q D
Sbjct: 917 LFVTNFPSTADESYIRNLFHEYGEIIDVRFPSLKYNTHRRFCYVQFKSAEDAHNAV-QLD 975
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+V + K P ++ P E + +++VSN+ WK L++ FS +
Sbjct: 976 GSKVGSDL---NLVVKISDPSRKQDRHGPIYEGR-EIHVSNIDWKASEDDLKDLFS-KYG 1030
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
V + + +G S G+G++ F+TKEEA AA+ ++ +E RPL+++
Sbjct: 1031 RVETVRIPRKVDGGSKGFGYIVFSTKEEANAAL-AMHEQEFRSRPLQVRL 1079
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R+++V N+ W S ++K+LF+ G V V I + G ++ F ++ ++ EEA AA+
Sbjct: 1006 REIHVSNIDWKASEDDLKDLFSKYGRVETVRIPRKVDGGSKGFGYIVFSTKEEANAALAM 1065
Query: 139 FDTQEVSGRIIRVEFA 154
+ QE R ++V +
Sbjct: 1066 HE-QEFRSRPLQVRLS 1080
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 13/182 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +F+ G + V+++ GK++ F FV+ S E A+ AV + +
Sbjct: 192 VYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMN 251
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH---------KLYVSNLSWKVRSTHL 191
++++G+++ V A+K K Q + +H KLY+ NL + L
Sbjct: 252 GKDINGQLLFVGRAQK--KAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKL 309
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
R FS+ F +S +V EGRS G+G + F++ EEA A++ ++G+ L +PL +
Sbjct: 310 RREFSS-FGSIS-RVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALA 367
Query: 252 QK 253
QK
Sbjct: 368 QK 369
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G +R +AFV + A A+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAI---- 154
Query: 141 TQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQHK------LYVSNLSWKVRSTHLR 192
+E++G +++ F +FK R R A E Q+K +Y+ N ++ L
Sbjct: 155 -EEMNGALLKDCRLFVGRFK-SRKDREA-----EFQNKAHEFTNVYIKNFGDEMDDERLN 207
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E FS +S KV+ +S+ G+S G+GFVSF + E A+ A+ ++GK++ G+ L + Q
Sbjct: 208 EVFSKYGKTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQ 266
Query: 253 K 253
K
Sbjct: 267 K 267
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FSA
Sbjct: 72 NFDLIKGKSIRLMWS--------QRDAYLR-KSGIGNVFIKNLDRSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+SSKV+ S++ S GY FV F + A+ AI ++G L
Sbjct: 123 KILSSKVM--SDDHGSRGYAFVHFQNQIAADRAIEEMNGALL 162
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
A+ Q LYV +L V L + FSA +S ++ + RS GY +V+F +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 229 AEAAISSLDGKELMGRPLRLKFGQKN 254
A+ A+ +++ + G+ +RL + Q++
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRD 89
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ NI Y+ N +K++F+ G + V+++ GK++
Sbjct: 234 KDREAELRSKASEFTNI----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 289
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-----------FKKPRPQRSASAP 169
F FV+ S E A+ AV + + ++++G++I V A+K F++ + +R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
KLY+ NL + LR FS+ F + S+V EG+S G+G + F++ E+A
Sbjct: 350 G----VKLYIKNLDDTIDDEKLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDA 403
Query: 230 EAAISSLDGKELMGRPLRLKFGQKN 254
A++ ++G+ L +PL + Q++
Sbjct: 404 TKAMTEMNGRILGSKPLSIALAQRH 428
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 217 GKLLKGCKV---FVGRFKN-RKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYG 272
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 273 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 130 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 181 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
>gi|145348372|ref|XP_001418624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578854|gb|ABO96917.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 151
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 17/147 (11%)
Query: 116 GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK----KFKKP-------RPQR 164
G++R FAFVT+AS E+ + A+ + +V GR +RV A+ + +P RPQR
Sbjct: 6 GRSRGFAFVTLASAEDMERAMAATNGVDVDGRELRVSQAQTAGERRDRPMRMDGERRPQR 65
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPV-SSKVVFESNEGRSAGYGFVSF 223
+ A R ++Y NLSW + L++ F V S+++ + GRS G+GFV+
Sbjct: 66 NRDADNR----RVYFGNLSWGMDHLDLQDL-CGEFGSVEDSRLITDRETGRSRGFGFVTM 120
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ EA+ ++ L+G+++ GR LR+
Sbjct: 121 SSEAEADEVVAQLNGQDVDGRVLRVNI 147
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
E +P++ + + RR +Y NL W ++++L G+V D +I + G++R F FV
Sbjct: 60 ERRPQRNRDADNRR-VYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGFV 118
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
TM+S EA V Q + Q+V GR++RV A
Sbjct: 119 TMSSEAEADEVVAQLNGQDVDGRVLRVNIA 148
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 208 FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ N GRS G+ FV+ A+ E+ E A+++ +G ++ GR LR+ Q
Sbjct: 1 MDRNTGRSRGFAFVTLASAEDMERAMAATNGVDVDGRELRVSQAQ 45
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 9/195 (4%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E K N +Y+ N +K +F+ G +V V+++ GK++ F FV+
Sbjct: 177 EREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVS 236
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLY 178
+ E AQ AV + +++ G+++ V A+K K+ Q R KLY
Sbjct: 237 FDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLY 296
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + LR FS+ F +S V E EGRS G+G + F+ EEA A++ ++G
Sbjct: 297 IKNLDETIDEEQLRRAFSS-FGSMSRVKVMEE-EGRSKGFGLICFSCPEEATKAMAEMNG 354
Query: 239 KELMGRPLRLKFGQK 253
+ L + + + Q+
Sbjct: 355 QVLGSKAINIALAQR 369
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G +R +AFV S A A+
Sbjct: 100 VFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAI---- 154
Query: 141 TQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G +++ F FK R +R A + + +Y+ N + L+E FS
Sbjct: 155 -EEMNGALLKNCRLFVGPFKN-RKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQ 212
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
VS KV+ +S+ G+S G+GFVSF T E A+ A+ ++GK++ G+ + + QK
Sbjct: 213 YGKIVSVKVMTDSS-GKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQK 267
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + F P G V+ + I + ++ +A+V + +AQ ++
Sbjct: 12 LYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FSA
Sbjct: 72 NFDMIQGKSIRLMWS--------QRDAYLR-KSGIGNVFIKNLDRSIDNKMLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+SSKV+ S++ S GY FV F ++ A+ AI ++G L
Sbjct: 123 KILSSKVM--SDDKGSRGYAFVHFQSQSAADRAIEEMNGALL 162
>gi|226291029|gb|EEH46457.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 273
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 14/186 (7%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E KP +T +Y+ NL + + ++K + G ++ V I+ G +R FA+V
Sbjct: 78 EVKPNET--------IYIGNLFFEVTADDLKRDLSKFGNILAVRIVYDSRGMSRGFAYVQ 129
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK-KPRPQRSASAPARETQHKLYVSNLSW 184
S + A+AA+N+ + GR + V ++ + P P RS E L++ NLS+
Sbjct: 130 FDSIDAAEAAINEMNMTIYEGRRVVVNYSSRGSANPTPTRS-----NEPTRTLFIGNLSF 184
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
++ L E F N +V + G+ G+ F E A+AA L K GR
Sbjct: 185 EMSDRELNELFKDIKNVTDVRVSVDRRTGQPRGFAHADFLDVESAQAAFEILKDKAPYGR 244
Query: 245 PLRLKF 250
PLRL +
Sbjct: 245 PLRLDY 250
>gi|367034680|ref|XP_003666622.1| hypothetical protein MYCTH_2311474 [Myceliophthora thermophila ATCC
42464]
gi|347013895|gb|AEO61377.1| hypothetical protein MYCTH_2311474 [Myceliophthora thermophila ATCC
42464]
Length = 575
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 5/186 (2%)
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMA 127
P T + RR ++V L E+K F G V + +I+K + +++ +V
Sbjct: 184 PSPTGDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFK 243
Query: 128 SPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
+ EE+ AA Q Q++ G I++ A+K ++ R S+ P H+LYV N+ +
Sbjct: 244 N-EESVAAALQLTGQKLLGIPVIVQPTEAEKNRQARNSESSGHPNSIPFHRLYVGNIHFS 302
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ T L+ F F + + + + GRS GYGFV F +A A+ ++G +L GRP
Sbjct: 303 ITETDLQNVFEP-FGELEFVQLQKDDSGRSRGYGFVQFRDASQAREALEKMNGFDLAGRP 361
Query: 246 LRLKFG 251
+R+ G
Sbjct: 362 IRVGLG 367
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 10/195 (5%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E Q+ + +Y+ N+ + + E+ +F GT+ +++ G +R F FV P
Sbjct: 488 ELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDP 547
Query: 130 EEAQAAVNQFDTQEV-SGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSN 181
+EA+ AV + ++ G+ V A+K K+ Q R LYV N
Sbjct: 548 KEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKN 607
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
L + LR FSA S+KV+ + +GRS G+GFV F++ EEA A++ ++G+ +
Sbjct: 608 LDDTIDDERLRREFSAFGTIKSAKVMMD--DGRSKGFGFVYFSSPEEATKAVTDMNGRIV 665
Query: 242 MGRPLRLKFGQKNDD 256
+PL + Q+ D
Sbjct: 666 GTKPLYVTLAQRKKD 680
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 65 VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
++ K EQ + + I R LYV NL + ++ F+ GT+ +++ G +++
Sbjct: 583 LKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDG-RSKG 641
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
F FV +SPEEA AV + + V + + V A++ K + + R T ++
Sbjct: 642 FGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNMRM 698
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KLY+ NL +S +++++F G V DV + +G + R F FVT+++ + A+ A+ +
Sbjct: 20 KLYIGNLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAK 79
Query: 139 FDTQEVSGRIIRV-EFAKKFKKPRPQRS-----------ASAPARETQHKLYVSNLSWKV 186
D ++ GR IRV E + + P +RS A P KLYV NLS+
Sbjct: 80 MDQSQLDGRTIRVNESRPRGEGPGARRSNEPGTGPGGYGAFNPQGREDVKLYVGNLSFDT 139
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+R F + + + GR G+ FV+ K EAE A + ++G EL GR +
Sbjct: 140 NEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTMPAK-EAETACNKVNGMELDGRTV 198
Query: 247 RLKFGQ 252
R+ Q
Sbjct: 199 RVNEAQ 204
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V N F+ AE+ +F P G + + K GK++ F F+ + + A AV + +
Sbjct: 234 VFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELN 293
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+EV+G+ I V A+K ++ + Q + + ++++ L+V NL + S L E
Sbjct: 294 DKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEE 353
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F+ EEA AI+ ++ + ++G+PL + Q+
Sbjct: 354 EFKP-FGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQR 412
Query: 254 ND 255
D
Sbjct: 413 KD 414
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+ Q
Sbjct: 53 LYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQL 112
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++++ R R +++ NL + + L + FSA
Sbjct: 113 NYSLIDGRPCRIMWSQRDPSLR---------RNGDGNIFIKNLHPDIDNKALHDTFSAFG 163
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+S KV + + GRS +GFV + T E A+AAI +++G L R
Sbjct: 164 RILSCKVATDEH-GRSKCFGFVHYETAEAADAAIENVNGMSLNDR 207
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S + ++ F P GT+ +++ + GK++ F FV ++PEEA A+ + +
Sbjct: 337 LFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMN 396
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ V G+ + V A++ R Q AR
Sbjct: 397 QRMVLGKPLYVALAQRKDVRRSQLEQQIQAR 427
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
T LYV L+ V L E FS S +V ++ +S GY +V++ E+ E A
Sbjct: 49 TSASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERA 108
Query: 233 ISSLDGKELMGRPLRLKFGQKN 254
+ L+ + GRP R+ + Q++
Sbjct: 109 LEQLNYSLIDGRPCRIMWSQRD 130
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL SF+ ++KN F GT+ +++ G+++ F FV + E+A AV +
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALN 272
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH------------KLYVSNLSWKVRS 188
++V + V A+K + +R R Q LY+ NL +
Sbjct: 273 GKKVDDKEWYVGKAQK----KSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L+E FS F ++S + G S G GFV+F+T EEA A+ ++GK ++ +PL +
Sbjct: 329 EKLKEMFS-EFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYV 387
Query: 249 KFGQKNDD 256
Q+ +D
Sbjct: 388 AVAQRKED 395
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQ 133
Q + LYV +L + + +++ +LF G VV V + + + + + +V +P++A
Sbjct: 28 QFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAA 87
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A++ + ++ + IRV ++ + P ++S +A +++ NL + L +
Sbjct: 88 RALDVLNFTPMNNKSIRVMYSH--RDPSSRKSGTA-------NIFIKNLDKTIDHKALHD 138
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
FS+ F + S + G+S GYGFV F ++ A+ AI L+G
Sbjct: 139 TFSS-FGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNG 182
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ +I G+++ + FV + + AQ A+++ +
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLN 181
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F F R Q + ++ + +YV NLS L+ F A +
Sbjct: 182 GMLINDKQV---FVGHFL--RKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGA-YG 235
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S V+ +GRS +GFV+F E+A A+ +L+GK++
Sbjct: 236 TITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKV 276
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 70 EQTQKQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFV 124
EQT K+++ K LY+ NL S + ++K +F+ GT+ +I++ G +R FV
Sbjct: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFV 360
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
++PEEA A+ + + + + + + V A++
Sbjct: 361 AFSTPEEASRALGEMNGKMIVSKPLYVAVAQR 392
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + F+ VS +V + RS GYG+V+F ++A A+ L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + + +R+ + ++
Sbjct: 94 NFTPMNNKSIRVMYSHRD 111
>gi|212412|gb|AAA48983.1| nucleolin/C23, partial [Gallus gallus]
Length = 288
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 16/195 (8%)
Query: 62 DTTVETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN 118
D T E +++QK R+ L V NL ++ S ++ LF +++ ++ G+
Sbjct: 35 DYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRP 91
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS---ASAPARETQH 175
+ +AFV + E+A+ A+N +T E+ GR IR+EF+ P Q+ A +
Sbjct: 92 KGYAFVEFPTAEDAKEALNSCNTTEIEGRAIRLEFSS----PSWQKGNMNARGGFNQQSK 147
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
L+V LS LRE F + +S+++V + + G S G+GFV F++ E+A+AA +
Sbjct: 148 TLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEA 204
Query: 236 LDGKELMGRPLRLKF 250
++ E+ G + L F
Sbjct: 205 MEDGEIDGNKVTLDF 219
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
++ A++ + EA+ A+ + EV GR + +++ + + Q+ +T L
Sbjct: 1 SKGMAYIEFKTEREAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKT---L 57
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
V+NLS+ L+E F +S + ++N+GR GY FV F T E+A+ A++S +
Sbjct: 58 IVNNLSYAASEETLQELF----KKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 113
Query: 238 GKELMGRPLRLKF 250
E+ GR +RL+F
Sbjct: 114 TTEIEGRAIRLEF 126
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 65 VETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
+ K Q++ IR + +YV NL E + LF P GT+ + GK++ F
Sbjct: 277 IPRKERQSKLDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGF 336
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPARETQHK--- 176
FV + E AQ AV+ + ++++G+ + V A+K + +R+ A E K
Sbjct: 337 GFVNYETHEMAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQG 396
Query: 177 --LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
LY+ N+ + LR F + ++S + ++G S G+GFV F+T +EA AI+
Sbjct: 397 VNLYIKNIDDDMDDEKLRAEFEP-YGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIA 455
Query: 235 SLDGKELMGRPLRLKFGQKND 255
++ K + +PL + Q+ D
Sbjct: 456 EMNNKMIGSKPLYVSLAQRRD 476
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 6/180 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + F G V+ ++ + G ++ + FV + E A AA+ D
Sbjct: 203 IFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVD 262
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ + + V PR +R + Q +YV NL ++ R+ F +
Sbjct: 263 GMLLNDKKVYV----GRHIPRKERQSKLDEIRAQFTNIYVKNLDTEIDEDEFRKLFEP-Y 317
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
++S V+ +G+S G+GFV++ T E A+ A+ +L+ K++ G+ L + QK ++ E
Sbjct: 318 GTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRAQKRNERDE 377
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL S ++ F+ G ++ + + K G ++ F FV +PE+A+ A+ +
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMN 250
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ--------RSASAPARETQHKLYVSNLSWKVRSTHLR 192
++ +I+ V A+K K R Q + + +YV N+ V LR
Sbjct: 251 GLQLGSKILYVARAQK-KAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ FS S+K++ ++G S G+GFV F+T EEA A++S G G+PL + Q
Sbjct: 310 DHFSVCGTITSAKIM-RDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
Query: 253 KNDD 256
+ +D
Sbjct: 369 RKED 372
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S +++ + F+ T+ V I + GK+ + +V SP +A A+
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IRV ++++ P ++S ++V NL+ + ++ L + F
Sbjct: 72 NHSTLNGKAIRVMWSRR--DPDARKSCIG-------NVFVKNLAESIDNSGLEDMFKKFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +SSKVV S +G+S GYGFV F T+E A AAI L+G + + + + KF +K+D +S
Sbjct: 123 NILSSKVVM-SEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRIS 181
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 70 EQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
E+ ++Q ++ K +YV N+ + S +++ F+ CGT+ +I++ G ++ F FV
Sbjct: 280 EKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCF 339
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
++PEEA AVN F G+ + V A++
Sbjct: 340 STPEEANKAVNSFHGFMFHGKPLYVSLAQR 369
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
+ P T LYV +L + + L + FS S ++ +S+ G+S YG+V+F +
Sbjct: 2 AVPPSATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSP 61
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
+A AI + L G+ +R+ + +++ D +S
Sbjct: 62 HDAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKS 95
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 86 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQ 145
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + ++ + H ++V +LS +V L + F+
Sbjct: 146 NLNGRRVHQSEIRVNWAY-------QSNTTSKEDTSGHFHIFVGDLSNEVNDEVLTQAFT 198
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 199 S-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 252
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAE--IKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMAS 128
T K++ ++F S V + + F G+V + ++ K G++R + FV
Sbjct: 168 TSKEDTSGHFHIFVGDLSNEVNDEVLTQAFTSFGSVSEARVMWDMKTGRSRGYGFVAFRD 227
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR-----------------------PQRS 165
+A+ A++ D + + R IR +A + +P P +
Sbjct: 228 RPDAEKALSSMDGEWLGSRAIRCNWANQKGQPSMAQQQALQQVGMTPTTPFGHHHFPTQG 287
Query: 166 ASA--------PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
++ PA +T YV NL+ L F NF V ES G
Sbjct: 288 INSYEMVINQTPAWQT--TCYVGNLTPYTTQNDLVPLFQ-NFG-----YVVESRFQSDRG 339
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ-KNDDVSESNKEEEDVSEDQSAES 275
+ F+ + E A AI L+G + GRPL+ +G+ K + + ++ QSA++
Sbjct: 340 FAFIKLDSHENAAMAICQLNGYNVNGRPLKCSWGKDKTPNAQGFDPSQQSYGSPQSAQA 398
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ NI Y+ N +K++F+ G + V+++ GK++
Sbjct: 233 KDREAELRSKASEFTNI----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 288
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-----------FKKPRPQRSASAP 169
F FV+ S E A+ AV + + ++++G++I V A+K F++ + +R
Sbjct: 289 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 348
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
KLY+ NL + LR FS+ F + S+V EG+S G+G + F++ E+A
Sbjct: 349 G----VKLYIKNLDDTIDDEKLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDA 402
Query: 230 EAAISSLDGKELMGRPLRLKFGQKN 254
A++ ++G+ L +PL + Q++
Sbjct: 403 TKAMTEMNGRILGSKPLSIALAQRH 427
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 157 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 215
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 216 GKLLKGCKV---FVGRFKN-RKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYG 271
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 272 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 324
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 69 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 128
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 129 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 179
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 180 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 221
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N S ++ F+ G + V+++ G+++ F FV ++AQ AV +
Sbjct: 193 VYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E++GR++ V E +KF++ + +R + R LYV NL +
Sbjct: 253 GKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVS----RYQGVNLYVKNLDDGIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQ--RDPGLRKSGVG-------NIFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N R GYGFV F T E A AI++++G L R
Sbjct: 124 NILSCKVVCDENGSR--GYGFVHFETHEAANRAIATMNGMLLNDR 166
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G +R + FV + E A A+ +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A A+ + +Y+ N ++ + L+E FS F
Sbjct: 160 GMLLNDRKV---FVGNFKSRR-EREAEYGAKAMEFTNVYIKNFGEEMSNERLQETFSI-F 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
S V N GRS G+GFV+F ++A+ A+ ++GKE+ GR L + QK + S
Sbjct: 215 GKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQS 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +++
Sbjct: 275 ELKRKFEQIKQER 287
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N FS ++ +F G + +++ + G +R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQE-VSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKL 177
P+ A+ A + + +E V G+ + V E K+ K+ Q + R L
Sbjct: 239 FEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 298
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E +GRS G+GFV F++ EEA A++ ++
Sbjct: 299 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 357 GRIVGTKPLYVALAQRKED 375
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A+
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + F+A
Sbjct: 73 NFDIIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKTIDNKAMYDTFTAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGK 167
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSG 97
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ NI Y+ N +K++F+ G + V+++ GK++
Sbjct: 234 KDREAELRSKASEFTNI----YIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 289
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-----------FKKPRPQRSASAP 169
F FV+ S E A+ AV + + ++++G++I V A+K F++ + +R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
KLY+ NL + LR FS+ F + S+V EG+S G+G + F++ E+A
Sbjct: 350 G----VKLYIKNLDDTIDDEKLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDA 403
Query: 230 EAAISSLDGKELMGRPLRLKFGQKN 254
A++ ++G+ L +PL + Q++
Sbjct: 404 TKAMTEMNGRILGSKPLSIALAQRH 428
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N ++ L++ FS
Sbjct: 217 GKLLKGCKV---FVGRFKN-RKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYG 272
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 273 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 130 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 181 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N FS ++ +F G + +++ + G +R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVA 238
Query: 126 MASPEEAQAAVNQFDTQE-VSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKL 177
P+ A+ A + + +E V G+ + V E K+ K+ Q + R L
Sbjct: 239 FEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 298
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ E +GRS G+GFV F++ EEA A++ ++
Sbjct: 299 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ +D
Sbjct: 357 GRIVGTKPLYVALAQRKED 375
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A+
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 73 NFDIIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKTIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + G S GYGFV F T+E A +I ++G L G+
Sbjct: 124 NILSCKVA-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGK 167
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS +S +V + RS GY +V+F +AE A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSG 97
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 12/198 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E+ E+T+ N+ +V NL + S ++KN+F G + V +++ GK++ F FV
Sbjct: 199 ESVSEKTKFNNV----FVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVN 254
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK------KPRPQRSASAPARETQH-KLY 178
+ ++A +V + ++V G+ V A+K K R ++S A + Q LY
Sbjct: 255 FENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLY 314
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V NL + L+E F+ F ++S V G S G GFV+F++ EEA A++ ++G
Sbjct: 315 VKNLDDSIDDDKLKELFTG-FGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNG 373
Query: 239 KELMGRPLRLKFGQKNDD 256
+ ++ +PL + Q+ +D
Sbjct: 374 RMIVSKPLYVALAQRKED 391
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 11/168 (6%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQ 133
Q++ LYV +L + + +++ +LF G VV V + + ++ + +V ++P +A
Sbjct: 25 QHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDAS 84
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A++ + ++G IRV ++ + P ++S S +++ NL + L +
Sbjct: 85 RALDVLNFTPLNGNPIRVMYSH--RDPSVRKSGSG-------NIFIKNLDKAIDHKALHD 135
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
FSA + +S KV +S+ G+S G+GFV F T+E A AI L+G L
Sbjct: 136 TFSAFGSILSCKVATDSS-GQSKGFGFVQFDTEEAALKAIEKLNGMLL 182
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G+++ ++ G+++ F FV + E A A+ + +
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLN 178
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F F R Q S + + ++V NL+ L+ F F
Sbjct: 179 GMLLNDKQV---FVGPFL--RKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMF-GEFG 232
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
P++S VV EG+S +GFV+F ++A ++ +L+GK++ G+
Sbjct: 233 PITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGK 276
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 160 PRPQ--RSASAPARE---TQH---KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN 211
P+PQ S + PA QH LYV +L V + L + F+ VS +V +
Sbjct: 6 PQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLT 65
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
RS GYG+V+++ +A A+ L+ L G P+R+ + ++ V +S
Sbjct: 66 SRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSG 115
>gi|384490131|gb|EIE81353.1| hypothetical protein RO3G_06058 [Rhizopus delemar RA 99-880]
Length = 423
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 11/182 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++ L + + +++ F CG + DV I + GKNR F V A+ E +AA+
Sbjct: 202 IWCGGLNYQSTADDVREFFGSCGEIKDVRIRMDDATGKNRGFCHVDFATQEGKEAAL-AM 260
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSW----KVRSTHLREFF 195
E GR IR++ A + R ++ S + K++++NL+ + L E F
Sbjct: 261 SGNEFMGRKIRLDGADGSTRQRVKKEESYSS--ATSKVFIANLNHDHDEQSHRAALTEAF 318
Query: 196 SANFNPVSSKVVFESNE--GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
S F + + N G G G++ F TKE+AEAA+ + G E+ GRPLR F +
Sbjct: 319 S-QFGTIVGDIRLPYNRETGGLKGIGYIEFETKEQAEAAVKGMSGVEINGRPLRTDFSGE 377
Query: 254 ND 255
ND
Sbjct: 378 ND 379
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
+ ++ L+++ + +REFF + ++ + G++ G+ V FAT+E EAA+
Sbjct: 200 YTIWCGGLNYQSTADDVREFFGSCGEIKDVRIRMDDATGKNRGFCHVDFATQEGKEAAL- 258
Query: 235 SLDGKELMGRPLRL 248
++ G E MGR +RL
Sbjct: 259 AMSGNEFMGRKIRL 272
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 12/198 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E+ E+T+ N+ +V NL + S ++KN+F G + V +++ GK++ F FV
Sbjct: 199 ESVSEKTKFNNV----FVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVN 254
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK------KPRPQRSASAPARETQH-KLY 178
+ ++A +V + ++V G+ V A+K K R ++S A + Q LY
Sbjct: 255 FENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLY 314
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V NL + L+E F+ F ++S V G S G GFV+F++ EEA A++ ++G
Sbjct: 315 VKNLDDSIDDDKLKELFTG-FGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNG 373
Query: 239 KELMGRPLRLKFGQKNDD 256
+ ++ +PL + Q+ +D
Sbjct: 374 RMIVSKPLYVALAQRKED 391
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 11/168 (6%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQ 133
Q++ LYV +L + + +++ +LF G VV V + + ++ + +V ++P +A
Sbjct: 25 QHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDAS 84
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A++ + ++G IRV ++ + P ++S S +++ NL + L +
Sbjct: 85 RALDVLNFTPLNGNPIRVMYSH--RDPSVRKSGSG-------NIFIKNLDKAIDHKALHD 135
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
FSA + +S KV +S+ G+S G+GFV F T+E A AI L+G L
Sbjct: 136 TFSAFGSILSCKVATDSS-GQSKGFGFVQFDTEEAALKAIEKLNGMLL 182
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G+++ ++ G+++ F FV + E A A+ + +
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLN 178
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + F F R Q S + + ++V NL+ L+ F F
Sbjct: 179 GMLLNDKQV---FVGPFL--RKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMF-GEFG 232
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
P++S VV EG+S +GFV+F ++A ++ +L+GK++ G+
Sbjct: 233 PITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGK 276
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 160 PRPQ--RSASAPARE---TQH---KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN 211
P+PQ S + PA QH LYV +L V + L + F+ VS +V +
Sbjct: 6 PQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLT 65
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
RS GYG+V+++ +A A+ L+ L G P+R+ + ++ V +S
Sbjct: 66 SRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSG 115
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 98/182 (53%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL ++ E+K LF+ G + + K GK++ F FV + +A AV++ +
Sbjct: 234 VFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELN 293
Query: 141 TQEVSGRIIRVEFAKK----FKKPRPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K ++ R Q A+ + ++++ L++ NL + S L
Sbjct: 294 NKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSEKLEN 353
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V +G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+
Sbjct: 354 EFKP-FGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVALAQR 412
Query: 254 ND 255
D
Sbjct: 413 KD 414
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 110/234 (47%), Gaps = 15/234 (6%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRR 79
I++ + + SL Y NF + Q L + +E +P + + ++N
Sbjct: 80 IRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGEG 139
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + + + F+ G ++ ++ + G ++ F FV + E A+AA+
Sbjct: 140 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENV 199
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ R + F K + + S + ++V NL+ + L+E FSA +
Sbjct: 200 NGMLLNDREV---FVGKHVSKKDRESKFEEMKANFTNVFVKNLAPEYTDQELKELFSA-Y 255
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
P++S + + EG+S G+GFV+F +A A+ L+ KE+ G+P+ + QK
Sbjct: 256 GPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQK 309
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + +++N F P G + ++ + GK++ F FV +SPEEA A+ + +
Sbjct: 337 LFIKNLDDTIDSEKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMN 396
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ V G+ + V A++ R Q AR
Sbjct: 397 QRMVEGKPLYVALAQRKDVRRSQLEQQIQAR 427
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 167 SAPARE----TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
SAPA+E T LYV L+ V L E FS S +V ++ +S GY +V+
Sbjct: 39 SAPAKENLGETSASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVN 98
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
F ++ E AI L+ + GRP R+ + Q++
Sbjct: 99 FVKFDDGEQAIEDLNYSLIEGRPCRIMWSQRD 130
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 61 QDTTVETK-PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKN 118
++TT ET P + LYV L S + A + +F+P G V + + + K+
Sbjct: 32 KETTTETSAPAKENLGETSASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKS 91
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLY 178
+A+V ++ + A+ + + GR R+ ++ QR S R + ++
Sbjct: 92 LGYAYVNFVKFDDGEQAIEDLNYSLIEGRPCRIMWS--------QRDPSL-RRNGEGNIF 142
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL + + L + FSA F + S V G S +GFV + T E AEAAI +++G
Sbjct: 143 IKNLHPAIDNKALHDTFSA-FGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVNG 201
Query: 239 KELMGR 244
L R
Sbjct: 202 MLLNDR 207
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 82 YVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFD 140
YV NLP ++ A+++ F P G V ++K NR F FV + A AAV
Sbjct: 255 YVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLS 314
Query: 141 TQEVSG-RIIRVEFAKKFKKPRPQRSASAPARETQHKL-----------YVSNLSWKVRS 188
+ G + +E + R +R + Q KL YV NL ++
Sbjct: 315 GKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVNLYVKNLDDLLQD 374
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LRE F+ N+ ++S V + G S G+GFV F+T EEA A++ ++GK + G+P+ +
Sbjct: 375 EELREAFT-NYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYV 433
Query: 249 KFGQKND 255
F Q+ +
Sbjct: 434 AFAQRKE 440
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + + F+ G ++ ++ G+++ + +V + E A A+N+ +
Sbjct: 166 IFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAINKIN 225
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++G + F F+K R +R P E YV NL + LR F F
Sbjct: 226 GMLIAGTEV---FVGHFQK-RQER----PDIEDWTNCYVKNLPTQWTDADLRREFEP-FG 276
Query: 201 PVSSKVVF-ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
V+S VV + N + G+GFV++ + A AA+ L GK G
Sbjct: 277 QVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKG 320
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL E++ F GT+ +++ G +R F FV ++PEEA AV + +
Sbjct: 363 LYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMN 422
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARET 173
+ ++G+ + V FA++ + R Q A R T
Sbjct: 423 GKLITGKPVYVAFAQRKEVRRAQLEAQHAQRAT 455
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV ++ + A + +F G V + + + ++ +A+V + +A+ A++
Sbjct: 78 LYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAERALDTM 137
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G R+ ++++ P ++S ++V NL + + L + FS
Sbjct: 138 NFTCIKGVPCRIMWSQR--DPSLRKSGVG-------NIFVKNLDPSIDNKALYDTFSLFG 188
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
N +S KV + G+S GYG+V + T E A AI+ ++G + G
Sbjct: 189 NILSCKVANDPT-GQSKGYGYVHYETAEAATEAINKINGMLIAG 231
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 165 SASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVS 222
S S P + Q LYV ++ V L E F+A PV+S +V ++ RS GY +V+
Sbjct: 65 SVSGPVQPFQTASLYVGDIHPDVTEALLFEIFNA-VGPVASIRVCRDAVTRRSLGYAYVN 123
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
F +AE A+ +++ + G P R+ + Q++ + +S
Sbjct: 124 FHNLVDAERALDTMNFTCIKGVPCRIMWSQRDPSLRKSG 162
>gi|225679309|gb|EEH17593.1| nucleic acid-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 960
Score = 80.1 bits (196), Expect = 9e-13, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E KP +T +Y+ NL + + ++K + G ++ V I+ G +R FA+V
Sbjct: 765 EVKPNET--------IYIGNLFFEVTADDLKRDLSKFGNILAVRIVYDSRGMSRGFAYVQ 816
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-FKKPRPQRSASAPARETQHKLYVSNLSW 184
S + A+AA+N+ + GR + V ++ + P P RS E L++ NLS+
Sbjct: 817 FDSIDAAEAAINEMNMTIYEGRRVVVNYSSRGSANPTPTRS-----NEPTRTLFIGNLSF 871
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
++ L E F N +V + G+ G+ F E A+AA L K GR
Sbjct: 872 EMSDRELNELFKDIKNVTDVRVSVDRRTGQPRGFAHADFLDVESAQAAFEILKDKAPYGR 931
Query: 245 PLRLKFGQKNDD 256
PLRL + + D
Sbjct: 932 PLRLDYSFSSRD 943
>gi|350635107|gb|EHA23469.1| hypothetical protein ASPNIDRAFT_173997 [Aspergillus niger ATCC
1015]
Length = 235
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ A +++ F G + V I+ + G++R F +V + +A A
Sbjct: 3 LFVGNLSWNVDEAWLQSEFESFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 62
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS-----ASAPARETQHK-------LYVSNLSWKVR 187
E+ GR+I +++A + Q+ A+A AR + L+V NL +
Sbjct: 63 KGAEIDGRVINLDYATGRPANKDQQGGFKDRANARARSFGDQASPESDTLFVGNLPFDAN 122
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ E F + + ++ + + GR G+G+V +++ +EA AA + L G +L+GRP+R
Sbjct: 123 EDSVGELFGEKGSILGIRLPTDPDSGRPKGFGYVQYSSVDEARAAFNELQGADLLGRPVR 182
Query: 248 LKF 250
L F
Sbjct: 183 LDF 185
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 23/206 (11%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ NI Y+ N +K++F+ G + V+++ GK++
Sbjct: 234 KDREAELRSKASEFTNI----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 289
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-----------FKKPRPQRSASAP 169
F FV+ S E A+ AV + + ++++G++I V A+K F++ + +R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRER----- 344
Query: 170 ARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
R Q KLY+ NL + LR FS+ F + S+V EG+S G+G + F++ E+
Sbjct: 345 IRGCQGVKLYIKNLDDTIDDEKLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPED 402
Query: 229 AEAAISSLDGKELMGRPLRLKFGQKN 254
A A++ ++G+ L +PL + Q++
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALAQRH 428
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 217 GKLLKGCKV---FVGRFKN-RKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYG 272
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 273 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 130 NFDMIKGKSIRLMWS--------QRDAYL-RRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 181 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 28/193 (14%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + E+K +F GT+ +++ GK+R F FV + + A AV
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV---- 271
Query: 141 TQEVSGRII----------------RVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLS 183
QE++G+I +E +KF+K + A + Q+ LY+ NL
Sbjct: 272 -QELNGKIFNDKELYVGRAQKKSEREMELKEKFEK-----NVQEVAEKFQNTNLYLKNLE 325
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ LRE F+ N S KV+ +SN G S G GFV+F + E+A A++ ++GK +
Sbjct: 326 ENIDDEKLRELFAEYGNITSCKVMRDSN-GVSRGSGFVAFKSAEDANRALTEMNGKMVGS 384
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ +D
Sbjct: 385 KPLYVALAQRKED 397
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 19/252 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRR 79
+++ NS SL Y N+ + + L T + KP + + +++
Sbjct: 64 VRVCRDINSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKSGTG 123
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL S + + F G ++ +I G++R + FV E AQ+A+++
Sbjct: 124 NIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKL 183
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + + F F + + + + S+ + + +YV NLS V L+E F +
Sbjct: 184 NGMLINDKKV---FVGPFVRKQDRENVSSNIKFS--NVYVKNLSDTVTDDELKEMF-GKY 237
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
++S VV ++G+S +GFV+F + A A+ L+GK + L + QK +
Sbjct: 238 GTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREM 297
Query: 260 SNKE--EEDVSE 269
KE E++V E
Sbjct: 298 ELKEKFEKNVQE 309
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V+ L + FS VS +V + N +S GY +V++ + +A A+ L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + G+P+R+ + ++
Sbjct: 97 NFTPINGKPIRIMYSNRD 114
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 9/181 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ GK++ F FV+ + E AQ AV + +
Sbjct: 192 VYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMN 251
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G++I +VE + K+ Q+ + KLY+ NL + LR+
Sbjct: 252 GKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRK 311
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS+ F + S+V EG+S G+G + F++ EEA A++ ++G+ L +PL + QK
Sbjct: 312 EFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALSQK 369
Query: 254 N 254
+
Sbjct: 370 H 370
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAI---- 154
Query: 141 TQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G++++ F +FK R R A + ++ +Y+ N + LRE FS
Sbjct: 155 -EEMNGKLLKDCKVFVGRFK-NRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSK 212
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + + G+S G+GFVSF E A+ A+ ++GK++ G+ + + QK
Sbjct: 213 YGKTLSVKVMTDPS-GKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQK 267
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A + +++ NL + + L E FSA
Sbjct: 72 NFDMIKGKSIRLMWS--------QRDACLR-KSGIGNVFIKNLDRSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+SSKV+ S++ S GY FV F + A+ AI ++GK L
Sbjct: 123 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLL 162
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +LS V L + FS +S ++ + RS GY +V+F +A+ A+ ++
Sbjct: 12 LYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + G+ +RL + Q++
Sbjct: 72 NFDMIKGKSIRLMWSQRD 89
>gi|347841454|emb|CCD56026.1| hypothetical protein [Botryotinia fuckeliana]
Length = 794
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 38/252 (15%)
Query: 51 NLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPC-----GTV 105
++ ++ S T KP + + RR L+V +LP + + A + LF+ TV
Sbjct: 12 DVAIEATSEETQTHASKKPRKETNASARRSLFVRSLPATATTASLTELFSDNYPLKHATV 71
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V + K G + FVT A E+AQ A+++F+ Q GR +++E A+ + P +
Sbjct: 72 VLDPVTKQSKG----YGFVTFADAEDAQRALDEFNGQSFQGRKMKIEIAQPRSRDAPAKG 127
Query: 166 -----------------ASAPARETQH---------KLYVSNLSWKVRS-THLREFFSAN 198
A+A + Q KL + NL W V++ L + F
Sbjct: 128 GDDGLKMPKEKNAIATEAAAVKKARQEKLAESKAPPKLIIRNLPWSVKTPDELAKLF-MG 186
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
F V +G+ AG+GF+ K+ AE A+++++G+E+ GR L + + + D
Sbjct: 187 FGKVKF-ATMPKVKGKEAGFGFIVMRGKKNAEKALAAINGREIDGRQLAVDWAVEKDVWE 245
Query: 259 ESNKEEEDVSED 270
+ E+ +SED
Sbjct: 246 KKKNEDAGISED 257
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 28/193 (14%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + E+K +F GT+ +++ GK+R F FV + + A AV
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV---- 271
Query: 141 TQEVSGRII----------------RVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLS 183
QE++G+I +E +KF+K + A + Q+ LY+ NL
Sbjct: 272 -QELNGKIFNDKELYVGRAQKKSEREMELKEKFEK-----NVQEVAEKFQNTNLYLKNLE 325
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ LRE F+ N S KV+ +SN G S G GFV+F + E+A A++ ++GK +
Sbjct: 326 ENIDDEKLRELFAEYGNITSCKVMRDSN-GVSRGSGFVAFKSAEDANRALTEMNGKMVGS 384
Query: 244 RPLRLKFGQKNDD 256
+PL + Q+ +D
Sbjct: 385 KPLYVALAQRKED 397
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 19/252 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRR 79
+++ NS SL Y N+ + + L T + KP + + +++
Sbjct: 64 VRVCRDINSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKSGTG 123
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL S + + F G ++ +I G++R + FV E AQ+A+++
Sbjct: 124 NIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKL 183
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + + F F + + + + S+ + + +YV NLS V L+E F +
Sbjct: 184 NGMLINDKKV---FVGPFVRKQDRENVSSNIKFS--NVYVKNLSDTVTDDELKEMF-GKY 237
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
++S VV ++G+S +GFV+F + A A+ L+GK + L + QK +
Sbjct: 238 GTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREM 297
Query: 260 SNKE--EEDVSE 269
KE E++V E
Sbjct: 298 ELKEKFEKNVQE 309
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V+ L + FS VS +V + N +S GY +V++ + +A A+ L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + G+P+R+ + ++
Sbjct: 97 NFTPINGKPIRIMYSNRD 114
>gi|154297435|ref|XP_001549144.1| hypothetical protein BC1G_12314 [Botryotinia fuckeliana B05.10]
Length = 794
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 38/252 (15%)
Query: 51 NLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPC-----GTV 105
++ ++ S T KP + + RR L+V +LP + + A + LF+ TV
Sbjct: 12 DVAIEATSEETQTHASKKPRKETNASARRSLFVRSLPATATTASLTELFSDNYPLKHATV 71
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
V + K G + FVT A E+AQ A+++F+ Q GR +++E A+ + P +
Sbjct: 72 VLDPVTKQSKG----YGFVTFADAEDAQRALDEFNGQSFQGRKMKIEIAQPRSRDAPAKG 127
Query: 166 -----------------ASAPARETQH---------KLYVSNLSWKVRS-THLREFFSAN 198
A+A + Q KL + NL W V++ L + F
Sbjct: 128 GDDGLKMPKEKNAIATEAAAVKKARQEKLAESKAPPKLIIRNLPWSVKTPDELAKLF-MG 186
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
F V +G+ AG+GF+ K+ AE A+++++G+E+ GR L + + + D
Sbjct: 187 FGKVKF-ATMPKVKGKEAGFGFIVMRGKKNAEKALAAINGREIDGRQLAVDWAVEKDVWE 245
Query: 259 ESNKEEEDVSED 270
+ E+ +SED
Sbjct: 246 KKKNEDAGISED 257
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 23/206 (11%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
QD E + + ++ N+ Y+ N +K++F+ G + V+++ GK++
Sbjct: 453 QDREAELRSKASEFTNV----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 508
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-----------FKKPRPQRSASAP 169
F FV+ S E A+ AV + + ++++G++I V A+K F++ + +R
Sbjct: 509 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNER----- 563
Query: 170 ARETQ-HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
R Q KLYV NL + LR+ FS+ F + S+V EG+S G+G + F++ E+
Sbjct: 564 IRGCQVVKLYVKNLDDTIDDEKLRKEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPED 621
Query: 229 AEAAISSLDGKELMGRPLRLKFGQKN 254
A A++ ++G+ L +PL + Q++
Sbjct: 622 ALKAMTEMNGRILGSKPLSIALAQRH 647
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 435
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 436 GKLLQGCKV---FVGRFKS-RQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 491
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 492 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQK 544
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 289 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDTM 348
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ R R +++ NL + + L E FSA
Sbjct: 349 NFDVIQGKSIRLMWSQRDAYLR---------RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 399
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 400 RILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQG 441
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 162 PQRSASAPARETQHK----------------LYVSNLSWKVRSTHLREFFSANFNPVSSK 205
P SA ARE H LYV +L V L FSA +S +
Sbjct: 258 PHGECSASAREQAHSGQDEEMDVEAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIR 317
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ + RS GY +V+F +A+ A+ +++ + G+ +RL + Q++
Sbjct: 318 ICRDQLTRRSLGYAYVNFLHLADAQKALDTMNFDVIQGKSIRLMWSQRD 366
>gi|302847685|ref|XP_002955376.1| hypothetical protein VOLCADRAFT_109965 [Volvox carteri f.
nagariensis]
gi|300259218|gb|EFJ43447.1| hypothetical protein VOLCADRAFT_109965 [Volvox carteri f.
nagariensis]
Length = 219
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 36/210 (17%)
Query: 72 TQKQNIR--RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
T ++ IR ++ +V NL W S ++K+ F G VV +++ G+++ + V +P
Sbjct: 3 TTQETIRLGKRCFVGNLAWKTSWQDLKDKFREAGNVVYTNVMRDDDGRSKGWGIVEFETP 62
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKK-------------PRPQRSAS--------- 167
EEA A+ + E+ GR I V ++ + PRP R
Sbjct: 63 EEALHAIQSLNGAELGGRRILVREDREDRDIKQLIGSTEVQRAPRPARGGGRSSANGGRG 122
Query: 168 -----------APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA 216
+ ++ V + W L++ F A V V S++GRS
Sbjct: 123 AGRGRVGAAAEGAGESSGLQIVVQGIPWSYTWRELKDMF-AEIGNVERADVVTSSDGRSR 181
Query: 217 GYGFVSFATKEEAEAAISSLDGKELMGRPL 246
GYG V F TK+ AEAA++ EL GR L
Sbjct: 182 GYGTVKFTTKDAAEAAVTRFHESELEGRRL 211
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+ +V NL+WK L++ F N V + V+ ++GRS G+G V F T EEA AI S
Sbjct: 13 RCFVGNLAWKTSWQDLKDKFREAGNVVYTNVM-RDDDGRSKGWGIVEFETPEEALHAIQS 71
Query: 236 LDGKELMGRPLRLKFGQKNDDVSE 259
L+G EL GR + ++ +++ D+ +
Sbjct: 72 LNGAELGGRRILVREDREDRDIKQ 95
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++ V +PWS++ E+K++FA G V +++ G++R + V + + A+AAV +F
Sbjct: 142 QIVVQGIPWSYTWRELKDMFAEIGNVERADVVTSSDGRSRGYGTVKFTTKDAAEAAVTRF 201
Query: 140 DTQEVSGRIIRVEFAKKFK 158
E+ GR + V F +++
Sbjct: 202 HESELEGRRLAV-FIDRYQ 219
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K++F+ G + V+++ GK++ F FV+ S E A+ AV + +
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 141 TQEVSGRIIRVEFAKK-----------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G++I V A+K F++ + +R KLY+ NL +
Sbjct: 310 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG----VKLYIKNLDDTIDDE 365
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS+ F + S+V EG+S G+G + F++ E+A A++ ++G+ L +PL +
Sbjct: 366 KLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 423
Query: 250 FGQKN 254
Q++
Sbjct: 424 LAQRH 428
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 217 GKLLKGCKV---FVGRFKN-RKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 272
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 273 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 130 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 181 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL S S +++ F GT+ V +++ GK++ F FV +PE+A AV+ +
Sbjct: 221 IYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALN 280
Query: 141 TQEVSGRIIRVEFAKKFK------KPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLRE 193
++ + V A+K K R +++ + Q LYV NL + L+E
Sbjct: 281 GKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKE 340
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS + ++S V G S G GFV+F+T EEA A+ ++GK ++ +PL + Q+
Sbjct: 341 LFS-EYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQR 399
Query: 254 NDD 256
++
Sbjct: 400 KEE 402
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 97/184 (52%), Gaps = 12/184 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S + +++ +LF G VV V + + G++ + +V ++ ++A A++
Sbjct: 42 LYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVL 101
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + IRV +++ P ++S + +++ NL + L E FS+
Sbjct: 102 NFTPLNNKTIRVSVSRR--DPTDRKSGAG-------NIFIKNLDKSIDIKALHETFSSFG 152
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK-FGQKNDDVS 258
+S K+ +++ G+S GYGFV + ++E A+ AI L+G + + + + F +K D S
Sbjct: 153 TIISCKIATDAS-GQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDS 211
Query: 259 ESNK 262
E +K
Sbjct: 212 EMSK 215
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQT K+ + + LYV NL + ++K LF+ GT+ ++++ G +R FV
Sbjct: 309 EQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVA 368
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSA 166
++PEEA A+ + + + + + + V A++ ++ R + A
Sbjct: 369 FSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQA 409
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
T LYV +L V + L + F+ VS +V + + GRS GYG+V+++ +++A A
Sbjct: 38 TTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRA 97
Query: 233 ISSLDGKELMGRPLRLKFGQKN 254
I L+ L + +R+ +++
Sbjct: 98 IDVLNFTPLNNKTIRVSVSRRD 119
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 6/182 (3%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ ++V L W+ + FA CG VV + + GK+R F +VT A+ E AA+
Sbjct: 44 KTIFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFATVEAVDAAIA 103
Query: 138 QFDTQEVSGRIIRVEFA-KKFKKPRPQRSASA---PARETQHKLYVSNLSWKVRSTHLRE 193
Q + +E+ GR + ++ + +K K Q+ A A A E L+V NLSW L E
Sbjct: 104 Q-NGKEIDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSVLFVGNLSWDATEDTLWE 162
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ + S +V + G+ G+ +V F+ E ++ A G E+ GR +R+ F Q
Sbjct: 163 TFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASKKAFEGAAGAEVAGRNIRVDFSQP 222
Query: 254 ND 255
D
Sbjct: 223 RD 224
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 167 SAPARETQHK---LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+APA E ++V LSW V + L + F+ VS++V + N G+S G+G+V+F
Sbjct: 33 AAPAEEASDATKTIFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTF 92
Query: 224 ATKEEAEAAISSLDGKELMGRPLRL 248
AT E +AAI+ +GKE+ GR + +
Sbjct: 93 ATVEAVDAAIAQ-NGKEIDGRAVNI 116
>gi|396472554|ref|XP_003839148.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
gi|312215717|emb|CBX95669.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
Length = 379
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 8/193 (4%)
Query: 62 DTTVETKPEQ-TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+TT+ T+P + T R LY+ NL + + +++ +F+ G + +V+II G +R
Sbjct: 174 ETTLRTRPRRDTSDAPPGRTLYIGNLYYEVTADQLQRVFSRFGEIENVKIIYDNRGLSRG 233
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK---FKKPRPQRSASAPARETQHKL 177
F +V + +AQ A++ D Q GR + V+F ++ F K S ++P++ L
Sbjct: 234 FGYVEFKNIPDAQTAIDNLDMQVFEGRNLVVQFHREKPGFGKNNRANSTNSPSK----TL 289
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
++ N+S+++ L + F N V +V + G+ G+ F A A + L
Sbjct: 290 FIGNMSFEMSDKDLNDLFREVRNVVDVRVAIDRRTGQPRGFAHADFLDIASATHAKNILA 349
Query: 238 GKELMGRPLRLKF 250
K + GR LR+ F
Sbjct: 350 NKVVYGRELRIDF 362
>gi|302904116|ref|XP_003049006.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729940|gb|EEU43293.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 474
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K + N+ FV P A+ A+
Sbjct: 83 KRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQ 142
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S + H ++V +LS +V L + FS
Sbjct: 143 TLNGRRVHQSEIRVNWAY-------QSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 195
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 196 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 249
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 36/207 (17%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G+V + ++ K G++R + FV +A+ A++ D + + R IR +A +
Sbjct: 194 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQK 253
Query: 158 KKPR----------------PQRSASAPARET-------------QHKLYVSNLSWKVRS 188
+P P PA Q YV NL+
Sbjct: 254 GQPSMAQQQAMQAMGMTPTTPYGHHQFPAHGVASYEVILTQTPSWQTTCYVGNLTPYTTP 313
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ F NF V ES G+ F+ T E A AI ++G + GRPL+
Sbjct: 314 NDVVPLFQ-NFG-----FVVESRFQADRGFAFIKMDTHENAAMAICQMNGYNVNGRPLKC 367
Query: 249 KFGQKNDDVSESNKEEEDVSEDQSAES 275
+G+ ++ + QSA++
Sbjct: 368 SWGKDKTPNAQGGFDPAQPYSPQSAQA 394
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 146 GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK 205
G I+ A F++ P+ + A LYV L +V LR+ F + + K
Sbjct: 63 GGIMSPTSAGGFRRAAPEPNKRA--------LYVGGLDQRVTEDVLRQIFETTGHVQNVK 114
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
++ + N R YGFV + AE A+ +L+G+ + +R+ + +++ SNKE+
Sbjct: 115 IIPDKNA-RGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSN---TSNKED 169
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 12/185 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV + + +K +F GT+ ++ K GK R F FV +PE A+ AV + +
Sbjct: 9 VYVKDFGDELNDETLKEMFEKYGTITSHRVMI-KDGKGRGFGFVAFENPESAEHAVQELN 67
Query: 141 TQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+E+ G+I+ V A+K K+ Q R LYV NL + LR
Sbjct: 68 GKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLR 127
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK-EEAEAAISSLDGKELMGRPLRLKFG 251
+ FS S+KV+ E EGRS G+GFV F+ EEA A++ ++G+ + +PL +
Sbjct: 128 KEFSPFGTITSAKVMLE--EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVALA 185
Query: 252 QKNDD 256
Q+ +D
Sbjct: 186 QRTED 190
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL S + +K F G + +V+II+ + N+AFV +A A+
Sbjct: 58 RVLYVGNLDKSITEDLLKQYFQAGGPIQNVKIIEDMKNEYVNYAFVEYIRSHDANVALQT 117
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ + +++ +A + ++ A + L+V +L+ V L F
Sbjct: 118 LNGVQLENKTLKINWAFETQQ--------AAENDDTFNLFVGDLNVDVDDETLAGTFREF 169
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ + V+++ GRS GYGFVSF+ +EEA+ A+ ++ GK+L GR +R+ + K
Sbjct: 170 PTFIQAHVMWDMQTGRSRGYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRINWATK 224
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 165 SASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
SA+ RET + LYV NL + L+++F A P+ + + E + Y FV +
Sbjct: 47 SATKGGRETSDRVLYVGNLDKSITEDLLKQYFQAG-GPIQNVKIIEDMKNEYVNYAFVEY 105
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
+A A+ +L+G +L + L++ +
Sbjct: 106 IRSHDANVALQTLNGVQLENKTLKINW 132
>gi|171690010|ref|XP_001909937.1| hypothetical protein [Podospora anserina S mat+]
gi|170944960|emb|CAP71071.1| unnamed protein product [Podospora anserina S mat+]
Length = 565
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 6/193 (3%)
Query: 63 TTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNF 121
T ++ P T+ + RR ++V L E+K F G V + +I+K + +++
Sbjct: 163 TPRDSPPPLTEDERDRRTVFVQQLAARLRTKELKEFFEKVGPVAEAQIVKDRVSNRSKGV 222
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPR-PQRSASAPARETQHKLY 178
+V + + QAA+ Q Q++ G I+++ A+K ++ R P + + P H+LY
Sbjct: 223 GYVEFKNEDSVQAAL-QLTGQKLLGIPVIVQLTEAEKNRQVRNPDATGNHPNSIPFHRLY 281
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V N+ + + L+ F F + + + + GRS GYGFV F +A A+ ++G
Sbjct: 282 VGNIHFSITEQDLQNVFEP-FGELEFVQLQKDDTGRSRGYGFVQFRDATQAREALEKMNG 340
Query: 239 KELMGRPLRLKFG 251
+L GRP+R+ G
Sbjct: 341 FDLAGRPIRVGLG 353
>gi|302422442|ref|XP_003009051.1| RNP domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261352197|gb|EEY14625.1| RNP domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 300
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 117/213 (54%), Gaps = 30/213 (14%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVD-VEIIKH-KGGKNRNFAFVTMASPEEAQAAV 136
R+LY+ NL ++ + E+K F G +V+ V I K+ + + +AFV +++P EA+ A+
Sbjct: 49 RRLYIGNLAYATTEGELKEFFK--GYLVESVSIPKNPRTDRPVGYAFVDLSTPTEAERAI 106
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASA------PARE---TQHKLYVSNLSWKVR 187
++ +E+ R + V+ A+K +P +++ +A P+R ++ K+ V+NL + +
Sbjct: 107 SELSGKEILERKVSVQLARK-PEPAGEKADAANAPGAWPSRRRVASKTKVMVANLPYDLT 165
Query: 188 STHLREFFSANFNPVSSKVVFE------------SNEGRSA-GYGFVSFATKEEAEAAIS 234
L+E F A ++P S+K+ E R A G+GFV+ A++E + A+S
Sbjct: 166 EEKLKELFEA-YSPSSAKIALRPIPRFMIKKLQARGEPRKARGFGFVTLASEELQQKAVS 224
Query: 235 SLDGKELMGRPLRLKFGQKNDDVS--ESNKEEE 265
++GKE+ GR + +K + D + E+N EE
Sbjct: 225 EMNGKEIEGREIAVKVAIDSPDKTDEEANSPEE 257
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S E++ +F GT+ V ++K + GK+R F FV + E+A AV +
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 141 TQEVSGRIIRVEFAKKFK------KPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLRE 193
++ + V A+K K R ++SA ++Q LY+ NL + L+E
Sbjct: 268 GYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKE 327
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS + ++S V G S G GFV+F+T EEA A+S ++GK ++ +PL + Q+
Sbjct: 328 LFSP-YGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQR 386
Query: 254 NDD 256
++
Sbjct: 387 KEE 389
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ +LF G VV V + + ++ + +V +P++A A+
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ + P +RS + +++ NL + L + FSA
Sbjct: 89 NFTPLHGKPIRIMYSN--RDPTIRRSGNG-------NIFIKNLDKAIDHKALHDTFSAFG 139
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KV +S+ G+S GYGFV + + E A+ AI L+G L
Sbjct: 140 NILSCKVAVDSS-GQSKGYGFVQYDSDEAAQKAIEKLNGMLL 180
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 17/222 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQTQKQN----IRR---- 79
+++ S SL Y N+ + L T + KP + N IRR
Sbjct: 56 VRVCRDLTSQRSLGYGYVNYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNG 115
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + + + F+ G ++ ++ G+++ + FV S E AQ A+ +
Sbjct: 116 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + + + F + + + A R T ++V NLS LR+ F F
Sbjct: 176 NGMLLNDKQV---YVGPFVRKQERDMAVDKTRFT--NVFVKNLSESTLEEELRKIF-GEF 229
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S V + +G+S +GFV+F E+A A+ +L+G +L
Sbjct: 230 GTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKL 271
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + F+ VS +V + RS GYG+V++ ++A A+ L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ + ++ + S
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSG 113
>gi|303314025|ref|XP_003067021.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106689|gb|EER24876.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320039295|gb|EFW21229.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides posadasii str. Silveira]
Length = 483
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 8/187 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V V+II K K N+ FV P A+ A+
Sbjct: 91 KRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMQ 150
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + V IRV +A + +A+ ++V +LS +V L + FSA
Sbjct: 151 TLNGRRVHQSEIRVNWAYQ------SNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA 204
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 205 -FGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKGQ 263
Query: 257 VSESNKE 263
S S ++
Sbjct: 264 PSISQQQ 270
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A + + R+A P + LYV L +V LR+ F +
Sbjct: 65 TSPMSGNMMSPTSAGGYVR----RAAPEPNKRA---LYVGGLDPRVTEDILRQIFETTGH 117
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
S K++ + N + YGFV + AE A+ +L+G+ + +R+ + ++++ +
Sbjct: 118 VQSVKIIPDKNS-KGLNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNN---A 173
Query: 261 NKEE 264
NKE+
Sbjct: 174 NKED 177
>gi|367054118|ref|XP_003657437.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
gi|347004703|gb|AEO71101.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
Length = 573
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 5/187 (2%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTM 126
+P T + RR ++V L E+K F G V + +I+K + +++ +V
Sbjct: 178 EPSPTGDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEF 237
Query: 127 ASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSW 184
+ EE+ AA Q Q++ G I++ A+K ++ R S+ P H+LYV N+ +
Sbjct: 238 KN-EESVAAALQLTGQKLLGIPVIVQPTEAEKNRQVRNTESSGHPNSVPFHRLYVGNIHF 296
Query: 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ T L+ F F + + + + GRS GYGFV F +A A+ ++G +L GR
Sbjct: 297 SITETDLQNVFEP-FGELEFVQLQKDDSGRSRGYGFVQFRDAGQAREALEKMNGFDLAGR 355
Query: 245 PLRLKFG 251
P+R+ G
Sbjct: 356 PIRVGLG 362
>gi|327281621|ref|XP_003225545.1| PREDICTED: nucleolin-like [Anolis carolinensis]
Length = 696
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+S S +++ F V+V ++ + G ++ A++ S
Sbjct: 364 QENKKERDARTLFVKNLPFSVSKEDLQEEF---DNAVEVRLV-SRDGNSKGMAYIEFKSE 419
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EA+ + + E+SGR I +++ + K + R + L V+NLS+
Sbjct: 420 AEAEKTLEEKQGLEMSGRAIVIDYTGE-KSQQDTRKGGKGGQSDSKTLVVNNLSYDATEE 478
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E F S+ + ++N+GR G+ FV FAT E+A+ A++S + E+ GR +RL+
Sbjct: 479 SLQEVFEK----ASAIRIPQNNQGRPKGFAFVDFATAEDAKEAMNSCNNTEIEGRAIRLE 534
Query: 250 F 250
F
Sbjct: 535 F 535
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 31/274 (11%)
Query: 5 EAAATSIFLTNHPFSFSC--LFPKLPHCI--KLLHSSNSTPSLSY-NFPT---------- 49
E A ++F+ N PFS S L + + + +L+ ++ ++Y F +
Sbjct: 369 ERDARTLFVKNLPFSVSKEDLQEEFDNAVEVRLVSRDGNSKGMAYIEFKSEAEAEKTLEE 428
Query: 50 -RNLCLQVCSTLQDTTVETKPEQTQK-----QNIRRKLYVFNLPWSFSVAEIKNLFAPCG 103
+ L + + + D T E + T+K Q+ + L V NL + + ++ +F
Sbjct: 429 KQGLEMSGRAIVIDYTGEKSQQDTRKGGKGGQSDSKTLVVNNLSYDATEESLQEVFEKAS 488
Query: 104 TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ 163
+ I ++ G+ + FAFV A+ E+A+ A+N + E+ GR IR+EF+ + + R Q
Sbjct: 489 AI---RIPQNNQGRPKGFAFVDFATAEDAKEAMNSCNNTEIEGRAIRLEFSTQGGQNRNQ 545
Query: 164 -RSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
R + +T L+V LS LRE F + V +++V + G S G+GFV
Sbjct: 546 GRGGFSQQSKT---LFVKGLSEDTTEETLRESFDGS---VGARIVTDRETGSSKGFGFVD 599
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F++ E+A+AA +++ E+ G + L F + D
Sbjct: 600 FSSAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 633
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + E+K T D+E+ + G ++ F +V S E A+ + +
Sbjct: 285 VFLGNLNANKDFEELKAGIRDFFTKKDIEVQDVRLGGSKKFGYVDFPSEAEMDKAL-KLN 343
Query: 141 TQEVSGRIIRVEFAK------KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+++ G +++E AK + KK R R+ L+V NL + V L+E
Sbjct: 344 GKKLMGLELKLEKAKSRESIQENKKERDART-----------LFVKNLPFSVSKEDLQEE 392
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F N V ++V S +G S G ++ F ++ EAE + G E+ GR + + +
Sbjct: 393 FD---NAVEVRLV--SRDGNSKGMAYIEFKSEAEAEKTLEEKQGLEMSGRAIVIDY 443
>gi|406866575|gb|EKD19615.1| RNA splicing factor [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 587
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
ET P T+ + RR ++V L E+ F G V + +I+K + G+++ +V
Sbjct: 179 ETTPPLTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYV 238
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEF--AKKFKKPR-PQRSASAPARETQHKLYVSN 181
+ E AA+ Q Q++ G I + A+K ++ R P+ ++S P + H+LYV N
Sbjct: 239 EFKNEESVPAAI-QLTGQKLLGIPIIAQLTEAEKNRQVRNPEATSSNPNQIPFHRLYVGN 297
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ + + + L+ F F + + + +GRS GYGFV F +A A+ ++G +L
Sbjct: 298 IHFSITESDLQNVFEP-FGELEFVQLQKEEQGRSRGYGFVQFRDPSQAREALEKMNGFDL 356
Query: 242 MGRPLRLKFG 251
GRP+R+ G
Sbjct: 357 AGRPIRVGLG 366
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N + + +F G++ ++ K GK+R F FV
Sbjct: 179 EREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVM-MKDGKSRGFGFVA 237
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKK-------FKKPRPQRSASAPARETQHKL 177
+P+ A+ AV + + +E+S G+++ V A+K K+ Q R L
Sbjct: 238 FENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNL 297
Query: 178 YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237
YV NL + LR+ F+ S+KV+ + EGRS G+GFV F+ +EA A++ ++
Sbjct: 298 YVKNLDDTIDDERLRKEFAPYGTITSAKVMLD--EGRSKGFGFVCFSAPDEATKAVTEMN 355
Query: 238 GKELMGRPLRLKFGQKNDD 256
G+ + +PL + Q+ ++
Sbjct: 356 GRIVGSKPLYVALAQRKEE 374
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR IR+ ++++ P ++S +++ NL K+ + + + FSA
Sbjct: 73 NFDTIKGRPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKKIDNKAMYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KV + +G+S GYGFV F T+E A +I ++G L
Sbjct: 124 NILSCKVA-QDEKGQSKGYGFVHFETEESANTSIEKVNGMLL 164
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L E FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDTIKGRPIRIMWSQRDPSLRKSG 97
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ + E + LF P G V + + + G++R F FV + EEAQ AV+
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLH 294
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ---RSASAPARETQHK-----LYVSNLSWKVRSTHLR 192
+ GR + V A+K K R + RS E K LY+ NL V LR
Sbjct: 295 DSDFKGRKLFVSRAQK-KSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLR 353
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ F F ++S V + G S G+GFV F++ +EA A++ ++ K + +PL + Q
Sbjct: 354 DAFEP-FGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSLAQ 412
Query: 253 KND 255
+ +
Sbjct: 413 RRE 415
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + FA G V+ ++ + G+++ + FV + E A++A+ +
Sbjct: 142 IFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVN 201
Query: 141 TQEVSGRIIRV--EFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
++ + + V +KK R A ++ Q +YV N+ + RE F+
Sbjct: 202 GMLLNDKKVYVGHHVSKK------DRQAKLDEQKKQFTNVYVKNIDPEANDDEFRELFTP 255
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257
F V+S V+ EGRS G+GFV+F T EEA+ A+ +L + GR L + QK
Sbjct: 256 -FGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQK---- 310
Query: 258 SESNKEEE 265
+S +EEE
Sbjct: 311 -KSEREEE 317
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L + S A + +F G V + + + ++ +A+V + + + A+ Q
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++++ R + Q +++ NL + + L + F+A
Sbjct: 114 NYSLIKGRACRIMWSQRDPALR---------KTGQGNIFIKNLDDAIDNKALHDTFAAFG 164
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KV + GRS GYGFV + T E AE+AI +++G L
Sbjct: 165 NVLSCKVATDE-MGRSKGYGFVHYETNEAAESAIKAVNGMLL 205
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL ++++ F P G + ++++ +GG ++ F FV +SP+EA AV + +
Sbjct: 338 LYIKNLEDDVDDEKLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMN 397
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+ + + + V A++ ++ R Q+ S A+ Q ++
Sbjct: 398 NKMMGSKPLYVSLAQR-REVRRQQLESQIAQRNQIRM 433
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L V L E F+ PV+S +V ++ RS GY +V++ + E A+
Sbjct: 54 LYVGELDPTVSEAMLFEIFNM-IGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQ 112
Query: 236 LDGKELMGRPLRLKFGQKN 254
L+ + GR R+ + Q++
Sbjct: 113 LNYSLIKGRACRIMWSQRD 131
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++K +F GT+ V +++ G+++ F FV SP+EA AV +
Sbjct: 306 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 365
Query: 141 TQEVS------GRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++ S GR + +E +KF+K A + LY+ NL V
Sbjct: 366 GKKFSDKEWYVGRAQKKSEREMELKEKFEK----NLQEAADKYQNTNLYLKNLDDTVDDE 421
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F A F ++S V + G S G GFV+F + ++A A++ ++ K + +PL +
Sbjct: 422 KLRELF-AEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVA 480
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 481 LAQRKED 487
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S A++ ++FA G VV V + + K+ +A+V +P +A A+
Sbjct: 127 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 186
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++GR IR+ ++ + P ++S +A +++ NL + + L + F
Sbjct: 187 NFTPINGRPIRIMYSN--RDPSLRKSGTA-------NIFIKNLDKSIDNKALHDTFCVFG 237
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV + G S GYGFV + E A AAI L+G
Sbjct: 238 NILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNG 275
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQTQKQN----IRR---- 79
+++ S SL Y N+ T + L T + +P + N +R+
Sbjct: 154 VRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTA 213
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL S + + F G ++ ++ G+++ + FV E A AA+ +
Sbjct: 214 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL 273
Query: 140 DTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ + + V F +K Q ++P + +YV NL+ L+E F
Sbjct: 274 NGMLMNDKKVYVGPFVRK------QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF-GK 326
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
F ++S VV +GRS +GFV+F + +EA A+ L+GK+
Sbjct: 327 FGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKF 369
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V+ L + F+ VS +V + +S GY +V++ T +A A+ L
Sbjct: 127 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 186
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + ++ + +S
Sbjct: 187 NFTPINGRPIRIMYSNRDPSLRKSG 211
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASP 129
QT ++ + L V LP S + EI++LF+ G V ++I+ K G++ + FV P
Sbjct: 19 QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRP 78
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E+A+ A+N + + + I+V +A RP A A LYVS L +
Sbjct: 79 EDAEKAINTLNGLRLQNKTIKVSYA------RPSSEAIKGA-----NLYVSGLPKNMAQQ 127
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLR 247
L FS ++S+++ ++ G S G GF+ F + EAE AI L+G G P+
Sbjct: 128 DLENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIPKGSSEPIT 187
Query: 248 LKF 250
+KF
Sbjct: 188 VKF 190
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + LF P G V V++I+ + K + F FVTM + EEA A+
Sbjct: 254 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSL 313
Query: 140 DTQEVSGRIIRVE 152
+ + R+++ E
Sbjct: 314 NGYTLGNRVLQDE 326
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV-- 136
+ +YV NL S + E+K +F G + +++ GK++ F F+ + E+A AV
Sbjct: 217 QNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVES 276
Query: 137 ---NQFDTQE--VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHL 191
+FD +E V + E ++ K Q + A + LYV NL + L
Sbjct: 277 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKL 336
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
+E FS F ++S V G S G GFV+F+T EEA A+S ++GK ++ +PL +
Sbjct: 337 KELFS-EFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALA 395
Query: 252 QKNDD 256
Q+ ++
Sbjct: 396 QRKEE 400
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ +LF G VV V + + + + + +V ++P +A A+
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEML 99
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V+G+ IRV ++ + P ++S SA +++ NL + + L + FS+
Sbjct: 100 NFTPVNGKSIRVMYSH--RDPTLRKSGSA-------NIFIKNLDKSIDNKALHDTFSSFG 150
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S K+ +SN G+S GYGFV + +E A+ AI L+G
Sbjct: 151 NILSCKIATDSN-GQSKGYGFVQYDNEESAQGAIDKLNG 188
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +I G+++ + FV + E AQ A+++ +
Sbjct: 128 IFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLN 187
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q S +YV NLS L++ F F
Sbjct: 188 GMLMNDKQVYVGHFLRK------QERESTTGMTKFQNVYVKNLSESTTDDELKKVF-GEF 240
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240
++S VV +G+S +GF++F T E+A A+ SL+GK+
Sbjct: 241 GNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKK 281
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P T LYV +L + V + L + F+ VS +V + + RS GYG+V+++ +
Sbjct: 32 PGGLTSTSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPND 91
Query: 229 AEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
A A+ L+ + G+ +R+ + ++ + +S
Sbjct: 92 ASRAMEMLNFTPVNGKSIRVMYSHRDPTLRKSG 124
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 65 VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+++K EQT K+ + + LYV NL + ++K LF+ GT+ ++++ G +R
Sbjct: 302 LKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRG 361
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
FV ++ EEA A+++ + + + + + V A++
Sbjct: 362 SGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQR 397
>gi|51968436|dbj|BAD42910.1| putative protein [Arabidopsis thaliana]
Length = 171
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 10 SIFLTNHPFSFSCLFPKLPHCIKLLHSS--NSTPSLSYNFPTRNLCLQVCSTLQDTTVET 67
++ TNH S S P L C H++ +S P+ S RNL +T Q+ +E+
Sbjct: 26 NVAFTNHSLSLST--PSL--CRLHRHATFPDSIPAKS-----RNLTSYFSTTTQEPVLES 76
Query: 68 K------PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
PE +++ + +L N+PW+ + +I++LF G+V+D+E+ HK +NR
Sbjct: 77 SSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGL 136
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
F+ MASPEEA A+ ++ E GR ++V++AK
Sbjct: 137 VFIEMASPEEAATALKSLESCEYEGRRLKVDYAK 170
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NLP S+ + F G VV ++I G ++ F++ ++A+AAV
Sbjct: 184 LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRS 188
+E+ G+ + A+K + +RS+ A+ + K LYV NL +
Sbjct: 244 HEKEIEGKKLYCGRAQK----KAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDD 299
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LRE F N S+KV+ + N GRS G+GFV F++ EEA A++ ++G+ G+PL +
Sbjct: 300 EGLREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Query: 249 KFGQKNDD 256
Q+ +D
Sbjct: 359 GLAQRKED 366
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 92/181 (50%), Gaps = 13/181 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + + F G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P +RS Q +++ NL + + L + FS+
Sbjct: 64 NFDVIKGKPIRIMWSQR--DPSLRRSG-------QGNVFIKNLDRSIDNKALYDTFSSFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N S G+GFV + + E A+ AI ++G + + + + +F +ND +
Sbjct: 115 NILSCKVVCDING--SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 259 E 259
E
Sbjct: 173 E 173
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 12/177 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G ++ F FV S E AQ A+
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAI---- 146
Query: 141 TQEVSGRIIRVE--FAKKFKKPRPQRSASAPARETQHKLYVSNL--SWKVRSTHLREFFS 196
++V+G ++ + F +FK + A + L+V NL SW + L + F
Sbjct: 147 -EKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDA--LLKNFE 203
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
VS KV+ + G S +GF+SF ++AEAA+ + KE+ G+ L QK
Sbjct: 204 QFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQK 260
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L + F A+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + G+P+R+ + Q++ + S +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQ 89
>gi|225682885|gb|EEH21169.1| nucleolysin TIA-1 [Paracoccidioides brasiliensis Pb03]
Length = 471
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V V+II K K N+ FV P A+ A+
Sbjct: 99 KRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMA 158
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q +++ + H ++V +LS +V L + FS
Sbjct: 159 TLNGRRVHQSEIRVNWAY-------QSNSNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 211
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 212 A-FGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRCNWANQKG 270
Query: 256 DVSESNKE 263
S S ++
Sbjct: 271 QPSISQQQ 278
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A F + R+A P + LYV L +V LR+ F +
Sbjct: 73 TSPMSGNMMSPTSAGGFVR----RAAPEPNKRA---LYVGGLDPRVTEDILRQIFETTGH 125
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
S K++ + N + YGFV + AE A+++L+G+ + +R+ + + S S
Sbjct: 126 VQSVKIIPDKNS-KGLNYGFVEYDDPGAAERAMATLNGRRVHQSEIRVNWAYQ----SNS 180
Query: 261 NKEEE 265
N +E+
Sbjct: 181 NNKED 185
>gi|242820506|ref|XP_002487523.1| nucleic acid-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218713988|gb|EED13412.1| nucleic acid-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 411
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++KN G + II G ++ F +VT S E AQ A+++
Sbjct: 210 VYVGNLFFDVTAEDLKNRMQSYGVIEKATIIHDARGLSKGFGYVTFDSVEAAQRAIDEMS 269
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
Q GR + V+F+ + R S P R LY+ NL++ + L + F + N
Sbjct: 270 QQIYEGRRVLVQFSASGPSEKQSRPKSKPTR----SLYIGNLAYDLSDRELNDIFKSVRN 325
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
V +V + G G+ F A+AA+ L K GR LR+ F Q
Sbjct: 326 VVEVRVAVDRQSGSPRGFAHADFLDIPSAQAALEILSSKAPHGRRLRVDFSQ 377
>gi|46122079|ref|XP_385593.1| hypothetical protein FG05417.1 [Gibberella zeae PH-1]
Length = 473
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LY+ L + ++ +F G V +V+II K + N+ FV P A+ A+
Sbjct: 81 KRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQ 140
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + + + H ++V +LS +V L + FS
Sbjct: 141 TLNGRRVHQSEIRVNWAY-------QSNTTNKEDTSNHFHIFVGDLSNEVNDEVLTQAFS 193
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + EAE A+SS+DG+ L R +R +
Sbjct: 194 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNW 247
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 145 SGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS 204
+G I+ A F++ P+ + A LY+ L +V LR+ F + +
Sbjct: 60 NGGIMSPTSAGGFRRAAPEPNKRA--------LYIGGLDQRVTEEVLRQIFETTGHVQNV 111
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
K++ + N R YGFV + AE A+ +L+G+ + +R+ + +++ +NKE+
Sbjct: 112 KIIPDKNA-RGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSN---TTNKED 167
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 5/197 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV NLP S ++ LF P G +V ++ G ++ + FV + P A A+ +
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSAN 198
+ + V GR + V A P + ++ P++ET KLYV NLS + + L F
Sbjct: 358 NGRLVEGRALEVRVAGF---PSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPF 414
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
++KV + G S GYGFV +++ A A+ L+G+ + GR + ++ +
Sbjct: 415 GEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLP 474
Query: 259 ESNKEEEDVSEDQSAES 275
S E + + + ES
Sbjct: 475 NSAVESPSTTRNSAVES 491
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 17/195 (8%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFV 124
E +Q K+ KLYV NL S + + +LF P G V + ++ K H G ++ + FV
Sbjct: 378 EDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFV 437
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFA--------KKFKKPRPQRSASAPARETQH- 175
+SP A AV + + V GR I V + + P R+++ + T
Sbjct: 438 QYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRT 497
Query: 176 -------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
LYV N+ + + L E F ++VV + + + GYGF+ F E
Sbjct: 498 VKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSES 557
Query: 229 AEAAISSLDGKELMG 243
A AI++++G + G
Sbjct: 558 ATKAIAAMNGALVGG 572
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +P S + + +LF P G VV + + + + V +P A AA++ D
Sbjct: 691 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQ-----RYGMVRFDNPSCAAAAIDHLD 745
Query: 141 TQEVSGRIIRVEFAKKFKKPRP-------QRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++ G I+ V A + Q S++ + LYVS+L V + L +
Sbjct: 746 GYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLID 805
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F +KVV E G S G+GFV FA A A++ ++G L G L ++
Sbjct: 806 LFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGV 865
Query: 254 NDDVSES 260
+ D S
Sbjct: 866 HPDAMSS 872
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
QT + + +LY+ NLP S + ++ NLFAP G + V + N ++ V A
Sbjct: 592 QTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM-------NLEYSLVWYADAP 644
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRST 189
A AV D V G+ + V+ + + ++ P +E LYV +V S+
Sbjct: 645 SATKAVQHMDGYMVEGKRLVVKRS-ELCTTNASQAGGKPIKEIDMANLYVG----RVPSS 699
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
+ F F P V ++ R YG V F A AAI LDG ++ G L ++
Sbjct: 700 LTEDQFIDLFRPFGR--VVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 757
>gi|405117835|gb|AFR92610.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 444
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++V L W+ +K+ F CG VV ++ K+R F +V A + A+ +
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAKAIEK- 256
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-------LYVSNLSWKVRSTHLR 192
D E+ GR IRV +A + K P +A AR K L++ +LS+ V +
Sbjct: 257 DGSEIDGRAIRVNYATQRK---PNEAAEKRARVFNDKQSPPAETLWIGSLSFSVTEDQVY 313
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F + + S ++ + + G G+G+V F++ ++A AA+ +++G E+ GR +R+ F
Sbjct: 314 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAALKAMNGAEIAGRAIRVDFAP 373
Query: 253 KNDDVSE 259
D E
Sbjct: 374 PKQDNGE 380
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
E ++V LSW V + L+ F + VS++VVF+ + +S G+G+V FA +
Sbjct: 193 EATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAK 252
Query: 232 AISSLDGKELMGRPLRLKF 250
AI DG E+ GR +R+ +
Sbjct: 253 AIEK-DGSEIDGRAIRVNY 270
>gi|156058654|ref|XP_001595250.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980]
gi|154701126|gb|EDO00865.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 88 KRALYVGGLDPRVTEEVLRQIFETTGHVQNVKIIPDKNSKGFNYGFVEYDDPGAAERAMQ 147
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S + H ++V +LS +V L + FS
Sbjct: 148 TLNGRRVHQAEIRVNWAY-------QSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 200
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
A F VS ++V+++ GRS GYGF +F +++AE A+SS+DG+ L R +R + +
Sbjct: 201 A-FGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKALSSMDGEWLGSRAIRCNWANQKG 259
Query: 256 DVSESNKE 263
S S ++
Sbjct: 260 QPSISQQQ 267
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 145 SGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS 204
+G ++ + A F + R+A P + LYV L +V LR+ F + +
Sbjct: 66 NGGVMSPDSAGGFVR----RAAPEPNKRA---LYVGGLDPRVTEEVLRQIFETTGHVQNV 118
Query: 205 KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
K++ + N + YGFV + AE A+ +L+G+ + +R+ + +++ SNKE+
Sbjct: 119 KIIPDKNS-KGFNYGFVEYDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSN---TSNKED 174
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 94 EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153
+++ +F G + +++ + GK++ F FV E A++AV + + R + V
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 154 AKK-----------FKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNP 201
A+K F+K R +RS+ R TQ LYV NL + T L++ F N
Sbjct: 69 AQKKNERLDELRSHFEKQRAERSS----RYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNI 124
Query: 202 VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
S+KV+ +SN RS G+GFV F+ EEA A++ ++GK +PL + Q+ +D
Sbjct: 125 TSAKVMTDSNN-RSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKED 178
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL S +K F G + +++ +++ F FV ++PEEA AV + +
Sbjct: 100 LYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMN 159
Query: 141 TQEVSGRIIRVEFAKK 156
+ + + V A++
Sbjct: 160 GKICGSKPLYVALAQR 175
>gi|407927556|gb|EKG20446.1| hypothetical protein MPH_02256 [Macrophomina phaseolina MS6]
Length = 485
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 15/192 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG---GKNRNFAFVTMASPEEAQA 134
+R LYV L + ++ +F G VV V+II K K N+ FV P A+
Sbjct: 86 KRALYVGGLDPRITEDVLRQIFETAGHVVSVKIIPDKNKFQSKGLNYGFVEYDDPGTAER 145
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--LYVSNLSWKVRSTHLR 192
A+ + + V IRV +A + S + P +T + ++V +LS +V L
Sbjct: 146 AMQTLNGRRVHQSEIRVNWAYQ--------SNNQPKEDTSNHFHIFVGDLSNEVNDEVLL 197
Query: 193 EFFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251
+ FSA F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 198 QAFSA-FGQVSEARVMWDMKTGRSRGYGFVAFRDRGDAEKALSSMDGEWLGSRAIRCNWA 256
Query: 252 QKNDDVSESNKE 263
+ S S ++
Sbjct: 257 NQKGQPSISQQQ 268
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 144 VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS 203
+SG ++ A + + R+A P + LYV L ++ LR+ F + VS
Sbjct: 63 MSGSVMSPTSAGGYVR----RAAPEPNKRA---LYVGGLDPRITEDVLRQIFETAGHVVS 115
Query: 204 SKVVFESNEGRSAG--YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
K++ + N+ +S G YGFV + AE A+ +L+G+ + +R+ + +++ N
Sbjct: 116 VKIIPDKNKFQSKGLNYGFVEYDDPGTAERAMQTLNGRRVHQSEIRVNWAYQSN-----N 170
Query: 262 KEEEDVS 268
+ +ED S
Sbjct: 171 QPKEDTS 177
>gi|33356910|pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+N
Sbjct: 7 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 66
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 67 NGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFSQYG 115
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 116 RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 168
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 45/79 (56%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+++ L V+ L + + F + + S K+V + G+S GYGFV+++ +A+
Sbjct: 2 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 61
Query: 232 AISSLDGKELMGRPLRLKF 250
AI++L+G +L + +++ +
Sbjct: 62 AINTLNGLKLQTKTIKVSY 80
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 8/201 (3%)
Query: 63 TTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFA 122
T ++ T + LY+ NL + IK F+ G V+ V+I+K G ++ F
Sbjct: 200 TFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFG 259
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQH 175
FV+ +PE A+ A + + + + V A+K ++ ++ +
Sbjct: 260 FVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGS 319
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
+Y+ N++ +V LRE F+ F ++S + +G S G+GFV + T EEA+ A+S+
Sbjct: 320 NVYIKNINDEVGDDALRERFN-EFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSN 378
Query: 236 LDGKELMGRPLRLKFGQKNDD 256
+ G G+PL + Q+ ++
Sbjct: 379 MRGVMFYGKPLYVAIAQRKEE 399
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L S + +F GT+ V + + N + +V S +A A+ +
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IRV ++ + P +RS ++V NL+ V + L+E F F
Sbjct: 100 NHSLILDKPIRVMWSNR--DPDARRSGVG-------NVFVKNLNDLVDNVSLQELF-CKF 149
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V ++ +G S GYGFV FA +E A+A+I +L+ GR L + K + S
Sbjct: 150 GDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERST 209
Query: 260 SNKEE 264
+N ++
Sbjct: 210 NNDDK 214
>gi|345315973|ref|XP_001509329.2| PREDICTED: nucleolin-like, partial [Ornithorhynchus anatinus]
Length = 638
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R L+V NLP+ + E+K +F VDV ++ K G ++ A++ + +A A+ +
Sbjct: 341 RTLFVKNLPYKVTQEEMKEVFEDA---VDVRLVTGKDGMSKGIAYIEFKTEADADKALEE 397
Query: 139 FDTQEVSGRIIRVEF-AKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFS 196
E+ GR I +++ +K + R A + K + V+NL++ L+E F
Sbjct: 398 KQGTEIDGRSIILDYTGEKSQGLENSRGGKNNAWSGESKTIVVNNLAYSATEEGLQEVFE 457
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKN 254
+S V ++++GR GY FV F+T EEA+ A++SL+ E+ GR +RL+ G KN
Sbjct: 458 K----ATSIKVPQNHQGRPKGYAFVEFSTPEEAKEALNSLNNVEIEGRTIRLEMQGSKN 512
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 19/178 (10%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ + V NL +S + ++ +F +++ ++ G+ + +AFV ++PEEA+ A+N
Sbjct: 436 KTIVVNNLAYSATEEGLQEVFEKA---TSIKVPQNHQGRPKGYAFVEFSTPEEAKEALNS 492
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-QH---KLYVSNLSWKVRSTHLREF 194
+ E+ GR IR+E Q S + AR H L+V LS + L+E
Sbjct: 493 LNNVEIEGRTIRLEM---------QGSKNTNARGGFSHPFKTLFVKGLSEETTEETLKES 543
Query: 195 FSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F + V +++V + G S G+GFV F T EEA+AA +++ E+ G + L + +
Sbjct: 544 FDGS---VRARIVTDRETGSSKGFGFVDFNTAEEAKAAKEAMEDGEIDGNKVTLDWAK 598
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 89/181 (49%), Gaps = 15/181 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL +S + E+K + T D+ ++ + G +R F +V S ++ + A+
Sbjct: 257 LFIGNLNFSKTAPELKTGLSDFFTKNDLTVLDVRVGVSRKFGYVDFESADDLEKAL---- 312
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E++G + F + K + + + R+ + L+V NL +KV ++E F +
Sbjct: 313 --ELNGSKV---FGNEMKLEKAKAKETKKERDART-LFVKNLPYKVTQEEMKEVFE---D 363
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSE 259
V ++V +G S G ++ F T+ +A+ A+ G E+ GR + L + G+K+ +
Sbjct: 364 AVDVRLV-TGKDGMSKGIAYIEFKTEADADKALEEKQGTEIDGRSIILDYTGEKSQGLEN 422
Query: 260 S 260
S
Sbjct: 423 S 423
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A A+
Sbjct: 86 KRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAADRAMQ 145
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE--TQH-KLYVSNLSWKVRSTHLREF 194
+ + V IRV +A + SA+ +E + H ++V +LS +V L +
Sbjct: 146 TLNGRRVHQSEIRVNWAYQ--------SANTTTKEDTSNHFHIFVGDLSNEVNDEVLTQA 197
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
FS F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 198 FSV-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 253
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 42/221 (19%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAE--IKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMAS 128
T K++ ++F S V + + F+ G+V + ++ K G++R + FV
Sbjct: 169 TTKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRD 228
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR--PQRSASA------------------ 168
+A+ A++ D + + R IR +A + +P Q++ A
Sbjct: 229 RPDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAMQAMGMTPTTPYGHHHFPTHG 288
Query: 169 -----------PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
PA +T YV NL+ + L F NF V ES G
Sbjct: 289 MQSYEMVLNQTPAYQT--TCYVGNLTPYTTANDLVPLFQ-NFG-----YVVESRFQSDRG 340
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
+ F+ T E A +AI +L+G + GRPL+ +G+ + S
Sbjct: 341 FAFIKMDTHENATSAICNLNGYNVNGRPLKCSWGKDKNTAS 381
>gi|345566791|gb|EGX49733.1| hypothetical protein AOL_s00078g222 [Arthrobotrys oligospora ATCC
24927]
Length = 303
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
Query: 40 TPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLF 99
+P LS PT ++ S+L + + + + Q +++YV N+ + +++ F
Sbjct: 73 SPPLSRILPTAATQTRMYSSLPEQSPDHRDFQGNPLPPTKRIYVGNISYGIRGEDLEREF 132
Query: 100 APCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK 159
G VV +++ G ++ F +V + A AAV + V GR I V++ + +
Sbjct: 133 GEFGKVVSAKVVYDPRGLSKGFGYVEYEEQDAATAAVQKMHGLIVDGRRINVQYVLRPDR 192
Query: 160 PRPQRSAS-APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGY 218
P S AP+R L++ NLS+ + L E F+ N +V + G+ G+
Sbjct: 193 EGPTNGESNAPSR----TLFIGNLSFDITDKDLNELFAGVRNCTDVRVAIDRRTGQPRGF 248
Query: 219 GFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F AEAA L+ K + GR +R+ F
Sbjct: 249 AHADFVDIASAEAAKGQLETKSIYGRQIRIDF 280
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++YV N+S+ +R L F VS+KVV++ G S G+G+V + ++ A AA+
Sbjct: 113 RIYVGNISYGIRGEDLEREFGEFGKVVSAKVVYDP-RGLSKGFGYVEYEEQDAATAAVQK 171
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNKE 263
+ G + GR + +++ + D +N E
Sbjct: 172 MHGLIVDGRRINVQYVLRPDREGPTNGE 199
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFA---FVTMASPEEAQA 134
R L++ NL + + ++ LFA DV + I + G+ R FA FV +AS A+A
Sbjct: 205 RTLFIGNLSFDITDKDLNELFAGVRNCTDVRVAIDRRTGQPRGFAHADFVDIAS---AEA 261
Query: 135 AVNQFDTQEVSGRIIRVEFAK 155
A Q +T+ + GR IR++F K
Sbjct: 262 AKGQLETKSIYGRQIRIDFTK 282
>gi|342870153|gb|EGU73450.1| hypothetical protein FOXB_16088 [Fusarium oxysporum Fo5176]
Length = 474
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LY+ L + ++ +F G V +V+II K + N+ FV P A+ A+
Sbjct: 83 KRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQ 142
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + + + H ++V +LS +V L + FS
Sbjct: 143 TLNGRRVHQSEIRVNWAY-------QSNTTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 195
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F VS ++V+++ GRS GYGFV+F + EAE A+SS+DG+ L R +R +
Sbjct: 196 A-FGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNW 249
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 146 GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK 205
G I+ A F++ P+ + A LY+ L +V LR+ F + + K
Sbjct: 63 GGIMSPTSAGGFRRAAPEPNKRA--------LYIGGLDQRVTEEVLRQIFETTGHVQNVK 114
Query: 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
++ + N R YGFV + AE A+ +L+G+ + +R+ + +++ +NKE+
Sbjct: 115 IIPDKNA-RGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSN---TTNKED 169
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ N+ + E + LF G V I + + G++R F FV + EEAQ AV+ +
Sbjct: 229 LYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLN 288
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++ GR + V A+K +K Q ++ LYV NL V LR
Sbjct: 289 DKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLRA 348
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V ++G S G+GFV +++ EEA A++ ++ K + +PL + Q+
Sbjct: 349 EFEP-FGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSHAQR 407
Query: 254 ND 255
+
Sbjct: 408 RE 409
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + FA G V+ ++ + G ++ + FV + E A+ A+ +
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVN 195
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ + + V R +R + + Q LY+ N+ +V F
Sbjct: 196 GMLLNDKKVYV----GHHISRKERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQG 251
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
N V+S V+ EGRS G+GFV++ T EEA+ A+ +L+ K+ GR L + QK +
Sbjct: 252 N-VTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQK-----K 305
Query: 260 SNKEEE 265
+ +EEE
Sbjct: 306 AEREEE 311
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL +++ F P GT+ ++++ G ++ F FV +SPEEA AV + +
Sbjct: 332 LYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMN 391
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
+ + + + V A++ ++ R Q+ S A+ Q
Sbjct: 392 NKMIGSKPLYVSHAQR-REVRRQQLESQIAQRNQ 424
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L V L E F+ PV+S +V ++ RS GY +V++ + E A+
Sbjct: 48 LYVGELDPTVTEAMLFEIFNM-IGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 106
Query: 236 LDGKELMGRPLRLKFGQKN 254
L+ + RP R+ + Q++
Sbjct: 107 LNYSLIKNRPCRIMWSQRD 125
>gi|255934068|ref|XP_002558315.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582934|emb|CAP81139.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 496
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G VV V+II K K N+ FV P A+ A
Sbjct: 90 KRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFTTKGHNYGFVEFDDPGAAERA 149
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + + IRV +A + S S ++V +LS +V L + F
Sbjct: 150 MQTLNGRRIHQSEIRVNWAYQ------SNSTSKEDTSNHFHIFVGDLSNEVNDEVLTQAF 203
Query: 196 SANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
SA F VS ++V+++ GRS GYGFV+F + EA+ A++S+DG+ L R +R + +
Sbjct: 204 SA-FGSVSEARVMWDMKTGRSRGYGFVAFRDRAEADKALNSMDGEWLGSRAIRCNWANQK 262
Query: 255 DDVSESNKE 263
S S ++
Sbjct: 263 GQPSISQQQ 271
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN-EGRSAGYGFV 221
+R+A P + LYV L +V L++ F + VS K++ + N + YGFV
Sbjct: 82 RRAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFTTKGHNYGFV 138
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
F AE A+ +L+G+ + +R+ + +++ S+
Sbjct: 139 EFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTSK 176
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 92/171 (53%), Gaps = 5/171 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVV-DVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV NL S S +I +F+ + ++++ K N+AF+ E+A+ A+N
Sbjct: 102 LYVGNLAKSASEEQINEIFSSVSNPIKSIKLLNDKNKLGFNYAFIEFNESEDAEKALNSL 161
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++V+G I+V +A + + + E + ++V +LS +V L++ F+
Sbjct: 162 NGKDVNGSDIKVNWAYQ----SAAIAGGSTPEEPSYNIFVGDLSSEVNDEALKKAFTKFG 217
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ + V+++ RS GYGFV+F +E+AE A+ S++G+ L GR +R +
Sbjct: 218 SLKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSMNGEWLGGRAIRCNW 268
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 165 SASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
SA RE +K LYV NL+ + E FS+ NP+ S + Y F+ F
Sbjct: 89 SAVNGGREISNKILYVGNLAKSASEEQINEIFSSVSNPIKSIKLLNDKNKLGFNYAFIEF 148
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
E+AE A++SL+GK++ G +++ + ++ ++ + EE
Sbjct: 149 NESEDAEKALNSLNGKDVNGSDIKVNWAYQSAAIAGGSTPEE 190
>gi|407039916|gb|EKE39893.1| enhancer binding protein-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 12/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK---HKGG--KNRNFAFVTMASPEEAQAA 135
L++ NLP++ + ++K +F+ VV++ +IK KG KN AF+T+ + EE + A
Sbjct: 115 LFIKNLPFAITEEKLKEMFSKF-EVVEITLIKTHRKKGNVTKNNGIAFITVKTAEEQKKA 173
Query: 136 VNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
+ + + EV GR I V A KK + + + + P ++ ++V NL + + ++
Sbjct: 174 IAEMNNFEVEGRKITVAAAYKKAENKQTTKKTNEPKSLSETNVFVKNLPFTLNDEGFKKL 233
Query: 195 FSANFNPVSSKVVFESNE----GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
F ++ V + +V N+ RS GYGFV+F T E+ + AI+ +D E+ GR +
Sbjct: 234 FEK-YDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIAEMDNFEVEGRKI 288
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 24/187 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L +S V +I+N F +V+II G +R FAF+ A+P+EA+ A+ + D
Sbjct: 4 LYVSHLDYSLKVEDIQNAFKTYNPK-EVKIISTPIGYSRGFAFIEFATPQEAEKAL-EMD 61
Query: 141 TQEVSGRIIRVEFA--------------KKFKKPRPQRSASAPARE---TQHKLYVSNLS 183
+ + I+V+ A + FK R R R T + L++ NL
Sbjct: 62 RRTIGKMEIKVQKALPREETTTERKMNRRGFKGKRNTRKRHLVKRTNEVTDNMLFIKNLP 121
Query: 184 WKVRSTHLREFFSANFNPVSSKVV----FESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
+ + L+E FS F V ++ + N ++ G F++ T EE + AI+ ++
Sbjct: 122 FAITEEKLKEMFSK-FEVVEITLIKTHRKKGNVTKNNGIAFITVKTAEEQKKAIAEMNNF 180
Query: 240 ELMGRPL 246
E+ GR +
Sbjct: 181 EVEGRKI 187
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV NLP S ++ LF P G +V ++ G ++ + FV + P A A+ +
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSAN 198
+ + V GR + V A P + ++ P++ET KLYV NLS + + L F
Sbjct: 359 NGRLVEGRALEVRVAGF---PSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPF 415
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
++KV + G S GYGFV +++ A A+ L+G+ + GR + ++
Sbjct: 416 GEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 466
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 8/185 (4%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFV 124
E +Q K+ KLYV NL S + + +LF P G V + ++ K H G ++ + FV
Sbjct: 379 EDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFV 438
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK------LY 178
+SP A AV + + V GR I V + P + +P+ K LY
Sbjct: 439 QYSSPHHAAEAVIHLNGRLVDGRKIEVRVSG-IPSTLPNSAVESPSTTRTVKEIDMSNLY 497
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V N+ + + L E F ++VV + + + GYGF+ F E A AI++++G
Sbjct: 498 VCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNG 557
Query: 239 KELMG 243
+ G
Sbjct: 558 ALVGG 562
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +P S + + +LF P G VV + + + + V +P A AA++ D
Sbjct: 681 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQ-----RYGMVRFDNPSCAAAAIDHLD 735
Query: 141 TQEVSGRIIRVEFAKKFKKPRP-------QRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++ G I+ V A + Q S++ + LYVS+L V + L +
Sbjct: 736 GYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLID 795
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F +KVV E G S G+GFV FA A A++ ++G L G L ++
Sbjct: 796 LFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGV 855
Query: 254 NDDVSES 260
+ D S
Sbjct: 856 HPDAMSS 862
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
QT + + +LY+ NLP S + ++ NLFAP G + V + N ++ V A
Sbjct: 582 QTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM-------NLEYSLVWYADAP 634
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRST 189
A AV D V G+ + V+ + + ++ P +E LYV +V S+
Sbjct: 635 SAIKAVQHMDGYMVEGKRLVVKRS-ELCTTNASQAGGKPIKEIDMANLYVG----RVPSS 689
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
+ F F P V ++ R YG V F A AAI LDG ++ G L ++
Sbjct: 690 LTEDQFIDLFRPFGR--VVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 747
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K++F+ G + V+++ GK++ F FV+ S E A+ AV + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 141 TQEVSGRIIRVEFAKK-----------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G++I V A+K F++ + +R KLY+ NL +
Sbjct: 252 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG----VKLYIKNLDDTIDDE 307
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS+ F + S+V EG+S G+G + F++ E+A A++ ++G+ L +PL +
Sbjct: 308 KLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Query: 250 FGQKN 254
Q++
Sbjct: 366 LAQRH 370
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAI---- 154
Query: 141 TQEVSGRIIRV--EFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G++++ F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 155 -EEMNGKLLKGCKVFVGRFK-NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSK 212
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 213 YGKTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 72 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 123 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 164
>gi|367051094|ref|XP_003655926.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
gi|347003190|gb|AEO69590.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
Length = 500
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V V+II K + N+ FV P A+ A+
Sbjct: 89 KRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNARGYNYGFVEYDDPGAAERAMQ 148
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + V IRV +A + +A+ ++V +LS +V L + FSA
Sbjct: 149 TLNGRRVHQSEIRVNWAYQ------SNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA 202
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 203 -FGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNW 255
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 43/209 (20%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G+V + ++ K G++R + FV +A+ A++ D + + R IR +A +
Sbjct: 200 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQK 259
Query: 158 KKPR-----------------------PQRSASA--------PARETQHKLYVSNLSWKV 186
+P P + PA +T YV NL+
Sbjct: 260 GQPSIAQQQAMQQMGLTPTTPYGHHHFPTHGIHSYDMIVNQTPAWQT--TCYVGNLTPYT 317
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ F NF V ES G+ FV T E A AI L+G + GRPL
Sbjct: 318 TQNDIVPLFQ-NFG-----FVVESRFQADRGFAFVKMDTHENAAMAICQLNGYNVNGRPL 371
Query: 247 RLKFGQKNDDVSESNKEEEDVSEDQSAES 275
+ +G+ D + ++ + D ++ S +S
Sbjct: 372 KCSWGK---DKTPAHHQPFDPNQPYSPQS 397
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + S K++ + N R YGFV
Sbjct: 81 RRAAPEPNKRA---LYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNA-RGYNYGFVE 136
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
+ AE A+ +L+G+ + +R+ + ++++ +NKE+
Sbjct: 137 YDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNN---ANKED 175
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+N
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 101 NGLKLQTKTIKVSYA---------RPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYG 149
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 150 RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSY 114
>gi|327357360|gb|EGE86217.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces dermatitidis ATCC 18188]
Length = 492
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 10/188 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LY+ L + ++ +F G V V+II K K N+ FV P A+ A+
Sbjct: 91 KRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMA 150
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S + H ++V +LS +V L + FS
Sbjct: 151 TLNGRRVHQSEIRVNWAY-------QSNNSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFS 203
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
A F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 204 A-FGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQKG 262
Query: 256 DVSESNKE 263
S S ++
Sbjct: 263 QPSISQQQ 270
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ F + R+A P + LY+ L +V LR+ F +
Sbjct: 65 TSPMSGNMMSPTSTGGFVR----RAAPEPNKRA---LYIGGLDARVTEDILRQIFETTGH 117
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
S K++ + N + YGFV + AE A+++L+G+ + +R+ + ++++ S
Sbjct: 118 VQSVKIIPDKNS-KGLNYGFVEYDDPGAAERAMATLNGRRVHQSEIRVNWAYQSNN---S 173
Query: 261 NKEE 264
NKE+
Sbjct: 174 NKED 177
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV NLP S ++ LF P G +V ++ G ++ + FV + P A A+ +
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSAN 198
+ + V GR + V A P + ++ P++ET KLYV NLS + + L F
Sbjct: 271 NGRLVEGRALEVRVAGF---PSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPF 327
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
++KV + G S GYGFV +++ A A+ L+G+ + GR + ++
Sbjct: 328 GEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 378
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFV 124
E +Q K+ KLYV NL S + + +LF P G V + ++ K H G ++ + FV
Sbjct: 291 EDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFV 350
Query: 125 TMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK------LY 178
+SP A AV + + V GR I V + P + +P+ K LY
Sbjct: 351 QYSSPHHAAEAVIHLNGRLVDGRKIEVRVSG-IPSTLPNSAVESPSTTRTVKEIDMSNLY 409
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
V N+ + + L E F ++VV + + + GYGF+ F E A AI++++G
Sbjct: 410 VCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNG 469
Query: 239 KELMGRPLRLK 249
+ G + ++
Sbjct: 470 ALVGGEMIIVR 480
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +P S + + +LF P G VV + + + + V +P A AA++ D
Sbjct: 593 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQ-----RYGMVRFDNPSCAAAAIDHLD 647
Query: 141 TQEVSGRIIRVEFAKKFKKPRP-------QRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++ G I+ V A + Q S++ + LYVS+L V + L +
Sbjct: 648 GYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLID 707
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F +KVV E G S G+GFV FA A A++ ++G L G L ++
Sbjct: 708 LFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGV 767
Query: 254 NDDVSES 260
+ D S
Sbjct: 768 HPDAMSS 774
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
QT + + +LY+ NLP S + ++ NLFAP G + V + N ++ V A
Sbjct: 494 QTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM-------NLEYSLVWYADAP 546
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRST 189
A AV D V G+ + V+ + + ++ P +E LYV +V S+
Sbjct: 547 SAIKAVQHMDGYMVEGKRLVVKRS-ELCTTNASQAGGKPIKEIDMANLYVG----RVPSS 601
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
+ F F P V ++ R YG V F A AAI LDG ++ G L ++
Sbjct: 602 LTEDQFIDLFRPFGR--VVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 659
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++K F G ++ +++ GK R F FV+ PE A+ AV + +
Sbjct: 109 VYIKNFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMN 168
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+ + + V A+K R +R A + + K LYV NL +
Sbjct: 169 NKTFEEKTLYVGRAQK----RAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDE 224
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FSA S+KV+ E GRS G+GFV F++ EEA A++ ++G+ ++ +PL +
Sbjct: 225 KLRKEFSAFGTITSAKVMTEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVA 282
Query: 250 FGQK 253
Q+
Sbjct: 283 LAQR 286
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 5/173 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +I+ + G +R + FV + E A+ A+ + +
Sbjct: 17 VFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARNAIEKVN 75
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++G+ + F +F R + + + +Y+ N S ++ L+ +F F
Sbjct: 76 GMLLNGKKV---FVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFET-FG 131
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V +G+ G+GFVS+ E AE A++ ++ K + L + QK
Sbjct: 132 KIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQK 184
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++K +F G + V +++ G+++ F FV SP+EA AV +
Sbjct: 213 VYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 272
Query: 141 TQEVS------GRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++ S GR + +E +KF+K A + LY+ NL V
Sbjct: 273 GKKFSDKEWYVGRAQKKSEREIELKEKFEK----NLQEAADKYQNTNLYLKNLDDTVDDE 328
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F A F ++S V + G S G GFV+F + ++A A++ ++ K + +PL +
Sbjct: 329 KLRELF-AEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVA 387
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 388 LAQRKED 394
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S A++ ++FA G VV V + + K+ +A+V +P +A A+
Sbjct: 34 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 93
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++GR IR+ ++ + P ++S +A +++ NL + + L + F
Sbjct: 94 NFTPINGRPIRIMYSN--RDPSLRKSGTA-------NIFIKNLDKSIDNKALYDTFCVFG 144
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV + G S GYGFV + E A AAI L+G
Sbjct: 145 NILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNG 182
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQTQKQN----IRR---- 79
+++ S SL Y N+ T + L T + +P + N +R+
Sbjct: 61 VRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTA 120
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL S + + F G ++ ++ G+++ + FV E A AA+ +
Sbjct: 121 NIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL 180
Query: 140 DTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ + + V F +K Q ++P + +YV NL+ L+E F
Sbjct: 181 NGMLMNDKKVYVGPFVRK------QERDNSPGNVKFNNVYVKNLAETTTEDDLKEIF-GK 233
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
F ++S VV +GRS +GFV+F + +EA A+ L+GK+
Sbjct: 234 FGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKF 276
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V+ L + F+ VS +V + +S GY +V++ T +A A+ L
Sbjct: 34 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 93
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + ++ + +S
Sbjct: 94 NFTPINGRPIRIMYSNRDPSLRKSG 118
>gi|189204223|ref|XP_001938447.1| RNA binding domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985546|gb|EDU51034.1| RNA binding domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 319
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 11/219 (5%)
Query: 57 CSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116
+T + TT+ + Q++ + LY+ NL + + ++K +F+ G V V+I+ G
Sbjct: 107 AATNRPTTMGRQSRQSRNTEPNKMLYIGNLYYEVTADQLKRVFSRFGEVESVKIVYDNRG 166
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ---RSASA--PAR 171
+R F +V A+ +AQAA++ D Q GR + V+ + +P+P R+AS A
Sbjct: 167 LSRGFGYVEFANMADAQAAIDNLDMQVFEGRNMVVQ----YHQPKPNSMSRNASGSFDAN 222
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
L++ N+S+++ L + F N + +V + G+ G+ F A
Sbjct: 223 APSKTLFIGNMSFEMSDKDLNDLFRDIRNVMDVRVAIDRRTGQPRGFAHADFIDVASATK 282
Query: 232 AISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSED 270
A L K + GR LR+ + + SE + D ++D
Sbjct: 283 AKEVLSEKVIYGRQLRIDYSKPG--TSEQRGKRADSTQD 319
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NLP S+ + F G VV ++I G ++ F++ ++A+AAV
Sbjct: 184 LFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRS 188
+E+ G+ + A+K + +RS+ A+ + K LYV NL +
Sbjct: 244 HEKEIEGKKLYCGRAQK----KAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDD 299
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
LRE F N S+KV+ + N GRS G+GFV F++ EEA A++ ++G+ G+PL +
Sbjct: 300 EGLREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Query: 249 KFGQKNDD 256
Q+ +D
Sbjct: 359 GLAQRKED 366
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 92/181 (50%), Gaps = 13/181 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + + F G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P +RS Q +++ NL + + L + FS+
Sbjct: 64 NFDVIKGKPIRIMWSQR--DPSLRRSG-------QGNVFIKNLDRSIDNKALYDTFSSFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KVV + N S G+GFV + + E A+ AI ++G + + + + +F +ND +
Sbjct: 115 NILSCKVVCDING--SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMR 172
Query: 259 E 259
E
Sbjct: 173 E 173
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ G ++ F FV S E AQ A+
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAI---- 146
Query: 141 TQEVSGRIIRVE--FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
++V+G ++ + F +FK + A + L+V NL + L E F
Sbjct: 147 -EKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQF 205
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
VS KV+ + G S +GF+SF ++AEAA+ + KE+ G+ L QK
Sbjct: 206 GEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQK 260
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + L + F A+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + G+P+R+ + Q++ + S +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQ 89
>gi|212528572|ref|XP_002144443.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
gi|210073841|gb|EEA27928.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
Length = 728
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 52 LCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAP------CGTV 105
L ++ S +T E+ E K +RR+L+V +LP S + ++ F+ V
Sbjct: 21 LVEEIVSGKTETNGES-TETPAKPQMRRELFVRSLPASATTEKLTEFFSQSYVLKHATVV 79
Query: 106 VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS 165
+D E K KG + FVT A E+AQ A+ +F+ + GR I+VE A+ K+ ++
Sbjct: 80 IDPETKKSKG-----YGFVTFADIEDAQRALEEFNGADFEGRKIKVEVAQPRKREIDEKG 134
Query: 166 A-SAPARETQH---------------KLYVSNLSWKVR-STHLREFFSANFNPVSSKVVF 208
S P E+ +L V NL W ++ S L F + F V VV
Sbjct: 135 GKSVPTAESVRLKAERTKEREQTAPPRLIVRNLPWTIKESDQLAALFRS-FGKVKHAVVP 193
Query: 209 ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND--DVSESNKEEED 266
+ AG+GFV ++ AE A+ +++GKE+ GR L + + + + ++ N E++D
Sbjct: 194 KKG-NVQAGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAVDWAVEKSVWEEAQQNAEKKD 252
Query: 267 VSED 270
V ED
Sbjct: 253 VDED 256
>gi|50555934|ref|XP_505375.1| YALI0F13475p [Yarrowia lipolytica]
gi|49651245|emb|CAG78182.1| YALI0F13475p [Yarrowia lipolytica CLIB122]
Length = 422
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+ ++V L W+ + FA G V I + G+++ F +V AS +AQ V +
Sbjct: 168 KTVFVGGLSWNVDDDWLTKEFADAGAVSARVITEKATGRSKGFGYVDFASGADAQKCVEE 227
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR------ETQHKLYVSNLSWKVRSTHLR 192
F +E+ GR +R++ + ++ Q+ ++ E L+V NLS+ L
Sbjct: 228 FQDKEIDGRTVRLDISTNVRQTPEQKQRDRSSQYGDQLSEPADTLFVGNLSFDTNRDDLF 287
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F + VS ++ + G+G+V F + +EA+AA+ L G E +GR RL +
Sbjct: 288 GIFGEYGSVVSIRLPTHPETEQPKGFGYVQFGSVDEAKAALEGLSGYEYLGRSFRLDY 345
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + + +K++F+ G V V I+ GK+++F FV SP++A+ AV+ +
Sbjct: 197 LYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMN 256
Query: 141 TQEVSGRIIRVEFAKKFKKPRP----QRSASAPARETQH----KLYVSNLSWKVRSTHLR 192
+ + + V A++ K R Q R T+ LYV NL+ + L+
Sbjct: 257 GSVIGSKTLFVGKAQR-KSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLK 315
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
E FSA +S KV+ N+G S +GFV FA+ EEA A+ +L+G L
Sbjct: 316 EVFSAYGKILSVKVICH-NDGTSKQFGFVCFASPEEANKALVALNGHPL 363
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 17/224 (7%)
Query: 60 LQDTTVETKPEQT---QKQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVEII 111
L T ++ KP + Q+ RK L+V NL +S S + ++++F+ GT++ ++
Sbjct: 78 LNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVA 137
Query: 112 KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFAKKFKKPRPQRSASAPA 170
+ G+++ F FV S + A A + G+ + V +F KK +R+A+AP
Sbjct: 138 G-ENGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKK-----TERTAAAPC 191
Query: 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230
E LYV NL + L++ FS VSS + +EG+S +GFV+F + ++A+
Sbjct: 192 -EVFTNLYVKNLDETITEDGLKDMFSV-VGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAK 249
Query: 231 AAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAE 274
A+ ++G + + L + Q+ + + K+E ++S E
Sbjct: 250 KAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTE 293
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFA 122
T P + Q LYV +L + +++ F G + + + + + GK+ +A
Sbjct: 2 TAAVAPWKQQVLQRGASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYA 61
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNL 182
+V + S +A A+ + + G+ +R+ + + + P +++ A L+V NL
Sbjct: 62 YVNLYSHAQASRALGLLNHTNLKGKPMRIMWCQ--RDPFARKTGFA-------NLFVKNL 112
Query: 183 SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ + S+ L FS +S KV E+ GRS G+GFV F +++ A A ++L L
Sbjct: 113 DFSISSSCLESIFSKYGTILSCKVAGEN--GRSKGFGFVQFESQDSALVAQTALHDTMLG 170
Query: 243 GRPLRL-KFGQKND 255
G+ L + KF +K +
Sbjct: 171 GKKLHVCKFVKKTE 184
>gi|398407815|ref|XP_003855373.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
gi|339475257|gb|EGP90349.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
Length = 401
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 12/190 (6%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G V +V+II K K N+ FV P A+ A
Sbjct: 68 KRALYVGGLDPRVTEDVLKQIFETTGHVQNVKIIPDKNFQSKGFNYGFVEYDDPGAAERA 127
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREF 194
+ + + V + IRV +A Q + ++ + H ++V +LS +V L +
Sbjct: 128 MQTLNGRRVHQQEIRVNWAY-------QSNTTSKEDTSNHFHIFVGDLSNEVNDEVLLQA 180
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 181 FSA-FGTVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMDGEWLGSRAIRCNWANQ 239
Query: 254 NDDVSESNKE 263
S S ++
Sbjct: 240 KGQPSFSQQQ 249
>gi|297741610|emb|CBI32742.3| unnamed protein product [Vitis vinifera]
Length = 127
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 28/146 (19%)
Query: 108 VEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSA 166
VE+I K G++R F FVTM++ EE +AA QF+ E+ GR +RV S
Sbjct: 2 VEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVN------------SG 49
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
PAR R L FS ++V+++ GRS G+GFV++ +
Sbjct: 50 PPPAR---------------RENTLETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSA 94
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQ 252
EE AI SLDG +L GR +R+ +
Sbjct: 95 EEVNRAIESLDGVDLNGRSIRVTMAE 120
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVF--NLPWSFSVAEIKNLFAPCGTVVDVEII-KHKGGK 117
D + E KP++ K VF L W+ + F GTVV+ +I + G+
Sbjct: 186 DDESEEQKPQKAAKSESGESCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGR 245
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP---------QRSASA 168
++ F +V SPE A+AAV +E+ GR++ ++ + PRP QR+++
Sbjct: 246 SKGFGYVDFDSPEAAKAAVAVNGQKEIDGRMVNLDIS----TPRPAQNNNGFAQQRASNF 301
Query: 169 PARET--QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
+++ +++ NLS+ +R FS+ S ++ + N GR G+G+V+F +
Sbjct: 302 GDKQSPPSDTVFIGNLSFNATEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDSI 361
Query: 227 EEAEAAISSLDGKELMGRPLRLKF 250
+ A+ + ++G + GRP RL F
Sbjct: 362 DAAKQCV-EMNGHFIAGRPCRLDF 384
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K++F+ G + V+++ GK++ F FV+ S E A+ AV + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 141 TQEVSGRIIRVEFAKK-----------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G++I V A+K F++ + +R KLY+ NL +
Sbjct: 252 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG----VKLYIKNLDDTIDDE 307
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS+ F + S+V EG+S G+G + F++ E+A A++ ++G+ L +PL +
Sbjct: 308 KLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Query: 250 FGQK 253
Q+
Sbjct: 366 LAQR 369
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAI---- 154
Query: 141 TQEVSGRIIRV--EFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G++++ F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 155 -EEMNGKLLKGCKVFVGRFK-NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSK 212
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 213 YGKTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 72 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 123 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 164
>gi|169626491|ref|XP_001806645.1| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
gi|160706106|gb|EAT76075.2| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
Length = 321
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
Query: 65 VETKPEQTQKQNI--RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFA 122
E +P ++++ N LY+ NL + + +++ +F+ G V V+I+ G +R F
Sbjct: 113 AERRPRRSRENNTPPHNTLYIGNLYYEVTTEQLQKVFSRFGEVASVKIVYDNRGMSRGFG 172
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSN 181
+V S ++AQ A++ D Q GR + V++ + K RP+R PA L++ N
Sbjct: 173 YVEFKSIDDAQTAIDNLDMQVFEGRNLVVQYHRAKSDSDRPKREFP-PANLPSKTLFIGN 231
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S+++ L + F N +V + G+ G+ F A A L K +
Sbjct: 232 MSFEMSDKDLNDLFRDIRNVNDVRVAIDRRTGQPRGFAHADFLDVASATKAKEILSAKTI 291
Query: 242 MGRPLRLKFGQ 252
GR LR+ F +
Sbjct: 292 YGRELRVDFSR 302
>gi|164424152|ref|XP_962723.2| hypothetical protein NCU07874 [Neurospora crassa OR74A]
gi|157070397|gb|EAA33487.2| hypothetical protein NCU07874 [Neurospora crassa OR74A]
Length = 480
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A+
Sbjct: 90 KRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNQKGYNYGFVEYDDPGAAERAMQ 149
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + V IRV +A + + ++ ++V +LS +V L + FSA
Sbjct: 150 TLNGRRVHQSEIRVNWAYQSNNQNKEDTSG------HFHIFVGDLSNEVNDEVLLQAFSA 203
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 204 -FGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 256
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 44/209 (21%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G+V + ++ K G++R + FV +A+ A++ D + + R IR +A +
Sbjct: 201 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQK 260
Query: 158 KKPR-----------------------PQRS--------ASAPARETQHKLYVSNLSWKV 186
+P P A PA +T YV NL+
Sbjct: 261 GQPSIAQQQAMQQMGLTPTTPYGHHHFPTHGVHSYDMIVAQTPAWQT--TCYVGNLTPYT 318
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
L F NF V ES G+ F+ T E A AI L+G ++ GRPL
Sbjct: 319 TQNDLVPLFQ-NFG-----YVVESRFQADRGFAFIKMDTHENAAMAICQLNGYQVNGRPL 372
Query: 247 RLKFGQKNDDVSESNKEEEDVSEDQSAES 275
+ +G+ N ++ D ++ S +S
Sbjct: 373 KCSWGKD----KTPNPQQFDPNQPYSPQS 397
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + + K++ + N+ + YGFV
Sbjct: 82 RRAAPEPNKRA---LYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNQ-KGYNYGFVE 137
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVS 268
+ AE A+ +L+G+ + +R+ + +++ N+ +ED S
Sbjct: 138 YDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSN-----NQNKEDTS 178
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 10/195 (5%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E Q+ + +Y+ N+ + + E+ +F GT+ +++ G +R F FV P
Sbjct: 174 ELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDP 233
Query: 130 EEAQAAVNQFDTQEV-SGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSN 181
+EA+ AV + ++ G+ V A+K K+ Q R LYV N
Sbjct: 234 KEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKN 293
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
L + LR FSA S+KV+ + +GRS G+GFV F++ EEA A++ ++G+ +
Sbjct: 294 LDDTIDDERLRREFSAFGTIKSAKVMMD--DGRSKGFGFVYFSSPEEATKAVTDMNGRIV 351
Query: 242 MGRPLRLKFGQKNDD 256
+PL + Q+ D
Sbjct: 352 GTKPLYVTLAQRKKD 366
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ + + +H ++ +A+V + +A+ A++
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G +R+ ++++ P ++S +++ NL + + + + FSA
Sbjct: 64 NFDILKGHPMRIMWSQR--DPSLRKSGVG-------NVFIKNLDRSIDNKAMYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKND 255
N +S KV + G S GYGFV F TK+ A +I ++G L G+ + + +F +ND
Sbjct: 115 NILSCKVA-QDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRND 170
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 65 VETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
++ K EQ + + I R LYV NL + ++ F+ GT+ +++ G +++
Sbjct: 269 LKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDG-RSKG 327
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
F FV +SPEEA AV + + V + + V A++ K + + R T ++
Sbjct: 328 FGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNMRM 384
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V S GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G P+R+ + Q++ + +S
Sbjct: 64 NFDILKGHPMRIMWSQRDPSLRKSG 88
>gi|332029758|gb|EGI69627.1| ELAV-like protein 2 [Acromyrmex echinatior]
Length = 359
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASP 129
QT ++ + L V LP S + EI++LF+ G V ++I+ K G++ + FV P
Sbjct: 20 QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRP 79
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
E+A+ A+N + + + I+V +A RP A A LYVS L +
Sbjct: 80 EDAEKAINTLNGLRLQNKTIKVSYA------RPSSEAIKGA-----NLYVSGLPKNMAQQ 128
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLR 247
L FS ++S+++ ++ G S G GF+ F + EAE AI L+G G P+
Sbjct: 129 DLENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIPKGSSEPIT 188
Query: 248 LKF 250
+KF
Sbjct: 189 VKF 191
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + LF P G V V++I+ + K + F FVTM + EEA A+
Sbjct: 278 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSL 337
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 338 NGYTLGNRVLQVSF 351
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NL+ + L + F F V S KV+ + + G+GFV+ EEA AI S
Sbjct: 278 IFVYNLAPETEENVLWQLFGP-FGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQS 336
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 337 LNGYTLGNRVLQVSF 351
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+N
Sbjct: 40 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 99
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 100 NGLKLQTKTIKVSYA---------RPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYG 148
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 149 RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 201
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 25 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 84
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 85 NYSDPNDADKAINTLNGLKLQTKTIKVSY 113
>gi|240274320|gb|EER37837.1| pre-mRNA splicing factor [Ajellomyces capsulatus H143]
Length = 1334
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 20/231 (8%)
Query: 31 IKLLHSSNSTPSLSYNFPTRNLCLQVCS----TLQDTTVETKPEQTQKQNIRRKLYVFNL 86
+KLL + + P F TR L + T +D T+ L+V N
Sbjct: 838 LKLLSRNGNQPRAIVEFDTREDALAAQTRDQRTFEDQTISVH------VGTNTTLFVTNF 891
Query: 87 PWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT-QEVS 145
+ A +++LF+P G VVD+ K +R F +V + A AA T QEV
Sbjct: 892 APTADEAYVRDLFSPYGEVVDIRFPSLKYNTHRRFCYVQFQTAIAAHAATELNGTQQEVV 951
Query: 146 GRI------IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
G + +++ K P ++ + P E + +++VSNL WK L E F+A
Sbjct: 952 GDLAGSAGSMKLPLVVKISDPTKRQERTGPTEEGR-EIHVSNLDWKATEDDLVELFAAYG 1010
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
++++ ++N G S G+GFV F TKE AEA++ +++ + RPL +
Sbjct: 1011 QVEAARIPRKAN-GASKGFGFVVFQTKESAEASL-AMNEQLFRSRPLHVHI 1059
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G ++ V+++ + GK+R F FV+ S E A+ AV + +
Sbjct: 192 VYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMN 251
Query: 141 TQEVSGRIIRVEFAKK-----------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+G+ I V A+K F++ + +R KLY+ NL +
Sbjct: 252 GKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQG----AKLYIKNLDENIDDE 307
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS+ F + S+V EG+S G+G + F++ E+A A++ ++G+ L +PL +
Sbjct: 308 KLRKEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSSEDAARAMTVMNGRILGSKPLNIA 365
Query: 250 FGQ 252
Q
Sbjct: 366 LAQ 368
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV S A A+
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAI---- 154
Query: 141 TQEVSGRIIR--VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G+ ++ F +FK R R A + ++ +Y+ N + LRE FS
Sbjct: 155 -EEMNGKFLKDCKVFVGRFK-SRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFST 212
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ S G+S G+GFVSF + E A A+ ++GKE+ G+P+ + QK
Sbjct: 213 YGRILSVKVMTNSC-GKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQK 267
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ ++ QR A + +++ NL + + L E FSA
Sbjct: 72 NFDVVKGKAIRLMWS--------QRDAYLR-KSGIGNVFIKNLDKSIDNKSLYECFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+SSKV+ S++ S GY FV F ++ A+ AI ++GK L
Sbjct: 123 KILSSKVM--SDDRGSKGYAFVHFQSQSAADRAIEEMNGKFL 162
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N + + +F+ G + V+I+ GK++ F F+ +A+ A+ + +
Sbjct: 201 VYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVN 260
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--------LYVSNLSWKVRSTHLR 192
++ GR I V A+K KK R + Q++ L+V NL+ HLR
Sbjct: 261 GKQFGGRKIYVSRAQK-KKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEHLR 319
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ F+ S+KV+ + GR G+GFVSF+++EEA+ A+ + GK L RPL + + +
Sbjct: 320 KIFAPFGTVTSAKVIVKG--GRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYAR 377
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 18/248 (7%)
Query: 20 FSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQT---- 72
FS P L +++ + S+ SL Y NF +T+ + KP +
Sbjct: 39 FSAAGPIL--SVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGKPVRIMWCH 96
Query: 73 QKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
+ ++RR ++V +L S E+ +LFA GT++ +++ + G + FV +
Sbjct: 97 RDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILSCKVVSDENGP-KGHGFVHFET 155
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
E A A+ + + V R + F +FK+P + E +YV N +
Sbjct: 156 REAADKAIKEMNGSLVKERKV---FVGQFKRPNQREEERRAKMEQFTNVYVKNFADGTTD 212
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+L E FS + P+SS + + G+S G+GF+ F +A+ AI ++GK+ GR + +
Sbjct: 213 EYLLEIFS-QYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYV 271
Query: 249 KFGQKNDD 256
QK +
Sbjct: 272 SRAQKKKE 279
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+ G ++ V + + ++ + +V PE+A A+N
Sbjct: 21 LYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTM 80
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ + + P +RS ++V++L + + L + F+
Sbjct: 81 NFDVLHGKPVRIMWCH--RDPSLRRSGVG-------NVFVNHLDASIDNKELYDLFAGFG 131
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+S KVV S+E G+GFV F T+E A+ AI ++G
Sbjct: 132 TILSCKVV--SDENGPKGHGFVHFETREAADKAIKEMNG 168
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L +V L E FSA +S +V ++ RS GYG+V+F E+A A++++
Sbjct: 21 LYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTM 80
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ + ++ + S
Sbjct: 81 NFDVLHGKPVRIMWCHRDPSLRRSG 105
>gi|325089595|gb|EGC42905.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces capsulatus H88]
Length = 492
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LY+ L + ++ +F G V V+II K K N+ FV P A+ A++
Sbjct: 91 KRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMS 150
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + V IRV +A + + +++ ++V +LS +V L + FSA
Sbjct: 151 TLNGRRVHQSEIRVNWAYQSNNNNKEDTSN------HFHIFVGDLSNEVNDEVLLQAFSA 204
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 205 -FGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQKGQ 263
Query: 257 VSESNKE 263
S S ++
Sbjct: 264 PSISQQQ 270
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ L +V LR+ F + S K++ + N + YGFV + AE A+S+L
Sbjct: 94 LYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNS-KGLNYGFVEYDDPGAAERAMSTL 152
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNKEEEDVS 268
+G+ + +R+ + +++ N +ED S
Sbjct: 153 NGRRVHQSEIRVNWAYQSN-----NNNKEDTS 179
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL + + ++KN+F GT+ +++ GK++ F FV P+ A AV +
Sbjct: 209 VYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALN 268
Query: 141 TQE------VSGRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++ GR + E KF++ R +R + LY+ NL V
Sbjct: 269 GKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIE----KYQGVNLYLKNLDDTVDDE 324
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F A++ ++S V +G+S G GFV+F++ EEA A++ ++GK + +PL +
Sbjct: 325 KLRELF-ADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVA 383
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 384 LAQRKEE 390
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + S A++ LF G VV + + + ++ +A+V S ++A A+
Sbjct: 30 LYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELL 89
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G IR+ F+ + P ++S +A +++ NL + + L + FSA
Sbjct: 90 NFSVLNGNPIRIMFSHR--DPSIRKSGTA-------NIFIKNLDKTIDNKALHDTFSAFG 140
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + + G+S GYGFV F +E A AI ++G L
Sbjct: 141 GILSCKVAVDGS-GQSKGYGFVQFEQEESALTAIEKVNGMLL 181
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 61 QDTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116
++ + K EQ +K+ I + LY+ NL + +++ LFA GT+ ++++ G
Sbjct: 288 REAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQG 347
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--------RSASA 168
++R FV +SPEEA AV + + + V + + V A++ ++ R + R++ +
Sbjct: 348 QSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRKEERRARLQAAFAQMRTSVS 407
Query: 169 PARETQHKLY 178
PA T +Y
Sbjct: 408 PAVPTSLPMY 417
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E F+ VS +V + RS GY +V++ + ++A A+ L
Sbjct: 30 LYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELL 89
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G P+R+ F ++ + +S
Sbjct: 90 NFSVLNGNPIRIMFSHRDPSIRKSG 114
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 18/178 (10%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y NLP F+ ++ +FAP GT+ ++K G+++ F FV E A+ AV + +
Sbjct: 214 VYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLN 273
Query: 141 TQEVS------GRIIR-----VEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRS 188
+ +S GR R E +KF K R + R+++ LY+ NL +
Sbjct: 274 GKIISDVALYVGRAKRKQERQAELKEKFDKERNDK-----IRKSKGCNLYLKNLDCSIDD 328
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+LR F F+ + + V +EGRS G+GFV F T E A A+S + ++L+G L
Sbjct: 329 EYLRNLF-GRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKL 385
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 11/160 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
+YV NL S + ++ +LF+ VV V I K G++ +A+V S E+A+ A+ F
Sbjct: 33 VYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEYF 92
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V+G+ IRV F+ + P +RS +A L++ NL + + L + FS
Sbjct: 93 NFTVVNGKSIRVMFSN--RDPTLRRSGAA-------NLFIKNLEPNIVAKSLHQMFSRFG 143
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
+S KV + N G+S GYGFV F ++E A+ A+++L+GK
Sbjct: 144 IILSCKVATDLN-GKSKGYGFVQFVSEESAKDAMNALNGK 182
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + + +F+ G ++ ++ GK++ + FV S E A+ A+N +
Sbjct: 121 LFIKNLEPNIVAKSLHQMFSRFGIILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALN 180
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ +G ++ + F + ++ ++ T +Y NL + L F A F
Sbjct: 181 GKLANGNGKQL-YVDLFIRREERQHIGGASKFTN--VYTKNLPKEFTDDDLCRVF-APFG 236
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
++S VV + +G S +GFV++ E AE A+ L+GK
Sbjct: 237 TITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLNGK 275
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P P+ + +YV NL V L + FS VS ++ + GRS GY +V
Sbjct: 18 PPLYIPGPSFGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYV 77
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+F + E+A+ A+ + + G+ +R+ F ++ + S
Sbjct: 78 NFHSHEDAKVALEYFNFTVVNGKSIRVMFSNRDPTLRRSG 117
>gi|281203518|gb|EFA77718.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 341
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 14/184 (7%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASP 129
Q +QNI K++V ++P SF E+ +F G ++++ IIK K + AF++ ++
Sbjct: 5 QQPQQNIGFKVFVGHIPLSFKEEELSGIFEKFGNILNISIIKDKRTNVPKGCAFISFSTK 64
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EEA A+N ++ +F KP + + + + KL++ L T
Sbjct: 65 EEADLAINTVNSSN--------QFLGDVTKPLQVKYSDNEIEKMERKLFIGMLGSADEDT 116
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR---PL 246
F + + + EGR GYGF+ F+ +EEAE AI LDGK PL
Sbjct: 117 VTSVF--GKYGAIEELTIVREKEGRPKGYGFIKFSAREEAEDAIRELDGKHTFAGSSIPL 174
Query: 247 RLKF 250
+KF
Sbjct: 175 IVKF 178
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+++ LP ++ E+K LF G V+ ++ K +++ F FVT +P+ A A+N
Sbjct: 263 LFIYYLPQNYGDLELKMLFQTYGNVISAKVFIDKATNQSKCFGFVTYDNPQSALNAINDL 322
Query: 140 DTQEVSGRIIRVEFAKK 156
+ + G+ ++V F K+
Sbjct: 323 NGFAIEGKKLKVNFKKE 339
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 103/257 (40%), Gaps = 67/257 (26%)
Query: 60 LQDTT--VETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK 117
L D T ++ K + + + RKL++ + S + ++F G + ++ I++ K G+
Sbjct: 81 LGDVTKPLQVKYSDNEIEKMERKLFI-GMLGSADEDTVTSVFGKYGAIEELTIVREKEGR 139
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEV---SGRIIRVEFAKKFKKPR----------PQR 164
+ + F+ ++ EEA+ A+ + D + S + V+FA ++ R PQ
Sbjct: 140 PKGYGFIKFSAREEAEDAIRELDGKHTFAGSSIPLIVKFADTERQKRKKQLMNTQTQPQN 199
Query: 165 SASAPAR-------ETQHKLYVSNLS-------------WKVRSTH-------------- 190
+ + Q +Y N++ ++ RST+
Sbjct: 200 TWGGGGNNFYQQPNQQQFPMYYDNMNMHQHQVNNNPFQRYQPRSTNVYQMNQQYNEFQQE 259
Query: 191 -----------------LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233
L+ F N +S+KV + +S +GFV++ + A AI
Sbjct: 260 SSDLFIYYLPQNYGDLELKMLFQTYGNVISAKVFIDKATNQSKCFGFVTYDNPQSALNAI 319
Query: 234 SSLDGKELMGRPLRLKF 250
+ L+G + G+ L++ F
Sbjct: 320 NDLNGFAIEGKKLKVNF 336
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 164 RSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+S P + K++V ++ + L F N ++ ++ + G F+SF
Sbjct: 2 QSIQQPQQNIGFKVFVGHIPLSFKEEELSGIFEKFGNILNISIIKDKRTNVPKGCAFISF 61
Query: 224 ATKEEAEAAISSLD-GKELMG---RPLRLKF 250
+TKEEA+ AI++++ + +G +PL++K+
Sbjct: 62 STKEEADLAINTVNSSNQFLGDVTKPLQVKY 92
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E + ++ + L V LP + + E+K+LF G + ++++ K G++ + FV
Sbjct: 29 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 88
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
P++A+ A+N + + + I+V +A R +SA R+ LYVS L +
Sbjct: 89 PKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQ 137
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPL 246
L + FS ++S+++ + G S G GF+ F + EAE AI L+G++ G P+
Sbjct: 138 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 197
Query: 247 RLKF 250
+KF
Sbjct: 198 TVKF 201
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 46/236 (19%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I + G
Sbjct: 104 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 163
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFAKKFKKP-----------RPQR 164
+R F+ EA+ A+ + Q+ G I V+FA + P R
Sbjct: 164 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPNR 223
Query: 165 SASAPARETQHK-----------------------------LYVSNLSWKVRSTHLREFF 195
P + + ++V NL+ + L + F
Sbjct: 224 RYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMF 283
Query: 196 SANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F V++ KV+ + N + G+GFV+ +EA AI+SL+G L R L++ F
Sbjct: 284 GP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 338
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S+ +++ L V+ L + L+ F + S K+V + G+S GYGFV++
Sbjct: 30 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 89
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQ 252
++AE AI++L+G L + +++ + +
Sbjct: 90 KDAEKAINTLNGLRLQTKTIKVSYAR 115
>gi|452002199|gb|EMD94657.1| hypothetical protein COCHEDRAFT_1092247 [Cochliobolus
heterostrophus C5]
Length = 572
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTM 126
+PE T+ +R ++V + ++ F G VV+ +I+K + G+++ +V
Sbjct: 167 EPEITEDDRDKRTIFVQQISQRAETRHLRAFFERVGPVVEAQIVKDRVTGRSKGVGYVEF 226
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEF--AKKFKKPRPQRSASAPARETQ--HKLYVSNL 182
E A+ + Q++ G I + A+K + RP +AP H+LYV N+
Sbjct: 227 KDEESVPQAL-ELTGQKLKGVPIIAQLTEAEKNRAARPSEGGTAPGANGAPFHRLYVGNI 285
Query: 183 SWKVRSTHLREFFSANFNPVSSKVV--FESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240
+ V L+E F F + ++ E N GRS GYGFV F A+ A++ ++G E
Sbjct: 286 HFSVTEKDLQEIFEP-FGELEQVILQRDEMNPGRSKGYGFVQFVDPSHAKNALAEMNGFE 344
Query: 241 LMGRPLRLKFG 251
L GR +R+ G
Sbjct: 345 LAGRQIRVGLG 355
>gi|45384000|ref|NP_990596.1| nucleolin [Gallus gallus]
gi|128840|sp|P15771.1|NUCL_CHICK RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|63711|emb|CAA35060.1| unnamed protein product [Gallus gallus]
Length = 694
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 100/181 (55%), Gaps = 10/181 (5%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+ + E+KN+F ++V ++ +K G ++ A++ +
Sbjct: 362 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTE 418
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EA+ A+ + EV GR + +++ + + Q+ RE++ L V+NLS+
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE--RESKT-LIVNNLSYAASEE 475
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E F +S + ++N+GR GY FV F T E+A+ A++S + E+ GR +RL+
Sbjct: 476 TLQELFKK----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLE 531
Query: 250 F 250
F
Sbjct: 532 F 532
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 33/271 (12%)
Query: 5 EAAATSIFLTNHPF-----SFSCLFPKLPHCIKLLHSSNSTPSLSY-NFPTRNLCLQVCS 58
E A ++F+ N P+ +F +L+ S+ ++Y F T +
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 59 TLQDTTVETKP-----------EQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGT 104
Q T V+ + +++QK R+ L V NL ++ S ++ LF
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA-- 484
Query: 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
+++ ++ G+ + +AFV + E+A+ A+N + E+ GR IR+EF+ P Q+
Sbjct: 485 -TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSS----PSWQK 539
Query: 165 S---ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
A + L+V LS LRE F + +S+++V + + G S G+GFV
Sbjct: 540 GNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFV 596
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F++ E+A+AA +++ E+ G + L F +
Sbjct: 597 DFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 177 LYVSNLS----WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
L+V NL+ ++ T ++EFF VS E G S +G+V F + E+ + A
Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVS-----EVRIGSSKRFGYVDFLSAEDMDKA 337
Query: 233 ISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
+ L+GK+LMG ++L+ + + + E+ KE +
Sbjct: 338 LQ-LNGKKLMGLEIKLEKAKSKESLKENKKERD 369
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 102/203 (50%), Gaps = 21/203 (10%)
Query: 61 QDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRN 120
+D E + + ++ N+ Y+ N +K++F+ G + V+++ GK++
Sbjct: 176 KDREAELRSKASEFTNV----YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 231
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-----------FKKPRPQRSASAP 169
F FV+ S E A+ AV + + ++++G++I V A+K F++ + +R
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQ 291
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
KLYV NL + LR FS+ F + S+V EG+S G+G + F++ E+A
Sbjct: 292 V----VKLYVKNLDDTIDDEKLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDA 345
Query: 230 EAAISSLDGKELMGRPLRLKFGQ 252
A++ ++G+ L +PL + Q
Sbjct: 346 LKAMTEMNGRILGSKPLSIALAQ 368
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+ + +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 158
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
+ + G + F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 159 GKLLQGCKV---FVGRFK-SRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 215 KTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQK 267
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 72 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 123 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQG 164
>gi|317027210|ref|XP_003188595.1| nucleolin protein Nsr1 [Aspergillus niger CBS 513.88]
Length = 536
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ A +++ F G + V I+ + G++R F +V + +A A
Sbjct: 287 LFVGNLSWNVDEAWLQSEFESFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 346
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS-----ASAPARE-------TQHKLYVSNLSWKVR 187
E+ GR+I +++A + Q+ A+A AR L+V NL +
Sbjct: 347 KGAEIDGRVINLDYATGRPANKDQQGGFKDRANARARSFGDQASPESDTLFVGNLPFDAN 406
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ E F + + ++ + + GR G+G+V +++ +EA AA + L G +L+GRP+R
Sbjct: 407 EDSVGELFGEKGSILGIRLPTDPDSGRPKGFGYVQYSSVDEARAAFNELQGADLLGRPVR 466
Query: 248 LKF 250
L F
Sbjct: 467 LDF 469
>gi|317027208|ref|XP_001400395.2| nucleolin protein Nsr1 [Aspergillus niger CBS 513.88]
Length = 539
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ A +++ F G + V I+ + G++R F +V + +A A
Sbjct: 290 LFVGNLSWNVDEAWLQSEFESFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 349
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS-----ASAPARE-------TQHKLYVSNLSWKVR 187
E+ GR+I +++A + Q+ A+A AR L+V NL +
Sbjct: 350 KGAEIDGRVINLDYATGRPANKDQQGGFKDRANARARSFGDQASPESDTLFVGNLPFDAN 409
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ E F + + ++ + + GR G+G+V +++ +EA AA + L G +L+GRP+R
Sbjct: 410 EDSVGELFGEKGSILGIRLPTDPDSGRPKGFGYVQYSSVDEARAAFNELQGADLLGRPVR 469
Query: 248 LKF 250
L F
Sbjct: 470 LDF 472
>gi|327299776|ref|XP_003234581.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
gi|326463475|gb|EGD88928.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
Length = 507
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G V V+II K K N+ F+ P A+ A
Sbjct: 101 KRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGAAERA 160
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + V IRV +A + +AS + ++V +LS +V L + F
Sbjct: 161 MQTLNGRRVHQSEIRVNWAYQ------SNTASKEDTSSHFHIFVGDLSNEVNDEVLLQAF 214
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
SA + ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 215 SACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKG 274
Query: 256 DVSESNKE 263
S S ++
Sbjct: 275 QPSISQQQ 282
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Query: 63 TTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFA 122
T ++ T + LY+ NL + IK F+ G V+ V+I+K G ++ F
Sbjct: 200 TFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFG 259
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--------RSASAPARETQ 174
FV+ +PE A+ A + + + + V A+K K R Q + +
Sbjct: 260 FVSFQNPESAKRAKESMNGMLLGSKTLYVARAQK-KAERKQYLQCLHEEKRNEIITKSNG 318
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
+Y+ N++ +V LRE F+ F ++S + +G S G+GFV + T EEA+ A+S
Sbjct: 319 SNVYIKNINDEVGDDALRERFN-EFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVS 377
Query: 235 SLDGKELMGRPLRLKFGQKNDD 256
++ G G+PL + Q+ ++
Sbjct: 378 NMRGVMFYGKPLYVAIAQRKEE 399
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L S + +F GT+ V + + N + +V S +A A+ +
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IRV ++ + P +RS ++V NL+ V + L+E F F
Sbjct: 100 NHSLILDKPIRVMWSNR--DPDARRSGVG-------NVFVKNLNDLVDNVSLQELF-CKF 149
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+ S V ++ +G S GYGFV FA +E A+A+I +L+ GR L + K + S
Sbjct: 150 GDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERST 209
Query: 260 SNKEE 264
+N ++
Sbjct: 210 NNDDK 214
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
+A+ PA LYV +L VR HL E F S +V ++ S YG+V++
Sbjct: 34 NATVPA------LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYL 87
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++ +A A+ L+ ++ +P+R+ + ++ D S
Sbjct: 88 SQADAAIALEKLNHSLILDKPIRVMWSNRDPDARRS 123
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEA 132
++N +Y+ NL + + LF CG VV+V I K K G+++ + FV S E+A
Sbjct: 14 ERNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDA 73
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
A+ ++ G+ I+V A + K+ +E L++ NL ++ L
Sbjct: 74 DYAIKIMHMIKLYGKPIKVNKASQDKR----------TQEVGANLFIGNLDTEIDEKTLY 123
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E FSA + +S+K++ G S GYGFVS+ E ++ A+++++G+ L + +R+++
Sbjct: 124 ETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAF 183
Query: 253 KNDDVSE 259
K D E
Sbjct: 184 KKDAKGE 190
>gi|453088735|gb|EMF16775.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 761
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 36/234 (15%)
Query: 64 TVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPC------GTVVDVEIIKHKGGK 117
++E + + TQK R L+V +LP S + ++ LF+ V+D E KG
Sbjct: 40 SIEQQKQATQK---RCSLFVRSLPASTTNDQLTELFSDAFPVKHATAVIDPETKLCKG-- 94
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRS-ASAPARET--- 173
+ FVT A E+A A QF+ E+ G+ +R+E A+ PR + S A +E+
Sbjct: 95 ---YGFVTFADAEDAAQAKAQFNGHELGGKKLRIEVAE----PRSRDSKAKDEGKESVGQ 147
Query: 174 ----------QH---KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGF 220
QH KL V NL W ++ E ++ + V + G AG+GF
Sbjct: 148 LKRKEAEVERQHQPSKLIVRNLPWSIKGPKQLEKLFQSYGKIKKAYVPQKGPGLMAGFGF 207
Query: 221 VSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAE 274
V ++ AE AI ++GKE+ GR L + + + DV E N + ++ +E + AE
Sbjct: 208 VIMRGRKNAEKAIEGVNGKEINGRTLAVDWAVEK-DVFEENADADEGNEAEDAE 260
>gi|452989554|gb|EME89309.1| hypothetical protein MYCFIDRAFT_149907 [Pseudocercospora fijiensis
CIRAD86]
Length = 500
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 65 VETKPEQTQKQ------NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGK 117
+ +PEQ+ K+ N+ L++ NL W+ + F G + V II + G+
Sbjct: 225 ADEEPEQSPKKAKTEDPNVTGNLFIGNLSWNVDEEWLTREFEEFGELKGVRIITDRDSGR 284
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-------- 169
++ F +V + E+A A+ + E+ R IR++F+ PR Q +A P
Sbjct: 285 SKGFGYVEFENAEDAAKALEAKNGAELDNRAIRLDFSV----PR-QNNAQNPQQRGQERR 339
Query: 170 ------ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
A E L+V NLS+ +RE+F + + ++ + G G+G+V
Sbjct: 340 QQYGDKASEPSQTLFVGNLSFDATEDMVREYFEEHGSINGIRLPTDRESGAPKGFGYVEM 399
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
+ +EA+AA +L G +L GRP+RL +
Sbjct: 400 GSIDEAKAAYEALQGADLGGRPMRLDY 426
>gi|116200107|ref|XP_001225865.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
gi|88179488|gb|EAQ86956.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 7/192 (3%)
Query: 63 TTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNF 121
T +T P T + RR ++V L E+K F G V + +I+K + +++
Sbjct: 169 TPRDTSP--TGDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGV 226
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPRPQRSASAPARETQHKLYV 179
+V EE+ AA Q Q++ G I++ A+K ++ R S+ P H+LYV
Sbjct: 227 GYVEFKG-EESVAAALQLTGQKLLGIPVIVQPTEAEKNRQVRNSESSGHPNSVPFHRLYV 285
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
N+ + + T L+ F F + + + + GRS GYGFV F +A A+ ++G
Sbjct: 286 GNIHFSITETDLQNVFEP-FGELEFVQLQKDDSGRSRGYGFVQFRDAGQAREALEKMNGF 344
Query: 240 ELMGRPLRLKFG 251
+L GRP+R+ G
Sbjct: 345 DLAGRPIRVGLG 356
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL + + E+K F G++ +++ GK+R F FV +PE+A AV
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 137 -NQFDTQE-VSGRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+FD +E G+ + +E +++++ Q S+ + LYV NL V
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYE----QGSSDGGNKFDGLNLYVKNLDDTVTDE 342
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F A F ++S V G S G GFV+F+ EA ++ ++GK + G+PL +
Sbjct: 343 KLRELF-AEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVA 401
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 402 LAQRKEE 408
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F VV V + + + + +V ++ ++A+ A+ +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G++IR+ ++ S+ R L+V NL V + L E FS
Sbjct: 108 NYSYLNGKMIRITYSS---------RDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCG 158
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
VS KV + + G+S GYGFV F T++ A+ AI L+GK L
Sbjct: 159 TIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVL 199
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + V + L ++F+ VS +V ++ S GYG+V+++ ++AE A+ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 237 DGKELMGRPLRLKF 250
+ L G+ +R+ +
Sbjct: 108 NYSYLNGKMIRITY 121
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + + +++ LFA GT+ ++++ G ++ FV ++ EA +N+ +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSA 166
+ V G+ + V A++ ++ R + A
Sbjct: 390 GKMVGGKPLYVALAQRKEERRAKLQA 415
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL + E+K F G++ +++ GK+R F FV +PE+A AV
Sbjct: 222 VYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 281
Query: 137 -NQFDTQE-VSGRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+FD +E G+ + +E +++++ Q S+ A + LYV NL V
Sbjct: 282 GKKFDDKEWYVGKAQKKSERELELSRRYE----QGSSDAGNKFDGLNLYVKNLDDTVTDE 337
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F A F ++S V G S G GFV+F+ EA ++ ++GK + G+PL +
Sbjct: 338 KLRELF-AEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVA 396
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 397 LAQRKEE 403
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F VV V + + + + +V ++ E+A+ A+ +
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKL 102
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G++IR+ ++ S+ R L+V NL V + L E FS
Sbjct: 103 NYSTLNGKMIRITYSS---------RDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCG 153
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
VS KV + + G+S GYGFV F T++ A+ AI L+GK L
Sbjct: 154 TIVSCKVAAD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVL 194
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + V + L ++F+ VS +V ++ S GYG+V+++ E+AE A+ L
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKL 102
Query: 237 DGKELMGRPLRLKF 250
+ L G+ +R+ +
Sbjct: 103 NYSTLNGKMIRITY 116
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + + +++ LFA GT+ ++++ G ++ FV ++ EA +N+ +
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 384
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSA 166
+ V G+ + V A++ ++ R + A
Sbjct: 385 GKMVGGKPLYVALAQRKEERRAKLQA 410
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL + + E+K F G++ +++ GK+R F FV +PE+A AV
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 137 -NQFDTQE-VSGRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+FD +E G+ + +E +++++ Q S+ + LYV NL V
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYE----QGSSDGGNKFDGLNLYVKNLDDTVTDE 342
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F A F ++S V G S G GFV+F+ EA ++ ++GK + G+PL +
Sbjct: 343 KLRELF-AEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVA 401
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 402 LAQRKEE 408
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F VV V + + + + +V ++ ++A+ A+ +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G++IR+ ++ S+ R L+V NL V + L E FS
Sbjct: 108 NYSYLNGKMIRITYSS---------RDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCG 158
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
VS KV + + G+S GYGFV F T++ A+ AI L+GK L
Sbjct: 159 TIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVL 199
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + V + L ++F+ VS +V ++ S GYG+V+++ ++AE A+ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 237 DGKELMGRPLRLKF 250
+ L G+ +R+ +
Sbjct: 108 NYSYLNGKMIRITY 121
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + + +++ LFA GT+ ++++ G ++ FV ++ EA +N+ +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSA 166
+ V G+ + V A++ ++ R + A
Sbjct: 390 GKMVGGKPLYVALAQRKEERRAKLQA 415
>gi|134057335|emb|CAK44534.1| unnamed protein product [Aspergillus niger]
Length = 538
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ A +++ F G + V I+ + G++R F +V + +A A
Sbjct: 289 LFVGNLSWNVDEAWLQSEFESFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 348
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS-----ASAPARE-------TQHKLYVSNLSWKVR 187
E+ GR+I +++A + Q+ A+A AR L+V NL +
Sbjct: 349 KGAEIDGRVINLDYATGRPANKDQQGGFKDRANARARSFGDQASPESDTLFVGNLPFDAN 408
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ E F + + ++ + + GR G+G+V +++ +EA AA + L G +L+GRP+R
Sbjct: 409 EDSVGELFGEKGSILGIRLPTDPDSGRPKGFGYVQYSSVDEARAAFNELQGADLLGRPVR 468
Query: 248 LKF 250
L F
Sbjct: 469 LDF 471
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L WS ++ F P G V+ +I + GK+R + +V S A+ A+ ++
Sbjct: 200 LFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDSKSAAEKALQEY 259
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ---------HKLYVSNLSWKVRSTH 190
+E+ GR I ++ + +P S R Q L+V NLS+
Sbjct: 260 QGKELDGRPINLDMSTG----KPHASNPNTDRAKQFGDVPSAPSDTLFVGNLSFNAERDS 315
Query: 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
L F VS ++ + + G+G+V F++ +EA+AA+ +L+G+ L GR RL F
Sbjct: 316 LFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLDGRACRLDF 375
Query: 251 GQKNDD 256
D+
Sbjct: 376 STPRDN 381
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V V+II K + N+ FV P A+ A+
Sbjct: 92 KRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNHRGYNYGFVEYDDPGAAERAMQ 151
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + V IRV +A + +A+ ++V +LS +V L + FSA
Sbjct: 152 TLNGRRVHQNEIRVNWAYQ------SNNANKEDTSNHFHIFVGDLSNEVNDEVLWQAFSA 205
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F +S ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 206 -FGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNW 258
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + S K++ + N R YGFV
Sbjct: 84 RRAAPEPNKRA---LYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNH-RGYNYGFVE 139
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
+ AE A+ +L+G+ + +R+ + ++++ +NKE+
Sbjct: 140 YDDPGAAERAMQTLNGRRVHQNEIRVNWAYQSNN---ANKED 178
>gi|398410055|ref|XP_003856481.1| hypothetical protein MYCGRDRAFT_31414 [Zymoseptoria tritici IPO323]
gi|339476366|gb|EGP91457.1| hypothetical protein MYCGRDRAFT_31414 [Zymoseptoria tritici IPO323]
Length = 740
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAV 136
RR L+V LP + + + LF+ V + K R + FVT A E+A A
Sbjct: 55 RRSLFVRQLPSNTTSESLTELFSETFPVKHATAVTDPATKECRGYGFVTFADAEDAAQAK 114
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA---RETQH-------------KLYVS 180
+QF + G+ +RVE A+ PR +R A A ++ +H KL V
Sbjct: 115 SQFHGHIIDGKKLRVEIAE----PR-KRVADADGEMPKKVEHNASKKPDEPVQPTKLIVR 169
Query: 181 NLSWKV-RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NL W + R L + F +F V + + G AG+GFV K+ AE AI ++GK
Sbjct: 170 NLPWSIKRGDQLEKLF-LSFGKVKKAYIPKKGPGLMAGFGFVLMRGKKNAEKAIEGVNGK 228
Query: 240 ELMGRPLRLKFGQKND---DVSESNKEEEDVSEDQ 271
E+ GR L + + + D D+ + K EE+VS ++
Sbjct: 229 EIDGRTLAVDWAVEKDTYEDLVKGEKAEEEVSNEE 263
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 165 SASAPARETQ------HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGY 218
+ APA E + L+V L S L E FS F + V + GY
Sbjct: 40 AVDAPADEKEAAVQQRRSLFVRQLPSNTTSESLTELFSETFPVKHATAVTDPATKECRGY 99
Query: 219 GFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 263
GFV+FA E+A A S G + G+ LR++ + V++++ E
Sbjct: 100 GFVTFADAEDAAQAKSQFHGHIIDGKKLRVEIAEPRKRVADADGE 144
>gi|326480772|gb|EGE04782.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton equinum CBS 127.97]
Length = 507
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G V V+II K K N+ F+ P A+ A
Sbjct: 101 KRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGAAERA 160
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + V IRV +A + +AS + ++V +LS +V L + F
Sbjct: 161 MQTLNGRRVHQSEIRVNWAYQ------SNTASKEDTSSHFHIFVGDLSNEVNDEVLLQAF 214
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
SA + ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 215 SACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKG 274
Query: 256 DVSESNKE 263
S S ++
Sbjct: 275 QPSISQQQ 282
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 65 VETKPEQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF 121
+ K Q + + IR K +YV NL S + + K +F+ G + + + GK++ F
Sbjct: 203 IPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGF 262
Query: 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQ 174
F+ + E+A AV+ + E +G+ + V A+K +K Q A+
Sbjct: 263 GFINFENYEDAHKAVDTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQG 322
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
LY+ NL + LR+ FS + ++S V +G S G+GFV F++ +EA A++
Sbjct: 323 VNLYIKNLDDDIDDEKLRQEFSV-YGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVT 381
Query: 235 SLDGKELMGRPLRLKFGQKND 255
++G+ + +P+ + Q+ +
Sbjct: 382 EMNGRMIGSKPIYVALAQRKE 402
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +I + G ++ + FV + E A A+ D
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVD 188
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPA-RETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V PR +R A R +YV NL + +E FS F
Sbjct: 189 GMLLNDKKVYV----GRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFS-KF 243
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
P++S +V EG+S G+GF++F E+A A+ +L+ E G+ L + QK +
Sbjct: 244 GPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYVARAQK-----K 298
Query: 260 SNKEEE 265
+ +EEE
Sbjct: 299 TEREEE 304
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NL +++ F+ G + +++ + G ++ F FV +SP+EA AV + +
Sbjct: 325 LYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMN 384
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ + + I V A++ + R Q A R
Sbjct: 385 GRMIGSKPIYVALAQRKEVRRSQLEAQMAQR 415
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L V L E F+ PV+S +V ++ RS GY +V+F + E A+ S
Sbjct: 41 LYVGELDPSVTEAMLFEMFNM-IGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALES 99
Query: 236 LDGKELMGRPLRLKFGQKN 254
L+ + G+P R+ + Q++
Sbjct: 100 LNYTLIKGKPCRIMWSQRD 118
>gi|448520030|ref|XP_003868205.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis Co 90-125]
gi|380352544|emb|CCG22770.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis]
Length = 498
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
++ L W+ +K F V+ +I + GK+R + +V +S A+ A+ +
Sbjct: 257 IFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRGYGYVDFSSKSAAENAIAEM 316
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE-------TQHKLYVSNLSWKVRSTHLR 192
+E+ GR I ++ + KP +S + AR+ L++ NLS+ L
Sbjct: 317 QGKEIDGRPINLDLSTG--KPHATKSNNDRARQFGDQQSPPSDTLFIGNLSFNANRDKLF 374
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E F N +S ++ + + G+G+V F++ +EA+AA+ +L+G+ L GRP RL F
Sbjct: 375 EVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLEGRPCRLDFSA 434
Query: 253 KND 255
D
Sbjct: 435 PRD 437
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
++ LSW + L+ F +S++V+ E G+S GYG+V F++K AE AI+ +
Sbjct: 257 IFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRGYGYVDFSSKSAAENAIAEM 316
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNKE 263
GKE+ GRP+ L ++SN +
Sbjct: 317 QGKEIDGRPINLDLSTGKPHATKSNND 343
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 10/184 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + ++ F+ G +V V I + + G +R F FV +P++A+ A+ + +
Sbjct: 194 LYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMN 253
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQ------HKLYVSNLSWKVRSTHLR 192
E+ +++ V A+K + R Q R R+ Q +YV N+ V LR
Sbjct: 254 GTELGSKVLYVGRAQK-RAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELR 312
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E FS ++S + + ++GRS G+GFV F++ EEA A+++ G +PL + Q
Sbjct: 313 EHFS-QCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQ 371
Query: 253 KNDD 256
+ ++
Sbjct: 372 RKEE 375
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 8/181 (4%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
++N +YV NL S ++ LF GTV+ ++ + GK++ FV S + A
Sbjct: 96 RRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSAN 155
Query: 134 AAVNQFDTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
+A+ + + V + I V +F KK + P S A+ T LYV NL + L+
Sbjct: 156 SAIEKLNGSIVGDKQIYVGKFVKKSDRVLP----SPDAKYTN--LYVKNLDPGITEELLQ 209
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
E FS F + S + G S G+GFV+F ++A A+ ++G EL + L + Q
Sbjct: 210 EKFS-EFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQ 268
Query: 253 K 253
K
Sbjct: 269 K 269
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E+ +K+ I + +YV N+ + E++ F+ CGT+ +++K G+++ F FV
Sbjct: 282 EEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVC 341
Query: 126 MASPEEAQAAVNQF 139
+S EEA AVN F
Sbjct: 342 FSSSEEASKAVNTF 355
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L V L + FS FN ++S +V +S+ GRS YG+V+F + E+A AI +
Sbjct: 15 LYVGELHCDVSDGQLVDAFS-EFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAIET 73
Query: 236 LDGKELMGRPLRLKFGQKNDD 256
+ L G+ +R+ + ++ D
Sbjct: 74 KNHTPLNGKLMRVMWSHRDPD 94
>gi|313226301|emb|CBY21445.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 70 EQTQKQNI-RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
EQ + I +R LYV NL + + +K LFA G VVD+++I ++ F+T +
Sbjct: 37 EQAKDDEIFKRTLYVGNLHKNATENVLKALFAVIGNVVDIKMINDAALSTSHYCFITYET 96
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
AQ A+ + ++V ++V +A RP +++ H ++V +L+ ++ +
Sbjct: 97 HVGAQRALAAMNGRDVYKMPLKVNWAT-----RPDGIKKDTSKD--HHIFVGDLAQELTT 149
Query: 189 THLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L+ F F +S ++VV ++ RS GYGFV+F KE AE AI+ ++ K + GR +R
Sbjct: 150 LDLQNEFE-KFGKISEARVVRDAQTNRSKGYGFVAFLKKESAEMAITEMNNKSICGREVR 208
Query: 248 LKF 250
+
Sbjct: 209 TNW 211
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIK-HKGGKNRNFAFVTMASPEEAQAAVNQ 138
KLYV NLP ++ +LF P G V V++++ H G ++ + FV + P+ A A+ Q
Sbjct: 320 KLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQ 379
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL---------YVSNLSWKVRST 189
+ + G+ + V A ++ ET H+L YV NL + +
Sbjct: 380 LNGHLIEGKKMEVRVAAV--SSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTD 437
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L F S+KV + G S GYGFV F+ +A A+ L+G + GR + ++
Sbjct: 438 KLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVR 497
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 10/201 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E K+ L+V NLP S + ++ LF P G +V ++ G ++ + FV +
Sbjct: 220 EGKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSD 279
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
P A A+ + + V GR++ V A S+ + KLYV NL +
Sbjct: 280 PRYAAEAIKHMNGRMVEGRMLEVRLAGA-------PSSGSTKEMDMSKLYVCNLPLLLHE 332
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L + F S KV+ + G S GYGFV ++ + A AI L+G + G+ + +
Sbjct: 333 DKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEV 392
Query: 249 KFGQKNDDVSESNKEEEDVSE 269
+ + S SN + +SE
Sbjct: 393 RVAAVSS--SGSNTSVQAISE 411
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 13/202 (6%)
Query: 56 VCSTLQDTTVETKPE---QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-I 111
V S+ +T+V+ E Q K+ +YV NLP + ++ NLF P G V ++ +
Sbjct: 397 VSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAM 456
Query: 112 KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ G ++ + FV + P +A AV + + V GR I V + + P + A R
Sbjct: 457 DYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILV----RVRPPSSPVESHANNR 512
Query: 172 ETQH----KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+ LYV N+ + L E F F ++ +V E + S GYGFV FA
Sbjct: 513 TLKEIDMSNLYVCNIPSSMNKAKLVELF-LPFGRITHAMVVEQSNNSSKGYGFVKFADSH 571
Query: 228 EAEAAISSLDGKELMGRPLRLK 249
A A++ ++G + G + ++
Sbjct: 572 CAAEAVAMMNGALIEGETISVR 593
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 15/186 (8%)
Query: 71 QTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPE 130
+T K+ LYV N+P S + A++ LF P G + +++ ++ + FV A
Sbjct: 512 RTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSH 571
Query: 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLS 183
A AV + + G I V A S +P E +LYV+NL
Sbjct: 572 CAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLP 631
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+ + L F F + V++ A Y FV +A A A+ +DG + G
Sbjct: 632 QTMSADKLVSLFMP-FGQIDRVVMY-------AEYSFVLYADINSAAKALKHMDGYLIEG 683
Query: 244 RPLRLK 249
+ L +K
Sbjct: 684 KRLVVK 689
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 15/177 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +P + + ++ +F G +V + + + + A+ A AA++ D
Sbjct: 719 LYVGRVPSAVTCEQLVQIFCLYGEIVQAKKF------DAGYGMIRYANASSAAAAIDHLD 772
Query: 141 TQEVSGRIIRVEFAK--------KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLR 192
++ G + V A F + PQ + + LYV L V + L
Sbjct: 773 GYQIGGSTLVVRVAGLPAESDVATFAR-TPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLI 831
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
E F +KVV + G S G+GFV FA A AI+ ++G L G L ++
Sbjct: 832 ELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVR 888
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 44 SYNFPTRNLCLQVCSTLQDTTVET------KPEQTQKQNIRRKLYVFNLPWSFSVAEIKN 97
Y L ++V ++ V T P +Q LYV LP + ++
Sbjct: 773 GYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIE 832
Query: 98 LFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
LF PCG + +++ K G ++ F FV A A A+ + + G ++ V A
Sbjct: 833 LFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTA 890
>gi|452845447|gb|EME47380.1| hypothetical protein DOTSEDRAFT_69347 [Dothistroma septosporum
NZE10]
Length = 607
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 KP-EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVT 125
KP E T + RR ++V L E+K F G VVD +I+K + G+++ +V
Sbjct: 209 KPAEPTDDERDRRTVFVQQLAARLRSRELKEFFEQAGPVVDAQIVKDRVSGRSKGVGYVE 268
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ----HKLYVSN 181
E Q A+ Q++ G I + + +K R R+ A ++ H+LYV N
Sbjct: 269 FKEEESVQKAI-ALTGQKLLGIPIIAQLTEA-EKNRQARNTEGTATQSNGIPFHRLYVGN 326
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ + + L+ F F + + + GRS GYGFV F +A+ A+ ++G EL
Sbjct: 327 IHFSITEDDLKNVFEP-FGELEFVQLQKEEAGRSKGYGFVQFIDPTQAKEALEKMNGFEL 385
Query: 242 MGRPLRLKFG 251
GRP+R+ G
Sbjct: 386 AGRPIRVGLG 395
>gi|367026720|ref|XP_003662644.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
gi|347009913|gb|AEO57399.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
Length = 500
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V V+II K K N+ FV P A+ A+
Sbjct: 89 KRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNAKGYNYGFVEYDDPGAAERAMQ 148
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFS 196
+ + V IRV +A Q + S + H ++V +LS +V L + FS
Sbjct: 149 TLNGRRVHQSEIRVNWAY-------QSNNSNKEDTSNHFHIFVGDLSNEVNDEVLFQAFS 201
Query: 197 ANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
A F +S ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 202 A-FGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNW 255
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 43/209 (20%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G++ + ++ K G++R + FV +A+ A++ D + + R IR +A +
Sbjct: 200 FSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQK 259
Query: 158 KKPR-----------------------PQRSASA--------PARETQHKLYVSNLSWKV 186
+P P + PA +T YV NL+
Sbjct: 260 GQPSIAQQQAMQQMGMTPTTPYGHHHFPTHGVHSYDMVVNQTPAWQT--TCYVGNLTPYT 317
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
T + F NF V ES G+ F+ T E A AI L+G + GRPL
Sbjct: 318 TQTDIVPLFQ-NFG-----FVVESRFQADRGFAFIKMDTHENAAMAICQLNGYNVNGRPL 371
Query: 247 RLKFGQKNDDVSESNKEEEDVSEDQSAES 275
+ +G+ D + ++ ++ D + S +S
Sbjct: 372 KCSWGK---DKTPNHHQQFDPHQPYSPQS 397
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + S K++ + N + YGFV
Sbjct: 81 RRAAPEPNKRA---LYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNA-KGYNYGFVE 136
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
+ AE A+ +L+G+ + +R+ + ++++ SNKE+
Sbjct: 137 YDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNN---SNKED 175
>gi|70983602|ref|XP_747328.1| nucleic acid-binding protein [Aspergillus fumigatus Af293]
gi|66844954|gb|EAL85290.1| nucleic acid-binding protein [Aspergillus fumigatus Af293]
gi|159123666|gb|EDP48785.1| nucleic acid-binding protein [Aspergillus fumigatus A1163]
Length = 324
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 10/190 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
R+ +YV NL + + ++KN G V V++I G +R FA+V S E A++ V
Sbjct: 143 RQTVYVGNLFYDVTAEDLKNHMQQFGVVERVDLITDNRGLSRGFAYVHFDSIEAAKSCVE 202
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
Q GR I ++A + P R LY+ NLS+++ L E F
Sbjct: 203 AMHLQIFEGRRITAQYASS--------GGTRPLRPASRTLYLGNLSFEMTDRDLNELFRD 254
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN--D 255
N + +V + G+ G+ F E A+ A L GK GR +R+ + N
Sbjct: 255 INNVIDVRVSVDRRTGQPRGFAHAEFLDVESAQKAFEILSGKAPYGRRIRVDYSSTNRRG 314
Query: 256 DVSESNKEEE 265
D E +EE
Sbjct: 315 DRIEGVPDEE 324
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 70 EQTQKQNIRR--KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
E+ Q RR +Y+ N +++ +F G + +++ + GK + F FV+
Sbjct: 163 EKQLGQKARRFMNVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFE 222
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK----------- 176
PE A+ AVN + +E++G+++ V A+K + +R+A R Q K
Sbjct: 223 DPENAEKAVNDLNNKELNGKVLYVGRAQK----KSERAAELKRRFEQLKMDRINRYQGVN 278
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
LYV NL + LR+ F+ S+KV+ +SN GRS G+GFV F+ EEA
Sbjct: 279 LYVKNLDDSIDDERLRKEFTPFGTITSAKVMTDSN-GRSKGFGFVCFSAPEEA 330
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 6/174 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + ++ + FV + E A A+ + +
Sbjct: 83 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVN 142
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
++GR + F KF PR +R + + +Y+ N + LRE F +
Sbjct: 143 GMLLNGRKV---FVGKFV-PRSEREKQLGQKARRFMNVYIKNFGDDLDDEKLREMFE-KY 197
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++S V G+ G+GFVSF E AE A++ L+ KEL G+ L + QK
Sbjct: 198 GKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRAQK 251
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 11/149 (7%)
Query: 99 FAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G V+ + + + ++ +A+V P +A+ A++ + V GR IR+ +++
Sbjct: 13 FSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRPIRIMWSQ-- 70
Query: 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAG 217
+ P ++S +++ NL + + + + FSA N +S KV + E S G
Sbjct: 71 RDPSLRKSGVG-------NVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDE-ESNSKG 122
Query: 218 YGFVSFATKEEAEAAISSLDGKELMGRPL 246
YGFV F T+E A AI ++G L GR +
Sbjct: 123 YGFVHFETEEAANNAIQKVNGMLLNGRKV 151
>gi|344228217|gb|EGV60103.1| RNA-binding domain-containing protein [Candida tenuis ATCC 10573]
Length = 475
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 5/177 (2%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
+Q R LYV L S AE+ +F G++ ++I+ K N+AF+ P A
Sbjct: 44 RQVSNRILYVAGLDKSIDEAELSKVFGQYGSIKLIKILGDKNKLGFNYAFIEFQEPNSAS 103
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A++ + + ++ II +++A +SA E ++V +LS +V L +
Sbjct: 104 DALSGLNGKNINDHIIVIKWAYHSSNANSVQSA-----EPVFNVFVGDLSPEVDDVTLSK 158
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
FS + + V+++ RS GYGFV+F + +A+ AI+S++G+E++GR +R +
Sbjct: 159 AFSQFKSKREAHVMWDMQTSRSRGYGFVTFLDQLDAQMAINSMNGQEVLGRVIRCNW 215
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL S + A+++ +F G + +++ GK++ F FV A+ ++A AV +
Sbjct: 205 VFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALN 264
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+ G+ V A+K K Q + + LY+ NL V L E
Sbjct: 265 GKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELME 324
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS F ++S V G S G GFVSF+ E A A+ ++GK + G+PL + Q+
Sbjct: 325 LFS-EFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQR 383
Query: 254 NDD 256
+D
Sbjct: 384 KED 386
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 56 VCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG 115
+ L++ T++ LYV +L + ++ +LF VV V I +
Sbjct: 1 MAQVLENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVA 60
Query: 116 GKNR-NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ 174
+ + +V ++ +A A++ + ++G+IIR+ ++ + P ++S +A
Sbjct: 61 TQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYS--IRDPSARKSGAA------ 112
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
+++ NL + L + FSA N +S KV +++ G+S G+GFV F ++E A+ AI
Sbjct: 113 -NVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDAS-GQSKGHGFVQFESEESAQNAID 170
Query: 235 SLDG 238
L+G
Sbjct: 171 KLNG 174
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ K+ + + LY+ NL S E+ LF+ GT+ ++++ G +R FV+
Sbjct: 293 EQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVS 352
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPR----PQRSASAPARET 173
+ E A A+ + + + V+G+ + V A++ + R Q S S PA T
Sbjct: 353 FSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAAIT 404
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + F+ VS ++ + +S GYG+V+F+ +A AI L
Sbjct: 26 LYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVL 85
Query: 237 DGKELMGRPLRLKF 250
+ L G+ +R+ +
Sbjct: 86 NFTPLNGKIIRIMY 99
>gi|350629665|gb|EHA18038.1| hypothetical protein ASPNIDRAFT_176547 [Aspergillus niger ATCC
1015]
Length = 496
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G VV V+II K K N+ FV P A+ A
Sbjct: 90 KRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFNSKGYNYGFVEFDDPGAAERA 149
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + + IRV +A + S + ++V +LS +V L + F
Sbjct: 150 MQTLNGRRIHQSEIRVNWAYQ------SNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQAF 203
Query: 196 SANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
SA F VS ++V+++ GRS GYGFV+F + +A+ A+SS+DG+ L R +R + +
Sbjct: 204 SA-FGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQK 262
Query: 255 DDVSESNKE 263
S S ++
Sbjct: 263 GQPSISQQQ 271
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 36/184 (19%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G+V + ++ K G++R + FV +A A++ D + + R IR +A +
Sbjct: 203 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQK 262
Query: 158 KKPR-PQRSASAPARET----------------------------QHKLYVSNLSWKVRS 188
+P Q+ A A T Q YV NL+
Sbjct: 263 GQPSISQQQAMAAMGMTPTTAFGHHHFPTHGIQSYDMVVQQTPQWQTTCYVGNLTPYTTQ 322
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
T L F NF V E+ G+ F+ T E A AI L+G + GRPL+
Sbjct: 323 TDLVPLFQ-NFG-----YVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNVNGRPLKC 376
Query: 249 KFGQ 252
+G+
Sbjct: 377 SWGK 380
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A F + R+A P + LYV L +V L++ F +
Sbjct: 64 TSPMSGNMMSPTSAGGFVR----RAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGH 116
Query: 201 PVSSKVVFESN-EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
VS K++ + N + YGFV F AE A+ +L+G+ + +R+ + +++
Sbjct: 117 VVSVKIIPDKNFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSN---S 173
Query: 260 SNKEE 264
+NKE+
Sbjct: 174 TNKED 178
>gi|343427935|emb|CBQ71460.1| related to NSR1-nuclear localization sequence binding protein
[Sporisorium reilianum SRZ2]
Length = 459
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
+++V L W+ +K+ G V + + GK+R F +V A+ A+ A +
Sbjct: 208 QVWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFEE 267
Query: 139 FDTQEVSGRIIRVEF-----------AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVR 187
+EV GR IR++ AKKF R SAP+ L++ NLS+ +
Sbjct: 268 GQGKEVDGRAIRLDLSTPKGDVTENRAKKFNDQR-----SAPS----STLFIGNLSFDIS 318
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ FS + ++ + + GR G+G+V FA +E A+AA+ ++ G+EL GRPLR
Sbjct: 319 EDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAALDAMTGQELAGRPLR 378
Query: 248 LKF 250
L F
Sbjct: 379 LDF 381
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++++V LSW V + L+ S++V + G+S G+G+V FAT A+ A
Sbjct: 207 NQVWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFE 266
Query: 235 SLDGKELMGRPLRLKFGQKNDDVSES 260
GKE+ GR +RL DV+E+
Sbjct: 267 EGQGKEVDGRAIRLDLSTPKGDVTEN 292
>gi|326472099|gb|EGD96108.1| RNA binding domain-containing protein [Trichophyton tonsurans CBS
112818]
Length = 293
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 10/185 (5%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++PE K + YV N+ + + A++K + G V+ II G +R F +V
Sbjct: 74 SRPEPQPKATV----YVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRF 129
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWK 185
S EEA+ A+++ E GR + V FA+ + +PQR E ++V N++ +
Sbjct: 130 ESVEEAKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKM-----EPTRTIFVGNIAHQ 184
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V L F N +V + G G+ F E A A L G+ GRP
Sbjct: 185 VTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKGQAPYGRP 244
Query: 246 LRLKF 250
LRL +
Sbjct: 245 LRLDY 249
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 147 RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
R +R F +P PQ A+ +YV N+ + + + L+E+ S + +++
Sbjct: 63 RPVRNSFGLPPSRPEPQPKAT---------VYVGNILFDITAADLKEYASKYGKVLGTRI 113
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+++S G S G+G+V F + EEA+ AI + E GR L + F Q
Sbjct: 114 IYDSR-GLSRGFGYVRFESVEEAKKAIDEMHLSEYEGRKLSVNFAQ 158
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 65 VETKPEQTQ-KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFA 122
V+ + EQ Q K R ++V N+ + ++ LF V DV + + + G R FA
Sbjct: 159 VDLRDEQPQRKMEPTRTIFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFA 218
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
E A A Q GR +R++++ ++P ++ APA
Sbjct: 219 HAEFTDVESAIAGFEMLKGQAPYGRPLRLDYSHSARRPGEIDNSKAPA 266
>gi|322695427|gb|EFY87235.1| RNA recognition motif containing protein [Metarhizium acridum CQMa
102]
Length = 725
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 19/198 (9%)
Query: 62 DTTVETKPEQTQKQNI--RRKLYVFNLPWSFSVAEIKNLFAPCGTVVD-VEIIKHKGGKN 118
DT +E + T++ + RR L+V +LP + + + + F+ V V ++ K ++
Sbjct: 24 DTQIEV-GQSTKRPRVEERRSLFVRSLPANVTNEALADFFSQHFPVKHAVVVVDQKTKES 82
Query: 119 RNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASA-------PAR 171
R + FVT+A ++A AA N D E G+ IR++ A +PR + +A++ P R
Sbjct: 83 RGYGFVTLADSDDALAAKNTLDKAEWEGKRIRIDIA----EPRKRNAANSEKTVHKKPGR 138
Query: 172 ETQH---KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
E KL V NL W ++++ ++ V + +S +G+ G+GFV+ K+
Sbjct: 139 EESQKPPKLIVRNLPWSIKTSEQLSHLFKSYGKVKFADLPQS-KGKLRGFGFVTIRGKKN 197
Query: 229 AEAAISSLDGKELMGRPL 246
AE A+ ++GKE+ GR L
Sbjct: 198 AEKALEGVNGKEIDGRTL 215
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 164 RSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+S P E + L+V +L V + L +FFS +F + VV + S GYGFV+
Sbjct: 31 QSTKRPRVEERRSLFVRSLPANVTNEALADFFSQHFPVKHAVVVVDQKTKESRGYGFVTL 90
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
A ++A AA ++LD E G+ +R+ +
Sbjct: 91 ADSDDALAAKNTLDKAEWEGKRIRIDIAE 119
>gi|223942613|gb|ACN25390.1| unknown [Zea mays]
Length = 164
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 98 LFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
+FA GTV E++ K ++R F FVTM++ EEA AAV + EV R I+V +
Sbjct: 1 MFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEALNGTEVGDRKIKVNVTES 60
Query: 157 FKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG 213
F P RSA P ++Q+K+YV NL+ V + L+ FFS N +S+ V
Sbjct: 61 FL-PNIDRSAPEPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTS 119
Query: 214 RSAGYGFVSFATKEEAEAAISSLD 237
+S GYGFV+F+++EE EAA+++ +
Sbjct: 120 KSKGYGFVTFSSEEEVEAAVATFN 143
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
K+YV NL + + +KN F+ G ++ + G K++ + FVT +S EE +AAV
Sbjct: 82 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 141
Query: 139 FD 140
F+
Sbjct: 142 FN 143
>gi|307105122|gb|EFN53373.1| hypothetical protein CHLNCDRAFT_32263 [Chlorella variabilis]
Length = 220
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 36/209 (17%)
Query: 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136
+ R++YV NL W S ++K+ F CG VV +IK + G+++ + V +PEEA A+
Sbjct: 9 VGRRVYVSNLAWRTSWQDLKDKFRECGNVVYSNVIKDESGRSKGWGIVEFETPEEALTAI 68
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS----------------------------- 167
N + E+ GR I V ++ + + + +
Sbjct: 69 NTLNGVELGGRTILVREDREDRDVKQENGITPPVRPPREPREPRAPAPGRGRGRGRGPPP 128
Query: 168 --APARETQH----KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
A E ++ V+ L W L++ + N V + VV+ +GRS GYG V
Sbjct: 129 EGAEGEEVNQSSGLQIVVNGLPWAWTWKELKDLMAGTGNIVRADVVY-GRDGRSRGYGTV 187
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ T EEAEAAI +G +L GR L ++
Sbjct: 188 RYETAEEAEAAIEQFNGSDLEGRTLSVRL 216
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
++YVSNL+W+ L++ F N V S V+ + GRS G+G V F T EEA AI+
Sbjct: 11 RRVYVSNLAWRTSWQDLKDKFRECGNVVYSNVI-KDESGRSKGWGIVEFETPEEALTAIN 69
Query: 235 SLDGKELMGRPLRLKFGQKNDDVSESN 261
+L+G EL GR + ++ +++ DV + N
Sbjct: 70 TLNGVELGGRTILVREDREDRDVKQEN 96
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
++ V LPW+++ E+K+L A G +V +++ + G++R + V + EEA+AA+ QF
Sbjct: 143 QIVVNGLPWAWTWKELKDLMAGTGNIVRADVVYGRDGRSRGYGTVRYETAEEAEAAIEQF 202
Query: 140 DTQEVSGRIIRVEFAK 155
+ ++ GR + V K
Sbjct: 203 NGSDLEGRTLSVRLDK 218
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+N
Sbjct: 40 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 99
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 100 NGLKLQTKTIKVSYA---------RPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYG 148
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 149 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 201
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 25 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 84
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 85 NYSDPNDADKAINTLNGLKLQTKTIKVSY 113
>gi|358367745|dbj|GAA84363.1| hypothetical protein AKAW_02478 [Aspergillus kawachii IFO 4308]
Length = 546
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL W+ A +++ F G + V I+ + G++R F +V + +A A
Sbjct: 297 LFVGNLSWNVDEAWLQSEFESFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 356
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS-----ASAPARE-------TQHKLYVSNLSWKVR 187
E+ GR+I +++A + Q+ A+A AR L+V NL +
Sbjct: 357 KGAEIDGRVINLDYATGRPANKDQQGGFKDRANARARSFGDQASPESDTLFVGNLPFDAN 416
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
+ E F + + ++ + + GR G+G+V +++ +EA AA + L G +L+GRP+R
Sbjct: 417 EDSVGELFGEKGSILGIRLPTDPDSGRPKGFGYVQYSSVDEARAAFNELQGADLLGRPVR 476
Query: 248 LKF 250
L F
Sbjct: 477 LDF 479
>gi|327305247|ref|XP_003237315.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
gi|326460313|gb|EGD85766.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
Length = 293
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 10/185 (5%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++PE K + YV N+ + + A++K + G V+ II G +R F +V
Sbjct: 74 SRPEPQPKATV----YVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVKF 129
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWK 185
S EEA+ A+++ E GR + V FA+ + +PQR E ++V N++ +
Sbjct: 130 ESVEEAKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKM-----EPTRTIFVGNIAHQ 184
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V L F N +V + G G+ F E A A L G+ GRP
Sbjct: 185 VTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKGQAPYGRP 244
Query: 246 LRLKF 250
LRL +
Sbjct: 245 LRLDY 249
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 147 RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
R +R F +P PQ A+ +YV N+ + + + L+E+ S + +++
Sbjct: 63 RSVRNSFGLPPSRPEPQPKAT---------VYVGNILFDITAADLKEYASKYGKVLGTRI 113
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+++S G S G+G+V F + EEA+ AI + E GR L + F Q
Sbjct: 114 IYDSR-GLSRGFGYVKFESVEEAKKAIDEMHLSEYEGRKLSVNFAQ 158
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 65 VETKPEQTQ-KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFA 122
V+ + EQ Q K R ++V N+ + ++ LF V DV + + + G R FA
Sbjct: 159 VDLRDEQPQRKMEPTRTIFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFA 218
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
E A A Q GR +R++++ ++P ++ APA
Sbjct: 219 HAEFTDVESAIAGFEMLKGQAPYGRPLRLDYSHSARRPGEVDNSKAPA 266
>gi|302506947|ref|XP_003015430.1| nucleic acid-binding protein [Arthroderma benhamiae CBS 112371]
gi|291179002|gb|EFE34790.1| nucleic acid-binding protein [Arthroderma benhamiae CBS 112371]
Length = 293
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 10/185 (5%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++PE K + YV N+ + + A++K + G V+ II G +R F +V
Sbjct: 74 SRPEPQPKATV----YVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRF 129
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWK 185
S EEA+ A+++ E GR + V FA+ + +PQR E ++V N++ +
Sbjct: 130 ESVEEAKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKM-----EPTRTIFVGNIAHQ 184
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V L F N +V + G G+ F E A A L G+ GRP
Sbjct: 185 VTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKGQAPYGRP 244
Query: 246 LRLKF 250
LRL +
Sbjct: 245 LRLDY 249
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 147 RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
R +R F +P PQ A+ +YV N+ + + + L+E+ S + +++
Sbjct: 63 RPVRNSFGLPPSRPEPQPKAT---------VYVGNILFDITAADLKEYASKYGKVLGTRI 113
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+++S G S G+G+V F + EEA+ AI + E GR L + F Q
Sbjct: 114 IYDSR-GLSRGFGYVRFESVEEAKKAIDEMHLSEYEGRKLSVNFAQ 158
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 65 VETKPEQTQ-KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFA 122
V+ + EQ Q K R ++V N+ + ++ LF V DV + + + G R FA
Sbjct: 159 VDLRDEQPQRKMEPTRTIFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFA 218
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
E A A Q GR +R++++ ++P ++ APA
Sbjct: 219 HAEFTDVESAIAGFEMLKGQAPYGRPLRLDYSHSARRPGEIDNSKAPA 266
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NLP + E+ +F G + + + GK+R F FV + E A AV+
Sbjct: 356 LYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALH 415
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++ G ++ V A+K R +R A Q K LYV NL +
Sbjct: 416 DKDYKGNVLYVARAQK----RTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDE 471
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+ F+ F ++S V + +G S G+GFV F++ +EA A++ ++GK L +PL +
Sbjct: 472 KLQNEFTP-FGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVS 530
Query: 250 FGQKND 255
Q+ +
Sbjct: 531 LAQRKE 536
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 9/196 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + FA G ++ ++ + G ++ + FV + E A+AA+ +
Sbjct: 263 IFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVN 322
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
+++ +++ V PR R A +Q LY+ NL + + L E F F
Sbjct: 323 GMQLNDKVVFV----GIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVF-GKF 377
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
P++S V G+ G+GFV++ E A A+ +L K+ G L + QK +E
Sbjct: 378 GPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKR---TE 434
Query: 260 SNKEEEDVSEDQSAES 275
+ E + E Q E+
Sbjct: 435 RDAELKKAHEQQKYET 450
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFAT 225
++PA + LYV L V L E FS PV+S +V ++ RS GY +V++
Sbjct: 165 ASPASQPNTSLYVGELDPTVTEAMLYEIFSM-IGPVASIRVCRDAVTRRSLGYAYVNYLN 223
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNK 262
+AE A+ L+ + + R+ + Q++ + ++ +
Sbjct: 224 AADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQ 260
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 24/202 (11%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
+ T + I +YV NL S + ++KN+F G + ++K GK + F FV +
Sbjct: 210 DSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENA 269
Query: 130 EEAQAAVNQ-----FDTQE-VSGRI---------IRVEFAKKFKKPRPQRSASAPARETQ 174
++A AV FD +E GR ++V++ + K+ A +
Sbjct: 270 DDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKE--------AADKFQS 321
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
LYV NL V L+E F+ S KV+ + N G S G GFV+F+T EEA A+S
Sbjct: 322 SNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPN-GMSRGSGFVAFSTPEEATKAMS 380
Query: 235 SLDGKELMGRPLRLKFGQKNDD 256
+ GK + +PL + Q+ +D
Sbjct: 381 EMSGKMIENKPLYVAVAQRKED 402
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ + F+ G VV V + + + + + +V SP++A A+ +
Sbjct: 42 LYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQEL 101
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ +RV ++ + P +RS + +++ NL + L + FS
Sbjct: 102 NYIPLNGKPVRVMYSH--RDPSVRRSGAG-------NIFIKNLDKSIDHKALHDTFSVFG 152
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N +S KV +S+ G+S GYGFV + T+E A+ A+ L+G L
Sbjct: 153 NIISCKVAVDSS-GQSKGYGFVQYETEESAQKAMGQLNGMLL 193
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ G+++ + FV + E AQ A+ Q +
Sbjct: 130 IFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLN 189
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F ++ Q S + +YV NL+ L+ F F
Sbjct: 190 GMLLNDKQVYVGPFLRR------QERDSTGNKTIFTNVYVKNLAESTTDDDLKNIF-GEF 242
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
++S VV + EG+ G+GFV+F ++A A+ SL+GK
Sbjct: 243 GKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGK 282
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224
A+A A+ LYV +L V + L + FS VS +V + RS GYG+V+F
Sbjct: 30 GAAAAAQFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFT 89
Query: 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+ ++A AI L+ L G+P+R+ + ++ V S
Sbjct: 90 SPQDAARAIQELNYIPLNGKPVRVMYSHRDPSVRRSG 126
>gi|115491713|ref|XP_001210484.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
gi|114197344|gb|EAU39044.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
Length = 478
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 11/190 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG---GKNRNFAFVTMASPEEAQA 134
+R LYV L + +K +F G VV V+II K K N+ FV P A+
Sbjct: 90 KRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAER 149
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
A+ + + + IRV +A + + +++ ++V +LS +V L +
Sbjct: 150 AMQTLNGRRIHQSEIRVNWAYQSNNTNKEDTSN------HFHIFVGDLSNEVNDEILLQA 203
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F VS ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 204 FSA-FGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRCNWANQ 262
Query: 254 NDDVSESNKE 263
S S ++
Sbjct: 263 KGQPSISQQQ 272
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A + + R+A P + LYV L +V L++ F +
Sbjct: 64 TSPMSGNMMSPSSAGGYVR----RAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGH 116
Query: 201 PVSSKVVFESNEGRSAG--YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
VS K++ + N+ S G YGFV F AE A+ +L+G+ + +R+ + ++++
Sbjct: 117 VVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNN-- 174
Query: 259 ESNKEE 264
+NKE+
Sbjct: 175 -TNKED 179
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 10/195 (5%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E QK + +Y+ N+ + + E+ +F G++ +++ G +R F FV P
Sbjct: 174 ELGQKAKLFTNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDP 233
Query: 130 EEAQAAVNQFDTQEV-SGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSN 181
+EA+ AV++ +E G+ V A+K K+ Q R LYV N
Sbjct: 234 KEAEKAVSELHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKN 293
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
L + HLR FS S+KV+ + +GRS G+GFV F++ EEA A++ ++ + +
Sbjct: 294 LDDTIDDEHLRREFSVFGTITSAKVMMD--DGRSKGFGFVCFSSPEEATKAVTEMNNRIV 351
Query: 242 MGRPLRLKFGQKNDD 256
+PL + Q+ ++
Sbjct: 352 GTKPLYVALAQRKEE 366
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYV 179
+A+V + +A+ A++ + + ++G +R+ ++++ P ++S +++
Sbjct: 44 GYAYVNFQNMADAECALDTMNFEILNGCPMRIMWSQR--DPSLRKSGVG-------NVFI 94
Query: 180 SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
NL + + + + FSA N +S KV + G+S GYGFV F ++ A +I ++G
Sbjct: 95 KNLDKNIDNKAMYDTFSAFGNILSCKVA-QDETGQSKGYGFVHFDMEQSATQSIEKVNGM 153
Query: 240 ELMGR 244
L G+
Sbjct: 154 LLNGK 158
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FSA VS +V ++ RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G P+R+ + Q++ + +S
Sbjct: 64 NFEILNGCPMRIMWSQRDPSLRKSG 88
>gi|395512536|ref|XP_003775304.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3 [Sarcophilus
harrisii]
Length = 287
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L V LP + + E K+LF G + ++++ K G++ + FV P +A A+N
Sbjct: 43 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 102
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 103 NGLKLQTKTIKVSYA---------RPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYG 151
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 152 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKF 204
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S + +++ L V+ L + + F + S K+V + G+S GYGFV
Sbjct: 28 PLVSTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 87
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +A+ AI++L+G +L + +++ +
Sbjct: 88 NYVDPNDADKAINTLNGLKLQTKTIKVSY 116
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E + ++ + L V LP + + E+K+LF G + ++++ K G++ + FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
P++A+ A+N + + + I+V +A R +SA R+ LYVS L +
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQ 166
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPL 246
L + FS ++S+++ + G S G GF+ F + EAE AI L+G++ G P+
Sbjct: 167 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 226
Query: 247 RLKF 250
+KF
Sbjct: 227 TVKF 230
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 44/235 (18%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I + G
Sbjct: 133 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 192
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFAKKFKKP-----------RPQR 164
+R F+ EA+ A+ + Q+ G I V+FA + P R
Sbjct: 193 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPNR 252
Query: 165 SASAPARETQHK-----------------------------LYVSNLSWKVRSTHLREFF 195
P + + ++V NL+ + L + F
Sbjct: 253 RYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMF 312
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ KV+ + N + G+GFV+ +EA AI+SL+G L R L++ F
Sbjct: 313 GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 367
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S+ +++ L V+ L + L+ F + S K+V + G+S GYGFV++
Sbjct: 59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 118
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQ 252
++AE AI++L+G L + +++ + +
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYAR 144
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E + ++ + L V LP + + E+K+LF G + ++++ K G++ + FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
P++A+ A+N + + + I+V +A R +SA R+ LYVS L +
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQ 166
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPL 246
L + FS ++S+++ + G S G GF+ F + EAE AI L+G++ G P+
Sbjct: 167 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 226
Query: 247 RLKF 250
+KF
Sbjct: 227 TVKF 230
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 43/234 (18%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I + G
Sbjct: 133 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 192
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFAKKFKKP-----------RPQR 164
+R F+ EA+ A+ + Q+ G I V+FA + P R
Sbjct: 193 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPNR 252
Query: 165 SASAPARETQHK----------------------------LYVSNLSWKVRSTHLREFFS 196
P + + ++V NL+ + L + F
Sbjct: 253 RYPGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFG 312
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ KV+ + N + G+GFV+ +EA AI+SL+G L R L++ F
Sbjct: 313 PFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 366
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S+ +++ L V+ L + L+ F + S K+V + G+S GYGFV++
Sbjct: 59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 118
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQ 252
++AE AI++L+G L + +++ + +
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYAR 144
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 17/198 (8%)
Query: 71 QTQKQNIR-RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
Q ++QN + ++V NL S + E+K +F G + +++ GK++ F FV +P
Sbjct: 171 QEREQNGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENP 230
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LY 178
+EA AV + +++ + V A+K + +R A A+ Q + LY
Sbjct: 231 DEAAKAVVGLNGKKIEDKEWYVGRAQK----KSEREAELRAKYEQERKERIDRYQGANLY 286
Query: 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+ NL V LRE F A+F ++S V +G+S G GFV+++ EEA A ++G
Sbjct: 287 LKNLDDDVDDERLREIF-ADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNG 345
Query: 239 KELMGRPLRLKFGQKNDD 256
K + +P+ + Q+ ++
Sbjct: 346 KMIGSKPIYVAMAQRKEE 363
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + S ++ +LF G V+ + + + ++ +A+V + ++A A+
Sbjct: 6 LYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELL 65
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V+G+ +R+ F+ + P ++S +A +++ NL + + L + F +
Sbjct: 66 NFTPVNGKAVRIMFSHR--DPSIRKSGTA-------NIFIKNLDRAIDNKALHDTFVSFG 116
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV +SN G+S GYGFV F +E A+ AI ++G
Sbjct: 117 NILSCKVATDSN-GQSKGYGFVQFEQEESAQVAIDKVNG 154
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 61 QDTTVETKPEQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116
++ + K EQ +K+ I R LY+ NL ++ +FA G++ ++++ G
Sbjct: 261 REAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQG 320
Query: 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSA 166
+++ FV ++PEEA A + + + + + I V A++ ++ R + A
Sbjct: 321 QSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRKEERRAKLQA 370
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL S + ++KN+F G + I++ GK++ F FV + + A AV +
Sbjct: 217 VYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLN 276
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+++ + V A+K K Q A + LY+ NL + +L+E
Sbjct: 277 GKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKE 336
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS +F ++S V G S G GFV+F+T EEA A++ ++GK ++ +PL + Q+
Sbjct: 337 LFS-DFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQR 395
Query: 254 NDD 256
++
Sbjct: 396 KEE 398
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 102/197 (51%), Gaps = 12/197 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + +++ ++F G VV V + + ++ + +V SP++A A++
Sbjct: 39 LYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDIL 98
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + IR+ ++ + P ++S + +++ NL + L + FS+
Sbjct: 99 NFTPFNNKPIRIMYSH--RDPSIRKSGTG-------NIFIKNLDKTIDHKALHDTFSSFG 149
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVS 258
N +S KV +S+ G+S GYGFV F +E A+ AI L+G L + + + F +K++ S
Sbjct: 150 NILSCKVATDSS-GQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDS 208
Query: 259 ESNKEEEDVSEDQSAES 275
SNK+ +V +ES
Sbjct: 209 ASNKKFNNVYVKNLSES 225
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G++R + FV + E AQ A+++ +
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLN 186
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + + F + + SAS + + +YV NLS L+ F +
Sbjct: 187 GMLLNDKQV---YVGHFLRKHERDSAS---NKKFNNVYVKNLSESTTEEDLKNIF-GEYG 239
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S V+ +G+S +GFV+F + A A+ SL+GK++
Sbjct: 240 EITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKI 280
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 70 EQTQKQNIRR----KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
EQ+ K+ + + LY+ NL S S +K LF+ G + ++++ G +R FV
Sbjct: 305 EQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVA 364
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156
++PEEA A+ + + + V + + V A++
Sbjct: 365 FSTPEEASRALAEMNGKMVVSKPLYVALAQR 395
>gi|296815788|ref|XP_002848231.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
gi|238841256|gb|EEQ30918.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
Length = 507
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 8/188 (4%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G V V+II K K N+ F+ P A+ A
Sbjct: 101 KRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGAAERA 160
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + V IRV +A + +AS ++V +LS +V L + F
Sbjct: 161 MQTLNGRRVHQSEIRVNWAYQ------SNTASKEDTSNHFHIFVGDLSNEVNDEVLLQAF 214
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
SA + ++V+++ GRS GYGFV+F + +AE A+SS+DG+ L R +R + +
Sbjct: 215 SACGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMDGEWLGSRAIRCNWANQKG 274
Query: 256 DVSESNKE 263
S S ++
Sbjct: 275 QPSISQQQ 282
>gi|358399615|gb|EHK48952.1| hypothetical protein TRIATDRAFT_164478, partial [Trichoderma
atroviride IMI 206040]
Length = 571
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPE 130
T+ + RR ++V L E+K F G V + +I+K + G+++ +V S +
Sbjct: 177 TEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISGRSKGVGYVEFKSED 236
Query: 131 EAQAAVNQFDTQEVSGRIIRVEF--AKKFKKPR-PQRSASAPARETQHKLYVSNLSWKVR 187
Q A+ Q Q++ G + V+ A+K ++ R P ++ P H+LYV N+ + V
Sbjct: 237 AVQQAL-QLTGQKLLGIPVIVQHTEAEKNRQARNPDSTSGHPNSIPFHRLYVGNIHFNVT 295
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L+ F F + + + + GRS GYGFV F +A A+ ++G +L GRP+R
Sbjct: 296 EQDLQAVFEP-FGELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFDLAGRPIR 354
Query: 248 LKFG 251
+ G
Sbjct: 355 VGLG 358
>gi|342884065|gb|EGU84408.1| hypothetical protein FOXB_05073 [Fusarium oxysporum Fo5176]
Length = 566
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
E P+ T+ + RR ++V L E+K F G V + +I+K + +++ +V
Sbjct: 165 EGNPQLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISQRSKGVGYV 224
Query: 125 TMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPR-PQRSASAPARETQHKLYVSN 181
+ E A+ Q Q++ G I++V A+K ++ R P+ S P H+LYV N
Sbjct: 225 EFKNEESVTQAL-QLTGQKLLGIPVIVQVTEAEKNRQARNPEASGPHPNSIPFHRLYVGN 283
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ + V L+ F F + + + GRS GYGFV F +A A+ ++G +L
Sbjct: 284 IHFNVTEQDLQAVFEP-FGELEFVQLQKDENGRSRGYGFVQFRDAGQAREALEKMNGFDL 342
Query: 242 MGRPLRLKFG 251
GRP+R+ G
Sbjct: 343 AGRPIRVGLG 352
>gi|299471941|emb|CBN79621.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 362
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V NL W + +++ G VV E+ H G+++ + VT A P A+AA+ Q
Sbjct: 54 VFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQL 113
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ GR I + +K + S P ++V NL W L++ F A +
Sbjct: 114 NNADLGGRPIHIRLDRK----EVEASGGFP-------VFVGNLPWSTTDEDLQQIF-APY 161
Query: 200 NPVSSKVVFESN-EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
P V ++N GRS G+G + FAT E + AIS + ++ RP++++
Sbjct: 162 EPYDCHV--KTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVR 210
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
++V NLSW S LR F + VS++V ++ GRS G+G V++A AEAAI L
Sbjct: 54 VFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQL 113
Query: 237 DGKELMGRPLRLKFGQKNDDVS 258
+ +L GRP+ ++ +K + S
Sbjct: 114 NNADLGGRPIHIRLDRKEVEAS 135
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
++V NL+W L F VS+ V + GRS G+G V +++ E E A++ L
Sbjct: 287 VFVGNLAWGTTDDDLLATFQTAGAVVSAHVQI-APSGRSKGWGLVKYSSPTETETAVTEL 345
Query: 237 DGKELMGRPLRLKFGQK 253
+ L R L ++ +K
Sbjct: 346 NNTMLHERRLTVRLDRK 362
>gi|109123517|ref|XP_001107360.1| PREDICTED: ELAV-like protein 3-like [Macaca mulatta]
gi|296232958|ref|XP_002761808.1| PREDICTED: ELAV-like protein 3 [Callithrix jacchus]
Length = 251
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+N
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 101 NGLKLQTKTIKVSYA---------RPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYG 149
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSY 114
>gi|322709421|gb|EFZ00997.1| oligouridylate binding protein ,putative [Metarhizium anisopliae
ARSEF 23]
Length = 472
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+R LYV L + ++ +F G V +V+II K K N+ FV P A+ A++
Sbjct: 83 KRALYVGGLEQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAAERAMS 142
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
+ + R IRV +A + + ++S ++V +LS +V L + FSA
Sbjct: 143 TLNGR----REIRVNWAYQSNTSNKEDTSS------HFHIFVGDLSNEVNDDILLQAFSA 192
Query: 198 NFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F VS ++V+++ GR+ GYGFV+F + +AE A+SS+DG+ L R +R +
Sbjct: 193 -FGTVSEARVMWDMKTGRTRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNW 245
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
+R+A P + LYV L +V LR+ F + + K++ + N + YGFV
Sbjct: 75 RRAAPEPNKRA---LYVGGLEQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGFNYGFVE 130
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 264
+ AE A+S+L+G+ R +R+ + +++ SNKE+
Sbjct: 131 YDDPGAAERAMSTLNGR----REIRVNWAYQSN---TSNKED 165
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E ++ + L V LP + + E+K+LF G + ++++ K G++ + FV
Sbjct: 28 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 87
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
P++A+ A+N + + + I+V +A R +SA R+ LYVS L +
Sbjct: 88 PKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQ 136
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPL 246
L + FS ++S+++ + G S G GF+ F + EAE AI L+G++ G P+
Sbjct: 137 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 196
Query: 247 RLKF 250
+KF
Sbjct: 197 TVKF 200
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + +F P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
+++ L V+ L + L+ F + S K+V + G+S GYGFV++ ++AE
Sbjct: 34 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 93
Query: 232 AISSLDGKELMGRPLRLKFGQ 252
AI++L+G L + +++ + +
Sbjct: 94 AINTLNGLRLQTKTIKVSYAR 114
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NL+ + L + F F V++ KV+ + N + G+GFV+ +EA AI+S
Sbjct: 278 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 337 LNGYRLGDRVLQVSF 351
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN--- 137
++V NL + + +++ +F GT+ V +++ G+++ F FV SP+EA AV
Sbjct: 215 VFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLN 274
Query: 138 --QFDTQE-VSGRIIR-----VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+FD +E GR + +E +KF+K Q +A + LY+ NL V
Sbjct: 275 GKKFDDKEWYVGRAQKKSEREMELKEKFEK-NLQETAD---KYQNTNLYLKNLDDTVDDE 330
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LRE F A F ++S V + G S G GFV+F + E+A A++ ++ K + +PL +
Sbjct: 331 KLRELF-AEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVA 389
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 390 LAQRKED 396
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S A++ ++FA G VV V + + K+ +A+V +P +A A+
Sbjct: 36 LYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEML 95
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++GR IR+ ++ + P ++S +A +++ NL + + L + F
Sbjct: 96 NFTPINGRPIRIMYSN--RDPSLRKSGTA-------NIFIKNLDKSIDNKALYDTFCVFG 146
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV +++ G S GYGFV + E A AAI L+G
Sbjct: 147 NILSCKVATDAS-GESKGYGFVQYERDEAAHAAIEKLNG 184
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F G ++ ++ G+++ + FV E A AA+ + +
Sbjct: 124 IFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLN 183
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q ++P + ++V NLS LRE F F
Sbjct: 184 GMLMNDKKVYVGPFIRK------QERDNSPGNVKFNNVFVKNLSETTTEDDLREIF-GKF 236
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
++S VV +GRS +GFV+F + +EA A+ L+GK+
Sbjct: 237 GTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKF 278
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V+ L + F+ VS +V + +S GY +V++ T +A A+ L
Sbjct: 36 LYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEML 95
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + ++ + +S
Sbjct: 96 NFTPINGRPIRIMYSNRDPSLRKSG 120
>gi|302659529|ref|XP_003021453.1| nucleic acid-binding protein [Trichophyton verrucosum HKI 0517]
gi|291185354|gb|EFE40835.1| nucleic acid-binding protein [Trichophyton verrucosum HKI 0517]
Length = 293
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 10/185 (5%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTM 126
++PE K + YV N+ + + A++K + G V+ II G +R F +V
Sbjct: 74 SRPEPQPKATV----YVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRF 129
Query: 127 ASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWK 185
S EEA+ A+++ E GR + V FA+ + +PQR E ++V N++ +
Sbjct: 130 ESVEEAKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKM-----EPTRTIFVGNIAHQ 184
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
V L F N +V + G G+ F E A A L G+ GRP
Sbjct: 185 VTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKGQAPYGRP 244
Query: 246 LRLKF 250
LRL +
Sbjct: 245 LRLDY 249
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 147 RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
R +R F +P PQ A+ +YV N+ + + + L+E+ S + +++
Sbjct: 63 RPVRNSFGLPPSRPEPQPKAT---------VYVGNILFDITAADLKEYASKYGKVLGTRI 113
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+++S G S G+G+V F + EEA+ AI + E GR L + F Q
Sbjct: 114 IYDSR-GLSRGFGYVRFESVEEAKKAIDEMHLSEYEGRKLSVNFAQ 158
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 65 VETKPEQTQ-KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFA 122
V+ + EQ Q K R ++V N+ + ++ LF V DV + + + G R FA
Sbjct: 159 VDLRDEQPQRKMEPTRTIFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFA 218
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
E A A Q GR +R++++ ++P ++ APA
Sbjct: 219 HAEFTDVESAIAGFEMLKGQAPYGRPLRLDYSHSARRPGEIDNSKAPA 266
>gi|134077058|emb|CAK39931.1| unnamed protein product [Aspergillus niger]
Length = 497
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG---GKNRNFAFVTMASPEEAQA 134
+R LYV L + +K +F G VV V+II K K N+ FV P A+
Sbjct: 90 KRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAER 149
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
A+ + + + IRV +A + S + ++V +LS +V L +
Sbjct: 150 AMQTLNGRRIHQSEIRVNWAYQ------SNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQA 203
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F VS ++V+++ GRS GYGFV+F + +A+ A+SS+DG+ L R +R + +
Sbjct: 204 FSA-FGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQ 262
Query: 254 NDDVSESNKE 263
S S ++
Sbjct: 263 KGQPSISQQQ 272
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 36/184 (19%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G+V + ++ K G++R + FV +A A++ D + + R IR +A +
Sbjct: 204 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQK 263
Query: 158 KKPR-PQRSASAPARET----------------------------QHKLYVSNLSWKVRS 188
+P Q+ A A T Q YV NL+
Sbjct: 264 GQPSISQQQAMAAMGMTPTTAFGHHHFPTHGIQSYDMVVQQTPQWQTTCYVGNLTPYTTQ 323
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
T L F NF V E+ G+ F+ T E A AI L+G + GRPL+
Sbjct: 324 TDLVPLFQ-NFG-----YVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNVNGRPLKC 377
Query: 249 KFGQ 252
+G+
Sbjct: 378 SWGK 381
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A F + R+A P + LYV L +V L++ F +
Sbjct: 64 TSPMSGNMMSPTSAGGFVR----RAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGH 116
Query: 201 PVSSKVVFESNEGRSAG--YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
VS K++ + N+ S G YGFV F AE A+ +L+G+ + +R+ + +++
Sbjct: 117 VVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSN--- 173
Query: 259 ESNKEE 264
+NKE+
Sbjct: 174 STNKED 179
>gi|47220048|emb|CAG12196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV P +A A+
Sbjct: 35 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 94
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 95 NTLNGLKLQTKTIKVSYA---------RPSSASIRDA--NLYVSGLPKTMSQKDMEQLFS 143
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 144 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 199
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + LF P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 282 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 341
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 342 NGYRLGDRVLQVSF 355
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S + +++ L V+ L + + F + S K+V + G+S GYGFV
Sbjct: 23 PVISTNGSTDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 82
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +A+ AI++L+G +L + +++ +
Sbjct: 83 NYVDPNDADKAINTLNGLKLQTKTIKVSY 111
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NLS + + L + F F V++ KV+ + + G+GFV+ +EA AI+S
Sbjct: 282 IFVYNLSPEADESVLWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 340
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 341 LNGYRLGDRVLQVSF 355
>gi|344240064|gb|EGV96167.1| ELAV-like protein 3 [Cricetulus griseus]
Length = 352
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 30 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 89
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 90 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFS 138
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 139 QYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 194
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + LF P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 330
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 331 NGYRLGERVLQVSF 344
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 18 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 77
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 78 NYSDPNDADKAINTLNGLKLQTKTIKVSY 106
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
++V NLS + + L + F + KV+ + + G+GFV+ +EA AI+SL
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 330
Query: 237 DGKELMGRPLRLKF 250
+G L R L++ F
Sbjct: 331 NGYRLGERVLQVSF 344
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G V V+II K K N+ FV P+ A+ A
Sbjct: 81 KRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPQCAERA 140
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + V + IRV +A + + S ++V +LS +V L + F
Sbjct: 141 MQTLNGRRVHQQEIRVNWAYQ------SNTISKEDTSNHFHIFVGDLSNEVNDEVLLQAF 194
Query: 196 SANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
SA F VS ++V+++ GRS GYGFVSF + +AE A+SS+DG+ L R +R + +
Sbjct: 195 SA-FGTVSEARVMWDMKTGRSRGYGFVSFRDRGDAEKALSSMDGEWLGSRAIRCNWANQK 253
Query: 255 DDVSESNKE 263
S S +
Sbjct: 254 GQPSYSQAQ 262
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN-EGRSAGYGFV 221
+R+A P + LYV L +V L++ F + S K++ + N + + YGFV
Sbjct: 73 RRAAPEPNKRA---LYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFV 129
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261
+ + AE A+ +L+G+ + + +R+ + +++ +S+ +
Sbjct: 130 EYDDPQCAERAMQTLNGRRVHQQEIRVNWAYQSNTISKED 169
>gi|18463972|gb|AAL73053.1| HUC [Sphoeroides nephelus]
Length = 356
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV P +A A+
Sbjct: 35 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 94
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 95 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKDMEQLFS 143
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 144 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 199
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + LF P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 275 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 334
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 335 NGYRLGDRVLQVSF 348
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S + +++ L V+ L + + F + S K+V + G+S GYGFV
Sbjct: 23 PVISTNGSTDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 82
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +A+ AI++L+G +L + +++ +
Sbjct: 83 NYVDPNDADKAINTLNGLKLQTKTIKVSY 111
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NLS + + L + F F V++ KV+ + + G+GFV+ +EA AI+S
Sbjct: 275 IFVYNLSPEADESVLWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 333
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 334 LNGYRLGDRVLQVSF 348
>gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegicus]
gi|34328053|ref|NP_034617.1| ELAV-like protein 3 [Mus musculus]
gi|3913870|sp|Q60900.1|ELAV3_MOUSE RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC
gi|1146120|gb|AAC52999.1| mHuC-L [Mus musculus]
gi|26006109|dbj|BAC41352.1| HuC [Rattus norvegicus]
gi|30354162|gb|AAH52097.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Mus musculus]
gi|148693297|gb|EDL25244.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Mus musculus]
gi|149020436|gb|EDL78241.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Rattus norvegicus]
Length = 367
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + LF P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSY 114
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
++V NLS + + L + F + KV+ + + G+GFV+ +EA AI+SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 237 DGKELMGRPLRLKF 250
+G L R L++ F
Sbjct: 346 NGYRLGERVLQVSF 359
>gi|403343651|gb|EJY71156.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 491
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
+++L+V NL + + + F GTV +V++ + G + + FAFV A+ +EAQAA++
Sbjct: 239 KKELFVGNLSFHTTEDSLGQAFGEYGTVTNVKLPQQDG-RPKGFAFVEFATHKEAQAALD 297
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRP---------QRSASAPARETQHKLYVSNLSWKVRS 188
++ Q+ GR +R+ F+ QR A + L+V N+S++
Sbjct: 298 AYNGQDFEGRALRINFSGGKPAGAGGPGGNQGGFQRGAPSGGDGQSTTLFVGNISFQTTQ 357
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L FS P+ + V ++GR G+ V F + E A+ A+ ++G GR LRL
Sbjct: 358 DSLERHFS-KCGPIKAVRVAMGDDGRVKGFAHVEFESPESAQKAL-EMNGAPCDGRELRL 415
Query: 249 KFGQK 253
Q+
Sbjct: 416 DLSQQ 420
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 169 PARETQHK--LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
PA E K L+V NLS+ L + F + V++ V +GR G+ FV FAT
Sbjct: 232 PANEDDDKKELFVGNLSFHTTEDSLGQAF-GEYGTVTN-VKLPQQDGRPKGFAFVEFATH 289
Query: 227 EEAEAAISSLDGKELMGRPLRLKF 250
+EA+AA+ + +G++ GR LR+ F
Sbjct: 290 KEAQAALDAYNGQDFEGRALRINF 313
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVN 137
+ ++V L W+ + FA CG VV + + G++R F +V ++ E + A+
Sbjct: 333 KSIFVGRLSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFSTSEAVEKAI- 391
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK------------LYVSNLSWK 185
+ + +E+ GR + V+ K P + AS RE + K L+V NLS+
Sbjct: 392 ELNGKEIDGRAVNVD-----KSNPPNKDAS---REKRAKTFGDTTSPPSATLFVGNLSFG 443
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ L E FS + + ++ + GR G+G+V F+ E A+ A +++ G EL GR
Sbjct: 444 MNDDALWEAFSEHGEVKNVRLPTDRESGRPKGFGYVEFSDVETAKKAHAAMQGVELDGRS 503
Query: 246 LRLKFGQKNDD 256
+RL F Q DD
Sbjct: 504 VRLDFSQPRDD 514
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N ++ +F+ G + V+++ GK++ F FV+ S E A+ AV + +
Sbjct: 304 VYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 363
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAP----------ARETQH-KLYVSNLSWKVRST 189
++++G+++ V A+K + +R A AR Q KLY+ NL V
Sbjct: 364 GKDINGQLVFVGRAQK----KEERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDD 419
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS+ F +S V E EG+ G+G V F++ EEA A++ ++G+ L +PL +
Sbjct: 420 RLRRAFSS-FGSISRVKVME-EEGQRKGFGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIA 477
Query: 250 FGQK 253
++
Sbjct: 478 LAKR 481
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 27/270 (10%)
Query: 1 MAALEAAATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSLSY---NFPTRNLCLQVC 57
+ L A AT L FS P L I++ + L Y NF +
Sbjct: 126 VGDLHADATEDLLFRK---FSXAGPVL--SIRICRDVATRRPLGYAYVNFLRPADAQKAL 180
Query: 58 STLQDTTVETKPEQ---TQKQNIRRK-----LYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
T+ VE KP + +Q+ RK + + NL S + F+ G ++ +
Sbjct: 181 DTMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILSSK 240
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE--FAKKFKKPRPQRSAS 167
++ G ++ +AFV S A A+ QE++G++IR F+ R R A
Sbjct: 241 VMSDDQG-SKGYAFVHFQSQSAADCAI-----QEMNGKVIRDRQVLVAPFRSRR-DREAE 293
Query: 168 APARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
R ++ +YV N + L+ FS +S KV+ +S+ G+S G+GFVSF +
Sbjct: 294 LRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSS-GKSKGFGFVSFDSH 352
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
E A+ A+ ++GK++ G+ + + QK ++
Sbjct: 353 EAAKKAVEEMNGKDINGQLVFVGRAQKKEE 382
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + +A+V P +AQ A++
Sbjct: 124 LYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALDTM 183
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V G+ IR+ ++ QR A + + + NL V + L E FS
Sbjct: 184 NFDAVEGKPIRLMWS--------QRDACL-RKSGVGNVIIKNLDRSVDNKTLYEHFSGFG 234
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+SSKV+ S++ S GY FV F ++ A+ AI ++GK + R
Sbjct: 235 RILSSKVM--SDDQGSKGYAFVHFQSQSAADCAIQEMNGKVIRDR 277
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV P +A A+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 97 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKDMEQLFS 145
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 146 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 201
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 57/248 (22%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + S +++ LF+ G ++ I + G
Sbjct: 104 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGI 163
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFAKKFKKPRPQ-----------R 164
+R F+ EA+ A+ + Q+ G I V+FA + Q R
Sbjct: 164 SRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQTAAR 223
Query: 165 SASAPARETQHKLYVSNL---SWKVRS----------THLRE------------FFSANF 199
+ P + + NL S+ V+S T L F N
Sbjct: 224 RYTGPLHHQTQRFRLDNLLNASYGVKSRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNL 283
Query: 200 NP-----------------VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+P + KV+ + + G+GFV+ +EA AI+SL+G L
Sbjct: 284 SPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 343
Query: 243 GRPLRLKF 250
R L++ F
Sbjct: 344 DRVLQVSF 351
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S + +++ L V+ L + + F + S K+V + G+S GYGFV
Sbjct: 25 PVISTNGSTDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 84
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +A+ AI++L+G +L + +++ +
Sbjct: 85 NYVDPNDADKAINTLNGLKLQTKTIKVSY 113
>gi|410902665|ref|XP_003964814.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV P +A A+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 97 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKDMEQLFS 145
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 146 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 201
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + LF P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 277 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 336
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 337 NGYRLGDRVLQVSF 350
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S + +++ L V+ L + + F + S K+V + G+S GYGFV
Sbjct: 25 PVISTNGSTDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 84
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +A+ AI++L+G +L + +++ +
Sbjct: 85 NYVDPNDADKAINTLNGLKLQTKTIKVSY 113
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NLS + + L + F F V++ KV+ + + G+GFV+ +EA AI+S
Sbjct: 277 IFVYNLSPEADESVLWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 335
Query: 236 LDGKELMGRPLRLKF 250
L+G L R L++ F
Sbjct: 336 LNGYRLGDRVLQVSF 350
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NLP FS +++ FAP G + +++ G ++ F FV PE A AV + +
Sbjct: 178 VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKAN 237
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK--------LYVSNLSWKVRSTHLR 192
+ + + + V A+K K+ R + R +K LY+ N+ + L+
Sbjct: 238 GKAIGDKTLYVGRAQK-KEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 296
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ F F V+S V GRS G GFVSFAT E + AI+ ++G+ + +PL + Q
Sbjct: 297 KLFE-EFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQ 355
Query: 253 KNDD 256
++
Sbjct: 356 PKEE 359
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + ++ LF+ V V + + G + + +V S +EA A+
Sbjct: 4 LYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEAL 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IRV F+ + P ++S A L+V NL + S +L E FS+
Sbjct: 64 NFTPLIGKYIRVMFSNR--DPSLRKSGRA-------NLFVKNLEPNIDSKNLYEIFSSFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
+S KV +S G+S GYGFV + T+E AEAAI+ L+G
Sbjct: 115 AILSCKVATDS-AGQSKGYGFVQYETEESAEAAINGLNG 152
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV +L+ V L FS PV++ +V + G S GYG+V+F +++EA A+ +
Sbjct: 4 LYVGDLAETVDEPQLHALFS-QVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 62
Query: 236 LDGKELMGRPLRLKFGQKNDDVSESNK 262
L+ L+G+ +R+ F ++ + +S +
Sbjct: 63 LNFTPLIGKYIRVMFSNRDPSLRKSGR 89
>gi|358371808|dbj|GAA88414.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG---GKNRNFAFVTMASPEEAQA 134
+R LYV L + +K +F G VV V+II K K N+ FV P A+
Sbjct: 90 KRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAER 149
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
A+ + + + IRV +A + S + ++V +LS +V L +
Sbjct: 150 AMQTLNGRRIHQSEIRVNWAYQ------SNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQA 203
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F VS ++V+++ GRS GYGFV+F + +A+ A+SS+DG+ L R +R + +
Sbjct: 204 FSA-FGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQ 262
Query: 254 NDDVSESNKE 263
S S ++
Sbjct: 263 KGQPSISQQQ 272
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 36/184 (19%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G+V + ++ K G++R + FV +A A++ D + + R IR +A +
Sbjct: 204 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQK 263
Query: 158 KKPR-PQRSASAPARET----------------------------QHKLYVSNLSWKVRS 188
+P Q+ A A T Q YV NL+
Sbjct: 264 GQPSISQQQAMAAMGMTPTTAFGHHHFPTHGIQSYDMVVQQTPQWQTTCYVGNLTPYTTQ 323
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
T L F NF V E+ G+ F+ T E A AI L+G + GRPL+
Sbjct: 324 TDLVPLFQ-NFG-----YVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNVNGRPLKC 377
Query: 249 KFGQ 252
+G+
Sbjct: 378 SWGK 381
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A F + R+A P + LYV L +V L++ F +
Sbjct: 64 TSPMSGNMMSPTSAGGFVR----RAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGH 116
Query: 201 PVSSKVVFESNEGRSAG--YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
VS K++ + N+ S G YGFV F AE A+ +L+G+ + +R+ + +++
Sbjct: 117 VVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSN--- 173
Query: 259 ESNKEE 264
+NKE+
Sbjct: 174 STNKED 179
>gi|169768824|ref|XP_001818882.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus oryzae RIB40]
gi|238498168|ref|XP_002380319.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|83766740|dbj|BAE56880.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693593|gb|EED49938.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|391874569|gb|EIT83434.1| RRM domain protein [Aspergillus oryzae 3.042]
Length = 477
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG---GKNRNFAFVTMASPEEAQA 134
+R LYV L + +K +F G VV V+II K K N+ FV P A+
Sbjct: 89 KRALYVGGLDQRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAER 148
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
A+ + + + IRV +A + S + ++V +LS +V L++
Sbjct: 149 AMQTLNGRRIHQSEIRVNWAYQ------SNSTNKEDTSNHFHIFVGDLSNEVNDEILQQA 202
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F VS ++V+++ GRS GYGFV+F + +A+ A+ S+DG+ L R +R + +
Sbjct: 203 FSA-FGSVSEARVMWDMKTGRSRGYGFVAFRDRADADKALGSMDGEWLGSRAIRCNWANQ 261
Query: 254 NDDVSESNKE 263
S S ++
Sbjct: 262 KGQPSISQQQ 271
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A + + R+A P + LYV L +V L++ F +
Sbjct: 63 TSPMSGNMMSPTSAGGYVR----RAAPEPNKRA---LYVGGLDQRVTEDILKQIFETTGH 115
Query: 201 PVSSKVVFESNEGRSAG--YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
VS K++ + N+ S G YGFV F AE A+ +L+G+ + +R+ + +++
Sbjct: 116 VVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSN--- 172
Query: 259 ESNKEE 264
+NKE+
Sbjct: 173 STNKED 178
>gi|326477036|gb|EGE01046.1| RNA recognition motif-containing protein [Trichophyton equinum CBS
127.97]
Length = 300
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 6/171 (3%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ + + A++K + G V+ II G +R F +V S EEA+ A+++
Sbjct: 91 VYVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRFESVEEAKKAIDEMH 150
Query: 141 TQEVSGRIIRVEFAK-KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
E GR + V FA+ + +PQR E ++V N++ +V L F
Sbjct: 151 LSEYEGRKLSVNFAQVDLRDEQPQRKM-----EPTRTIFVGNIAHQVTDRDLHALFDDIP 205
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
N +V + G G+ F E A A L G+ GRPLRL +
Sbjct: 206 NVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKGQAPYGRPLRLDY 256
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 147 RIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV 206
R +R F +P+PQ A+ +YV N+ + + + L+E+ S + +++
Sbjct: 70 RPVRNSFGLPPSRPKPQPKAT---------VYVGNILFDITAADLKEYASKYGKVLGTRI 120
Query: 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+++S G S G+G+V F + EEA+ AI + E GR L + F Q
Sbjct: 121 IYDSR-GLSRGFGYVRFESVEEAKKAIDEMHLSEYEGRKLSVNFAQ 165
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 65 VETKPEQTQ-KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFA 122
V+ + EQ Q K R ++V N+ + ++ LF V DV + + + G R FA
Sbjct: 166 VDLRDEQPQRKMEPTRTIFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFA 225
Query: 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPA 170
E A A Q GR +R++++ ++P ++ APA
Sbjct: 226 HAEFTDVESAIAGFEMLKGQAPYGRPLRLDYSHSARRPGEIDNSKAPA 273
>gi|259488599|tpe|CBF88164.1| TPA: nuclear and cytoplasmic polyadenylated RNA-binding protein
pub1 (AFU_orthologue; AFUA_1G12000) [Aspergillus
nidulans FGSC A4]
Length = 477
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 10/189 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--GKNRNFAFVTMASPEEAQAA 135
+R LYV L + +K +F G V+ V+II K K N+ FV P A+ A
Sbjct: 89 KRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERA 148
Query: 136 VNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195
+ + + + IRV +A + +A+ ++V +LS +V L + F
Sbjct: 149 MQTLNGRRIHQSEIRVNWAYQ------SNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAF 202
Query: 196 SANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
SA F VS ++V+++ GRS GYGFV+F + +AE A++S+DG+ L R +R + +
Sbjct: 203 SA-FGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQK 261
Query: 255 DDVSESNKE 263
S S ++
Sbjct: 262 GQPSISQQQ 270
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A + + R+A P + LYV L +V L++ F +
Sbjct: 63 TTPMSGNMVSPTSAGGYVR----RAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGH 115
Query: 201 PVSSKVVFESN-EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
+S K++ + N + A YGFV F AE A+ +L+G+ + +R+ + +++
Sbjct: 116 VISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSN---T 172
Query: 260 SNKEE 264
+NKE+
Sbjct: 173 ANKED 177
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 20/202 (9%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
+ P Q + N+ YV NL + + ++K +F GT+ +++ G+++ F FV
Sbjct: 210 DNSPGQVKFNNV----YVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVN 265
Query: 126 MASPEEAQAAVNQ-----FDTQE-VSGRIIR-----VEFAKKFKKPRPQRSASAPARETQ 174
SP++A AV + FD +E GR + +E +KF+K A +
Sbjct: 266 FESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEK----NLQEAADKYQN 321
Query: 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234
LY+ NL V LRE F+ S KV+ +SN G S G GFV+F + E+A A++
Sbjct: 322 TNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSN-GVSRGSGFVAFKSAEDASRALA 380
Query: 235 SLDGKELMGRPLRLKFGQKNDD 256
++ K + +PL + Q+ +D
Sbjct: 381 EMNSKMVGSKPLYVALAQRKED 402
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKPEQTQKQN----IRR---- 79
+++ N+ SL Y N+ + + L T + KP + N +R+
Sbjct: 69 VRVCRDVNTRRSLGYAYVNYSSPADAARALEMLNFTPINGKPIRIMYSNRDPSLRKSGTA 128
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL S + + F G ++ ++ G+++ + FV E AQAA+++
Sbjct: 129 NIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKL 188
Query: 140 DTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ + + V F +K Q ++P + + +YV NLS L+E F
Sbjct: 189 NGMLMNDKKVYVGPFIRK------QERDNSPGQVKFNNVYVKNLSENTTEDDLKEIF-GK 241
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
F ++S VV +GRS +GFV+F + ++A A+ L+GK+
Sbjct: 242 FGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKF 284
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG-KNRNFAFVTMASPEEAQAAVNQF 139
LYV +L S A++ ++FA G VV V + + ++ +A+V +SP +A A+
Sbjct: 42 LYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEML 101
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IR+ ++ + P ++S +A +++ NL + + L + F
Sbjct: 102 NFTPINGKPIRIMYSN--RDPSLRKSGTA-------NIFIKNLDKSIDNKALYDTFCVFG 152
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238
N +S KV +++ G S GYGFV + E A+AAI L+G
Sbjct: 153 NILSCKVATDAS-GESKGYGFVQYERDEAAQAAIDKLNG 190
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V+ L + F+ VS +V + N RS GY +V++++ +A A+ L
Sbjct: 42 LYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEML 101
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + ++ + +S
Sbjct: 102 NFTPINGKPIRIMYSNRDPSLRKSG 126
>gi|317030432|ref|XP_001392545.2| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus niger CBS 513.88]
Length = 478
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG---GKNRNFAFVTMASPEEAQA 134
+R LYV L + +K +F G VV V+II K K N+ FV P A+
Sbjct: 90 KRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAER 149
Query: 135 AVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREF 194
A+ + + + IRV +A + S + ++V +LS +V L +
Sbjct: 150 AMQTLNGRRIHQSEIRVNWAYQ------SNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQA 203
Query: 195 FSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FSA F VS ++V+++ GRS GYGFV+F + +A+ A+SS+DG+ L R +R + +
Sbjct: 204 FSA-FGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQ 262
Query: 254 NDDVSESNKE 263
S S ++
Sbjct: 263 KGQPSISQQQ 272
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 36/184 (19%)
Query: 99 FAPCGTVVDVEII-KHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157
F+ G+V + ++ K G++R + FV +A A++ D + + R IR +A +
Sbjct: 204 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQK 263
Query: 158 KKPR-PQRSASAPARET----------------------------QHKLYVSNLSWKVRS 188
+P Q+ A A T Q YV NL+
Sbjct: 264 GQPSISQQQAMAAMGMTPTTAFGHHHFPTHGIQSYDMVVQQTPQWQTTCYVGNLTPYTTQ 323
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
T L F NF V E+ G+ F+ T E A AI L+G + GRPL+
Sbjct: 324 TDLVPLFQ-NFG-----YVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNVNGRPLKC 377
Query: 249 KFGQ 252
+G+
Sbjct: 378 SWGK 381
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
T +SG ++ A F + R+A P + LYV L +V L++ F +
Sbjct: 64 TSPMSGNMMSPTSAGGFVR----RAAPEPNKRA---LYVGGLDPRVTEDILKQIFETTGH 116
Query: 201 PVSSKVVFESNEGRSAG--YGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258
VS K++ + N+ S G YGFV F AE A+ +L+G+ + +R+ + +++
Sbjct: 117 VVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSN--- 173
Query: 259 ESNKEE 264
+NKE+
Sbjct: 174 STNKED 179
>gi|46121573|ref|XP_385341.1| hypothetical protein FG05165.1 [Gibberella zeae PH-1]
Length = 568
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
E P+ T+ + RR ++V L E+K F G V + +I+K + +++ +V
Sbjct: 165 EGNPQLTEDERDRRTVFVQQLAARLRTRELKEFFERVGPVNEAQIVKDRISQRSKGVGYV 224
Query: 125 TMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPR-PQRSASAPARETQHKLYVSN 181
+ E A+ Q Q++ G I++V A+K ++ R P+ S P H+LYV N
Sbjct: 225 EFKNEESVTQAL-QLTGQKLLGIPVIVQVTEAEKNRQARNPEASGPHPNSIPFHRLYVGN 283
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ + V L+ F F + + + GRS GYGFV F +A A+ ++G +L
Sbjct: 284 IHFNVTEQDLQAVFEP-FGELEFVQLQKDENGRSRGYGFVQFRDAGQAREALEKMNGFDL 342
Query: 242 MGRPLRLKFG 251
GRP+R+ G
Sbjct: 343 AGRPIRVGLG 352
>gi|393215302|gb|EJD00793.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 589
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 96/224 (42%), Gaps = 21/224 (9%)
Query: 37 SNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIK 96
S S PS + Q S Q+ + + ++V L W+ +
Sbjct: 293 STSAPSKKTKLANGDAAAQTSSDSQEDS--------------KTVFVGRLSWNVDNDWLA 338
Query: 97 NLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155
FA CG VV + + GK+R F FV A+ E A AAV +E+ GR + ++ K
Sbjct: 339 QEFADCGEVVSARVQMDRNTGKSRGFGFVEFATAEGANAAVALNGQKEIDGRAVNLD--K 396
Query: 156 KFKKP-RPQRSASAPARETQHK---LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN 211
KP P+R A A T L+V N+S+ + L E F+ S ++ + +
Sbjct: 397 TSAKPADPERRAKAFGDSTSAPSSVLFVGNVSFDMTEDGLWEVFAEYGEVKSVRLPTDRD 456
Query: 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
R GYG+V F E A+ A G ++ GR +RL + Q D
Sbjct: 457 TQRLKGYGYVEFVDVESAKKAFEGARGMDVGGRTIRLDYAQPRD 500
>gi|356519721|ref|XP_003528518.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 137
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 155 KKFKKPRPQRSA----SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210
K+F PQ S P+ + +KL+V LSW V L+E FS+ + +V++
Sbjct: 14 KRFHVSPPQTQCRFYCSPPSHASSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDK 73
Query: 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ GRS G+GFV F+ +++A+ A ++DGK L+GRPLR+ F
Sbjct: 74 DSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINF 113
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 54 LQVCSTLQDTTV----ETKPEQTQ--------KQNIRRKLYVFNLPWSFSVAEIKNLFAP 101
++ C TT+ P QTQ KL+V L WS +K F+
Sbjct: 1 MKKCVAFLATTIWKRFHVSPPQTQCRFYCSPPSHASSNKLFVGGLSWSVDHKSLKEAFSS 60
Query: 102 CGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
G V +V I+ K G++R F FV ++ ++A+ A + D + + GR +R+ FA
Sbjct: 61 FGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFA 114
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV P +A A+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 97 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKDMEQLFS 145
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 146 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 201
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 45/235 (19%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + S +++ LF+ G ++ I + G
Sbjct: 104 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGI 163
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFAKKFKKPRPQ-----------R 164
+R F+ EA+ A+ + Q+ G I V+FA + Q R
Sbjct: 164 SRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQTAAR 223
Query: 165 SASAPARETQHK----------------------------LYVSNLSWKVRSTHLREFFS 196
+ P + ++V NLS + + L + F
Sbjct: 224 RYTGPLHHQTQRFRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFG 283
Query: 197 ANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
F V++ KV+ + + G+GFV+ +EA AI+SL+G L R L++ F
Sbjct: 284 P-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 337
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S + +++ L V+ L + + F + S K+V + G+S GYGFV
Sbjct: 25 PVISTNGSTDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 84
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +A+ AI++L+G +L + +++ +
Sbjct: 85 NYVDPNDADKAINTLNGLKLQTKTIKVSY 113
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQF 139
L+V L W+ +K F G V+ +I + GK+R + +V + + A+ A+ +
Sbjct: 177 LFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEM 236
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRS----------ASAPARETQHKLYVSNLSWKVRST 189
+E+ GR I ++ + KP +S SAP+ L++ NLS+ +
Sbjct: 237 QGKEIDGRPINLDMSTG--KPHASKSNDRAKQFGDTPSAPS----DTLFIGNLSFNAQRD 290
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
+L E F + +S ++ + + G+G+V F++ +EA+AA+ +L+G+ + GR RL
Sbjct: 291 NLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRACRLD 350
Query: 250 FGQKNDDVS 258
F D+ +
Sbjct: 351 FSAPRDNAN 359
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
L+V LSW + L+ F + ++V+ E + G+S GYG+V F K+ AE A+ +
Sbjct: 177 LFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEM 236
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
GKE+ GRP+ L S+SN + + SA S
Sbjct: 237 QGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDTPSAPS 275
>gi|156373168|ref|XP_001629405.1| predicted protein [Nematostella vectensis]
gi|156216405|gb|EDO37342.1| predicted protein [Nematostella vectensis]
Length = 817
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
RK+++ NL +S + +++ F+ G V+DV I+K+ G+++ +A+V + QAA+
Sbjct: 601 RKVFISNLLFSITEDHLRDKFSKLGEVLDVRIVKNMAGRSKGYAYVEFNNESTVQAAL-A 659
Query: 139 FDTQEVSGRIIRVE-FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
D +++ GR + + K K P + P +H L+VSNL + + + + E FS
Sbjct: 660 MDREKMEGRPMFISPCVDKAKNP---TTFKFPTSLDKHTLFVSNLPFDAKESEIEELFSK 716
Query: 198 NFNPVSSKVVFESNE-GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
+ V +V +N G+ GYG+V + + A A+ +LD E+ GR +
Sbjct: 717 --HGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTI 764
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NLP+ +EI+ LF+ G V V ++ ++ GK + + +V A AV D
Sbjct: 696 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 755
Query: 141 TQEVSGRIIRVEFA 154
EV GR I V +
Sbjct: 756 KTEVKGRTISVALS 769
>gi|449514035|ref|XP_002190678.2| PREDICTED: ELAV-like protein 2-like [Taeniopygia guttata]
Length = 380
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E+K+LF G + ++++ K G + + FV P++A+ AV
Sbjct: 66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGPSLGYGFVNYVDPKDAKKAV 125
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A R +SA R+ LYVS L + T L + FS
Sbjct: 126 NTLNGFRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQTELEQLFS 174
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
+ ++S+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 175 QYGHIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPVTVKF 230
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 107/276 (38%), Gaps = 57/276 (20%)
Query: 32 KLLHSSNSTPSLSY---NFPTRNLCLQVCSTL-----QDTTVETKPEQTQKQNIRR-KLY 82
KL+ + PSL Y N+ + +TL Q T++ + +IR LY
Sbjct: 97 KLVRDKITGPSLGYGFVNYVDPKDAKKAVNTLNGFRLQTKTIKVSYARPSSASIRDANLY 156
Query: 83 VFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQFDT 141
V LP + + E++ LF+ G ++ I + G +R F+ EA+ A+ +
Sbjct: 157 VSGLPKTMTQTELEQLFSQYGHIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 142 QEVSGRI--IRVEFA----KKFKKPRPQRSASAPARETQHK------------------- 176
Q+ G + V+FA +K + P R AP + +
Sbjct: 217 QKPPGATEPVTVKFANNPSQKTNQATPNRRYPAPLAQQAQRFRLDNLLNIAYGVKRFPPM 276
Query: 177 ----------------------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
++V NL+ + L + F + KV+ + N +
Sbjct: 277 TIDGMTALAGINISGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNK 336
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
G+GFV+ +EA AI+SL+G L R L++ F
Sbjct: 337 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + +F P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 299 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 140 DTQEVSGRIIRVEF-AKKFKKP 160
+ + R+++V F K KP
Sbjct: 359 NGYRLGDRVLQVSFKTNKTHKP 380
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P S +++ L V+ L + L+ F + S K+V + G S GYGFV
Sbjct: 54 PSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGPSLGYGFV 113
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
++ ++A+ A+++L+G L + +++ + +
Sbjct: 114 NYVDPKDAKKAVNTLNGFRLQTKTIKVSYAR 144
>gi|325183203|emb|CCA17661.1| nucleolin putative [Albugo laibachii Nc14]
Length = 701
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 69 PEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS 128
P+ T+K I Y+ LPW + A+++ F CGTV +++ G+ A + +
Sbjct: 430 PKSTEKVEI----YILGLPWEATEAQVRERFESCGTVEHIDMQTQGDGRPSGKARIRFSC 485
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
EA+AA+ + D + GR ++++ A + + +P+ +A +V NL W
Sbjct: 486 ASEAEAAL-ELDGSDFGGRWLKIQLANEILE-KPENCTTA---------FVGNLPWDADD 534
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+ EFFS +++ + G G G+V F + E A+ AI L+G + GR LR+
Sbjct: 535 NSVCEFFSQCGEIGECRLLSDRETGEFRGIGYVEFTSTEAADEAIK-LNGADFNGRSLRI 593
Query: 249 KFG---QKNDD 256
+ Q+ND+
Sbjct: 594 NYAKQRQQNDE 604
>gi|400597074|gb|EJP64818.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 769
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 103/213 (48%), Gaps = 29/213 (13%)
Query: 78 RRKLYVFNLPWSF---SVAEIKNLFAPC--GTVVDVEIIKHKGGKNRNFAFVTMASPEEA 132
RR L+V +LP + S+AE + + P TVV I + ++R F FVT+A ++A
Sbjct: 41 RRSLFVRSLPPNVTNESLAEFFSEYFPVKHATVV----IDQQTKESRGFGFVTLADADDA 96
Query: 133 QAAVNQFDTQEVSGRIIRVEFAKKFKK------PRPQRSASAPARETQHKLYVSNLSWKV 186
+ A FD + R IRVE A+ ++ +P++ P E KL V NL W +
Sbjct: 97 KQAQIVFDKKRWEDRTIRVEVAEPRQRKEATEGAQPRQKPGKPEFEPTPKLIVRNLPWSI 156
Query: 187 R-STHLREFFSANFNPVSSKVVFES---NEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
R S L F + KV F N+G+ G+GFV+ K+ AE A+ ++GKE+
Sbjct: 157 RNSEQLGHLFRS-----YGKVKFADLPKNKGKLKGFGFVTLRGKKNAEKALEGINGKEID 211
Query: 243 GRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
GR L + + V + E+ E + ES
Sbjct: 212 GRTLAVDWA-----VDKDTWEQRQAGEGKEGES 239
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 165 SASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
+A AP + E + L+V +L V + L EFFS F + VV + S G+GFV
Sbjct: 29 AAPAPKKARTEERRSLFVRSLPPNVTNESLAEFFSEYFPVKHATVVIDQQTKESRGFGFV 88
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ A ++A+ A D K R +R++ +
Sbjct: 89 TLADADDAKQAQIVFDKKRWEDRTIRVEVAE 119
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
++V NL + HL+ FFS+ N ++VV + R AG FV F +E+A+ I
Sbjct: 321 IFVRNLPFTTNDEHLKSFFSSFGNVRYARVVMDKATDRPAGTAFVCFYQEEDAKTCIKG 379
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LY+ NLP + E+ +F G + + + GK+R F FV + E A AV+
Sbjct: 267 LYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALH 326
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
++ G ++ V A+K R +R A Q K LYV NL +
Sbjct: 327 DKDYKGNVLYVARAQK----RTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDE 382
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+ F+ F ++S V + +G S G+GFV F++ +EA A++ ++GK L +PL +
Sbjct: 383 KLQNEFTP-FGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVS 441
Query: 250 FGQKND 255
Q+ +
Sbjct: 442 LAQRKE 447
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 9/196 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + FA G ++ ++ + G ++ + FV + E A+AA+ +
Sbjct: 174 IFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVN 233
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-HKLYVSNLSWKVRSTHLREFFSANF 199
+++ +++ V PR R A +Q LY+ NL + + L E F F
Sbjct: 234 GMQLNDKVVFV----GIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVF-GKF 288
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSE 259
P++S V G+ G+GFV++ E A A+ +L K+ G L + QK +E
Sbjct: 289 GPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKR---TE 345
Query: 260 SNKEEEDVSEDQSAES 275
+ E + E Q E+
Sbjct: 346 RDAELKKAHEQQKYET 361
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFAT 225
++PA + LYV L V L E FS PV+S +V ++ RS GY +V++
Sbjct: 76 ASPASQPNTSLYVGELDPTVTEAMLYEIFSM-IGPVASIRVCRDAVTRRSLGYAYVNYLN 134
Query: 226 KEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNK 262
+AE A+ L+ + + R+ + Q++ + ++ +
Sbjct: 135 AADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQ 171
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
++V NL + EIK F+ G + +V I+K + K++ F FV PE A+AAV +
Sbjct: 218 VFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMN 277
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK------LYVSNLSWKVRSTHLR 192
++ R I V A+K K R Q R R Q + LYV NL + L+
Sbjct: 278 NSQLGSRTIYVGRAQK-KAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 336
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ FS N S+KV+ +G S G+GFV F + EEA A + +G + G+P+ + Q
Sbjct: 337 QEFSRYGNITSAKVM-RDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQ 395
Query: 253 KND 255
+ +
Sbjct: 396 RKE 398
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + ++ +F+ G V V + + ++ + +V +S +A A+
Sbjct: 40 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 99
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ ++G+ IR+ ++ + P ++S +++ NL + + L + F A F
Sbjct: 100 NYTPINGKTIRIMWSHR--DPSTRKSGVG-------NIFIKNLDESIDNKALHDTFIA-F 149
Query: 200 NPV-SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDV 257
P+ S K+ + +GRS GYGFV F T E A AI ++G +L+G+ + + KF +++D +
Sbjct: 150 GPILSCKIAHQ--DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRL 207
Query: 258 SESNK 262
+ + +
Sbjct: 208 AATGE 212
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 8/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
++V NL S + E+KN F GT+ +++ GK++ F FV + ++A AV
Sbjct: 212 VFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 271
Query: 137 -NQFDTQE--VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
FD +E V + E + K+ Q A + LYV NL + L+E
Sbjct: 272 GKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKE 331
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS F ++S V G S G GFV+F+T EEA A+ ++GK ++ +PL + Q+
Sbjct: 332 LFSP-FGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQR 390
Query: 254 NDD 256
+D
Sbjct: 391 KED 393
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQ 133
Q + LYV +L + + A++ +LF G VV V + + ++ + +V ++P++A
Sbjct: 27 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAA 86
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
A++ + ++ R IR+ ++ + R + Q +++ NL + L +
Sbjct: 87 RALDVLNFTPLNNRPIRIMYSHRDPSIR---------KSGQGNIFIKNLDRAIDHKALHD 137
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
FS N +S KV +S+ G+S GYGFV F +E A+ AI L+G L
Sbjct: 138 TFSTFGNILSCKVATDSS-GQSKGYGFVQFDNEESAQKAIEKLNGMLL 184
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ + FV + E AQ A+ + +
Sbjct: 121 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN 180
Query: 141 TQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
++ + + V F +K Q SA + + ++V NLS L+ F F
Sbjct: 181 GMLLNDKQVYVGPFLRK------QERESAADKAKFNNVFVKNLSESTTDDELKNTF-GEF 233
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239
++S VV +G+S +GFV+F ++A A+ +L+GK
Sbjct: 234 GTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGK 273
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L + F+ VS +V + RS GYG+V+F+ ++A A+ L
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 92
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ L RP+R+ + ++ + +S +
Sbjct: 93 NFTPLNNRPIRIMYSHRDPSIRKSGQ 118
>gi|408394044|gb|EKJ73300.1| hypothetical protein FPSE_06565 [Fusarium pseudograminearum CS3096]
Length = 568
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFV 124
E P+ T+ + RR ++V L E+K F G V + +I+K + +++ +V
Sbjct: 165 EGNPQLTEDERDRRTVFVQQLAARLRTRELKEFFERVGPVNEAQIVKDRISQRSKGVGYV 224
Query: 125 TMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPR-PQRSASAPARETQHKLYVSN 181
+ E A+ Q Q++ G I++V A+K ++ R P+ S P H+LYV N
Sbjct: 225 EFKNEESVTQAL-QLTGQKLLGIPVIVQVTEAEKNRQARNPEASGPHPNSIPFHRLYVGN 283
Query: 182 LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+ + V L+ F F + + + GRS GYGFV F +A A+ ++G +L
Sbjct: 284 IHFNVTEQDLQAVFEP-FGELEFVQLQKDENGRSRGYGFVQFRDAGQAREALEKMNGFDL 342
Query: 242 MGRPLRLKFG 251
GRP+R+ G
Sbjct: 343 AGRPIRVGLG 352
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,076,614,065
Number of Sequences: 23463169
Number of extensions: 161890803
Number of successful extensions: 541256
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13622
Number of HSP's successfully gapped in prelim test: 9991
Number of HSP's that attempted gapping in prelim test: 475730
Number of HSP's gapped (non-prelim): 53895
length of query: 275
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 135
effective length of database: 9,074,351,707
effective search space: 1225037480445
effective search space used: 1225037480445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)