BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044184
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 114/183 (62%), Gaps = 10/183 (5%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
+LYV NLP+S + +++ +FA GTV +VEI+ + ++R FAFVTM S EEA+ A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HKLYVSNLSWKVRSTHL 191
FD +V GR ++V F + + + SA R T HKLYV+NLSW + S L
Sbjct: 175 FDGSQVGGRTVKVNF-PEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGL 233
Query: 192 REFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF- 250
R+ F+ +S+KV+++ + GRS G+GF++F++ E +A+ +++ EL GRPLRL
Sbjct: 234 RDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
Query: 251 GQK 253
GQK
Sbjct: 294 GQK 296
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 28/226 (12%)
Query: 47 FPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
F TR + L L+D VE + +++ KL+V NLP+S A + LF G V
Sbjct: 60 FSTR-VALSDFDQLEDD-VEVAEQPRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVE 115
Query: 107 DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF----AKK----F 157
VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV AK+ F
Sbjct: 116 IVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 175
Query: 158 KKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPV 202
R S+ R+ + +++YV NLSW V L+E FS N V
Sbjct: 176 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 235
Query: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R+
Sbjct: 236 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRV 281
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 28/226 (12%)
Query: 47 FPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106
F TR + L L+D VE + +++ KL+V NLP+S A + LF G V
Sbjct: 59 FSTR-VALSGFDQLEDD-VEVAEQPRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVE 114
Query: 107 DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF----AKK----F 157
VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV AK+ F
Sbjct: 115 MVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 174
Query: 158 KKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPV 202
R S+ R+ + +++YV NLSW V L+E FS N V
Sbjct: 175 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 234
Query: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R+
Sbjct: 235 DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRV 280
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L F N +V+++ GRS G+GFV+ +TKEE EAA
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 236 LDGKELMGRPLRLKFG 251
+G E+ GR +R+ G
Sbjct: 148 FNGYEIDGRAIRVNAG 163
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 15/179 (8%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NLP+S A + LF G V VE+I K G++R F FVTM+S EE +AA Q
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQR---------SASAPARETQHKLYVSNLSWKVRST 189
F+ E+ GR +RV P P++ S + ++ +++YV NL+W V
Sbjct: 148 FNGYELDGRALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQD 202
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L GR +R+
Sbjct: 203 ALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W ++ LF+ G VVD +++ + G++R F FVT +S EE A+
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D +++GR IRV A+ + PR Q
Sbjct: 249 LDGVDLNGRAIRVSPAEA-RPPRRQ 272
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + S L E F N +V+++ GRS G+GFV+ ++KEE EAA
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GR LR+ G
Sbjct: 148 FNGYELDGRALRVNSG 163
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFS 196
++ +V+GR++ V A + + RP+R P R E +++YV N+ W + L + FS
Sbjct: 197 YNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFS 251
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ VS++VV++ GRS G+GFV+ A++ E AI++LDG+ L GR +R+ +
Sbjct: 252 EHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 21/185 (11%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
K++V NL +S A + LF G V VE+I K G++R F FVTM+S EE +AA Q
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ---------------HKLYVSNLS 183
F+ E+ GR +RV P P++ ++ RE +++YV NL+
Sbjct: 148 FNGYELDGRALRVN-----SGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLA 202
Query: 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
W V L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L G
Sbjct: 203 WGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNG 262
Query: 244 RPLRL 248
R +R+
Sbjct: 263 RAIRV 267
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W ++ LF+ G VVD +++ + G++R F FVT +S EE A+
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D +++GR IRV A+ + PR Q
Sbjct: 255 LDGVDLNGRAIRVSPAEA-RPPRRQ 278
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
K++V NL + S L E F N +V+++ GRS G+GFV+ ++KEE EAA
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GR LR+ G
Sbjct: 148 FNGYELDGRALRVNSG 163
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 30/230 (13%)
Query: 45 YNFPTRNLCLQVCSTLQ-----DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLF 99
+N P V T + D + P + Q + KL+V NLP++ A++ LF
Sbjct: 52 WNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLF 111
Query: 100 APCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158
G V VE+I K G++R F FVTM+S E +AA QF+ E+ GR +RV
Sbjct: 112 ESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGP--- 168
Query: 159 KPRPQRS---ASAP-----------------ARETQHKLYVSNLSWKVRSTHLREFFSAN 198
P P+R + P + +++YV NLSW V L FS
Sbjct: 169 -PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQ 227
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
V ++V+++ + GRS G+GFV++ + +E + AI SLDG +L GR +R+
Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
KL+V NL + V S L + F + N +V+++ GRS G+GFV+ ++ E EAA
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 236 LDGKELMGRPLRLKFG 251
+G EL GRPLR+ G
Sbjct: 152 FNGYELDGRPLRVNAG 167
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
++YV NL W +++LF+ G VV+ +I + G+++ F FVT S +E Q A+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQ 163
D ++ GR IRV A+ + PR Q
Sbjct: 265 LDGADLDGRQIRVSEAEA-RPPRRQ 288
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSA 197
F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS
Sbjct: 211 FNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
P + KL+V NL++ V S L F ++V++ +S G+GFV+ ++ +E
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 229 AEAAISSLDGKELMGRPL 246
AE A+ + +L GR L
Sbjct: 204 AETAVEKFNRYDLNGRLL 221
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 103/181 (56%), Gaps = 6/181 (3%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E+ Q+ + KL+V NLP+ + LF G V E+I ++ ++R F FVTM++
Sbjct: 88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMST 147
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVR 187
EEA AV + +++GR++ V A PR R AP + +++YV N+ W +
Sbjct: 148 VEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDID 203
Query: 188 STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247
L + FS + VS++VVF+ GRS G+GFV+ +++ E AI++LDG+ L GR +R
Sbjct: 204 DARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 263
Query: 248 L 248
+
Sbjct: 264 V 264
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQ 138
KL+V NLP+ ++ +F G V E+I ++ ++R F FVTM++ EEA+ AV
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ GR + V K + P+R+ E ++YV NL W V ++ L + FS +
Sbjct: 116 LNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEH 172
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
VS++VV + GRS G+GFV+ +++ E AI++LDG+ L GR +R+ ++
Sbjct: 173 GKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137
R+LYV N+P + + E++ + G + E++ K G++R F FVTM + E+A A +
Sbjct: 84 RRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143
Query: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-----HKLYVSNLSWKVRSTHLR 192
+ + E+ GR I+V +K A+ A ++Q +K+Y+ NL+ V + L+
Sbjct: 144 KLNDTEIGGRKIKVNITEK--PLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLK 201
Query: 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
+FFS + +KV +S G+GFVSF+++EE EAAI +L+ L G+ +R+
Sbjct: 202 DFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231
E +LYV N+ + + LR + ++V+++ GRS +GFV+ T E+A A
Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 232 AISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 275
I L+ E+ GR +++ +++E E D++ Q+ +S
Sbjct: 141 VIEKLNDTEIGGRKIKV-------NITEKPLEGMDIATTQAEDS 177
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP +++LF+ G ++ V++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EVSGR++ RVE + K+ Q R LYV NL + LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ ++ + G +R F FV + E AQ A+N +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F FK R +R A AR + +YV NL V L++ FS F
Sbjct: 160 GMLLNDRKV---FVGHFKS-RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + L G+P+R+ + Q++ + +S
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSG 97
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R LYV NL + + +K F G + +++I+ K KN N+AFV +A A+
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 134
Query: 139 FDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ +++ I+++ +A F+ Q+S+S + L+V +L+ V LR F
Sbjct: 135 LNGKQIENNIVKINWA--FQS---QQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDF 185
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255
+ +S V+++ G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ + K D
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 170 ARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228
RET + LYV NL + L+++F + K++ + N ++ Y FV + +
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHD 127
Query: 229 AEAAISSLDGKELMGRPLRLKF 250
A A+ +L+GK++ +++ +
Sbjct: 128 ANIALQTLNGKQIENNIVKINW 149
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF+ G + V++++ GK++ F FV+ E+A AV + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+E+SG+II V E +KF++ + +R +R LY+ NL +
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI----SRYQGVNLYIKNLDDTIDDE 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS + S+KV+ E +GRS G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ +AFV + E A A+ + +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A A+ + +Y+ N +V L+E FS
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ + N G+S G+GFVS+ E+A A+ ++GKE+ G+ + + QK
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G V+ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPIRIMWSQR--DPSLRKSGVG-------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GY FV F T+E A+ AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ +++ E + LFAP G + + + K GK++ F FV E A AV + +
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 141 TQEVSGRIIRVEFAKKFKKP----RPQRSASAPARETQHK---LYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K ++ + Q A + ++++ L+V NL ++ S L E
Sbjct: 310 DKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEE 369
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V + G+S G+GFV F+T EEA AI+ ++ + + G+PL + Q+
Sbjct: 370 EFKP-FGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQR 428
Query: 254 ND 255
D
Sbjct: 429 KD 430
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+ +
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V GR R+ ++ QR SA R +++ NL + + L + FSA F
Sbjct: 129 NYTPVEGRPCRIMWS--------QRDPSA-RRSGDGNIFIKNLHPAIDNKALHDTFSA-F 178
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G+S +GFV + T+E A+AAI S++G L R
Sbjct: 179 GKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDR 223
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++ S+ E LYV L+ V L E FS S +V ++ +S GY +V+
Sbjct: 55 EQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVN 114
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ E+ E AI L+ + GRP R+ + Q++
Sbjct: 115 YHKLEDGEKAIEELNYTPVEGRPCRIMWSQRD 146
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K +F+ G + V+++ G++R F FV + EEAQ AV + +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+GR++ V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERI----NRYQGVNLYVKNLDDGIDDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ +S KVV +E S GYGFV F T+E A AI +++G L R
Sbjct: 124 DILSCKVV--CDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 68 KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127
K + +K+ R L+V N+P+S +V E++ +F D+ I K G N+ A+V +
Sbjct: 314 KTAENKKERDSRTLFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFS 370
Query: 128 SPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKV 186
+ +EA A+ + E+ GR I V+F + + Q S + E K L V+NLS+
Sbjct: 371 NEDEANKALEEKQGAEIEGRSIFVDFTGE----KSQNSGNKKGPEGDSKVLVVNNLSYSA 426
Query: 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
LRE F ++ + N+GR+ G+ F+ F++ E+A+ A+ S + E+ GR +
Sbjct: 427 TEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSI 481
Query: 247 RLKF 250
RL+F
Sbjct: 482 RLEF 485
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L V NL +S + ++ +F ++ I G+ + FAF+ +S E+A+ A++ +
Sbjct: 417 LVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIEFSSAEDAKDAMDSCN 472
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
E+ GR IR+EF++ R SA ++ L+V LS L+E F + N
Sbjct: 473 NTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT----LFVRGLSEDTTEETLKEAFDGSVN 528
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
+++V + + G S G+GFV F+T E+A+AA +++ E+ G + L F + D
Sbjct: 529 ---ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 177 LYVSNLS----WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
+++ NL+ + LREFFS + + G S +G+V F+++EE E A
Sbjct: 235 IFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRI-----GNSKKFGYVDFSSEEEVEKA 289
Query: 233 ISSLDGKELMGRPLRL 248
+ L GK+++G +++
Sbjct: 290 L-KLTGKKILGTEVKI 304
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + I + + N+A+V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S ++V NL + + L + SA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S VV + N S GYGFV F T E AE AI ++G L GR
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S ++ + S+ Y +V+F ++AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+GR+I V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERI----NRYQGVNLYVKNLDDGIDDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + + +A++ P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T+E A AI +++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +++F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K K+ Q R LYV NL + LR+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+ + +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKF 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+EV+GR+I V E +KF++ + +R R LYV NL +
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERI----NRYQGVNLYVKNLDDGIDDD 308
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR+ F S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL +
Sbjct: 309 RLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 367 LAQRKEE 373
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQF 139
LY+ +L + A + F+P G ++ + + + + ++A++ P +A+ A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + + GR IR+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFEVIKGRPIRIMWSQR--DPGLRKSGVG-------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV +E S GYGFV F T E A AI +++G L R
Sbjct: 124 NILSCKVV--CDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY+ +L V L E FS +S +V + RS Y +++F +AE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + + GRP+R+ + Q++ + +S
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ +S ++K LF P G + + + K GK++ F FV E A AV + +
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELN 294
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K KK ++ L++ NL + S L E
Sbjct: 295 DKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEE 354
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F++ EEA AI+ ++ + G+PL + Q+
Sbjct: 355 EFKP-FGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQR 413
Query: 254 ND 255
D
Sbjct: 414 KD 415
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+ +
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ +++ + P +RS +++ NL + + L + FS F
Sbjct: 114 NYSPIEGRPCRIMWSQ--RDPSARRSGDG-------NIFIKNLHPAIDNKALHDTFST-F 163
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G+S +GFV + T E AEAAI +++G L R
Sbjct: 164 GKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 208
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 88/184 (47%), Gaps = 4/184 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ G+++ F FV + E A+AA+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVN 201
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F K + + S + +YV N+ + L++ F+ +
Sbjct: 202 GMLLNDREV---FVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTP-YG 257
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260
++S + + EG+S G+GFV++ E A A+ L+ KE+ G+ + + QK + E
Sbjct: 258 AITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEE 317
Query: 261 NKEE 264
K++
Sbjct: 318 LKKQ 321
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
SA E+ LYV L+ V L E FS S +V ++ +S GY +V++
Sbjct: 44 SANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKM 103
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKN 254
E+ E AI L+ + GRP R+ + Q++
Sbjct: 104 EDGEKAIEELNYSPIEGRPCRIMWSQRD 131
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV N+ ++S + LF+P G + + + K + GK++ F FV E A AV + +
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K KK A+ L+V NL + S L E
Sbjct: 295 DKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEE 354
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F T EEA AI+ ++ + + G+PL + Q+
Sbjct: 355 EFKP-FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQR 413
Query: 254 ND 255
D
Sbjct: 414 KD 415
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL + +++ F P GT+ +++ + GK++ F FV +PEEA A+ + +
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMN 397
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
T+ ++G+ + V A++ R Q AR
Sbjct: 398 TRMINGKPLYVALAQRKDVRRSQLEQQIQAR 428
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+ +
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++ QR SA R +++ NL + + L + FSA F
Sbjct: 114 NYNPIEGRPCRIMWS--------QRDPSA-RRSGDGNIFIKNLHPAIDNKALHDTFSA-F 163
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V G+S +GFV + T E AEAAI +++G L R
Sbjct: 164 GKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 208
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + + F+ G ++ ++ + G+++ F FV + E A+AA+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVN 201
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ R + F K + + S + +YV N+ + FS F
Sbjct: 202 GMLLNDREV---FVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSP-FG 257
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
++S + + +G+S G+GFV+F E A A+ L+ KE+ G+ + + QK
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 163 QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222
++ S+ E LYV L+ V L E FS S +V ++ +S GY +V+
Sbjct: 40 EQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVN 99
Query: 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
+ E+ E AI L+ + GRP R+ + Q++
Sbjct: 100 YHKYEDGEKAIEELNYNPIEGRPCRIMWSQRD 131
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ NL + E +LF G + + ++K + K R F FV A+ E AQ AV++ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-----------LYVSNLSWKVRST 189
+E G+ + V A+K + +R R Q K L++ NL +V
Sbjct: 323 DKEYKGKKLYVGRAQK----KHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+ FSA F ++S + +G+S G+GFV + T EEA A++ ++ + L G+PL +
Sbjct: 379 RLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 250 FGQKND 255
Q+ +
Sbjct: 438 LAQRKE 443
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + LF G V + + + ++ +A+V + E+ + A+++
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ ++++ R + + +++ NL + + L + FSA
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGN---------VFIKNLDPAIDNKALHDTFSAFG 192
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + G + GYGFV F + E A AAI ++G L
Sbjct: 193 KILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL +K F+ GT+ +I+ + GK++ F FV +PEEA AV + +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ ++G+ + V A++ + R Q A AR
Sbjct: 426 QRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 456
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSF 223
S +AP T LYV L V L E F++ PV+S +V ++ RS GY +V+F
Sbjct: 73 SGTAP---TSASLYVGELDPSVTEAMLFELFNS-IGPVASIRVCRDAVTRRSLGYAYVNF 128
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
E+ E A+ L+ + GRP R+ + Q++
Sbjct: 129 HNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP + E+K F G + ++K + G +R+F FV SPE A AV + +
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 301 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRF----EKLQGSNLYLKNLDDSVNDE 356
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N S KV+ S +G S G+GFV+++ EEA A+ ++GK + +PL +
Sbjct: 357 KLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 250 FGQKNDD 256
Q+ ++
Sbjct: 416 LAQRKEE 422
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV +L S + + + +LF V ++ + + ++ +A+V A+PE+A A+ +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 120
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
+ R IR+ + + P + S +++ NL + + L E FS+
Sbjct: 121 YAPIRDRPIRIMLSN--RDPSTRLSGKG-------NVFIKNLDASIDNKALYETFSSFGT 171
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
+S KV + GRS GYGFV F +E A+AAI L+G L
Sbjct: 172 ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL 211
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 36 SSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEI 95
+S + SL+Y P R+ +++ + +D + + K N+ ++ NL S +
Sbjct: 112 ASRAMESLNYA-PIRDRPIRIMLSNRDPSTRL----SGKGNV----FIKNLDASIDNKAL 162
Query: 96 KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFA 154
F+ GT++ ++ G+++ + FV E AQAA+++ + ++ + + V F
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR 214
++ + R + S + P+ +YV NL ++ L++ F + +SS VV + G
Sbjct: 223 RRQDRARSE-SGAVPSFTN---VYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGN 277
Query: 215 SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
S +GFV+F + E A A+ ++G L L + QK +S++EEE
Sbjct: 278 SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK-----KSDREEE 323
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V +HL + F+ PV + V RS GY +V+FA E+A A+ SL
Sbjct: 61 LYVGDLDPSVNESHLLDLFN-QVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ + RP+R+ ++ S K
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGK 145
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 24/218 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
L+V NL + ++ N F+ G + ++ + + G+NR + FVT + E+AQ A +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-----QHKLYVSNLSWKVRS-THLRE 193
+++ GRI+R++FA K+ + ++T + +L + NL W ++ HL
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
FS F V + GR G+ FV ++ AE A++SL+G E+ GRP+ + +
Sbjct: 127 HFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVS 185
Query: 254 ND-----DVSESNKEEED-----------VSEDQSAES 275
D + +++ EEE+ V+ED SA+S
Sbjct: 186 KDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADS 223
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 62 DTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAE-IKNLFAPCGTVVDVEIIKHKGGKNRN 120
DT ++T +Q+ R +L + NLPWS + ++ F+ G V +++I GG+
Sbjct: 90 DTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCG 149
Query: 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154
FAFV M + A+ A+N + E+ GR I V++A
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y N+ FS E K LF G + + + K GK++ F FV + E A AV++ +
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELN 293
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E++G+ I V A+K KK ++ L++ NL + S L E
Sbjct: 294 DKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEE 353
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+
Sbjct: 354 EFKP-FGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQR 412
Query: 254 ND 255
D
Sbjct: 413 KD 414
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L++ NL + +++ F P G++ ++ + GK++ F FV +SPEEA A+ + +
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMN 396
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ + G+ + V A++ R Q AR
Sbjct: 397 QRMIYGKPLYVALAQRKDVRRSQLEQQIQAR 427
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
SA +T LYV L+ V L E FS S +V ++ +S GY +V+F
Sbjct: 43 SAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKF 102
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKN 254
E+ E AI L+ + GRP R+ + Q++
Sbjct: 103 EDGEKAIEDLNYSLIEGRPCRIMWSQRD 130
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 31 IKLLHSSNSTPSLSY---NFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRR 79
I++ + + SL Y NF + L + +E +P + + ++N
Sbjct: 80 IRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDG 139
Query: 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139
+++ NL + + + F G ++ ++ G ++ F FV + E A+AA+
Sbjct: 140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENV 199
Query: 140 DTQEVSGRIIRVEFAKKF-KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198
+ ++ R + V K KK R + A T +Y N+ ++ F A
Sbjct: 200 NGMLLNDREVYV--GKHISKKDRESKFEEMKANFTN--VYAKNIDLDFSEEEFKKLFEA- 254
Query: 199 FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+ ++S + + +EG+S G+GFV+F E A A+ L+ KE+ G+ + + QK
Sbjct: 255 YGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQK 309
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V E+ + A+
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR R+ +++ + P +R+ +++ NL + + L + F+A F
Sbjct: 113 NYSLIEGRPCRIMWSQ--RDPSLRRNGDG-------NIFIKNLHPAIDNKALHDTFTA-F 162
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V + G S +GFV + T E AEAAI +++G L R
Sbjct: 163 GKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDR 207
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K F G + V+++ GK+R F FV+ E+AQ AV+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ I +VE + K+ Q R LYV NL + LR+
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F+ + S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 102/193 (52%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E+F
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYG 215
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
+S KV+ + + G+S G+GFVSF E+A+ A+ ++GK+L G+ + + QK + +
Sbjct: 216 AALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ +R+ ++++ P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGKPVRIMWSQR--DPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + G+P+R+ + Q++ + +S
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 66 ETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVT 125
E + E +K + +YV N F ++K F P G + +++ + GK++ F FV
Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVA 229
Query: 126 MASPEEAQAAVNQFDTQEVS-GRIIRVEFAKKFKKPRPQRSASAPARETQHK-------- 176
+ E A+AAV + +++ G+ + V A+ KK Q+ E + K
Sbjct: 230 FETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGV 287
Query: 177 -LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV NL + LR FS N S+KV+ + EGRS G+GFV F EA A++
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTE 346
Query: 236 LDGKELMGRPLRLKFGQKNDD 256
L+G+ + +PL + Q+ ++
Sbjct: 347 LNGRVVGSKPLYVALAQRKEE 367
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +LP + + + + F+ G V+ + + + ++ +A+V P +A+ A++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V + IR+ ++++ P +RS +++ NL + + + + FSA
Sbjct: 64 NFDLVRNKPIRIMWSQR--DPSLRRSGVG-------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KV + +G S GYGFV F T+E A +I ++G L G+
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V + L + FS+ +S +V + RS GY +V+F +AE A+ ++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + +P+R+ + Q++ + S
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSG 88
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 36/209 (17%)
Query: 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138
R+L+V NLP++ ++K+LF G+V+ +I ++ G++R V M+S +EA A+
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQM 238
Query: 139 FDTQEVSGRIIRVE---FAKKFKKPR----------------------PQRSASAPARET 173
+ GR + V FA KP P A+ +
Sbjct: 239 LHNTDFMGRTLEVRLDRFAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQVEDL 298
Query: 174 QHK----------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
+ +YV NL W +L + F+ + + +++ +E GRS G+G V F
Sbjct: 299 VYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPT-GRSKGFGVVQF 357
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
+ +A ++I L+G GRPL+L +
Sbjct: 358 ENENDAASSIEKLNGYRYGGRPLQLSYAH 386
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 10/207 (4%)
Query: 50 RNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE 109
R L T +D + + TQ++ R++YV NL + E+K G V++ E
Sbjct: 51 RGLHFDGEHTERDPHLGNGQKYTQQE---RRVYVGNLSYQVRWFELKEFMGQVGNVLNCE 107
Query: 110 IIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV----EFAKKFKKPRPQRS 165
I+ G ++ A + ++ EEA+ A+ Q+ GR++ + E +F S
Sbjct: 108 ILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPS 167
Query: 166 ASAPARETQ--HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223
AS+ ++++ +L+V NL + VR L++ F + + + + + EGRS G G V
Sbjct: 168 ASSNGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQM-NQEGRSRGIGIVVM 226
Query: 224 ATKEEAEAAISSLDGKELMGRPLRLKF 250
++ +EA AI L + MGR L ++
Sbjct: 227 SSMKEAMHAIQMLHNTDFMGRTLEVRL 253
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV---- 136
+YV NL S + ++KN F G + ++K GK++ F FV + ++A AV
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 137 -NQFDTQE-VSGRI---------IRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
++FD +E GR +RV + + K+ A + LYV NL
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE--------AADKFQSSNLYVKNLDPS 328
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ L+E FS F V+S V G S G GFV+FAT EEA A+S L GK + +P
Sbjct: 329 ISDEKLKEIFSP-FGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKP 387
Query: 246 LRLKFGQKNDD 256
L + Q+ +D
Sbjct: 388 LYVAIAQRKED 398
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 11/162 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L ++ + +++ + F GTVV V + + ++ + +V +P++A A+ +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IRV ++ + P +RS + +++ NL + L + FS+
Sbjct: 98 NYIPLYGKPIRVMYSHR--DPSVRRSGAG-------NIFIKNLDESIDHKALHDTFSSFG 148
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241
N VS KV +S+ G+S GYGFV +A +E A+ AI L+G L
Sbjct: 149 NIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLL 189
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L + V + L + F V+ +V + RS GYG+V+F ++A AI L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ L G+P+R+ + ++ V S
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSG 122
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N + +K +F G + V+++ GK++ F FV+ E+AQ AV++ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
++++G+ + +VE + K+ Q R LYV NL + LR+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+
Sbjct: 313 EFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 254 NDD 256
++
Sbjct: 371 KEE 373
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANF 199
++ R + F +FK R +R A AR + +Y+ N + L+E F +
Sbjct: 160 GMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GKY 214
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVS 258
P S V + G+S G+GFVSF E+A+ A+ ++GK++ G+ + + QK + +
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
Query: 259 ESNKEEEDVSEDQ 271
E ++ E + +D+
Sbjct: 275 ELKRKFEQMKQDR 287
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + A + F+P G ++ + + + ++ +A+V P +A+ A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + GR +R+ +++ + P ++S +++ NL + + L + FSA
Sbjct: 73 NFDVIKGRPVRIMWSQ--RDPSLRKSGVG-------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
N +S KVV + N S GYGFV F T+E AE AI ++G L R
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V L E FS +S +V + RS GY +V+F +AE A+ ++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 237 DGKELMGRPLRLKFGQKNDDVSESN 261
+ + GRP+R+ + Q++ + +S
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSG 97
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NLP E++ F G + +++ + G +R F FV E A +AV + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 141 TQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
+ ++ V E +KF++ R R + LY+ NL V
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFE----KSQGANLYLKNLDDSVDDE 346
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E FS N SSKV+ +G S G+GFV+++ EEA A+S ++GK + +PL +
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 250 FGQKNDD 256
Q+ +D
Sbjct: 406 LAQRKED 412
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 48 PTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107
PT +QV ++ + +QT + LY +L + A + +LF VV
Sbjct: 21 PTAQTSVQVPVSIPLPSPVVVADQTHPNS---SLYAGDLDPKVTEAHLFDLFKHVANVVS 77
Query: 108 VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167
V + + + ++ +A++ ++P +A A+ + + R IR+ + + P + S
Sbjct: 78 VRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR--DPSTRLSGK 135
Query: 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227
+++ NL + + L E FS+ +S KV + GRS GYGFV F +E
Sbjct: 136 G-------NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEKEE 187
Query: 228 EAEAAISSLDG 238
A+AAI L+G
Sbjct: 188 SAQAAIDKLNG 198
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF- 139
+++ NL S + F+ GT++ ++ G+++ + FV E AQAA+++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 140 -----DTQEVSGRIIR-VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
D Q G IR E A+ P P+ + +YV NL ++ LR+
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFT----------NVYVKNLPKEIGEDELRK 247
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F +SS VV G S +GFV+F E A +A+ ++G L L + QK
Sbjct: 248 TF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 254 NDDVSESNKEEE 265
+S +EEE
Sbjct: 307 -----KSEREEE 313
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LY +L KV HL + F N VS +V + N RS GY +++F+ +A A+ +L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 237 DGKELMGRPLRLKFGQKNDDVSESNK 262
+ L RP+R+ ++ S K
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGK 135
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
E++Q N LY+ NL S ++K +F+ G V +++ + G +R F FV ++P
Sbjct: 327 EKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNP 382
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKK 156
EEA A+++ + + + + + + A++
Sbjct: 383 EEALRALSEMNGKMIGRKPLYIALAQR 409
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N+ + AE ++L P G + V + + + G ++ F FV + E A+ AV++ +
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELN 288
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV+G+ + + E + KK ++ A+ LYV NL + LR
Sbjct: 289 EKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRA 348
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V + G S G+GFV +++ +EA A+S ++GK + +PL + Q+
Sbjct: 349 EFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 254 ND 255
D
Sbjct: 408 KD 409
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + FA G ++ ++ + GK+R FAFV ++ E A AA+ +
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + V KK R + A+ T +Y+ N+ +V + F
Sbjct: 196 GMLLNDKKVYVGH-HVGKKERLSKVEELRAQFT--NVYIKNVDLEVTDAEFEDLVKP-FG 251
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
P S + +G S G+GFV++ E A A+ L+ KE+ G+ L
Sbjct: 252 PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKL 297
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + ++ F GT+ ++++ G +R F FV +SP+EA AV++ +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMN 391
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+ + + + V A++ K R Q S A+ Q ++
Sbjct: 392 GKMIGTKPLYVALAQR-KDVRRQALESQIAQRAQQRM 427
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L V L E F+ PV+S +V ++ RS GY +V++ + E A+
Sbjct: 48 LYVGELDPSVTEAMLFEIFNM-IGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 236 LDGKELMGRPLRLKFGQKN 254
L+ + G+ R+ + Q++
Sbjct: 107 LNYSLIKGQSCRIMWSQRD 125
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N+ + AE ++L P G + V + + + G ++ F FV + E A+ AV++ +
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELN 288
Query: 141 TQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+EV+G+ + + E + KK ++ A+ LYV NL + LR
Sbjct: 289 EKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRA 348
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A F ++S V + G S G+GFV +++ +EA A+S ++GK + +PL + Q+
Sbjct: 349 EFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 254 ND 255
D
Sbjct: 408 KD 409
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + + FA G ++ ++ + GK+R FAFV ++ E A AA+ +
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++ + + V KK R + A+ T +Y+ N+ +V + F
Sbjct: 196 GMLLNDKKVYVGH-HVGKKERLSKVEELRAQFT--NVYIKNVDLEVTDAEFEDLVKP-FG 251
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246
P S + +G S G+GFV++ E A A+ L+ KE+ G+ L
Sbjct: 252 PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKL 297
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV NL + ++ F GT+ ++++ G +R F FV +SP+EA AV++ +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMN 391
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKL 177
+ + + + V A++ K R Q S A+ Q ++
Sbjct: 392 GKMIGTKPLYVALAQR-KDVRRQALESQIAQRAQQRM 427
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235
LYV L V L E F+ PV+S +V ++ RS GY +V++ + E A+
Sbjct: 48 LYVGELDPSVTEAMLFEIFNM-IGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 236 LDGKELMGRPLRLKFGQKN 254
L+ + G+ R+ + Q++
Sbjct: 107 LNYSLIKGQSCRIMWSQRD 125
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+YV NL A+ + +F P G V V + + GK+R F FV + E A AV + +
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
+E+ G+ + V A+K K+ ++ L+V NL + S L E
Sbjct: 301 DKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEE 360
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F ++S V + G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+
Sbjct: 361 EFKP-FGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 254 ND 255
D
Sbjct: 420 KD 421
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQ 133
++N +++ NL + + + F+ G ++ ++ + G+++ F FV + E A+
Sbjct: 141 RRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAE 200
Query: 134 AAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
AA+ + ++ R + F K R + S + +YV NL+ +V + E
Sbjct: 201 AAIENVNGMLLNDREV---FVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEE 257
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F F PV+S + EG+S G+GFV+F E A A+ ++ KE+ G+ L + QK
Sbjct: 258 IFKP-FGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S +++ F P GT+ ++ GK++ F FV +SPEEA A+ + +
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMN 403
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
+ + G+ + V A++ R Q AR
Sbjct: 404 QRMIQGKPLYVALAQRKDVRRSQLEQQIQAR 434
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV L S + A + +F+P G V + + + K+ +A+V + A+ +
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ V GR R+ ++ QR S R +++ NL + + L + FSA F
Sbjct: 120 NYSLVDGRPCRIMWS--------QRDPSL-RRNGDGNIFIKNLHPAIDNKALHDTFSA-F 169
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244
+ S V G+S +GFV + T E AEAAI +++G L R
Sbjct: 170 GRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 214
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV L+ V L E FS S +V ++ +S GY +V+F + AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + GRP R+ + Q++
Sbjct: 120 NYSLVDGRPCRIMWSQRD 137
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+Y+ N +K++F+ G + V+++ GK++ F FV+ S E A+ AV + +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 141 TQEVSGRIIRVEFAKK-----------FKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
++++G++I V A+K F++ + +R KLY+ NL +
Sbjct: 252 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG----VKLYIKNLDDTIDDE 307
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
LR FS+ F + S+V EG+S G+G + F++ E+A A++ ++G+ L +PL +
Sbjct: 308 KLRNEFSS-FGSI-SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Query: 250 FGQKN 254
Q++
Sbjct: 366 LAQRH 370
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL S + F+ G ++ +++ G ++ +AFV + A A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAI---- 154
Query: 141 TQEVSGRIIRV--EFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSA 197
+E++G++++ F +FK R R A ++ ++ +Y+ N + L++ FS
Sbjct: 155 -EEMNGKLLKGCKVFVGRFK-NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSK 212
Query: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
+S KV+ +S+ G+S G+GFVSF + E A+ A+ ++G+++ G+ + + QK
Sbjct: 213 YGKTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF 139
LYV +L + + F+ G V+ + I + + ++ +A+V +AQ A++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 140 DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199
+ + G+ IR+ ++ QR A R +++ NL + + L E FSA
Sbjct: 72 NFDIIKGKSIRLMWS--------QRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243
+SSKV+ S++ S GY FV F + A+ AI ++GK L G
Sbjct: 123 KILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 164
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
+ A+ LYV +L V L FS +S ++ + RS GY +V+F
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQKN 254
+A+ A+ +++ + G+ +RL + Q++
Sbjct: 62 ADAQKALDTMNFDIIKGKSIRLMWSQRD 89
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 100/181 (55%), Gaps = 10/181 (5%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP 129
++ +K+ R L+V NLP+ + E+KN+F ++V ++ +K G ++ A++ +
Sbjct: 362 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTE 418
Query: 130 EEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRST 189
EA+ A+ + EV GR + +++ + + Q+ RE++ L V+NLS+
Sbjct: 419 AEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE--RESKT-LIVNNLSYAASEE 475
Query: 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249
L+E F +S + ++N+GR GY FV F T E+A+ A++S + E+ GR +RL+
Sbjct: 476 TLQELFKK----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLE 531
Query: 250 F 250
F
Sbjct: 532 F 532
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 33/271 (12%)
Query: 5 EAAATSIFLTNHPF-----SFSCLFPKLPHCIKLLHSSNSTPSLSY-NFPTRNLCLQVCS 58
E A ++F+ N P+ +F +L+ S+ ++Y F T +
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 59 TLQDTTVETKP-----------EQTQKQNIRRK---LYVFNLPWSFSVAEIKNLFAPCGT 104
Q T V+ + +++QK R+ L V NL ++ S ++ LF
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA-- 484
Query: 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQR 164
+++ ++ G+ + +AFV + E+A+ A+N + E+ GR IR+EF+ P Q+
Sbjct: 485 -TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSS----PSWQK 539
Query: 165 S---ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
A + L+V LS LRE F + +S+++V + + G S G+GFV
Sbjct: 540 GNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFV 596
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252
F++ E+A+AA +++ E+ G + L F +
Sbjct: 597 DFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 177 LYVSNLS----WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232
L+V NL+ ++ T ++EFF VS E G S +G+V F + E+ + A
Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVS-----EVRIGSSKRFGYVDFLSAEDMDKA 337
Query: 233 ISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE 265
+ L+GK+LMG ++L+ + + + E+ KE +
Sbjct: 338 LQ-LNGKKLMGLEIKLEKAKSKESLKENKKERD 369
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS 128
E + ++ + L V LP + + E+K+LF G + ++++ K G++ + FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 129 PEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRS 188
P++A+ A+N + + + I+V +A R +SA R+ LYVS L +
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQ 166
Query: 189 THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPL 246
L + FS ++S+++ + G S G GF+ F + EAE AI L+G++ G P+
Sbjct: 167 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 226
Query: 247 RLKF 250
+KF
Sbjct: 227 TVKF 230
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 44/235 (18%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I + G
Sbjct: 133 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 192
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFAKKFKKP-----------RPQR 164
+R F+ EA+ A+ + Q+ G I V+FA + P R
Sbjct: 193 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPNR 252
Query: 165 SASAPARETQHK-----------------------------LYVSNLSWKVRSTHLREFF 195
P + + ++V NL+ + L + F
Sbjct: 253 RYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMF 312
Query: 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250
+ KV+ + N + G+GFV+ +EA AI+SL+G L R L++ F
Sbjct: 313 GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 367
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S+ +++ L V+ L + L+ F + S K+V + G+S GYGFV++
Sbjct: 59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 118
Query: 227 EEAEAAISSLDGKELMGRPLRLKFGQ 252
++AE AI++L+G L + +++ + +
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYAR 144
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + LF P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSY 114
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
++V NLS + + L + F + KV+ + + G+GFV+ +EA AI+SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 237 DGKELMGRPLRLKF 250
+G L R L++ F
Sbjct: 346 NGYRLGERVLQVSF 359
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E+K+LF G + ++++ K G++ + FV P++A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A R +SA R+ LYVS L + L + FS
Sbjct: 98 NTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 58/248 (23%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I + G
Sbjct: 105 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGI 164
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFA--------------------K 155
+R F+ EA+ A+ + Q+ G I V+FA +
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224
Query: 156 KFKKPRPQRS-------------------------------ASAPAR-ETQHKLYVSNLS 183
++ P Q++ + P T ++V NL+
Sbjct: 225 RYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLA 284
Query: 184 WKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ L + F F V++ KV+ + N + G+GFV+ +EA AI+SL+G L
Sbjct: 285 PDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 343
Query: 243 GRPLRLKF 250
R L++ F
Sbjct: 344 DRVLQVSF 351
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S +++ L V+ L + L+ F + S K+V + G+S GYGFV++
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 227 EEAEAAISSLDGKELMGRPLRLKF 250
++AE AI++L+G L + +++ +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSY 114
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E+K+LF G + ++++ K G++ + FV P++A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A R +SA R+ LYVS L + L + FS
Sbjct: 98 NTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 58/248 (23%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I + G
Sbjct: 105 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGI 164
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFA--------------------K 155
+R F+ EA+ A+ + Q+ G I V+FA +
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224
Query: 156 KFKKPRPQRS-------------------------------ASAPAR-ETQHKLYVSNLS 183
++ P Q++ + P T ++V NL+
Sbjct: 225 RYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLA 284
Query: 184 WKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
+ L + F F V++ KV+ + N + G+GFV+ +EA AI+SL+G L
Sbjct: 285 PDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 343
Query: 243 GRPLRLKF 250
R L++ F
Sbjct: 344 DRVLQVSF 351
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S +++ L V+ L + L+ F + S K+V + G+S GYGFV++
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 227 EEAEAAISSLDGKELMGRPLRLKF 250
++AE AI++L+G L + +++ +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSY 114
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV P +A A+
Sbjct: 33 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 92
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS+L + + + FS
Sbjct: 93 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSSLPKTMNQKEMEQLFS 141
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 142 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKF 197
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 52/242 (21%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV +LP + + E++ LF+ G ++ I + G
Sbjct: 100 LQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGV 159
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKFKKPRPQ-----------R 164
+R F+ EA+ A+ + Q+ G I V+FA + Q R
Sbjct: 160 SRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTAR 219
Query: 165 SASAPARETQHK-----------------------------------LYVSNLSWKVRST 189
+ P + ++V NLS + +
Sbjct: 220 RYTGPLHHQTQRFSPLSILPRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADES 279
Query: 190 HLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248
L + F F V++ KV+ + + G+GFV+ +EA AI+SL+G L R L++
Sbjct: 280 VLWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 338
Query: 249 KF 250
F
Sbjct: 339 SF 340
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229
A +++ L V+ L + + F + S K+V + G+S GYGFV++ +A
Sbjct: 29 ADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDA 88
Query: 230 EAAISSLDGKELMGRPLRLKF 250
+ AI++L+G +L + +++ +
Sbjct: 89 DKAINTLNGLKLQTKTIKVSY 109
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E+K+LF G + ++++ K G++ + FV P++A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + + + I+V +A R +SA R+ LYVS L + L + FS
Sbjct: 98 NTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 57/248 (22%)
Query: 60 LQDTTVETKPEQTQKQNIRR-KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGK 117
LQ T++ + +IR LYV LP + + E++ LF+ G ++ I + G
Sbjct: 105 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGI 164
Query: 118 NRNFAFVTMASPEEAQAAVNQFDTQEVSGRI--IRVEFAKKFKKP-----------RPQR 164
+R F+ EA+ A+ + Q+ G I V+FA + P R
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224
Query: 165 SASAPARETQHKLYVSNL---SWKVRS----------THLREF------------FSANF 199
P + + + NL ++ V+S T L F N
Sbjct: 225 RYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNL 284
Query: 200 NP-----------------VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242
P + KV+ + N + G+GFV+ +EA AI+SL+G L
Sbjct: 285 APDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 344
Query: 243 GRPLRLKF 250
R L++ F
Sbjct: 345 DRVLQVSF 352
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226
S +++ L V+ L + L+ F + S K+V + G+S GYGFV++
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 227 EEAEAAISSLDGKELMGRPLRLKF 250
++AE AI++L+G L + +++ +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSY 114
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
LYV N+ + + + LFA G +V + K GK + F FV E+A AV +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 141 TQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLRE 193
E++G + V A+K KK A+ L+V NL V L E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253
F A + ++S V + G+S G+GFV F+T EEA AI+ + + + G+PL + Q+
Sbjct: 341 EF-APYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 254 ND 255
D
Sbjct: 400 KD 401
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 67 TKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVT 125
T E +N LYV +L S S A + ++F+P G+V + + + K +A+V
Sbjct: 26 TGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 126 MASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK 185
E + A+ Q + + GR+ R+ ++++ R + S + +++ NL
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHPD 136
Query: 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245
+ + L + FS + +SSK+ + N G+S G+GFV F + A+ AI +L+G L G+
Sbjct: 137 IDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 195
Query: 246 L 246
+
Sbjct: 196 I 196
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
+++ NL + + F+ G ++ +I + GK++ F FV A+ A++ +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200
++G+ I V +K R + A T LYV N++ + +E F A F
Sbjct: 188 GMLLNGQEIYVA-PHLSRKERDSQLEETKAHYT--NLYVKNINSETTDEQFQELF-AKFG 243
Query: 201 PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256
P+ S + + +G+ G+GFV++ E+A A+ +L+ EL G L + QK ++
Sbjct: 244 PIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140
L+V NL S +++ FAP GT+ ++++ + GK++ F FV ++PEEA A+ + +
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 141 TQEVSGRIIRVEFAKKFKKPRPQRSASAPAR 171
Q V+G+ + V A++ R Q + AR
Sbjct: 384 QQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 414
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
LYV +L V HL + FS + S +V ++ S GY +V+F E AI L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 237 DGKELMGRPLRLKFGQKN 254
+ + GR R+ + Q++
Sbjct: 100 NYTPIKGRLCRIMWSQRD 117
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAV 136
+ L V LP + + E K+LF G + ++++ K G++ + FV + P +A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 137 NQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196
N + ++ + I+V +A R +SA R+ LYVS L + + + FS
Sbjct: 98 NTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFS 146
Query: 197 ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250
++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQF 139
++V+NL + + LF P G V +V++I+ K + F FVTM + +EA A+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 140 DTQEVSGRIIRVEF 153
+ + R+++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 162 PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFV 221
P + +++ L V+ L + + F + + S K+V + G+S GYGFV
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
Query: 222 SFATKEEAEAAISSLDGKELMGRPLRLKF 250
+++ +A+ AI++L+G +L + +++ +
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSY 114
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236
++V NLS + + L + F + KV+ + + G+GFV+ +EA AI+SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 237 DGKELMGRPLRLKF 250
+G L R L++ F
Sbjct: 346 NGYRLGERVLQVSF 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,300,451
Number of Sequences: 539616
Number of extensions: 3881867
Number of successful extensions: 14895
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 350
Number of HSP's that attempted gapping in prelim test: 12117
Number of HSP's gapped (non-prelim): 2230
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)