Query 044184
Match_columns 275
No_of_seqs 193 out of 1856
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8.9E-35 1.9E-39 252.5 21.5 173 74-257 103-278 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-34 5.6E-39 253.7 22.7 180 77-256 2-351 (352)
3 TIGR01645 half-pint poly-U bin 100.0 2.2E-34 4.9E-39 262.4 21.6 180 76-255 105-285 (612)
4 KOG0148 Apoptosis-promoting RN 100.0 6.9E-33 1.5E-37 222.1 17.1 176 78-259 62-243 (321)
5 TIGR01622 SF-CC1 splicing fact 100.0 2.1E-31 4.5E-36 242.9 22.1 180 74-254 85-266 (457)
6 KOG0144 RNA-binding protein CU 100.0 4.9E-32 1.1E-36 229.7 13.4 174 75-259 31-211 (510)
7 TIGR01628 PABP-1234 polyadenyl 100.0 9.5E-30 2.1E-34 237.4 19.6 168 80-257 2-170 (562)
8 KOG0117 Heterogeneous nuclear 100.0 5.4E-30 1.2E-34 218.2 15.3 206 42-261 127-338 (506)
9 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-29 3.2E-34 236.0 19.0 181 76-257 176-367 (562)
10 KOG0145 RNA-binding protein EL 100.0 1.3E-29 2.8E-34 202.3 14.1 170 76-256 39-211 (360)
11 KOG0131 Splicing factor 3b, su 100.0 1.5E-29 3.2E-34 192.0 12.2 173 76-258 7-181 (203)
12 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-28 2.6E-33 224.7 20.3 173 77-257 57-310 (578)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.3E-28 9.3E-33 224.0 21.8 177 73-255 170-376 (509)
14 KOG0145 RNA-binding protein EL 100.0 2.5E-28 5.5E-33 194.9 16.2 212 44-255 87-359 (360)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-27 2.5E-32 218.6 21.6 173 76-254 273-480 (481)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-27 2.5E-32 218.6 21.1 170 77-255 1-175 (481)
17 KOG0127 Nucleolar protein fibr 100.0 3.6E-28 7.9E-33 211.6 16.0 178 79-257 6-199 (678)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.5E-27 7.5E-32 218.0 21.0 177 77-253 294-501 (509)
19 KOG0144 RNA-binding protein CU 99.9 6E-28 1.3E-32 204.9 10.8 215 44-258 80-508 (510)
20 KOG0127 Nucleolar protein fibr 99.9 6.9E-27 1.5E-31 203.6 17.3 180 78-257 117-381 (678)
21 KOG0146 RNA-binding protein ET 99.9 6.1E-28 1.3E-32 193.5 9.6 181 77-257 18-368 (371)
22 KOG0117 Heterogeneous nuclear 99.9 3.4E-26 7.3E-31 195.2 16.7 166 76-258 81-252 (506)
23 KOG0109 RNA-binding protein LA 99.9 4.5E-26 9.8E-31 184.8 10.2 149 79-255 3-151 (346)
24 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-24 4.5E-29 197.0 21.5 172 78-253 186-447 (457)
25 KOG0124 Polypyrimidine tract-b 99.9 3.5E-26 7.7E-31 190.6 8.6 179 78-256 113-292 (544)
26 KOG0123 Polyadenylate-binding 99.9 4.3E-24 9.3E-29 186.7 16.7 161 79-263 2-162 (369)
27 KOG0110 RNA-binding protein (R 99.9 2E-24 4.3E-29 193.8 12.5 176 79-256 516-695 (725)
28 KOG0147 Transcriptional coacti 99.9 1.1E-24 2.3E-29 190.7 8.8 187 73-260 174-364 (549)
29 KOG0123 Polyadenylate-binding 99.9 3.7E-23 7.9E-28 180.9 15.3 221 28-256 27-248 (369)
30 KOG4205 RNA-binding protein mu 99.9 8.3E-23 1.8E-27 172.9 10.8 177 77-260 5-182 (311)
31 KOG0148 Apoptosis-promoting RN 99.9 1.5E-22 3.2E-27 162.9 11.1 143 76-258 4-146 (321)
32 TIGR01645 half-pint poly-U bin 99.9 1.9E-20 4.2E-25 171.4 19.8 79 77-155 203-282 (612)
33 KOG4206 Spliceosomal protein s 99.8 3.2E-19 6.9E-24 141.0 15.6 169 77-252 8-220 (221)
34 KOG0105 Alternative splicing f 99.8 1.6E-18 3.5E-23 132.3 16.7 169 76-253 4-189 (241)
35 KOG0147 Transcriptional coacti 99.8 2.2E-19 4.8E-24 157.5 12.4 170 79-253 279-527 (549)
36 KOG4211 Splicing factor hnRNP- 99.8 8.9E-18 1.9E-22 145.8 16.5 173 77-254 9-182 (510)
37 KOG1548 Transcription elongati 99.8 1.9E-17 4.1E-22 137.8 17.2 186 77-266 133-364 (382)
38 PLN03134 glycine-rich RNA-bind 99.8 3.2E-18 7E-23 131.1 11.1 83 76-158 32-115 (144)
39 PLN03134 glycine-rich RNA-bind 99.8 9.9E-18 2.1E-22 128.4 12.7 88 170-257 30-117 (144)
40 KOG4212 RNA-binding protein hn 99.7 8.1E-17 1.8E-21 137.7 15.7 175 78-253 44-293 (608)
41 KOG0106 Alternative splicing f 99.7 1.2E-17 2.6E-22 133.4 7.6 157 79-250 2-167 (216)
42 KOG1457 RNA binding protein (c 99.7 3E-16 6.6E-21 123.4 14.3 164 75-242 31-274 (284)
43 KOG0110 RNA-binding protein (R 99.7 1.4E-16 2.9E-21 143.8 13.8 174 74-252 381-596 (725)
44 KOG1190 Polypyrimidine tract-b 99.7 7.1E-16 1.5E-20 131.0 16.7 251 1-266 71-385 (492)
45 PF00076 RRM_1: RNA recognitio 99.7 1.2E-16 2.5E-21 107.4 8.1 70 81-150 1-70 (70)
46 KOG1190 Polypyrimidine tract-b 99.7 1.2E-15 2.6E-20 129.6 15.3 169 78-254 297-491 (492)
47 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.8E-16 3.9E-21 140.0 10.3 80 78-157 269-349 (352)
48 COG0724 RNA-binding proteins ( 99.7 1.6E-15 3.5E-20 128.6 13.2 158 78-235 115-286 (306)
49 KOG0113 U1 small nuclear ribon 99.7 1.1E-15 2.5E-20 125.0 11.2 82 75-156 98-180 (335)
50 TIGR01659 sex-lethal sex-letha 99.6 1.3E-15 2.9E-20 132.8 11.3 86 170-255 103-188 (346)
51 KOG0122 Translation initiation 99.6 7.9E-16 1.7E-20 122.7 8.7 82 76-157 187-269 (270)
52 PF00076 RRM_1: RNA recognitio 99.6 2E-15 4.4E-20 101.3 9.2 70 177-247 1-70 (70)
53 PF14259 RRM_6: RNA recognitio 99.6 2.1E-15 4.6E-20 101.4 8.8 70 81-150 1-70 (70)
54 KOG0124 Polypyrimidine tract-b 99.6 1.4E-14 3.1E-19 121.6 13.6 174 77-250 209-531 (544)
55 KOG0121 Nuclear cap-binding pr 99.6 1.4E-15 3E-20 109.5 6.4 86 73-158 31-117 (153)
56 KOG0120 Splicing factor U2AF, 99.6 1.4E-14 3E-19 129.0 14.0 180 73-252 284-490 (500)
57 KOG0122 Translation initiation 99.6 8E-15 1.7E-19 117.0 10.7 85 170-254 185-269 (270)
58 TIGR01648 hnRNP-R-Q heterogene 99.6 4.8E-15 1E-19 136.0 10.6 118 77-201 232-368 (578)
59 KOG0149 Predicted RNA-binding 99.6 4.6E-15 1E-19 117.9 8.4 82 77-159 11-93 (247)
60 PLN03120 nucleic acid binding 99.6 9E-15 1.9E-19 120.0 9.7 79 78-159 4-82 (260)
61 KOG0107 Alternative splicing f 99.6 4.4E-15 9.5E-20 112.8 7.3 79 77-159 9-87 (195)
62 KOG0149 Predicted RNA-binding 99.6 4.4E-15 9.6E-20 118.0 7.2 85 171-256 9-93 (247)
63 KOG0125 Ataxin 2-binding prote 99.6 6.2E-15 1.3E-19 122.2 7.6 81 76-157 94-174 (376)
64 KOG0126 Predicted RNA-binding 99.6 5.8E-16 1.2E-20 118.1 1.1 88 73-160 30-118 (219)
65 PF14259 RRM_6: RNA recognitio 99.6 2.3E-14 5.1E-19 96.3 8.5 70 177-247 1-70 (70)
66 KOG0125 Ataxin 2-binding prote 99.5 3.6E-14 7.8E-19 117.7 9.5 86 170-257 92-177 (376)
67 KOG1365 RNA-binding protein Fu 99.5 6.2E-14 1.3E-18 118.4 11.0 174 78-253 161-361 (508)
68 PLN03120 nucleic acid binding 99.5 8.7E-14 1.9E-18 114.2 11.4 79 174-256 4-82 (260)
69 KOG0126 Predicted RNA-binding 99.5 1.2E-15 2.7E-20 116.3 0.2 86 172-257 33-118 (219)
70 smart00362 RRM_2 RNA recogniti 99.5 9.8E-14 2.1E-18 92.9 8.8 72 80-152 1-72 (72)
71 KOG4207 Predicted splicing fac 99.5 3.6E-14 7.9E-19 110.5 7.2 87 169-255 8-94 (256)
72 KOG0111 Cyclophilin-type pepti 99.5 1.7E-14 3.7E-19 113.3 5.1 85 76-160 8-93 (298)
73 KOG0129 Predicted RNA-binding 99.5 1.1E-12 2.5E-17 115.1 16.5 159 73-235 254-432 (520)
74 KOG4207 Predicted splicing fac 99.5 3.8E-14 8.3E-19 110.4 6.6 85 74-158 9-94 (256)
75 KOG0114 Predicted RNA-binding 99.5 9.9E-14 2.1E-18 96.3 7.9 81 75-157 15-95 (124)
76 KOG0121 Nuclear cap-binding pr 99.5 1E-13 2.2E-18 100.0 7.5 81 173-253 35-115 (153)
77 PLN03121 nucleic acid binding 99.5 2.2E-13 4.8E-18 110.1 9.8 77 78-157 5-81 (243)
78 KOG0130 RNA-binding protein RB 99.5 7.8E-14 1.7E-18 101.4 5.9 81 76-156 70-151 (170)
79 KOG4212 RNA-binding protein hn 99.5 2.9E-12 6.2E-17 110.2 16.2 74 173-251 535-608 (608)
80 KOG0114 Predicted RNA-binding 99.5 4.9E-13 1.1E-17 92.9 9.3 84 170-256 14-97 (124)
81 PLN03213 repressor of silencin 99.5 1.8E-13 3.9E-18 119.2 8.7 78 76-156 8-87 (759)
82 smart00360 RRM RNA recognition 99.5 3.7E-13 8.1E-18 89.7 8.0 70 83-152 1-71 (71)
83 smart00362 RRM_2 RNA recogniti 99.5 5.3E-13 1.2E-17 89.2 8.7 72 176-249 1-72 (72)
84 cd00590 RRM RRM (RNA recogniti 99.5 7E-13 1.5E-17 89.1 9.2 74 80-153 1-74 (74)
85 KOG0113 U1 small nuclear ribon 99.4 7.2E-13 1.6E-17 108.7 10.5 85 170-254 97-181 (335)
86 smart00360 RRM RNA recognition 99.4 6.8E-13 1.5E-17 88.4 8.1 71 179-249 1-71 (71)
87 PLN03213 repressor of silencin 99.4 5.8E-13 1.3E-17 116.0 9.3 79 172-254 8-88 (759)
88 KOG0108 mRNA cleavage and poly 99.4 3.8E-13 8.1E-18 119.2 7.9 80 79-158 19-99 (435)
89 KOG0120 Splicing factor U2AF, 99.4 7E-13 1.5E-17 118.2 9.5 182 74-261 171-376 (500)
90 KOG0111 Cyclophilin-type pepti 99.4 1.7E-13 3.8E-18 107.7 5.0 85 171-255 7-91 (298)
91 KOG1456 Heterogeneous nuclear 99.4 1.7E-11 3.7E-16 103.5 17.0 175 73-254 282-491 (494)
92 KOG0130 RNA-binding protein RB 99.4 8.6E-13 1.9E-17 96.0 7.8 89 168-256 66-154 (170)
93 KOG0108 mRNA cleavage and poly 99.4 7.4E-13 1.6E-17 117.3 8.2 82 175-256 19-100 (435)
94 COG0724 RNA-binding proteins ( 99.4 2.7E-12 5.8E-17 108.7 11.4 80 174-253 115-194 (306)
95 KOG0131 Splicing factor 3b, su 99.4 7E-13 1.5E-17 101.5 6.4 82 171-252 6-87 (203)
96 PLN03121 nucleic acid binding 99.4 3.6E-12 7.8E-17 103.1 10.7 80 173-256 4-83 (243)
97 KOG0107 Alternative splicing f 99.4 1.5E-12 3.2E-17 99.1 8.0 80 172-256 8-87 (195)
98 cd00590 RRM RRM (RNA recogniti 99.4 5.6E-12 1.2E-16 84.7 9.5 74 176-250 1-74 (74)
99 smart00361 RRM_1 RNA recogniti 99.4 4.1E-12 8.9E-17 85.2 7.9 62 188-249 2-70 (70)
100 PF13893 RRM_5: RNA recognitio 99.3 5.6E-12 1.2E-16 80.7 6.9 56 95-154 1-56 (56)
101 KOG4206 Spliceosomal protein s 99.3 7E-12 1.5E-16 99.6 8.7 86 172-260 7-96 (221)
102 PF13893 RRM_5: RNA recognitio 99.3 8.6E-12 1.9E-16 79.9 7.6 56 191-251 1-56 (56)
103 KOG1456 Heterogeneous nuclear 99.3 4.9E-11 1.1E-15 100.8 12.9 167 75-255 28-200 (494)
104 KOG4211 Splicing factor hnRNP- 99.3 1E-10 2.2E-15 102.4 15.3 171 76-250 101-354 (510)
105 smart00361 RRM_1 RNA recogniti 99.3 1.2E-11 2.6E-16 83.0 7.2 60 92-151 2-69 (70)
106 KOG4208 Nucleolar RNA-binding 99.2 3.1E-11 6.7E-16 94.5 8.1 85 170-254 45-130 (214)
107 KOG0226 RNA-binding proteins [ 99.2 3.4E-11 7.3E-16 96.9 7.5 172 79-255 97-271 (290)
108 KOG0109 RNA-binding protein LA 99.2 1.7E-11 3.8E-16 100.4 5.9 74 175-256 3-76 (346)
109 KOG0128 RNA-binding protein SA 99.2 1.9E-12 4E-17 119.5 -1.7 151 76-255 665-816 (881)
110 KOG4454 RNA binding protein (R 99.2 5.4E-12 1.2E-16 99.3 1.1 144 77-242 8-151 (267)
111 KOG4208 Nucleolar RNA-binding 99.2 9.8E-11 2.1E-15 91.7 7.7 84 74-157 45-130 (214)
112 KOG0105 Alternative splicing f 99.1 9.8E-11 2.1E-15 90.0 6.6 80 172-254 4-83 (241)
113 KOG4210 Nuclear localization s 99.1 5.9E-11 1.3E-15 100.7 5.8 178 76-256 86-266 (285)
114 KOG0146 RNA-binding protein ET 99.1 1.1E-10 2.3E-15 94.7 6.3 86 73-158 280-366 (371)
115 KOG0132 RNA polymerase II C-te 99.1 1.6E-10 3.5E-15 105.8 7.8 108 78-196 421-528 (894)
116 KOG0415 Predicted peptidyl pro 99.1 1.7E-10 3.7E-15 96.9 6.1 83 76-158 237-320 (479)
117 KOG0415 Predicted peptidyl pro 99.1 3.7E-10 8E-15 95.0 7.3 88 169-256 234-321 (479)
118 KOG0112 Large RNA-binding prot 99.1 1.1E-10 2.3E-15 108.6 4.0 166 74-258 368-535 (975)
119 KOG0153 Predicted RNA-binding 99.0 1.9E-09 4.1E-14 90.6 8.4 80 169-254 223-303 (377)
120 KOG1457 RNA binding protein (c 99.0 4.1E-09 8.8E-14 83.6 9.1 94 171-264 31-128 (284)
121 KOG0153 Predicted RNA-binding 98.9 2.8E-09 6.1E-14 89.6 8.1 82 70-156 220-302 (377)
122 KOG1365 RNA-binding protein Fu 98.9 4.6E-09 9.9E-14 89.4 8.8 173 76-251 58-240 (508)
123 KOG0132 RNA polymerase II C-te 98.9 3.2E-09 7E-14 97.5 7.7 82 171-258 418-499 (894)
124 KOG4660 Protein Mei2, essentia 98.9 2E-09 4.4E-14 95.7 5.9 168 74-253 71-249 (549)
125 PF04059 RRM_2: RNA recognitio 98.9 1.8E-08 3.9E-13 71.0 9.5 83 174-256 1-89 (97)
126 KOG4205 RNA-binding protein mu 98.9 2.2E-09 4.7E-14 91.5 4.7 88 173-261 5-92 (311)
127 KOG0533 RRM motif-containing p 98.8 1.8E-08 3.8E-13 82.8 7.7 81 76-156 81-161 (243)
128 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.7E-13 90.9 6.8 83 75-157 402-485 (940)
129 PF04059 RRM_2: RNA recognitio 98.8 7.5E-08 1.6E-12 67.9 8.6 79 79-157 2-87 (97)
130 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.5E-08 7.5E-13 88.0 8.4 83 172-254 403-485 (940)
131 KOG0533 RRM motif-containing p 98.7 9.8E-08 2.1E-12 78.4 9.0 86 171-257 80-165 (243)
132 KOG4307 RNA binding protein RB 98.7 8.4E-08 1.8E-12 87.4 8.4 76 175-250 868-943 (944)
133 KOG4209 Splicing factor RNPS1, 98.7 4.8E-08 1E-12 80.4 6.2 84 170-254 97-180 (231)
134 KOG0116 RasGAP SH3 binding pro 98.7 5.1E-08 1.1E-12 86.4 6.6 78 78-156 288-366 (419)
135 KOG4209 Splicing factor RNPS1, 98.7 4.9E-08 1.1E-12 80.3 6.1 84 73-157 96-180 (231)
136 KOG0151 Predicted splicing reg 98.6 7.7E-08 1.7E-12 87.9 7.1 79 78-156 174-256 (877)
137 KOG0226 RNA-binding proteins [ 98.6 4.9E-08 1.1E-12 78.9 4.8 81 74-154 186-267 (290)
138 KOG4307 RNA binding protein RB 98.6 7.4E-08 1.6E-12 87.8 6.1 177 78-256 311-516 (944)
139 KOG1548 Transcription elongati 98.6 3E-07 6.6E-12 77.5 8.9 83 171-254 131-221 (382)
140 KOG0116 RasGAP SH3 binding pro 98.6 1.7E-07 3.6E-12 83.1 7.8 82 173-255 287-368 (419)
141 KOG4676 Splicing factor, argin 98.6 1.7E-08 3.8E-13 86.1 1.3 166 79-250 8-222 (479)
142 KOG2193 IGF-II mRNA-binding pr 98.5 1.2E-08 2.5E-13 88.0 -1.4 153 79-255 2-158 (584)
143 PF11608 Limkain-b1: Limkain b 98.5 1.1E-06 2.3E-11 59.3 7.7 75 175-258 3-81 (90)
144 KOG4660 Protein Mei2, essentia 98.4 2.8E-07 6.1E-12 82.3 5.6 74 169-247 70-143 (549)
145 KOG0151 Predicted splicing reg 98.4 6.8E-07 1.5E-11 81.9 7.8 86 170-255 170-258 (877)
146 KOG4454 RNA binding protein (R 98.4 1.6E-07 3.5E-12 74.4 3.0 83 170-254 5-87 (267)
147 KOG0106 Alternative splicing f 98.3 5.7E-07 1.2E-11 72.4 4.3 72 176-255 3-74 (216)
148 PF11608 Limkain-b1: Limkain b 98.1 8.8E-06 1.9E-10 54.9 6.1 70 79-157 3-77 (90)
149 KOG0128 RNA-binding protein SA 98.0 2E-07 4.4E-12 86.9 -4.3 162 78-241 571-734 (881)
150 KOG1995 Conserved Zn-finger pr 98.0 1.3E-05 2.9E-10 68.3 5.3 88 171-258 63-158 (351)
151 KOG2314 Translation initiation 97.9 1.3E-05 2.9E-10 71.8 4.8 81 76-156 56-143 (698)
152 KOG1995 Conserved Zn-finger pr 97.9 1.5E-05 3.2E-10 68.0 4.1 81 77-157 65-154 (351)
153 COG5175 MOT2 Transcriptional r 97.9 3.6E-05 7.9E-10 65.0 6.1 78 78-155 114-201 (480)
154 PF08777 RRM_3: RNA binding mo 97.8 5.5E-05 1.2E-09 54.6 5.8 73 175-253 2-79 (105)
155 KOG4210 Nuclear localization s 97.8 1.8E-05 3.8E-10 67.5 3.6 80 77-157 183-264 (285)
156 COG5175 MOT2 Transcriptional r 97.7 8.9E-05 1.9E-09 62.7 6.7 83 172-254 112-203 (480)
157 PF08777 RRM_3: RNA binding mo 97.7 0.00013 2.9E-09 52.6 6.0 59 79-142 2-60 (105)
158 KOG2314 Translation initiation 97.7 0.00011 2.4E-09 66.2 6.6 81 172-253 56-143 (698)
159 KOG0115 RNA-binding protein p5 97.6 0.00016 3.6E-09 59.0 6.8 88 131-237 6-93 (275)
160 KOG4849 mRNA cleavage factor I 97.5 6.7E-05 1.5E-09 63.7 3.1 75 78-152 80-157 (498)
161 KOG1855 Predicted RNA-binding 97.5 0.0001 2.2E-09 64.3 4.2 74 167-240 224-310 (484)
162 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00053 1.1E-08 48.8 6.8 78 77-156 5-91 (100)
163 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00033 7.2E-09 43.8 5.0 52 79-136 2-53 (53)
164 KOG3152 TBP-binding protein, a 97.4 7.5E-05 1.6E-09 60.9 2.3 72 77-148 73-157 (278)
165 PF08952 DUF1866: Domain of un 97.4 0.0013 2.9E-08 49.6 8.2 77 170-255 23-108 (146)
166 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00097 2.1E-08 47.5 7.0 79 173-253 5-91 (100)
167 KOG2416 Acinus (induces apopto 97.3 0.00034 7.4E-09 63.5 5.3 84 168-256 438-524 (718)
168 KOG1855 Predicted RNA-binding 97.3 0.00034 7.3E-09 61.1 4.3 70 73-142 226-309 (484)
169 KOG4849 mRNA cleavage factor I 97.2 0.00035 7.7E-09 59.4 4.1 77 171-248 77-156 (498)
170 KOG1996 mRNA splicing factor [ 97.2 0.0012 2.7E-08 54.9 6.6 66 188-253 300-366 (378)
171 KOG3152 TBP-binding protein, a 97.2 0.00029 6.4E-09 57.5 2.9 73 173-245 73-157 (278)
172 KOG0129 Predicted RNA-binding 97.1 0.0014 3.1E-08 58.7 6.7 65 73-137 365-431 (520)
173 PF08675 RNA_bind: RNA binding 97.1 0.0038 8.1E-08 42.3 7.0 55 78-140 9-63 (87)
174 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0022 4.7E-08 40.1 5.3 52 175-233 2-53 (53)
175 KOG2202 U2 snRNP splicing fact 96.9 0.00033 7.1E-09 57.3 1.1 64 93-156 83-147 (260)
176 KOG2416 Acinus (induces apopto 96.9 0.00071 1.5E-08 61.5 2.8 77 74-155 440-520 (718)
177 KOG2193 IGF-II mRNA-binding pr 96.8 0.0012 2.5E-08 57.8 3.6 79 175-259 2-81 (584)
178 KOG1996 mRNA splicing factor [ 96.8 0.0036 7.8E-08 52.3 6.1 64 92-155 300-365 (378)
179 KOG0112 Large RNA-binding prot 96.7 0.0043 9.4E-08 59.2 6.6 109 44-157 417-531 (975)
180 PF10309 DUF2414: Protein of u 96.6 0.013 2.8E-07 37.6 6.4 54 79-139 6-62 (62)
181 KOG2202 U2 snRNP splicing fact 96.6 0.0014 2.9E-08 53.8 2.3 63 189-252 83-146 (260)
182 KOG0115 RNA-binding protein p5 96.6 0.0039 8.5E-08 51.1 4.8 77 78-154 31-111 (275)
183 PF08952 DUF1866: Domain of un 96.5 0.0081 1.8E-07 45.5 6.0 55 94-156 52-106 (146)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0068 1.5E-07 48.0 5.1 82 77-158 6-99 (176)
185 PF10309 DUF2414: Protein of u 96.3 0.034 7.3E-07 35.7 6.9 55 174-236 5-62 (62)
186 PF15023 DUF4523: Protein of u 96.0 0.034 7.4E-07 41.7 6.7 76 74-156 82-161 (166)
187 KOG4676 Splicing factor, argin 95.9 0.015 3.2E-07 50.6 5.0 76 174-250 7-85 (479)
188 PF07576 BRAP2: BRCA1-associat 95.7 0.13 2.9E-06 37.2 8.8 67 78-145 13-80 (110)
189 PF07576 BRAP2: BRCA1-associat 95.5 0.28 6E-06 35.6 9.8 67 174-242 13-80 (110)
190 KOG2068 MOT2 transcription fac 95.5 0.0058 1.2E-07 52.2 1.1 82 174-255 77-164 (327)
191 KOG2068 MOT2 transcription fac 95.1 0.013 2.9E-07 50.0 2.1 77 79-155 78-161 (327)
192 PF08675 RNA_bind: RNA binding 94.8 0.2 4.3E-06 34.1 6.7 56 175-238 9-64 (87)
193 PF04847 Calcipressin: Calcipr 94.7 0.12 2.7E-06 41.1 6.5 62 187-254 8-71 (184)
194 KOG0804 Cytoplasmic Zn-finger 94.6 0.23 5E-06 44.2 8.5 67 78-145 74-141 (493)
195 KOG2591 c-Mpl binding protein, 94.5 0.1 2.2E-06 47.7 6.2 75 70-150 167-245 (684)
196 KOG2591 c-Mpl binding protein, 94.5 0.14 3E-06 46.8 6.9 75 171-252 172-250 (684)
197 PF04847 Calcipressin: Calcipr 94.4 0.13 2.8E-06 41.0 6.0 63 90-157 7-71 (184)
198 KOG4574 RNA-binding protein (c 94.2 0.064 1.4E-06 51.2 4.5 73 79-156 299-373 (1007)
199 PF15023 DUF4523: Protein of u 93.9 0.24 5.2E-06 37.3 6.1 75 171-253 83-161 (166)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 93.9 0.065 1.4E-06 42.5 3.4 82 173-254 6-98 (176)
201 PF11767 SET_assoc: Histone ly 93.8 0.34 7.4E-06 31.6 6.1 55 89-151 11-65 (66)
202 PF10567 Nab6_mRNP_bdg: RNA-re 93.7 3.8 8.3E-05 34.8 14.0 174 78-252 15-230 (309)
203 PF07292 NID: Nmi/IFP 35 domai 93.3 0.077 1.7E-06 36.7 2.5 74 122-198 1-76 (88)
204 KOG2135 Proteins containing th 93.2 0.045 9.8E-07 48.9 1.6 74 78-157 372-446 (526)
205 KOG2253 U1 snRNP complex, subu 93.0 0.062 1.4E-06 49.9 2.2 112 77-196 39-157 (668)
206 KOG4285 Mitotic phosphoprotein 92.7 0.46 9.9E-06 40.3 6.7 76 174-257 197-273 (350)
207 KOG4285 Mitotic phosphoprotein 92.5 0.75 1.6E-05 39.0 7.7 69 78-153 197-266 (350)
208 KOG2253 U1 snRNP complex, subu 92.0 0.19 4E-06 46.9 4.0 75 168-251 34-108 (668)
209 PF03880 DbpA: DbpA RNA bindin 91.4 0.99 2.1E-05 30.1 6.0 58 185-251 12-74 (74)
210 KOG0804 Cytoplasmic Zn-finger 91.1 0.95 2.1E-05 40.5 7.2 68 174-243 74-142 (493)
211 KOG4574 RNA-binding protein (c 90.2 0.21 4.6E-06 47.9 2.5 76 177-258 301-378 (1007)
212 PF03880 DbpA: DbpA RNA bindin 88.7 1.8 3.9E-05 28.8 5.6 59 88-154 11-74 (74)
213 KOG2135 Proteins containing th 88.1 0.52 1.1E-05 42.4 3.3 75 172-253 370-445 (526)
214 PF11767 SET_assoc: Histone ly 86.8 3.8 8.3E-05 26.7 6.0 55 185-248 11-65 (66)
215 KOG4483 Uncharacterized conser 80.8 4.3 9.2E-05 36.0 5.5 59 74-138 387-446 (528)
216 KOG2318 Uncharacterized conser 76.8 15 0.00033 34.3 8.0 43 217-259 269-313 (650)
217 KOG4410 5-formyltetrahydrofola 76.3 12 0.00027 31.6 6.8 50 173-227 329-378 (396)
218 PRK14548 50S ribosomal protein 74.6 10 0.00023 26.0 5.0 58 80-139 22-81 (84)
219 TIGR03636 L23_arch archaeal ri 72.4 14 0.0003 24.9 5.1 57 80-138 15-73 (77)
220 KOG4213 RNA-binding protein La 71.5 5.6 0.00012 31.3 3.5 70 77-151 110-181 (205)
221 TIGR03636 L23_arch archaeal ri 71.0 19 0.00041 24.2 5.6 58 176-236 15-74 (77)
222 PRK14548 50S ribosomal protein 70.9 18 0.00038 24.9 5.5 58 176-236 22-81 (84)
223 PF03468 XS: XS domain; Inter 68.5 4.4 9.6E-05 29.7 2.3 46 90-137 29-75 (116)
224 PF14111 DUF4283: Domain of un 65.1 7.3 0.00016 29.6 3.1 109 89-207 28-138 (153)
225 KOG4410 5-formyltetrahydrofola 59.8 11 0.00023 32.0 3.2 48 78-130 330-378 (396)
226 PF03468 XS: XS domain; Inter 59.0 19 0.00041 26.3 4.1 56 176-234 10-75 (116)
227 KOG2891 Surface glycoprotein [ 58.9 7.9 0.00017 32.6 2.3 35 77-111 148-194 (445)
228 KOG4365 Uncharacterized conser 57.5 2.2 4.8E-05 38.2 -1.2 76 79-155 4-80 (572)
229 KOG1295 Nonsense-mediated deca 56.7 15 0.00032 32.5 3.7 67 78-144 7-77 (376)
230 KOG2295 C2H2 Zn-finger protein 53.6 2.3 5E-05 39.2 -1.7 68 78-145 231-299 (648)
231 PF07292 NID: Nmi/IFP 35 domai 52.1 10 0.00022 26.3 1.6 27 73-99 47-73 (88)
232 PF15513 DUF4651: Domain of un 49.5 39 0.00085 21.7 3.8 18 93-110 9-26 (62)
233 COG5193 LHP1 La protein, small 48.4 9.1 0.0002 34.0 1.1 61 77-137 173-244 (438)
234 PF10567 Nab6_mRNP_bdg: RNA-re 45.9 64 0.0014 27.7 5.6 85 171-255 12-109 (309)
235 KOG4019 Calcineurin-mediated s 45.8 38 0.00081 26.9 4.0 75 175-255 11-91 (193)
236 PTZ00191 60S ribosomal protein 45.6 80 0.0017 24.1 5.7 56 176-234 83-140 (145)
237 KOG2891 Surface glycoprotein [ 41.5 51 0.0011 27.9 4.5 115 89-209 48-196 (445)
238 KOG4365 Uncharacterized conser 40.0 4.3 9.2E-05 36.4 -2.1 81 175-256 4-84 (572)
239 PF07530 PRE_C2HC: Associated 40.0 75 0.0016 20.7 4.2 64 189-255 2-66 (68)
240 PTZ00191 60S ribosomal protein 39.2 97 0.0021 23.7 5.3 56 80-137 83-140 (145)
241 PF11823 DUF3343: Protein of u 39.1 47 0.001 21.8 3.3 25 217-241 2-26 (73)
242 PF14893 PNMA: PNMA 38.8 25 0.00055 30.8 2.4 25 77-101 17-41 (331)
243 KOG4483 Uncharacterized conser 36.9 73 0.0016 28.6 4.8 58 171-235 388-446 (528)
244 PF02714 DUF221: Domain of unk 36.4 71 0.0015 27.7 4.9 57 122-197 1-57 (325)
245 PF03439 Spt5-NGN: Early trans 36.2 48 0.001 22.5 3.0 35 104-142 33-67 (84)
246 KOG2295 C2H2 Zn-finger protein 34.8 5.4 0.00012 36.9 -2.4 72 174-245 231-302 (648)
247 KOG3424 40S ribosomal protein 33.8 1E+02 0.0022 22.6 4.3 46 185-231 34-84 (132)
248 TIGR02542 B_forsyth_147 Bacter 32.7 1.4E+02 0.003 21.9 4.9 114 86-226 11-129 (145)
249 PRK01178 rps24e 30S ribosomal 32.3 1.8E+02 0.004 20.6 6.2 47 185-232 30-81 (99)
250 PF15407 Spo7_2_N: Sporulation 31.4 21 0.00046 23.3 0.6 19 76-94 25-43 (67)
251 cd01201 Neurobeachin Neurobeac 31.3 1.5E+02 0.0032 21.4 4.9 55 177-236 49-105 (108)
252 CHL00030 rpl23 ribosomal prote 30.3 1.9E+02 0.0042 20.2 5.3 33 176-208 20-54 (93)
253 PF14026 DUF4242: Protein of u 30.2 1.7E+02 0.0037 19.5 5.6 62 81-143 3-70 (77)
254 PTZ00071 40S ribosomal protein 30.1 1.5E+02 0.0032 22.3 4.9 47 185-232 35-87 (132)
255 COG5638 Uncharacterized conser 28.4 4.5E+02 0.0099 23.8 9.0 38 217-254 259-298 (622)
256 KOG4213 RNA-binding protein La 28.1 49 0.0011 26.2 2.2 36 214-250 148-183 (205)
257 PF09707 Cas_Cas2CT1978: CRISP 27.8 1.3E+02 0.0028 20.8 3.9 48 78-127 25-72 (86)
258 PF11411 DNA_ligase_IV: DNA li 27.5 42 0.00091 18.9 1.3 17 88-104 19-35 (36)
259 PF15063 TC1: Thyroid cancer p 27.0 33 0.00071 22.9 0.9 27 79-105 26-52 (79)
260 PRK08559 nusG transcription an 26.4 2E+02 0.0042 22.1 5.3 33 105-141 36-68 (153)
261 PF01282 Ribosomal_S24e: Ribos 25.6 2.1E+02 0.0045 19.5 4.7 47 185-232 12-63 (84)
262 PRK11901 hypothetical protein; 25.2 1.7E+02 0.0037 25.6 5.1 56 82-139 246-304 (327)
263 KOG1295 Nonsense-mediated deca 24.3 91 0.002 27.7 3.4 69 174-242 7-78 (376)
264 KOG0156 Cytochrome P450 CYP2 s 24.2 1.3E+02 0.0027 28.2 4.5 59 82-149 36-97 (489)
265 PF08206 OB_RNB: Ribonuclease 23.7 87 0.0019 19.5 2.4 38 214-252 6-44 (58)
266 PF00276 Ribosomal_L23: Riboso 23.0 1.6E+02 0.0034 20.4 3.8 33 176-208 21-55 (91)
267 smart00596 PRE_C2HC PRE_C2HC d 22.8 1.9E+02 0.004 19.1 3.8 64 189-255 2-66 (69)
268 COG0445 GidA Flavin-dependent 22.2 3.9E+02 0.0085 25.5 7.1 88 121-208 238-335 (621)
269 PF08442 ATP-grasp_2: ATP-gras 21.2 2.8E+02 0.0061 22.4 5.5 56 186-242 25-81 (202)
270 COG5584 Predicted small secret 21.1 2E+02 0.0043 20.3 3.8 30 85-114 29-58 (103)
271 KOG4019 Calcineurin-mediated s 20.2 65 0.0014 25.6 1.5 73 79-156 11-89 (193)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.9e-35 Score=252.47 Aligned_cols=173 Identities=25% Similarity=0.415 Sum_probs=158.0
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||+++++++|+++|+.||+|.+|+|+.|. +++++|||||+|.++++|.+|+..|++..+.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44467899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 044184 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (275)
++.+... ....++|||+|||..+++++|+++|++||.|+.+.++.+..+++++|+|||+|.+.++|++|
T Consensus 183 ~a~p~~~-----------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 183 YARPGGE-----------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred ccccccc-----------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 9865321 12356899999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhCCCccCC--eeEEEEEcccCCcc
Q 044184 233 ISSLDGKELMG--RPLRLKFGQKNDDV 257 (275)
Q Consensus 233 ~~~l~g~~i~g--~~l~v~~a~~~~~~ 257 (275)
|+.||+..+.| +.|.|.|+......
T Consensus 252 i~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHhCCCccCCCceeEEEEECCccccc
Confidence 99999998875 79999999876543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.6e-34 Score=253.70 Aligned_cols=180 Identities=26% Similarity=0.430 Sum_probs=155.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
+..+|||+|||..+++++|+++|+.||+|.+|+|++|+ +|+++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999998 89999999999999999999999999999999999998764
Q ss_pred ccCCCCC-----------------------------------------CCC-------------------------C---
Q 044184 156 KFKKPRP-----------------------------------------QRS-------------------------A--- 166 (275)
Q Consensus 156 ~~~~~~~-----------------------------------------~~~-------------------------~--- 166 (275)
+...... ... .
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 2210000 000 0
Q ss_pred ---------CC---------------------------------------------------------------------
Q 044184 167 ---------SA--------------------------------------------------------------------- 168 (275)
Q Consensus 167 ---------~~--------------------------------------------------------------------- 168 (275)
..
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 00
Q ss_pred ----------------------CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCH
Q 044184 169 ----------------------PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226 (275)
Q Consensus 169 ----------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~ 226 (275)
.......+|||+|||..+++++|+++|++||.|++++++.|..+|.++|||||+|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~ 321 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNY 321 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCH
Confidence 0001123699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 227 ~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
++|.+|+..|||..|+||.|+|.|+..+..
T Consensus 322 ~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 322 DEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999999999999988764
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.2e-34 Score=262.41 Aligned_cols=180 Identities=23% Similarity=0.385 Sum_probs=159.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||+.+++++|+++|..||.|.+|+|+.|+ +|+++|||||+|.+.++|..|+..|||..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 346899999999999999999999999999999999998 9999999999999999999999999999999999999865
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
....................++|||+||+..+++++|+++|+.||.|+.+++..++.+|.++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 53322211111111223345799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCeeEEEEEcccCC
Q 044184 235 SLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 235 ~l~g~~i~g~~l~v~~a~~~~ 255 (275)
.|||..|+|+.|+|.++..+.
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999998754
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-33 Score=222.09 Aligned_cols=176 Identities=26% Similarity=0.437 Sum_probs=159.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
+--|||+.|...++-++|++.|.+||+|.+++|++|. |+++|||+||-|.+.++|++||..|+|.-|.+|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5679999999999999999999999999999999999 999999999999999999999999999999999999999986
Q ss_pred cCCCCCCCCC-----CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHH
Q 044184 157 FKKPRPQRSA-----SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231 (275)
Q Consensus 157 ~~~~~~~~~~-----~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (275)
+......... -.......++||++|++..+++++|++.|.+||.|.++++.++ +||+||+|.+.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 5522211111 1355778899999999999999999999999999999999987 8999999999999999
Q ss_pred HHHHhCCCccCCeeEEEEEcccCCcccc
Q 044184 232 AISSLDGKELMGRPLRLKFGQKNDDVSE 259 (275)
Q Consensus 232 a~~~l~g~~i~g~~l~v~~a~~~~~~~~ 259 (275)
||..+||.+|+|+.|+|.|.+...+...
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCCCCC
Confidence 9999999999999999999998776543
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.1e-31 Score=242.94 Aligned_cols=180 Identities=26% Similarity=0.446 Sum_probs=157.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||..+++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34557899999999999999999999999999999999998 89999999999999999999997 89999999999998
Q ss_pred ehhccCCCCCCCC-CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHH
Q 044184 153 FAKKFKKPRPQRS-ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231 (275)
Q Consensus 153 ~a~~~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (275)
++........... ..........+|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8754332221111 011112336899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCeeEEEEEcccC
Q 044184 232 AISSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 232 a~~~l~g~~i~g~~l~v~~a~~~ 254 (275)
|+..|||..|.|+.|.|.|+...
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999998744
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=4.9e-32 Score=229.70 Aligned_cols=174 Identities=30% Similarity=0.482 Sum_probs=155.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccc-cc--cceee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQE-VS--GRIIR 150 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~--g~~i~ 150 (275)
+.+.-+|||+.||..|+|.||+++|++||.|.+|.|++|+ +|.++|||||.|.+.++|.+|+..||+.. +- ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3456789999999999999999999999999999999999 99999999999999999999999999977 43 45799
Q ss_pred eeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHH
Q 044184 151 VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230 (275)
Q Consensus 151 v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (275)
|++++..+... ...++|||+.|+..++|.+++++|.+||.|+++.|++| ..+.+||||||.|.+.+.|.
T Consensus 111 vk~Ad~E~er~----------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~ 179 (510)
T KOG0144|consen 111 VKYADGERERI----------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAV 179 (510)
T ss_pred ecccchhhhcc----------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHH
Confidence 99998654432 44678999999999999999999999999999999998 67899999999999999999
Q ss_pred HHHHHhCCCc-cCC--eeEEEEEcccCCcccc
Q 044184 231 AAISSLDGKE-LMG--RPLRLKFGQKNDDVSE 259 (275)
Q Consensus 231 ~a~~~l~g~~-i~g--~~l~v~~a~~~~~~~~ 259 (275)
.||+.|||.. +.| .+|.|+||..+.++..
T Consensus 180 ~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 180 AAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 9999999964 554 8999999999877643
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=9.5e-30 Score=237.37 Aligned_cols=168 Identities=27% Similarity=0.448 Sum_probs=151.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccC
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~ 158 (275)
+|||+|||.++|+++|+++|+.||.|.+|+|.+|. +++++|||||+|.+.++|.+|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999 79999999999999999999999999999999999999976322
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 044184 159 KPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238 (275)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 238 (275)
.. ......+|||+|||.++++++|+++|+.||.|..+.++.+ .+|+++|||||+|.+.++|.+|++.+||
T Consensus 82 ~~---------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 82 SL---------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred cc---------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 11 1223568999999999999999999999999999999887 5788999999999999999999999999
Q ss_pred CccCCeeEEEEEcccCCcc
Q 044184 239 KELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 239 ~~i~g~~l~v~~a~~~~~~ 257 (275)
..+.|+.|.|.....+.+.
T Consensus 152 ~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred cEecCceEEEecccccccc
Confidence 9999999999877665544
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.4e-30 Score=218.24 Aligned_cols=206 Identities=25% Similarity=0.311 Sum_probs=177.5
Q ss_pred CcccccCCcchhhhhccccccccccC-CcchhcccCCCCeEEEcCCCCCCCHHHHHHhhccCCc-eeEEEEEeCC--CCC
Q 044184 42 SLSYNFPTRNLCLQVCSTLQDTTVET-KPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEIIKHK--GGK 117 (275)
Q Consensus 42 ~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~--~~~ 117 (275)
.-...|.+.+.+..+...+++.++.+ +....--...+++|||+|||+++++++|++.|++.++ |.+|.+..++ ..+
T Consensus 127 YAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~K 206 (506)
T KOG0117|consen 127 YAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTK 206 (506)
T ss_pred eEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcccccc
Confidence 33556788899999999988887654 4444456677899999999999999999999999997 8899888877 568
Q ss_pred CcceEEEEEcCHHHHHHHHHhcCccc--cccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHH
Q 044184 118 NRNFAFVTMASPEEAQAAVNQFDTQE--VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFF 195 (275)
Q Consensus 118 ~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 195 (275)
++|||||+|.++..|..|-++|-... +.|+.+.|.||.+..... ...+...+.|||+||+..+|++.|+++|
T Consensus 207 NRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d------ed~ms~VKvLYVRNL~~~tTeE~lk~~F 280 (506)
T KOG0117|consen 207 NRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD------EDTMSKVKVLYVRNLMESTTEETLKKLF 280 (506)
T ss_pred ccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCC------hhhhhheeeeeeeccchhhhHHHHHHHH
Confidence 99999999999999999998775544 789999999999755432 2356668899999999999999999999
Q ss_pred hhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCcccccc
Q 044184 196 SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261 (275)
Q Consensus 196 ~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~ 261 (275)
+.||.|..++.++| ||||.|.+.++|.+||+.+||++|.|..|.|.+|++..+++...
T Consensus 281 ~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 281 NEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 99999999988855 99999999999999999999999999999999999988766554
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.5e-29 Score=236.04 Aligned_cols=181 Identities=31% Similarity=0.515 Sum_probs=158.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc----cceeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS----GRIIRV 151 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~i~v 151 (275)
...++|||+|||.++++++|+++|+.||.|.++.++.+.+|.++|||||+|.+.++|.+|++.|+|..+. |+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eehhccCCCCCCC-------CCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeC
Q 044184 152 EFAKKFKKPRPQR-------SASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFA 224 (275)
Q Consensus 152 ~~a~~~~~~~~~~-------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~ 224 (275)
.++.......... ...........+|||+||+..+++++|+++|++||.|.+++++.+ .+|.++|||||.|.
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 8876443221000 001112345678999999999999999999999999999999998 78999999999999
Q ss_pred CHHHHHHHHHHhCCCccCCeeEEEEEcccCCcc
Q 044184 225 TKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 225 ~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~ 257 (275)
+.++|.+|+..|||..++|+.|.|.++..+.+.
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 999999999999999999999999999887654
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=202.30 Aligned_cols=170 Identities=26% Similarity=0.519 Sum_probs=157.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
+..++|.|.-||.++|+++|+.+|...|+|++|++++|+ +|++-||+||.|-++++|++|+..|||..+..++|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 446889999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
++.... -...+|||.+||...+..+|.++|.+||.++..+|+.|.-+|.++|.|||+|+...+|..||+
T Consensus 119 RPSs~~-----------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 119 RPSSDS-----------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred cCChhh-----------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 875432 235689999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCC--eeEEEEEcccCCc
Q 044184 235 SLDGKELMG--RPLRLKFGQKNDD 256 (275)
Q Consensus 235 ~l~g~~i~g--~~l~v~~a~~~~~ 256 (275)
.|||..--| -+|.|+|+.....
T Consensus 188 ~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCccc
Confidence 999988665 7899999987644
No 11
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=1.5e-29 Score=191.99 Aligned_cols=173 Identities=31% Similarity=0.473 Sum_probs=155.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....+|||+||+..++++.|+++|-+.|+|.++.|.+|. ++..+||||++|.++++|..|++-|+...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 346899999999999999999999999999999999999 8999999999999999999999999999999999999977
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCcee-EEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAI 233 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (275)
..... ...-..++||+||...+++..|.++|+.||.++. -.+++++.+|.++|+|||.|++.+.+.+|+
T Consensus 87 s~~~~----------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai 156 (203)
T KOG0131|consen 87 SAHQK----------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAI 156 (203)
T ss_pred ccccc----------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHH
Confidence 62111 1222378999999999999999999999776654 478999999999999999999999999999
Q ss_pred HHhCCCccCCeeEEEEEcccCCccc
Q 044184 234 SSLDGKELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 234 ~~l~g~~i~g~~l~v~~a~~~~~~~ 258 (275)
..|||+.++.+++.|.++..+..+.
T Consensus 157 ~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 157 GSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999998776554
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.2e-28 Score=224.66 Aligned_cols=173 Identities=26% Similarity=0.412 Sum_probs=142.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc-cceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-GRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~i~v~~a~ 155 (275)
..++|||+|||.++++++|+++|+.||.|.+|+|++|.+|+++|||||+|.+.++|.+|++.||+..+. |+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 458999999999999999999999999999999999999999999999999999999999999998874 6665554332
Q ss_pred ccC----------------------------------C---CCCCCC---------------------------------
Q 044184 156 KFK----------------------------------K---PRPQRS--------------------------------- 165 (275)
Q Consensus 156 ~~~----------------------------------~---~~~~~~--------------------------------- 165 (275)
... . ......
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 100 0 000000
Q ss_pred --------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhc--CCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 166 --------ASAPARETQHKLYVSNLSWKVRSTHLREFFSAN--FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 166 --------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
.........++|||+||+..+++++|+++|+.| |.|+.+.++ ++||||+|.+.++|.+|++.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHH
Confidence 000112335789999999999999999999999 888888765 45999999999999999999
Q ss_pred hCCCccCCeeEEEEEcccCCcc
Q 044184 236 LDGKELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 236 l~g~~i~g~~l~v~~a~~~~~~ 257 (275)
|||..|.|+.|+|.|+++....
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred hCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999886543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=4.3e-28 Score=224.02 Aligned_cols=177 Identities=21% Similarity=0.365 Sum_probs=146.2
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccC------------CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcC
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPC------------GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 140 (275)
......++|||+|||+.+|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..||. |+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 344567899999999999999999999975 34555554 4567999999999999999995 99
Q ss_pred ccccccceeeeeehhccCCCCCC-----CC-------------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCce
Q 044184 141 TQEVSGRIIRVEFAKKFKKPRPQ-----RS-------------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPV 202 (275)
Q Consensus 141 ~~~~~g~~i~v~~a~~~~~~~~~-----~~-------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 202 (275)
|..+.|+.|.|............ .. .........++|||+|||..+++++|+++|+.||.+.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 99999999999765433211000 00 0011234567999999999999999999999999999
Q ss_pred eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCC
Q 044184 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 203 ~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~ 255 (275)
.+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++....
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999998999999999999999999999999999999999999999987654
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.5e-28 Score=194.95 Aligned_cols=212 Identities=24% Similarity=0.355 Sum_probs=177.6
Q ss_pred ccccCCcchhhhhccccccccccCCcchh------cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CC
Q 044184 44 SYNFPTRNLCLQVCSTLQDTTVETKPEQT------QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GG 116 (275)
Q Consensus 44 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~ 116 (275)
..+|-.+..+.++...++.-....+.... .......+|||.+||+.+|..+|+++|++||.|..-+|+.|. +|
T Consensus 87 FVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg 166 (360)
T KOG0145|consen 87 FVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTG 166 (360)
T ss_pred eeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 45677788888888888777665554432 233456799999999999999999999999999888999999 99
Q ss_pred CCcceEEEEEcCHHHHHHHHHhcCccccccc--eeeeeehhccCCCCC-------------CCCC---------------
Q 044184 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGR--IIRVEFAKKFKKPRP-------------QRSA--------------- 166 (275)
Q Consensus 117 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~--~i~v~~a~~~~~~~~-------------~~~~--------------- 166 (275)
.++|.+||.|....+|+.||+.|||..-.|. +|.|+|+........ +..+
T Consensus 167 ~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~ 246 (360)
T KOG0145|consen 167 LSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLL 246 (360)
T ss_pred eecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhcccccc
Confidence 9999999999999999999999999986554 699999875421100 0000
Q ss_pred ------------------------CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEE
Q 044184 167 ------------------------SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222 (275)
Q Consensus 167 ------------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~ 222 (275)
.........+|||.||..+.+|.-|-++|++||.|..+++++|..+.++||||||.
T Consensus 247 ~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVt 326 (360)
T KOG0145|consen 247 NPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 326 (360)
T ss_pred chhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEE
Confidence 01123346899999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCCccCCeeEEEEEcccCC
Q 044184 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 223 f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~ 255 (275)
+.+-++|..||..|||..+++|.|.|+|...+.
T Consensus 327 MtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 327 MTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred ecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 999999999999999999999999999987654
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.2e-27 Score=218.62 Aligned_cols=173 Identities=23% Similarity=0.333 Sum_probs=144.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||. .+++++|+++|+.||.|.+|+|++++ +|+|||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3568999999998 69999999999999999999998864 689999999999999999999999999999999998
Q ss_pred hccCCCCCCCC-------------C-------------CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCC--ceeEEE
Q 044184 155 KKFKKPRPQRS-------------A-------------SAPARETQHKLYVSNLSWKVRSTHLREFFSANFN--PVSSKV 206 (275)
Q Consensus 155 ~~~~~~~~~~~-------------~-------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~i 206 (275)
+.......... . ......+..+|||+|||..+++++|+++|+.||. +..+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 65422111000 0 0011245679999999999999999999999888 566666
Q ss_pred eeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee------EEEEEcccC
Q 044184 207 VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP------LRLKFGQKN 254 (275)
Q Consensus 207 ~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~------l~v~~a~~~ 254 (275)
... .+ ..+|+|||+|.+.++|.+|+..|||..|.|+. |+|+|+++.
T Consensus 429 ~~~-~~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPK-DN-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecC-CC-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 543 23 35899999999999999999999999999985 999999764
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.2e-27 Score=218.61 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhc--Cccccccceeeeeeh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF--DTQEVSGRIIRVEFA 154 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~i~v~~a 154 (275)
++++|||+|||..+++++|+++|+.||.|.+|.+++ .+|||||+|.+.++|.+|+..+ ++..+.|+.|.|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 368999999999999999999999999999999985 3589999999999999999864 678899999999999
Q ss_pred hccCCCCCCCCC-CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 044184 155 KKFKKPRPQRSA-SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233 (275)
Q Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (275)
......+..... .........+|+|.||++.+++++|+++|++||.|.++.++.+.. +++|||+|.+.++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAK 151 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHH
Confidence 754322221100 111123345799999999999999999999999999998876532 468999999999999999
Q ss_pred HHhCCCccCC--eeEEEEEcccCC
Q 044184 234 SSLDGKELMG--RPLRLKFGQKND 255 (275)
Q Consensus 234 ~~l~g~~i~g--~~l~v~~a~~~~ 255 (275)
+.|||..|.| +.|+|.|++...
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCC
Confidence 9999999964 589999998754
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=211.58 Aligned_cols=178 Identities=26% Similarity=0.465 Sum_probs=156.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
.||||++||+.++.++|.++|+.+|+|..+.++.++ ++.++||+||.|.-.++++.|+....+..+.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999999999 7899999999999999999999999999999999999998765
Q ss_pred CCCCCCCCC---------------CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEE
Q 044184 158 KKPRPQRSA---------------SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222 (275)
Q Consensus 158 ~~~~~~~~~---------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~ 222 (275)
.+....... ......+...|.|+|||+.+.+.+|+.+|+.||.|+++.|.....++. .|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEE
Confidence 544311110 011234478999999999999999999999999999999997655555 4999999
Q ss_pred eCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCcc
Q 044184 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 223 f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~ 257 (275)
|.+..+|.+|++.+||..|.||+|.|.||-++...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 99999999999999999999999999999988654
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.5e-27 Score=217.97 Aligned_cols=177 Identities=18% Similarity=0.258 Sum_probs=147.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||..+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999998 89999999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCC-----------------CCCCCCCCcEEEEecCCCCC----------CHhHHHHHHhhcCCceeEEEee
Q 044184 156 KFKKPRPQRSA-----------------SAPARETQHKLYVSNLSWKV----------RSTHLREFFSANFNPVSSKVVF 208 (275)
Q Consensus 156 ~~~~~~~~~~~-----------------~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~v~~~~i~~ 208 (275)
........... ......+..+|+|.|+.... ..++|+++|++||.|+.+.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 43321111000 01123456789999996421 2367999999999999999886
Q ss_pred eC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 209 ES---NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 209 ~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
+. .++...|+|||+|.+.++|++|+..|||..|.|+.|.|.|...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 53 3355689999999999999999999999999999999999754
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6e-28 Score=204.92 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=176.3
Q ss_pred ccccCCcchhhhhccccccccc--------cCCcchhcccC--CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeC
Q 044184 44 SYNFPTRNLCLQVCSTLQDTTV--------ETKPEQTQKQN--IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH 113 (275)
Q Consensus 44 s~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 113 (275)
...|.++..+..+...+++... ..++.....++ ..++|||+.|++.++|.+++++|++||.|++|.|++|
T Consensus 80 Fv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd 159 (510)
T KOG0144|consen 80 FVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD 159 (510)
T ss_pred EEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec
Confidence 3456777777777666666532 11222222333 4789999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEcCHHHHHHHHHhcCccc-ccc--ceeeeeehhccCCCCCCCC-------------------------
Q 044184 114 KGGKNRNFAFVTMASPEEAQAAVNQFDTQE-VSG--RIIRVEFAKKFKKPRPQRS------------------------- 165 (275)
Q Consensus 114 ~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~i~v~~a~~~~~~~~~~~------------------------- 165 (275)
..+.+||||||.|.+.+.|..||+.|||.. +.| .+|.|+|++.++....++.
T Consensus 160 ~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~ 239 (510)
T KOG0144|consen 160 PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGA 239 (510)
T ss_pred ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhc
Confidence 999999999999999999999999999976 554 5799999974331000000
Q ss_pred --------------------------------------------------------------------------------
Q 044184 166 -------------------------------------------------------------------------------- 165 (275)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (275)
T Consensus 240 l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~s 319 (510)
T KOG0144|consen 240 LSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPS 319 (510)
T ss_pred cCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 044184 166 -------------------------------------------------------------------------------- 165 (275)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (275)
T Consensus 320 s~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~ 399 (510)
T KOG0144|consen 320 SSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAP 399 (510)
T ss_pred ccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhccc
Confidence
Q ss_pred ----------------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHH
Q 044184 166 ----------------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229 (275)
Q Consensus 166 ----------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A 229 (275)
...........+||.+||.+.-+.+|-..|..||+|+..++..|+.|+.+++|+||.|++..+|
T Consensus 400 ~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa 479 (510)
T KOG0144|consen 400 GLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSA 479 (510)
T ss_pred chhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhh
Confidence 0012235567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCeeEEEEEcccCCccc
Q 044184 230 EAAISSLDGKELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 230 ~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 258 (275)
.+||..|||..|++++++|...+++.+..
T Consensus 480 ~~aI~amngfQig~KrlkVQlk~~~~np~ 508 (510)
T KOG0144|consen 480 QNAISAMNGFQIGSKRLKVQLKRDRNNPY 508 (510)
T ss_pred HHHHHHhcchhhccccceEEeeeccCCCC
Confidence 99999999999999999999999887653
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.9e-27 Score=203.63 Aligned_cols=180 Identities=27% Similarity=0.446 Sum_probs=154.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
.-.|+|+|||+.+.+.+|..+|+.||.|..|.|++..+|+-.|||||+|....+|..|+..+|+..|+||+|-|.||-..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 46899999999999999999999999999999998887777799999999999999999999999999999999998533
Q ss_pred CCCCCC-------------------------------------------CC--------------------C--C-----
Q 044184 158 KKPRPQ-------------------------------------------RS--------------------A--S----- 167 (275)
Q Consensus 158 ~~~~~~-------------------------------------------~~--------------------~--~----- 167 (275)
...... .. . +
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 210000 00 0 0
Q ss_pred ---------CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh--
Q 044184 168 ---------APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL-- 236 (275)
Q Consensus 168 ---------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-- 236 (275)
........+|||+|||+++++++|.++|++||.+....++.++.|+.++|.|||.|.+..+|++||.+.
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 001123479999999999999999999999999999999999999999999999999999999999977
Q ss_pred ---CC-CccCCeeEEEEEcccCCcc
Q 044184 237 ---DG-KELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 237 ---~g-~~i~g~~l~v~~a~~~~~~ 257 (275)
.| ..|.||.|.|..|-.+.+-
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHH
Confidence 34 6788999999999887653
No 21
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.1e-28 Score=193.46 Aligned_cols=181 Identities=27% Similarity=0.411 Sum_probs=158.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc-ccc--ceeeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE-VSG--RIIRVEF 153 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~i~v~~ 153 (275)
.+++||||.|.+.-.|+|++.+|..||.|.+|.+++..+|.+||||||.|.+.-+|..||..|||.. +-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6799999999999999999999999999999999999999999999999999999999999999976 433 4689988
Q ss_pred hhccCCCCCCC---------------------------------------------------------------------
Q 044184 154 AKKFKKPRPQR--------------------------------------------------------------------- 164 (275)
Q Consensus 154 a~~~~~~~~~~--------------------------------------------------------------------- 164 (275)
++..+.+.-++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 86211000000
Q ss_pred --------------------------------------C-----------------------------------------
Q 044184 165 --------------------------------------S----------------------------------------- 165 (275)
Q Consensus 165 --------------------------------------~----------------------------------------- 165 (275)
.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0
Q ss_pred -------------------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCH
Q 044184 166 -------------------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK 226 (275)
Q Consensus 166 -------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~ 226 (275)
.........++|||..||.+..+.+|.+.|-+||.|++.++..|+.|..+|+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0012346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccCCeeEEEEEcccCCcc
Q 044184 227 EEAEAAISSLDGKELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 227 ~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~ 257 (275)
.+|+.||.+|||+.|+-++|+|.+.+++...
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999988753
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=195.18 Aligned_cols=166 Identities=21% Similarity=0.415 Sum_probs=146.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCcccc-ccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEV-SGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g~~i~v~~ 153 (275)
...+-|||+.||.++.|++|.-+|.+.|.|-++++++|+ +|.++|||||+|.+.+.|++|++.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 346899999999999999999999999999999999998 999999999999999999999999999997 489999986
Q ss_pred hhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcC-CceeEEEeeeC-CCCCcccEEEEEeCCHHHHHH
Q 044184 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF-NPVSSKVVFES-NEGRSAGYGFVSFATKEEAEA 231 (275)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~ 231 (275)
+.. .++|||+|+|..+++++|.+.|++.+ ||+.+.+...+ ...+++|||||+|.++..|..
T Consensus 161 Sva-----------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~ 223 (506)
T KOG0117|consen 161 SVA-----------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAM 223 (506)
T ss_pred eee-----------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHH
Confidence 653 68899999999999999999999975 45666655443 346889999999999999999
Q ss_pred HHHHh-CC-CccCCeeEEEEEcccCCccc
Q 044184 232 AISSL-DG-KELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 232 a~~~l-~g-~~i~g~~l~v~~a~~~~~~~ 258 (275)
|-+.| +| .++-|+.+.|.||.++.+..
T Consensus 224 aRrKl~~g~~klwgn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 224 ARRKLMPGKIKLWGNAITVDWAEPEEEPD 252 (506)
T ss_pred HHhhccCCceeecCCcceeeccCcccCCC
Confidence 98776 44 45779999999999987653
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=4.5e-26 Score=184.75 Aligned_cols=149 Identities=29% Similarity=0.456 Sum_probs=139.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccC
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~ 158 (275)
..|||+|||.++++.+|+.+|++||.|.+|.|++ .||||..++...|+.||+.|||..++|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 4699999999999999999999999999999985 49999999999999999999999999999999988753
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 044184 159 KPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238 (275)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 238 (275)
....++|+|+|+...++.++|+..|++||.|+++.|+. +|+||.|...++|..|++.|+|
T Consensus 75 ------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 75 ------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred ------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccc
Confidence 34477899999999999999999999999999999994 5999999999999999999999
Q ss_pred CccCCeeEEEEEcccCC
Q 044184 239 KELMGRPLRLKFGQKND 255 (275)
Q Consensus 239 ~~i~g~~l~v~~a~~~~ 255 (275)
.++.|++++|+.+.+.-
T Consensus 135 ~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 135 TEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cccccceeeeeeecccc
Confidence 99999999999988764
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.1e-24 Score=196.95 Aligned_cols=172 Identities=26% Similarity=0.357 Sum_probs=142.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
.++|||+|||..+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5899999999999999999999999999999999999 789999999999999999999999999999999999999642
Q ss_pred cCCCCC---------------------------------C---------CCC----------------------------
Q 044184 157 FKKPRP---------------------------------Q---------RSA---------------------------- 166 (275)
Q Consensus 157 ~~~~~~---------------------------------~---------~~~---------------------------- 166 (275)
...... . ...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 110000 0 000
Q ss_pred ---------CCCCCCCCcEEEEecCCCCCC----------HhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHH
Q 044184 167 ---------SAPARETQHKLYVSNLSWKVR----------STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227 (275)
Q Consensus 167 ---------~~~~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~ 227 (275)
.........+|+|.||....+ .+||++.|++||+|+.+.+.. ....|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHH
Confidence 000124567899999955433 368999999999999988863 345799999999999
Q ss_pred HHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 228 EAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 228 ~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
+|.+|++.|||..++|+.|.|.|...
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99999999999999999999999754
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.5e-26 Score=190.61 Aligned_cols=179 Identities=23% Similarity=0.389 Sum_probs=155.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
.++||||.|.+++.|+.||..|.+||+|++|.+--|+ |++++|||||+|+-.+.|.-|++.|||.-++||.|+|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5899999999999999999999999999999999999 999999999999999999999999999999999999984332
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 044184 157 FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (275)
-....+--..........++|||..+..+++++||+..|+.||.++.+.+-+++.++.++|||||+|.+..+...|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 11111000001122345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCeeEEEEEcccCCc
Q 044184 237 DGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 237 ~g~~i~g~~l~v~~a~~~~~ 256 (275)
|=+.++|+.|+|-.+-...+
T Consensus 273 NlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred chhhcccceEecccccCCCc
Confidence 99999999999988765543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.3e-24 Score=186.72 Aligned_cols=161 Identities=25% Similarity=0.440 Sum_probs=148.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccC
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~ 158 (275)
..|||| +.+|+..|.++|+++|+|.++++.+|. + +-|||||.|.+..+|.+|+..+|...+.|++|++.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 358999 899999999999999999999999999 6 99999999999999999999999999999999999997422
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 044184 159 KPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238 (275)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 238 (275)
.. |||.||+..++...|.++|+.||.|+++++..+... ++|| ||+|+++++|++|++.+||
T Consensus 77 ~~----------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 77 SL----------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred ce----------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcC
Confidence 21 999999999999999999999999999999998544 8999 9999999999999999999
Q ss_pred CccCCeeEEEEEcccCCcccccccc
Q 044184 239 KELMGRPLRLKFGQKNDDVSESNKE 263 (275)
Q Consensus 239 ~~i~g~~l~v~~a~~~~~~~~~~~~ 263 (275)
..+.|+.|.|.....++++.....+
T Consensus 138 ~ll~~kki~vg~~~~~~er~~~~~~ 162 (369)
T KOG0123|consen 138 MLLNGKKIYVGLFERKEEREAPLGE 162 (369)
T ss_pred cccCCCeeEEeeccchhhhcccccc
Confidence 9999999999999988876655544
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=2e-24 Score=193.82 Aligned_cols=176 Identities=27% Similarity=0.480 Sum_probs=153.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCC----CcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK----NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
++|||.||++.++.++|...|...|.|.++.|...+++. +.|||||+|.+.++|..|++.|+|..++|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999988776553 4599999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
........ +.........+.|.|+|||+..+..+++++|..||.+..+++......+.++|||||.|-++.+|.+|++
T Consensus 596 ~~k~~~~~--gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 596 ENKPASTV--GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred cCcccccc--ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 83222221 2222334446899999999999999999999999999999998875567789999999999999999999
Q ss_pred HhCCCccCCeeEEEEEcccCCc
Q 044184 235 SLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 235 ~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
+|.+..+.||+|.+.||.....
T Consensus 674 al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 674 ALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hhcccceechhhheehhccchH
Confidence 9999999999999999998765
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=1.1e-24 Score=190.68 Aligned_cols=187 Identities=24% Similarity=0.431 Sum_probs=162.1
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
.++...++||+-.|+...+..+|.++|+.+|.|..|.++.|. +++++|.|||+|.+.+.+..|+. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 556678999999999999999999999999999999999999 89999999999999999999995 8999999999999
Q ss_pred eehhccCCCCCCCCCCCC---CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHH
Q 044184 152 EFAKKFKKPRPQRSASAP---ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEE 228 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~---~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~ 228 (275)
......+........... ...+-..|||+||.+.+++++|+.+|++||.|..+.+.+|..+|.++|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 887655443221111111 11222239999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCCccCCeeEEEEEcccCCccccc
Q 044184 229 AEAAISSLDGKELMGRPLRLKFGQKNDDVSES 260 (275)
Q Consensus 229 A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~ 260 (275)
|++|+..|||+++.|+.|+|......-+.+..
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a 364 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEA 364 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccc
Confidence 99999999999999999999998887766544
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.7e-23 Score=180.88 Aligned_cols=221 Identities=22% Similarity=0.331 Sum_probs=186.5
Q ss_pred cccceeecccCCCCCcccccCCcchhhhhccccccccccCCcchh-cccCCCCeEEEcCCCCCCCHHHHHHhhccCCcee
Q 044184 28 PHCIKLLHSSNSTPSLSYNFPTRNLCLQVCSTLQDTTVETKPEQT-QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV 106 (275)
Q Consensus 28 ~~~~~~~~sss~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~ 106 (275)
+..++ ... ++.+....+|..+..+..+..+++.....+++... ...++...|||.||++.++...|.+.|+.||.|.
T Consensus 27 s~rvc-~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~il 104 (369)
T KOG0123|consen 27 SIRVC-RDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNIL 104 (369)
T ss_pred eEEEe-ecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCee
Confidence 55555 445 45555567789999999999988888887777655 4445556699999999999999999999999999
Q ss_pred EEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCC
Q 044184 107 DVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKV 186 (275)
Q Consensus 107 ~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 186 (275)
+|++..+.+| ++|| ||+|.+++.|.+|+..+||..+.|+.|.|-..........+.. . ....-..+++.+++...
T Consensus 105 S~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~--~-~~~~~t~v~vk~~~~~~ 179 (369)
T KOG0123|consen 105 SCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLG--E-YKKRFTNVYVKNLEEDS 179 (369)
T ss_pred EEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccccc--c-hhhhhhhhheecccccc
Confidence 9999999988 9999 9999999999999999999999999999987654333222211 1 45567789999999999
Q ss_pred CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 187 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
+++.|.++|..+|.+..+.++.+ ..+.++||+||.|.++++|..|++.|||..+.|..+.|..+..+.+
T Consensus 180 ~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 180 TDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred chHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchh
Confidence 99999999999999999999887 4555999999999999999999999999999999999999887443
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=8.3e-23 Score=172.85 Aligned_cols=177 Identities=20% Similarity=0.419 Sum_probs=156.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||++|++.++++.|++.|..||.|.+|.+++|+ +++++||+||+|.+.+.+.+++.. ....++|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 57899999999999999999999999999999999999 999999999999999998888873 5677999999999887
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
+......... .....++||++||..+++++++++|.+||.|..+.++.|..+..++||+||.|.+++++.+++.
T Consensus 84 ~r~~~~~~~~-----~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~- 157 (311)
T KOG4205|consen 84 SREDQTKVGR-----HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL- 157 (311)
T ss_pred Cccccccccc-----ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-
Confidence 6443322211 2267799999999999999999999998888899999999999999999999999999999988
Q ss_pred hCCCccCCeeEEEEEcccCCccccc
Q 044184 236 LDGKELMGRPLRLKFGQKNDDVSES 260 (275)
Q Consensus 236 l~g~~i~g~~l~v~~a~~~~~~~~~ 260 (275)
..-..|.|+.+.|..|.+++.....
T Consensus 158 ~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 158 QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cceeeecCceeeEeeccchhhcccc
Confidence 6778899999999999998765543
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.5e-22 Score=162.90 Aligned_cols=143 Identities=31% Similarity=0.474 Sum_probs=123.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...+||||+||...+||+-|..+|+..|.|++++|+.| .+.|.|+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 34689999999999999999999999999999999876 35566655
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
.+..... .....-..+||+.|...++.++|++.|.+||.|.+.+|++|..|+++||||||.|-+.++|++||..
T Consensus 50 ~p~nQsk------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 50 APGNQSK------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred CcccCCC------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 4311111 1122245799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccCCeeEEEEEcccCCccc
Q 044184 236 LDGKELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 236 l~g~~i~g~~l~v~~a~~~~~~~ 258 (275)
|||.-|++|.|+-.||..|....
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~ 146 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEM 146 (321)
T ss_pred hCCeeeccceeeccccccCcccc
Confidence 99999999999999999887443
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=1.9e-20 Score=171.42 Aligned_cols=79 Identities=18% Similarity=0.400 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||+++++++|+++|+.||.|.+++|.+++ +|.++|||||+|.+.++|.+|+..||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34799999999999999999999999999999999998 78999999999999999999999999999999999998865
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=3.2e-19 Score=141.00 Aligned_cols=169 Identities=24% Similarity=0.368 Sum_probs=143.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----hhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKN----LFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
+..||||.||+..+..++|+. +|+.||.|.+|...+ +.+.+|.|||.|.+.+.|-.|++.|+|..+.|+.+++.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 345999999999999999988 999999999987654 56889999999999999999999999999999999999
Q ss_pred ehhccCCCCCCCC-------------------------C--------------CCCCCCCCcEEEEecCCCCCCHhHHHH
Q 044184 153 FAKKFKKPRPQRS-------------------------A--------------SAPARETQHKLYVSNLSWKVRSTHLRE 193 (275)
Q Consensus 153 ~a~~~~~~~~~~~-------------------------~--------------~~~~~~~~~~l~v~nl~~~~~~~~l~~ 193 (275)
||.....-..+.. + ......+...+++.|||...+.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9874432111100 0 012356778999999999999999999
Q ss_pred HHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEEEcc
Q 044184 194 FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-GRPLRLKFGQ 252 (275)
Q Consensus 194 ~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~-g~~l~v~~a~ 252 (275)
+|.+|.|..+++.+.. -++.|||+|.+...|..|...+.|..|. +..+.|.+++
T Consensus 166 lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999854 3678999999999999999999999888 8999998875
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.6e-18 Score=132.29 Aligned_cols=169 Identities=25% Similarity=0.400 Sum_probs=135.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..+++|||+|||.++.+.+|+++|-+||.|..|.+..-+ ....||||+|++..+|+.||..-+|..++|..|+|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 346899999999999999999999999999999875433 245799999999999999999999999999999999998
Q ss_pred ccCCCCCCCC---------------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEE
Q 044184 156 KFKKPRPQRS---------------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGF 220 (275)
Q Consensus 156 ~~~~~~~~~~---------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~af 220 (275)
.......... ...+.......|.|.+||.+-+.++|++++.+-|.|--..+.+| |++.
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~Gv 154 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGV 154 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------ccee
Confidence 6642221111 01233445678999999999999999999999777766666655 3789
Q ss_pred EEeCCHHHHHHHHHHhCCCccC--CeeEEEEEccc
Q 044184 221 VSFATKEEAEAAISSLDGKELM--GRPLRLKFGQK 253 (275)
Q Consensus 221 V~f~~~~~A~~a~~~l~g~~i~--g~~l~v~~a~~ 253 (275)
|+|...++.+-|+..|....+. |-...+..-..
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEeccc
Confidence 9999999999999999877655 55555544333
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=2.2e-19 Score=157.54 Aligned_cols=170 Identities=25% Similarity=0.390 Sum_probs=134.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
+.|||+||++++++++|+.+|++||.|..|.+..|. +|+++||+||+|.+.++|++|+..|||..+-|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 349999999999999999999999999999999998 9999999999999999999999999999999999998654321
Q ss_pred CCCCCC------------CC-------------------------------------------------CCCCCC-----
Q 044184 158 KKPRPQ------------RS-------------------------------------------------ASAPAR----- 171 (275)
Q Consensus 158 ~~~~~~------------~~-------------------------------------------------~~~~~~----- 171 (275)
-..... .. ....+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 100000 00 000111
Q ss_pred --CCCcEEEEecC--CCCCC--------HhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 044184 172 --ETQHKLYVSNL--SWKVR--------STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239 (275)
Q Consensus 172 --~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 239 (275)
.+..|+.|.|+ |...| .+++.+-+.+||+|..|.+-+ .+.|+.||.|.+.++|..|+++|||.
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~-----ns~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDK-----NSAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEcc-----CCCceEEEecCcHHHHHHHHHHHhhh
Confidence 34556677776 22222 267888889999998877653 24489999999999999999999999
Q ss_pred ccCCeeEEEEEccc
Q 044184 240 ELMGRPLRLKFGQK 253 (275)
Q Consensus 240 ~i~g~~l~v~~a~~ 253 (275)
.|.|+.|.+.|-..
T Consensus 514 WF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 514 WFAGRMITAKYLPL 527 (549)
T ss_pred hhccceeEEEEeeh
Confidence 99999999998654
No 36
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=8.9e-18 Score=145.76 Aligned_cols=173 Identities=23% Similarity=0.379 Sum_probs=138.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
....|-+++||+++|+++|+++|+.++ |+++.+.+ .+|+..|-|||+|.+.+++++|++ .+...+..|-|.|..+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 345788999999999999999999996 77754443 369999999999999999999998 477888899999988765
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeE-EEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 157 FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
......-.............|.+++||+.++++||.++|+. -.|+.. .++.....+++.|.|||+|++.+.|++|+.
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaG-L~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~- 163 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAG-LEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG- 163 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcC-CcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-
Confidence 54433333333333356779999999999999999999998 555544 335555677899999999999999999998
Q ss_pred hCCCccCCeeEEEEEcccC
Q 044184 236 LDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 236 l~g~~i~g~~l~v~~a~~~ 254 (275)
-|...|+-|-|.|-.+...
T Consensus 164 rhre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 164 RHRENIGHRYIEVFRSSRA 182 (510)
T ss_pred HHHHhhccceEEeehhHHH
Confidence 4777888899998876544
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=1.9e-17 Score=137.82 Aligned_cols=186 Identities=22% Similarity=0.326 Sum_probs=148.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeE--------EEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccce
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD--------VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRI 148 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 148 (275)
.+..|||.|||.++|.+++.++|+.+|.|.. |++.++..|..+|-|.+.|...+++.-|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3567999999999999999999999997643 89999999999999999999999999999999999999999
Q ss_pred eeeeehhccCCCCC---------------------------CCCCCCCCCCCCcEEEEecCCC----CCC-------HhH
Q 044184 149 IRVEFAKKFKKPRP---------------------------QRSASAPARETQHKLYVSNLSW----KVR-------STH 190 (275)
Q Consensus 149 i~v~~a~~~~~~~~---------------------------~~~~~~~~~~~~~~l~v~nl~~----~~~-------~~~ 190 (275)
|+|+.|+-+.+... +...........++|.|.|+=. ..+ .++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99998863321100 0001233455678899999822 223 356
Q ss_pred HHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCccccccccccc
Q 044184 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEED 266 (275)
Q Consensus 191 l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~ 266 (275)
|.+-+.+||.|.++.+. + ..+.|.+-|.|.+.++|..||+.|+|..+.||.|..+....+......+..++.
T Consensus 293 l~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~eet~~D~ 364 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQTEETNEDE 364 (382)
T ss_pred HHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeeeecccchH
Confidence 77778897776666654 3 567889999999999999999999999999999999999998877666444443
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=3.2e-18 Score=131.10 Aligned_cols=83 Identities=34% Similarity=0.586 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||+.+++++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|+.|+..|++..+.|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 346789999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred hccC
Q 044184 155 KKFK 158 (275)
Q Consensus 155 ~~~~ 158 (275)
....
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7543
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=9.9e-18 Score=128.42 Aligned_cols=88 Identities=38% Similarity=0.633 Sum_probs=82.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|+..+...
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99876543
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=8.1e-17 Score=137.73 Aligned_cols=175 Identities=26% Similarity=0.469 Sum_probs=145.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcc-CCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
.|.+||.|||+++.+.+|+++|.. -|.|+.|.++.|..|+++|+|.|+|++++.+++|++.||...+.||+|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 467999999999999999999976 6899999999999999999999999999999999999999999999999975432
Q ss_pred cCCCC-----------------------------------------------CCCC-C----------------------
Q 044184 157 FKKPR-----------------------------------------------PQRS-A---------------------- 166 (275)
Q Consensus 157 ~~~~~-----------------------------------------------~~~~-~---------------------- 166 (275)
....+ .+.. .
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 11000 0000 0
Q ss_pred ----CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 167 ----SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 167 ----~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
.....+....+||.||.+.+..+.|++.|..-|.+..+.+-.|+ .|.++|+|.|+|.++-.|..||..+++.-+.
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00123345679999999999999999999998888888888874 4689999999999999999999999987788
Q ss_pred CeeEEEEEccc
Q 044184 243 GRPLRLKFGQK 253 (275)
Q Consensus 243 g~~l~v~~a~~ 253 (275)
+++..+.+.+-
T Consensus 283 ~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 283 DRRMTVRLDRI 293 (608)
T ss_pred cccceeecccc
Confidence 88888887544
No 41
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.2e-17 Score=133.35 Aligned_cols=157 Identities=28% Similarity=0.517 Sum_probs=132.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccC
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~ 158 (275)
..|||++||+.+.+.+|..+|..||.+.++.+. .||+||+|.+..+|..|+..+++..+.|-.+.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 368999999999999999999999999999874 4799999999999999999999999998889999998543
Q ss_pred CCCCC-CC--------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHH
Q 044184 159 KPRPQ-RS--------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEA 229 (275)
Q Consensus 159 ~~~~~-~~--------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A 229 (275)
..... .. ....+....+.+.|.++...+...+|.++|.++|.+..... ..+++||+|...++|
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDA 146 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhh
Confidence 22211 11 11223456778999999999999999999999888844333 366899999999999
Q ss_pred HHHHHHhCCCccCCeeEEEEE
Q 044184 230 EAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 230 ~~a~~~l~g~~i~g~~l~v~~ 250 (275)
.+|+..|+|..+.|+.|.+..
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhcchhccchhhcCceeeecc
Confidence 999999999999999999943
No 42
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=3e-16 Score=123.37 Aligned_cols=164 Identities=23% Similarity=0.286 Sum_probs=125.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC--CCCCcceEEEEEcCHHHHHHHHHhcCccccc---ccee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK--GGKNRNFAFVTMASPEEAQAAVNQFDTQEVS---GRII 149 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i 149 (275)
...-|||||.+||.++...+|..+|..|---+.+.+.... ....+-+||+.|.+.+.|.+|++.|||..++ +.+|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3446999999999999999999999998666666554333 3345679999999999999999999999975 7889
Q ss_pred eeeehhccCCCCCCCCCC--------------------------------------------------------------
Q 044184 150 RVEFAKKFKKPRPQRSAS-------------------------------------------------------------- 167 (275)
Q Consensus 150 ~v~~a~~~~~~~~~~~~~-------------------------------------------------------------- 167 (275)
++++++...+........
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 999987432211110000
Q ss_pred -------------CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 168 -------------APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 168 -------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
........+|||.||...++|++|+++|+.|-|..-.+|-- .+| ...||++|.+.+.|..||.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCC--cceEeecHHHHHHHHHHHH
Confidence 00112235799999999999999999999998887666542 233 4589999999999999999
Q ss_pred HhCCCccC
Q 044184 235 SLDGKELM 242 (275)
Q Consensus 235 ~l~g~~i~ 242 (275)
.|.|..|-
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99998764
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=143.80 Aligned_cols=174 Identities=29% Similarity=0.388 Sum_probs=140.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++.++|+|||..+..++|...|..||.|..+.+. +.| -.++|+|.+..+|.+|.+.|....+...++++.|
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc---ceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 55667899999999999999999999999999999554 322 2499999999999999999999999999999988
Q ss_pred hhccCCCCC-------------------CC-CC-------C-C-----------CCCCCCcEEEEecCCCCCCHhHHHHH
Q 044184 154 AKKFKKPRP-------------------QR-SA-------S-A-----------PARETQHKLYVSNLSWKVRSTHLREF 194 (275)
Q Consensus 154 a~~~~~~~~-------------------~~-~~-------~-~-----------~~~~~~~~l~v~nl~~~~~~~~l~~~ 194 (275)
+...-.... ++ .. . . ......++|||.||++..+.+++..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 763322100 00 00 0 0 01112234999999999999999999
Q ss_pred HhhcCCceeEEEeeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 195 FSANFNPVSSKVVFESNE---GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 195 f~~~g~v~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
|...|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|..+.|+.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999888988888765432 2355999999999999999999999999999999999998
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=7.1e-16 Score=131.03 Aligned_cols=251 Identities=20% Similarity=0.261 Sum_probs=170.5
Q ss_pred ChhhhhhhhhhcccCCCCCccccCCCCcccceeecccCCCCCc----ccccCCcchhhhhccccccccccCC-----cch
Q 044184 1 MAALEAAATSIFLTNHPFSFSCLFPKLPHCIKLLHSSNSTPSL----SYNFPTRNLCLQVCSTLQDTTVETK-----PEQ 71 (275)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~sss~~~~~----s~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 71 (275)
|+++++|++++ +++...|+.-..++++...|-.... .++........++.+..+....... ...
T Consensus 71 m~d~~sAvtmv-------~~y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~ 143 (492)
T KOG1190|consen 71 MADEESAVTMV-------NYYTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGN 143 (492)
T ss_pred hcchhhhhhee-------ecccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccc
Confidence 78899999988 7888878887777665433222111 1111111111112221111111100 011
Q ss_pred hcccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc-c-cee
Q 044184 72 TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-G-RII 149 (275)
Q Consensus 72 ~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g-~~i 149 (275)
...+..--+++|.|+-+.++-+-|..+|++||.|..|.-. .+++.. .|.|+|.+.+.|..|...|+|+.|. | +.|
T Consensus 144 ~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF-~Knn~F--QALvQy~d~~sAq~AK~aLdGqnIyngcCtL 220 (492)
T KOG1190|consen 144 EDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITF-TKNNGF--QALVQYTDAVSAQAAKLALDGQNIYNGCCTL 220 (492)
T ss_pred cCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEE-ecccch--hhhhhccchhhHHHHHHhccCCcccCceeEE
Confidence 1122233467899999999999999999999999887543 332222 5999999999999999999999864 3 467
Q ss_pred eeeehhccC--------------CCCCCCC------------------------------------CCCCCCC--CCcEE
Q 044184 150 RVEFAKKFK--------------KPRPQRS------------------------------------ASAPARE--TQHKL 177 (275)
Q Consensus 150 ~v~~a~~~~--------------~~~~~~~------------------------------------~~~~~~~--~~~~l 177 (275)
++.+++-.. .+.-+.+ ....... ....|
T Consensus 221 rId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vl 300 (492)
T KOG1190|consen 221 RIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVL 300 (492)
T ss_pred EeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEE
Confidence 777764210 0000000 0000011 14678
Q ss_pred EEecCCC-CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 178 YVSNLSW-KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 178 ~v~nl~~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
.|.||.. .+|.+-|..+|+-||.|.+++|+..+. ..|+|+|.+...|+.|+..|+|..+.|++|+|.+++...-
T Consensus 301 lvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 301 LVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred EEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 8888855 789999999999999999999997643 4599999999999999999999999999999999999988
Q ss_pred cccccccccc
Q 044184 257 VSESNKEEED 266 (275)
Q Consensus 257 ~~~~~~~~~~ 266 (275)
..+.++++++
T Consensus 376 qlp~egq~d~ 385 (492)
T KOG1190|consen 376 QLPREGQEDQ 385 (492)
T ss_pred cCCCCCCccc
Confidence 8888777774
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.2e-16 Score=107.39 Aligned_cols=70 Identities=31% Similarity=0.682 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceee
Q 044184 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150 (275)
Q Consensus 81 l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 150 (275)
|||+|||.++++++|+++|+.||.|..+.+..+.++..+|+|||+|.+.++|..|+..|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988889999999999999999999999999999999875
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.68 E-value=1.2e-15 Score=129.63 Aligned_cols=169 Identities=22% Similarity=0.310 Sum_probs=141.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
...|.|.||.. .+|.+.|..+|+.||+|.+|+|++.+ +-.|.|+|.+...|.-|+..|+|..+.|+.|+|.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 67889999974 58999999999999999999999876 24699999999999999999999999999999999886
Q ss_pred cCCCCCCCCC------------------------CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCC
Q 044184 157 FKKPRPQRSA------------------------SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE 212 (275)
Q Consensus 157 ~~~~~~~~~~------------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~ 212 (275)
..-..+..+. .....++..++++.|+|..+++++++..|...|+.++......
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~--- 449 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--- 449 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---
Confidence 5433222111 0112366779999999999999999999999899877665542
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEEEcccC
Q 044184 213 GRSAGYGFVSFATKEEAEAAISSLDGKELM-GRPLRLKFGQKN 254 (275)
Q Consensus 213 ~~~~g~afV~f~~~~~A~~a~~~l~g~~i~-g~~l~v~~a~~~ 254 (275)
+.+.+|++.+.+.++|..|+-.+|+..++ +..++|+|+++.
T Consensus 450 -kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 450 -KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred -CCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 34669999999999999999999999988 459999998763
No 47
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.8e-16 Score=139.98 Aligned_cols=80 Identities=25% Similarity=0.457 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..+|||+|||..+++++|+++|++||.|.+++|++|. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|...
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 4579999999999999999999999999999999999 999999999999999999999999999999999999999875
Q ss_pred c
Q 044184 157 F 157 (275)
Q Consensus 157 ~ 157 (275)
.
T Consensus 349 ~ 349 (352)
T TIGR01661 349 K 349 (352)
T ss_pred C
Confidence 4
No 48
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=128.60 Aligned_cols=158 Identities=27% Similarity=0.427 Sum_probs=123.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
.++|||+|||..+++++|+++|..||.|..+.+..++ ++.++|||||+|.+.++|..|+..++|..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999997 999999999999999999999999999999999999999653
Q ss_pred --cCCCCCC-----------CCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEe
Q 044184 157 --FKKPRPQ-----------RSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF 223 (275)
Q Consensus 157 --~~~~~~~-----------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f 223 (275)
....... .............+++.+++..+...++...|..++.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111111 112234456678899999999999999999999988776665554433333444444444
Q ss_pred CCHHHHHHHHHH
Q 044184 224 ATKEEAEAAISS 235 (275)
Q Consensus 224 ~~~~~A~~a~~~ 235 (275)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 444444444443
No 49
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.1e-15 Score=124.98 Aligned_cols=82 Identities=22% Similarity=0.456 Sum_probs=77.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
..+-+||||+-|+++++|..|+..|..||+|+.|.|++|+ +|+++|||||+|+++.+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3566999999999999999999999999999999999998 999999999999999999999999999999999999987
Q ss_pred hhc
Q 044184 154 AKK 156 (275)
Q Consensus 154 a~~ 156 (275)
-..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 653
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=1.3e-15 Score=132.76 Aligned_cols=86 Identities=20% Similarity=0.389 Sum_probs=81.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||.++++++|+++|+.||.|+.++|+.|..+++++|||||+|.++++|.+|++.|||..+.|++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCC
Q 044184 250 FGQKND 255 (275)
Q Consensus 250 ~a~~~~ 255 (275)
|+++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 51
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7.9e-16 Score=122.67 Aligned_cols=82 Identities=28% Similarity=0.462 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.+..+|-|.|||.++++++|+++|.+||.|..|.+.+|+ ||.++|||||.|.+.++|.+||..|+|.-+++-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 367899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=2e-15 Score=101.27 Aligned_cols=70 Identities=44% Similarity=0.694 Sum_probs=66.6
Q ss_pred EEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 177 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
|||+|||..+++++|+++|++||.+..+.+..+ .++..+|+|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999989988887 7888999999999999999999999999999999885
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=2.1e-15 Score=101.44 Aligned_cols=70 Identities=39% Similarity=0.701 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceee
Q 044184 81 LYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150 (275)
Q Consensus 81 l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 150 (275)
|||+|||+.+++++|+++|+.||.|..+.+..++++..+|+|||+|.+.++|..|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998889999999999999999999999988999999874
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.4e-14 Score=121.62 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=137.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
.-.+|||..+.++.+++||+..|+.||+|..|++-+++ .+.++||+||+|.+...-..|+..||-..++|+.|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 34789999999999999999999999999999999999 67899999999999999999999999999999999995432
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q 044184 156 KFKKPR-------------------------------------------------------------------------- 161 (275)
Q Consensus 156 ~~~~~~-------------------------------------------------------------------------- 161 (275)
......
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 110000
Q ss_pred -CCCCC----------------------------------------------------------------CCCCCCCCcE
Q 044184 162 -PQRSA----------------------------------------------------------------SAPARETQHK 176 (275)
Q Consensus 162 -~~~~~----------------------------------------------------------------~~~~~~~~~~ 176 (275)
+-++. ..-....++.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 00000 0012345678
Q ss_pred EEEecC--CCCCCH---hHHHHHHhhcCCceeEEEeeeCCCCCc----ccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 177 LYVSNL--SWKVRS---THLREFFSANFNPVSSKVVFESNEGRS----AGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 177 l~v~nl--~~~~~~---~~l~~~f~~~g~v~~~~i~~~~~~~~~----~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
+.++|+ |.++++ .+|.+-+++||.|..+.|...+.++.. .---||+|....++.+|.++|+|..++||++.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 888887 555554 589999999999998888766554421 23479999999999999999999999999998
Q ss_pred EEE
Q 044184 248 LKF 250 (275)
Q Consensus 248 v~~ 250 (275)
...
T Consensus 529 AE~ 531 (544)
T KOG0124|consen 529 AEV 531 (544)
T ss_pred hhh
Confidence 654
No 55
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.4e-15 Score=109.50 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=78.8
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
..-..+++|||+||++-++|++|.++|+.+|+|..|.|--|+ +..+-|||||+|.+.++|..|++.++|..++.++|.+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 344568999999999999999999999999999999998888 7788999999999999999999999999999999999
Q ss_pred eehhccC
Q 044184 152 EFAKKFK 158 (275)
Q Consensus 152 ~~a~~~~ 158 (275)
.|.....
T Consensus 111 D~D~GF~ 117 (153)
T KOG0121|consen 111 DWDAGFV 117 (153)
T ss_pred eccccch
Confidence 9876543
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.4e-14 Score=129.00 Aligned_cols=180 Identities=17% Similarity=0.246 Sum_probs=139.4
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
........+||++||...++.+++++...||++....+..+. +|.++||||.+|.+......|+..|||..+.+..+.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 344456889999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred eehhccCCCCCCCCC-----------C--CCCCCCCcEEEEecCCC--CC-CH-------hHHHHHHhhcCCceeEEEee
Q 044184 152 EFAKKFKKPRPQRSA-----------S--APARETQHKLYVSNLSW--KV-RS-------THLREFFSANFNPVSSKVVF 208 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~-----------~--~~~~~~~~~l~v~nl~~--~~-~~-------~~l~~~f~~~g~v~~~~i~~ 208 (275)
..+-........... . .....+...|.+.|+=. .+ .+ ++++.-+.+||.|..+.+..
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 887644322111111 0 11223344455554411 11 11 45666777889998888877
Q ss_pred eCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 209 ESNE---GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 209 ~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
+... .-..|..||+|++.+++++|+.+|+|..+.||.|.+.|-.
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 6222 3346789999999999999999999999999999999854
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=8e-15 Score=116.96 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=81.4
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.-....+|.|.||+.+.++++|.++|.+||.+..+.+.+|+.||.++|||||.|.+.++|.+||+.|||.-+..-.|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 044184 250 FGQKN 254 (275)
Q Consensus 250 ~a~~~ 254 (275)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99986
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=4.8e-15 Score=135.96 Aligned_cols=118 Identities=24% Similarity=0.259 Sum_probs=98.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC--CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPC--GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
..++|||+|||.++++++|+++|+.| |.|++|+++ ++||||+|.+.++|.+|+..||+..+.|+.|.|.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35789999999999999999999999 999999875 369999999999999999999999999999999999
Q ss_pred hccCCCCC-----------------CCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCc
Q 044184 155 KKFKKPRP-----------------QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNP 201 (275)
Q Consensus 155 ~~~~~~~~-----------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 201 (275)
.+...... .............+++++|+++..+++-+.++|..++.+
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~ 368 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPI 368 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccc
Confidence 86543210 001112334567899999999999999999999996654
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.6e-15 Score=117.86 Aligned_cols=82 Identities=24% Similarity=0.440 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
.-++||||||++.+..+.|+++|++||+|.+..|+.|+ +|++|||+||+|++.+.|.+|++. -.-.|+||+..++++-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 34789999999999999999999999999999999999 999999999999999999999985 4456899999999886
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
-..+
T Consensus 90 lg~~ 93 (247)
T KOG0149|consen 90 LGGK 93 (247)
T ss_pred hcCc
Confidence 5433
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=9e-15 Score=120.00 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..|+. |+|..+.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998763 57899999999999999996 9999999999999998765
Q ss_pred CC
Q 044184 158 KK 159 (275)
Q Consensus 158 ~~ 159 (275)
..
T Consensus 81 ~~ 82 (260)
T PLN03120 81 QL 82 (260)
T ss_pred CC
Confidence 43
No 61
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.4e-15 Score=112.76 Aligned_cols=79 Identities=29% Similarity=0.445 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..+.|||+||+..+++.+|...|..||+|.+|.|-.. +.|||||+|++..+|+.|+..|+|..|+|..|.|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3689999999999999999999999999999999774 578999999999999999999999999999999999876
Q ss_pred cCC
Q 044184 157 FKK 159 (275)
Q Consensus 157 ~~~ 159 (275)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 544
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.4e-15 Score=117.98 Aligned_cols=85 Identities=29% Similarity=0.497 Sum_probs=77.2
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||++|+|.+..+.|+++|++||.|++.+|+.|+.+|++||||||.|+|.++|.+|++. -+-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34467899999999999999999999999999999999999999999999999999999999984 44689999999999
Q ss_pred cccCCc
Q 044184 251 GQKNDD 256 (275)
Q Consensus 251 a~~~~~ 256 (275)
|-....
T Consensus 88 A~lg~~ 93 (247)
T KOG0149|consen 88 ASLGGK 93 (247)
T ss_pred hhhcCc
Confidence 877444
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=6.2e-15 Score=122.17 Aligned_cols=81 Identities=35% Similarity=0.593 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|+|.|||+...+-||+.+|.+||.|.+|.|+.+..| +||||||+|++.++|++|-.+|||..+.||+|.|..+.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34689999999999999999999999999999999998865 89999999999999999999999999999999999887
Q ss_pred cc
Q 044184 156 KF 157 (275)
Q Consensus 156 ~~ 157 (275)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 43
No 64
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=5.8e-16 Score=118.12 Aligned_cols=88 Identities=30% Similarity=0.592 Sum_probs=81.3
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
+.-.++.-|||||||+..||.+|..+|++||.|.+|.+++|+ ||+++||||+.|++..+..-|+..|||..|.||.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 445567899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eehhccCCC
Q 044184 152 EFAKKFKKP 160 (275)
Q Consensus 152 ~~a~~~~~~ 160 (275)
......+.+
T Consensus 110 DHv~~Yk~p 118 (219)
T KOG0126|consen 110 DHVSNYKKP 118 (219)
T ss_pred eecccccCC
Confidence 987655543
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=2.3e-14 Score=96.29 Aligned_cols=70 Identities=37% Similarity=0.629 Sum_probs=63.8
Q ss_pred EEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 177 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
|||+|||..+++++|+++|+.+|.|..+.+..++. +.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999998888899988866 89999999999999999999999999999999885
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.6e-14 Score=117.68 Aligned_cols=86 Identities=24% Similarity=0.471 Sum_probs=78.4
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|+|.|||+...+-||+..|++||.|.+|.|++.. ..+||||||.|++.+||.+|-++|||..+.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 45567899999999999999999999999999999999863 4579999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
.|...-..
T Consensus 170 ~ATarV~n 177 (376)
T KOG0125|consen 170 NATARVHN 177 (376)
T ss_pred ccchhhcc
Confidence 99887433
No 67
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.54 E-value=6.2e-14 Score=118.43 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=134.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccC----CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPC----GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.-.|.+++||+++++.++.++|..- |....|.++..++|+..|-|||.|..+++|..|+.+ |...++.|.|.+..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 4567889999999999999999753 345678888888999999999999999999999986 66667777777755
Q ss_pred hhccC--------C---C----CCCCC-----CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCcee---EEEeeeC
Q 044184 154 AKKFK--------K---P----RPQRS-----ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS---SKVVFES 210 (275)
Q Consensus 154 a~~~~--------~---~----~~~~~-----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~---~~i~~~~ 210 (275)
+.... . . ..... ...+......+|.+++||+..+.++|.++|+.|-.-+. +.++..
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 43210 0 0 00000 01123344789999999999999999999999765543 344444
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 211 NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 211 ~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
..|++.|-|||+|.+.++|..|....|+....+|.|.|--+.-
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 6788999999999999999999999998888899998876543
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=8.7e-14 Score=114.22 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.2
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
.++|||+|||+.+++++|+++|+.||.|..+.++.+. ..+|||||+|.+.++|..|+. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 357899999999999999996 999999999999999875
Q ss_pred CCc
Q 044184 254 NDD 256 (275)
Q Consensus 254 ~~~ 256 (275)
-..
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 443
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.2e-15 Score=116.31 Aligned_cols=86 Identities=17% Similarity=0.417 Sum_probs=79.6
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
..+.-|||+|||+.+||.||.-+|++||.++.+.+++|..||+++||||+.|++.-+...|+..|||..|.||.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCcc
Q 044184 252 QKNDDV 257 (275)
Q Consensus 252 ~~~~~~ 257 (275)
..-..+
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 654433
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.51 E-value=9.8e-14 Score=92.86 Aligned_cols=72 Identities=38% Similarity=0.644 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
+|||+|||..+++++|+++|..||.|..+.+..++ +.++|+|||+|.+.++|..|+..+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999887 7789999999999999999999999999999988763
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=3.6e-14 Score=110.49 Aligned_cols=87 Identities=29% Similarity=0.449 Sum_probs=81.2
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
+..+.-..|.|.||.+.++.++|+.+|++||.|.+|.|..|.-|+.++|||||.|.+..+|+.|+++|+|..+.|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 044184 249 KFGQKND 255 (275)
Q Consensus 249 ~~a~~~~ 255 (275)
++|+-..
T Consensus 88 q~arygr 94 (256)
T KOG4207|consen 88 QMARYGR 94 (256)
T ss_pred hhhhcCC
Confidence 9987543
No 72
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.7e-14 Score=113.30 Aligned_cols=85 Identities=34% Similarity=0.504 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||++|..++++.-|...|-+||.|.+|.++.|- +++++|||||+|.-.++|.+||..||+..+.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 346999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
.+.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 876543
No 73
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.1e-12 Score=115.06 Aligned_cols=159 Identities=16% Similarity=0.233 Sum_probs=119.8
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC----CCCCcc---eEEEEEcCHHHHHHHHHhcCccccc
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK----GGKNRN---FAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~----~~~~~g---~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
....-++.||||+||..++|++|...|..||.+. |.+.... --.++| |+|+.|+++..+...+..... .
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 3445679999999999999999999999999865 5555322 123567 999999999999887765433 2
Q ss_pred cceeeeeehhccCCCC--C----------CCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHh-hcCCceeEEEeeeCCC
Q 044184 146 GRIIRVEFAKKFKKPR--P----------QRSASAPARETQHKLYVSNLSWKVRSTHLREFFS-ANFNPVSSKVVFESNE 212 (275)
Q Consensus 146 g~~i~v~~a~~~~~~~--~----------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~ 212 (275)
...+.++...+.-+.. . .........++.+||||++||..++.++|..+|+ .||+|..+.|-.|++-
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 2222222211111100 0 0011345678899999999999999999999999 6888889999999888
Q ss_pred CCcccEEEEEeCCHHHHHHHHHH
Q 044184 213 GRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 213 ~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
+-++|-|-|.|.+..+-.+||.+
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 99999999999999999999983
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=3.8e-14 Score=110.37 Aligned_cols=85 Identities=28% Similarity=0.420 Sum_probs=79.3
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.......|-|-||.+.++.++|+.+|++||.|-+|.|..|. |+.++|||||.|.+..+|+.|+..|+|..++|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33456889999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ehhccC
Q 044184 153 FAKKFK 158 (275)
Q Consensus 153 ~a~~~~ 158 (275)
++....
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 987544
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=9.9e-14 Score=96.32 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=72.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
+.-.+.|||+|||+++|.+++.++|++||.|.+|+|--.+ ..+|-|||.|++..+|++|+..|+|..+.++.+.|-+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3446899999999999999999999999999999985444 56799999999999999999999999999999999887
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 653
No 76
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1e-13 Score=100.01 Aligned_cols=81 Identities=23% Similarity=0.438 Sum_probs=76.6
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
.+++|||+||++.++|++|.++|+++|.|..+.+-.|+.+..+-|||||+|-+.++|..|++.++|..+..+.|.|.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred c
Q 044184 253 K 253 (275)
Q Consensus 253 ~ 253 (275)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 77
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.2e-13 Score=110.09 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
..+|||+||++.+|+++|+++|+.||.|.+|+|++|. ..+|+|||+|++.++|+.|+. |+|..|.++.|.|..+...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 4799999999999999999999999999999999884 556899999999999999995 9999999999999877643
No 78
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=7.8e-14 Score=101.44 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...-.|||.++...+++++|.+.|..||+|+++.+--|. +|--+|||.|+|.+.+.|.+|+..+||..+.|++|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 345689999999999999999999999999999999998 9999999999999999999999999999999999999997
Q ss_pred hc
Q 044184 155 KK 156 (275)
Q Consensus 155 ~~ 156 (275)
=.
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 43
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=2.9e-12 Score=110.19 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
..++|+|+|||+++|.+.|++-|..||.|....|+ ..|+++| .|.|.++++|++|+..|+|..+.||.|+|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 35789999999999999999999999999988886 4477776 89999999999999999999999999999873
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=4.9e-13 Score=92.88 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
+..-.+.|||+|||+.++.++..++|++||.|.+++|-.. ...+|-|||.|++..+|.+|+..|+|..+.++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3445678999999999999999999999999999999755 4458899999999999999999999999999999999
Q ss_pred EcccCCc
Q 044184 250 FGQKNDD 256 (275)
Q Consensus 250 ~a~~~~~ 256 (275)
|..+...
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 9887644
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=1.8e-13 Score=119.17 Aligned_cols=78 Identities=26% Similarity=0.384 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCH--HHHHHHHHhcCccccccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP--EEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....+||||||++.+++++|+..|..||.|.+|.|++. +| +|||||+|.+. .++.+||..|+|..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34578999999999999999999999999999999944 56 89999999987 689999999999999999999998
Q ss_pred hhc
Q 044184 154 AKK 156 (275)
Q Consensus 154 a~~ 156 (275)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 864
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=3.7e-13 Score=89.66 Aligned_cols=70 Identities=34% Similarity=0.637 Sum_probs=65.7
Q ss_pred EcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 83 VFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 83 v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
|+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|..|+..+++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988 78999999999999999999999999999999988763
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=5.3e-13 Score=89.23 Aligned_cols=72 Identities=42% Similarity=0.661 Sum_probs=66.6
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
+|+|+|||..++.++|+++|.+||.+..+.+..+. +.++|+|||+|.+.++|.+|++.++|..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999998888765 7789999999999999999999999999999999873
No 84
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=7e-13 Score=89.13 Aligned_cols=74 Identities=36% Similarity=0.661 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999988667899999999999999999999999999999998864
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=7.2e-13 Score=108.71 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=80.5
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+-+||||.-|++.++|..|+..|+.||.|+.+.++.|.-+|+++|||||+|+++-+...|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcccC
Q 044184 250 FGQKN 254 (275)
Q Consensus 250 ~a~~~ 254 (275)
+-+..
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 86554
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=6.8e-13 Score=88.37 Aligned_cols=71 Identities=44% Similarity=0.687 Sum_probs=66.4
Q ss_pred EecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 179 VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 179 v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
|+|||..+++++|+++|++||.+..+.+..++.++.++|+|||+|.+.++|.+|++.++|..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999887788999999999999999999999999999999999873
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=5.8e-13 Score=116.04 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCccCCeeEEEE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATK--EEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
....+|||+||++.+++++|..+|..||.|..+.|+ +.+| ||||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345789999999999999999999999999999998 3466 99999999987 78999999999999999999999
Q ss_pred EcccC
Q 044184 250 FGQKN 254 (275)
Q Consensus 250 ~a~~~ 254 (275)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99886
No 88
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.42 E-value=3.8e-13 Score=119.19 Aligned_cols=80 Identities=26% Similarity=0.538 Sum_probs=77.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
+.|||||||+++++++|.++|+..|.|.+++++.|+ +|+++||||++|.+.++|..|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999 9999999999999999999999999999999999999998654
Q ss_pred C
Q 044184 158 K 158 (275)
Q Consensus 158 ~ 158 (275)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=7e-13 Score=118.21 Aligned_cols=182 Identities=22% Similarity=0.377 Sum_probs=147.0
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccC-----------Cc-eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPC-----------GT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT 141 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~-----------G~-i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 141 (275)
.....+.++|+++|+.++++.+..+|..- |+ +..+.+ +.-+++||++|.+.+.|..|+. +++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-----n~~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-----NLEKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-----cccccceeEEecCCCchhhhhc-ccc
Confidence 33456899999999999999999999763 33 566665 3455799999999999999997 789
Q ss_pred cccccceeeeeehhccCCC------------CCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeee
Q 044184 142 QEVSGRIIRVEFAKKFKKP------------RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE 209 (275)
Q Consensus 142 ~~~~g~~i~v~~a~~~~~~------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~ 209 (275)
..+.|+.+.+..-...... ................++|++||..+++++++++++.||......++.+
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 8899998887643322111 0111112234455778999999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCcccccc
Q 044184 210 SNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 261 (275)
Q Consensus 210 ~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~ 261 (275)
..+|.++||||.+|.+......|+..|||..++++.|.|+.|-.........
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~ 376 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVN 376 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhcccc
Confidence 9999999999999999999999999999999999999999998876554443
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.7e-13 Score=107.68 Aligned_cols=85 Identities=26% Similarity=0.467 Sum_probs=81.2
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||++|...+++.-|...|-+||.|+.+.+..|..+++++|||||+|.-.++|..||..||+.++.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 044184 251 GQKND 255 (275)
Q Consensus 251 a~~~~ 255 (275)
|++..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 99864
No 91
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=1.7e-11 Score=103.55 Aligned_cols=175 Identities=21% Similarity=0.246 Sum_probs=137.9
Q ss_pred cccCCCCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
.-..+...++|-+|.. .++.+.|.++|-.||.|+.|++++.+. |-|.|++.+..+.++|++.||+..+.|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3344578999999985 588999999999999999999998774 58999999999999999999999999999999
Q ss_pred eehhccCC--------------------------CCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCc--ee
Q 044184 152 EFAKKFKK--------------------------PRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNP--VS 203 (275)
Q Consensus 152 ~~a~~~~~--------------------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v--~~ 203 (275)
.+++..-- ..+..........++++|+..|.|..++|+.|..+|.. -++ ++
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ne-k~v~~~s 436 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNE-KDVPPTS 436 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhh-cCCCcce
Confidence 88764311 11111123455678899999999999999999999998 444 45
Q ss_pred EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC------eeEEEEEcccC
Q 044184 204 SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG------RPLRLKFGQKN 254 (275)
Q Consensus 204 ~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g------~~l~v~~a~~~ 254 (275)
+++..-+. ...--|+++|++.++|..||..+|...|.+ -.|+..|+.++
T Consensus 437 vkvFp~ks--erSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 437 VKVFPLKS--ERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred EEeecccc--cccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 55554432 223468999999999999999999998885 35666666654
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=8.6e-13 Score=96.04 Aligned_cols=89 Identities=19% Similarity=0.339 Sum_probs=82.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
++.......|||.++....++++|.+.|..||.|+.+.+-.|..+|-.+|||+|+|++...|+.|+..+||..+.|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCc
Q 044184 248 LKFGQKNDD 256 (275)
Q Consensus 248 v~~a~~~~~ 256 (275)
|.|+-.+..
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999877665
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=7.4e-13 Score=117.35 Aligned_cols=82 Identities=29% Similarity=0.601 Sum_probs=79.0
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~ 254 (275)
..|||+|+|+++++++|..+|+..|.|..++++.|+.+|+++||||++|.+.++|..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred Cc
Q 044184 255 DD 256 (275)
Q Consensus 255 ~~ 256 (275)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 94
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=2.7e-12 Score=108.71 Aligned_cols=80 Identities=40% Similarity=0.658 Sum_probs=77.1
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
..+|||+|||..+++++|+++|..||.+..+.+..+..++.++|+|||.|.+.++|..|+..++|..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999764
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.39 E-value=7e-13 Score=101.50 Aligned_cols=82 Identities=34% Similarity=0.495 Sum_probs=78.2
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
.....+|||+||+..++++.|.++|-+.|.|+.+.+..|.-++..+|||||+|.++++|+-|++.||...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 044184 251 GQ 252 (275)
Q Consensus 251 a~ 252 (275)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 88
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=3.6e-12 Score=103.15 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
...+|||+||++.+++++|+++|+.||.|..+.++.+ +..+++|||+|.++++|..|+. |+|..|.|+.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4579999999999999999999999999999999987 4556899999999999999996 99999999999999877
Q ss_pred cCCc
Q 044184 253 KNDD 256 (275)
Q Consensus 253 ~~~~ 256 (275)
.-..
T Consensus 80 ~y~~ 83 (243)
T PLN03121 80 QYED 83 (243)
T ss_pred cccc
Confidence 5443
No 97
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.5e-12 Score=99.09 Aligned_cols=80 Identities=29% Similarity=0.435 Sum_probs=71.3
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|||+||+..+++.||...|..||.+-.+.|-. .+.|||||+|+++-+|..|+..|+|..|+|..|.|.++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3468999999999999999999999988777777765 35789999999999999999999999999999999998
Q ss_pred ccCCc
Q 044184 252 QKNDD 256 (275)
Q Consensus 252 ~~~~~ 256 (275)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76543
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5.6e-12 Score=84.65 Aligned_cols=74 Identities=43% Similarity=0.703 Sum_probs=67.7
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
+|+|+|||..+++++|+++|+.+|.+..+.+..++.+ .++|+|||+|.+.++|..|++.++|..+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999988888876544 6789999999999999999999999999999999875
No 99
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=4.1e-12 Score=85.24 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=55.6
Q ss_pred HhHHHHHHh----hcCCceeEE-EeeeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 188 STHLREFFS----ANFNPVSSK-VVFESNE--GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 188 ~~~l~~~f~----~~g~v~~~~-i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
+++|+++|+ +||.+.++. ++.++.+ +.++|+|||.|.+.++|.+|++.|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999999985 6676666 8899999999999999999999999999999999863
No 100
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=5.6e-12 Score=80.73 Aligned_cols=56 Identities=41% Similarity=0.709 Sum_probs=50.7
Q ss_pred HHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 95 IKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 95 L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
|+++|++||.|.++.+..+. +++|||+|.+.++|..|++.|||..+.|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987654 589999999999999999999999999999999985
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=7e-12 Score=99.57 Aligned_cols=86 Identities=26% Similarity=0.501 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCCHhHHHH----HHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLRE----FFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~----~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
.+..+|||.||...+..++|+. +|++||.|++|... .+.+.+|.|||.|++.+.|-.|+.+|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999887 99999999998887 4678899999999999999999999999999999999
Q ss_pred EEEcccCCccccc
Q 044184 248 LKFGQKNDDVSES 260 (275)
Q Consensus 248 v~~a~~~~~~~~~ 260 (275)
|+||+.+.+...+
T Consensus 84 iqyA~s~sdii~~ 96 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQ 96 (221)
T ss_pred eecccCccchhhc
Confidence 9999999887665
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=8.6e-12 Score=79.85 Aligned_cols=56 Identities=34% Similarity=0.621 Sum_probs=50.2
Q ss_pred HHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 191 LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 191 l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
|+++|++||.|.++.+.... +++|||+|.+.++|.+|++.|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999888887542 689999999999999999999999999999999986
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.30 E-value=4.9e-11 Score=100.84 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=130.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhc--Cccccccceeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF--DTQEVSGRIIRVE 152 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~i~v~ 152 (275)
...+-.|.|++|-..++|.+|.+.++.||+|.-+..+. .+..|.|+|++.+-|++++..- +...+.|+.--+.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-----~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-----HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc-----ccceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 34467899999999999999999999999999888764 3458999999999999998632 2333678887777
Q ss_pred ehhccCCCCCCCCCCCCCCCCCcEE--EEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHH
Q 044184 153 FAKKFKKPRPQRSASAPARETQHKL--YVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230 (275)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~l--~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (275)
++..+...++. .....+...| .|-|--+.++.+.|..++.++|.|..+.|+.. +|. .|+|+|++.+.|+
T Consensus 103 yStsq~i~R~g----~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 103 YSTSQCIERPG----DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQ 173 (494)
T ss_pred cchhhhhccCC----CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHH
Confidence 77655444333 2222333333 34455668899999999999999998888864 444 5999999999999
Q ss_pred HHHHHhCCCccC--CeeEEEEEcccCC
Q 044184 231 AAISSLDGKELM--GRPLRLKFGQKND 255 (275)
Q Consensus 231 ~a~~~l~g~~i~--g~~l~v~~a~~~~ 255 (275)
+|..+|||-.|. -..|+|.||++..
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcce
Confidence 999999998876 4899999999865
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.30 E-value=1e-10 Score=102.35 Aligned_cols=171 Identities=25% Similarity=0.372 Sum_probs=130.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeE-EEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD-VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.....|-+++||+.||++||.++|+..-.|.. |.++.+..+++.|-|||+|.+.+.|+.|+.. |...|..|-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35678999999999999999999999876655 6677888899999999999999999999985 677788888888554
Q ss_pred hcc-------------------CCCCCCCC--------------------------------------------------
Q 044184 155 KKF-------------------KKPRPQRS-------------------------------------------------- 165 (275)
Q Consensus 155 ~~~-------------------~~~~~~~~-------------------------------------------------- 165 (275)
... ..+...+.
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 210 00000000
Q ss_pred -CC------------CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 044184 166 -AS------------APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 166 -~~------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (275)
.. .........++.++||+..++.+|..+|+. .....+.|-.. .+|+..|-|.|+|.+.++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp-l~p~~v~i~ig-~dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP-LNPYRVHIEIG-PDGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC-CCceeEEEEeC-CCCccCCcceeecccchhhHhh
Confidence 00 000112267999999999999999999998 66666666655 5688899999999999999999
Q ss_pred HHHhCCCccCCeeEEEEE
Q 044184 233 ISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 233 ~~~l~g~~i~g~~l~v~~ 250 (275)
+. -++..+..+-|....
T Consensus 338 ms-kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 338 MG-KDGANMGHRYVELFL 354 (510)
T ss_pred hc-cCCcccCcceeeecc
Confidence 97 466677777666544
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.2e-11 Score=83.00 Aligned_cols=60 Identities=20% Similarity=0.398 Sum_probs=54.1
Q ss_pred HHHHHHhhc----cCCceeEEE-EEeCC-C--CCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 92 VAEIKNLFA----PCGTVVDVE-IIKHK-G--GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 92 e~~L~~~F~----~~G~i~~v~-i~~~~-~--~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
+++|+++|+ .||.|.+|. +..++ + +.++|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 66665 5 899999999999999999999999999999999876
No 106
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.24 E-value=3.1e-11 Score=94.47 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=77.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEe-eeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVV-FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
.......++++.+|..+.+.++..+|.+++|++....+ +...||.++|||||+|++++.|.-|-+.||+..+.|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 45556789999999999999999999999777665554 99999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 044184 249 KFGQKN 254 (275)
Q Consensus 249 ~~a~~~ 254 (275)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998776
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.22 E-value=3.4e-11 Score=96.94 Aligned_cols=172 Identities=19% Similarity=0.297 Sum_probs=131.0
Q ss_pred CeEEEcCCCCCCCHHH-H--HHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 79 RKLYVFNLPWSFSVAE-I--KNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~-L--~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
-..+++++-..+..+- | ...|+.|-.+..-+++++.-+.-++++|+.|.....-.++-..-+++.+..+.++. +.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~ 174 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AA 174 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--cc
Confidence 4455665544444433 2 56788887777777888887788899999999888877777765666666555433 22
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
.... .......-.....+||.+.|..+++++-|-..|.+|-.....++++|..+|+++||+||.|.+..++.+|+..
T Consensus 175 gtsw---edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 175 GTSW---EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred cccc---CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 2111 1111222344567899999999999999999999988888899999999999999999999999999999999
Q ss_pred hCCCccCCeeEEEEEcccCC
Q 044184 236 LDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 236 l~g~~i~g~~l~v~~a~~~~ 255 (275)
|+|..++.+.|++..+.-++
T Consensus 252 m~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hcccccccchhHhhhhhHHh
Confidence 99999999999987765544
No 108
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.22 E-value=1.7e-11 Score=100.36 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=69.9
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~ 254 (275)
-+|||+|||...++.+|+.+|++||.|.++.|+ |.||||..++...|..||..|||..|.|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999999 459999999999999999999999999999999999988
Q ss_pred Cc
Q 044184 255 DD 256 (275)
Q Consensus 255 ~~ 256 (275)
.+
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 54
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.9e-12 Score=119.55 Aligned_cols=151 Identities=25% Similarity=0.298 Sum_probs=129.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++||+||+..+.+.+|...|..+|.+..+++.... +++.+|+||++|...+++.+|+....+..+ |
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h--------
Confidence 345689999999999999999999999998888777444 789999999999999999999985433333 3
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
...|+|.|.|+..|.++++.++..+|.+...+++.. ..|+++|.|+|.|.++.+|.++..
T Consensus 736 -------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 736 -------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVA 795 (881)
T ss_pred -------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcc
Confidence 235899999999999999999999999988876654 568999999999999999999999
Q ss_pred HhCCCccCCeeEEEEEcccCC
Q 044184 235 SLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 235 ~l~g~~i~g~~l~v~~a~~~~ 255 (275)
..++..+.-+.+.|..+.+..
T Consensus 796 s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 796 SVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred cchhhhhhhcCccccccCCcc
Confidence 888888888888888877743
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=5.4e-12 Score=99.34 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=119.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..+||||+|+...++|+-|.++|-.-|+|..|.|..++++..+ ||||.|+++..+.-|++.+||..+.++.+.+.+-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3689999999999999999999999999999999999988888 999999999999999999999999999988875432
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 044184 157 FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (275)
.... -|...++++.+...|+.-+.+..+++..+. +|+++.++|+.+--..+.-.++...
T Consensus 87 ~sha--------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 87 NSHA--------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred CCcc--------------------hhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhh
Confidence 1100 155678888888999987777777777663 4788999999988777777777766
Q ss_pred CCCccC
Q 044184 237 DGKELM 242 (275)
Q Consensus 237 ~g~~i~ 242 (275)
.+....
T Consensus 146 ~~l~~~ 151 (267)
T KOG4454|consen 146 QGLELF 151 (267)
T ss_pred cccCcC
Confidence 665543
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=9.8e-11 Score=91.68 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=76.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccC-CceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPC-GTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
.......+||+.+|..+.+.++..+|.+| |.|..+++-+++ ||.++|||||+|++.+.|.-|.+.||+..+.|+-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44456789999999999999999999998 778888887888 9999999999999999999999999999999999999
Q ss_pred eehhcc
Q 044184 152 EFAKKF 157 (275)
Q Consensus 152 ~~a~~~ 157 (275)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 877654
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=9.8e-11 Score=89.99 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|||+|||..+.+.+|.++|-+||.|.++.+-.. ....+||||+|+++-+|..||..-+|..+.|..|.|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 34678999999999999999999999999988877543 334679999999999999999999999999999999998
Q ss_pred ccC
Q 044184 252 QKN 254 (275)
Q Consensus 252 ~~~ 254 (275)
+.-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 765
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.14 E-value=5.9e-11 Score=100.66 Aligned_cols=178 Identities=19% Similarity=0.286 Sum_probs=143.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCc-cccccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDT-QEVSGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~i~v~~ 153 (275)
....++|++++..++.+.+...++..+|.+....+.... ...++|++++.|...+.+..|+.. .+ ....++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 357899999999999999888999999987777766655 778999999999999999999984 55 456666555544
Q ss_pred hhccCCCCCCCCCCCCCCCCCcEEE-EecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 044184 154 AKKFKKPRPQRSASAPARETQHKLY-VSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (275)
..... ................+++ +.+++..+++++|+.+|..++.+..+++..+..++..+|+|+|.|.....+..+
T Consensus 165 ~~~~~-~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 165 NTRRG-LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccc-ccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 44333 1111122222334445555 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCeeEEEEEcccCCc
Q 044184 233 ISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 233 ~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
+.. .+..+.|+.+.+.+..+..+
T Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 244 LND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hhc-ccCcccCcccccccCCCCcc
Confidence 997 88899999999999887654
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.1e-10 Score=94.70 Aligned_cols=86 Identities=22% Similarity=0.504 Sum_probs=79.9
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
.+..+.++|||-.||.+..+.+|.+.|-.||.|.+.++..|. |+.+|.|+||-|.+..+|..||..|||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 455678999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eehhccC
Q 044184 152 EFAKKFK 158 (275)
Q Consensus 152 ~~a~~~~ 158 (275)
..-+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 8776544
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.6e-10 Score=105.83 Aligned_cols=108 Identities=20% Similarity=0.379 Sum_probs=85.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
++|||||+|+.++++.+|.++|+.||.|.+|.++ .++|||||.+...++|.+|+.+|+...+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 6999999999999999999999999999999985 47899999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHh
Q 044184 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFS 196 (275)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 196 (275)
...... .... .-.+=|.-||+.--.++++.+++
T Consensus 496 G~kse~-k~~w-----D~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 496 GPKSEY-KDYW-----DVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred Ccchhh-hhhh-----hcccCeeEeehHhcCHHHHHhhh
Confidence 543311 0000 11122445677655555666655
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.7e-10 Score=96.94 Aligned_cols=83 Identities=22% Similarity=0.420 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.+...|||=-|.+-++.++|.-+|+.||.|.+|.|++|. +|.+-.||||+|.+.+++++|.-+|++..|+.+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 346899999999999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred hccC
Q 044184 155 KKFK 158 (275)
Q Consensus 155 ~~~~ 158 (275)
..-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 7543
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.7e-10 Score=94.98 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=83.4
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
...++.+.|||-.|..-+++++|.-+|+.||.++.+.+++|..+|.+-.||||+|.+.+++.+|.-.|++..|.+++|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCc
Q 044184 249 KFGQKNDD 256 (275)
Q Consensus 249 ~~a~~~~~ 256 (275)
.|+++..+
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99887655
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.1e-10 Score=108.61 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=137.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++||++||+..+++.+|+..|..+|.|..|.|..-.-+.-..|+||.|.+.+.+..|...+.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 44567999999999999999999999999999999987665555567999999999999999998998887655555544
Q ss_pred hhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 044184 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233 (275)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (275)
... .....+.+++++|+.+.....|...|..||.+..|.+ ..| .-|++|.|.+...|+.|+
T Consensus 448 G~~-------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy----~hg--q~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 448 GQP-------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY----RHG--QPYAYIQYESPPAAQAAT 508 (975)
T ss_pred ccc-------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec----ccC--CcceeeecccCccchhhH
Confidence 432 3455778999999999999999999999777665444 234 459999999999999999
Q ss_pred HHhCCCccCC--eeEEEEEcccCCccc
Q 044184 234 SSLDGKELMG--RPLRLKFGQKNDDVS 258 (275)
Q Consensus 234 ~~l~g~~i~g--~~l~v~~a~~~~~~~ 258 (275)
..|-|..|+| +.+.|.|+.......
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HHHhcCcCCCCCcccccccccCCCCCh
Confidence 9999999995 889999998875543
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=90.65 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCeeEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL-DGKELMGRPLR 247 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~i~g~~l~ 247 (275)
+......+|||++|...+++.+|+++|.+||++..++++.. +++|||+|.+.++|..|.... |...|.|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 44566789999999999999999999999999999998864 669999999999999998764 66679999999
Q ss_pred EEEcccC
Q 044184 248 LKFGQKN 254 (275)
Q Consensus 248 v~~a~~~ 254 (275)
|.|++++
T Consensus 297 i~Wg~~~ 303 (377)
T KOG0153|consen 297 IKWGRPK 303 (377)
T ss_pred EEeCCCc
Confidence 9999993
No 120
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.97 E-value=4.1e-09 Score=83.56 Aligned_cols=94 Identities=18% Similarity=0.274 Sum_probs=78.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEE-eeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---CeeE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKV-VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM---GRPL 246 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~---g~~l 246 (275)
....++|||.+||.++...+|+.+|..|.|-+...+ ..++.+...+.+||+.|.+..+|..|+++|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345789999999999999999999999888775544 334444556789999999999999999999999987 8999
Q ss_pred EEEEcccCCccccccccc
Q 044184 247 RLKFGQKNDDVSESNKEE 264 (275)
Q Consensus 247 ~v~~a~~~~~~~~~~~~~ 264 (275)
.|.+|+++.+.++.+.-.
T Consensus 111 hiElAKSNtK~kr~k~sg 128 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSG 128 (284)
T ss_pred EeeehhcCcccccCCCCC
Confidence 999999998776655443
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=89.58 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=70.9
Q ss_pred chhcccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhc-Cccccccce
Q 044184 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF-DTQEVSGRI 148 (275)
Q Consensus 70 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~ 148 (275)
....++....+|||++|-..+++.+|++.|-+||.|..|.+... +++|||+|.+.+.|+.|...+ +...|.|++
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34456677899999999999999999999999999999999764 469999999999999988654 444589999
Q ss_pred eeeeehhc
Q 044184 149 IRVEFAKK 156 (275)
Q Consensus 149 i~v~~a~~ 156 (275)
|.|.|..+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999987
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.93 E-value=4.6e-09 Score=89.36 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=120.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEE-EeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEI-IKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.+...+..++||+..++.+|-.+|+-.-...--.. ...-.|+..|.+.|.|.+.+.-.-|++. |...+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 34566788999999999999999986532222222 2222677889999999999988889874 777788888888655
Q ss_pred hccCCCCCCCCC-----CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhc----CCceeEEEeeeCCCCCcccEEEEEeCC
Q 044184 155 KKFKKPRPQRSA-----SAPARETQHKLYVSNLSWKVRSTHLREFFSAN----FNPVSSKVVFESNEGRSAGYGFVSFAT 225 (275)
Q Consensus 155 ~~~~~~~~~~~~-----~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~g~afV~f~~ 225 (275)
.......-.... ........-.|.+++||++.++.++.++|.+. ++.+.+.++. ..+|+..|-|||.|.+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFAC 215 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecC
Confidence 443221111111 11222334568889999999999999999743 3444444444 4678999999999999
Q ss_pred HHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 226 KEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 226 ~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
+++|+.|+.. |...|+.|.|.+-.+
T Consensus 216 ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 216 EEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 9999999983 555566665554433
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=3.2e-09 Score=97.53 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=75.1
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
...++||||++|+..+++.||.++|+.||.|.++.++. ++|+|||.+.+..+|.+|+.+|++..+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 34578999999999999999999999999999988873 589999999999999999999999999999999999
Q ss_pred cccCCccc
Q 044184 251 GQKNDDVS 258 (275)
Q Consensus 251 a~~~~~~~ 258 (275)
+..+.-+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99887553
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2e-09 Score=95.66 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=113.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++|+|-|||..+++++|+++|+.||+|..|+.-. ..+|.+||+|.|..+|+.|++.|++..+.|+.|....
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 345689999999999999999999999999999977644 3467999999999999999999999999999888221
Q ss_pred hhccCCCC-----------CCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEE
Q 044184 154 AKKFKKPR-----------PQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVS 222 (275)
Q Consensus 154 a~~~~~~~-----------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~ 222 (275)
.......- .+.....+..-....+++- |+...+..-+..++.-++.+.. .. ++.-+..-|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhh
Confidence 11000000 0000011112223344433 7777776555555555444433 22 23333466888
Q ss_pred eCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 223 FATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 223 f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
|.+..++..+...+ |..+.+....+.++.+
T Consensus 220 ~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 220 FADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hccccchhhcccCC-ceecCCCCceEEecCC
Confidence 88888886665544 7788888888888776
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.90 E-value=1.8e-08 Score=71.05 Aligned_cols=83 Identities=14% Similarity=0.267 Sum_probs=70.7
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeeEE
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM----GRPLR 247 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~----g~~l~ 247 (275)
.+||.|+|+|...+.++|.+++...+.- --+.+..|-.++.+.|||||.|.+++.|.+..+.++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999999874322 23456778889999999999999999999999999999876 68889
Q ss_pred EEEcccCCc
Q 044184 248 LKFGQKNDD 256 (275)
Q Consensus 248 v~~a~~~~~ 256 (275)
|.||+-...
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 999987654
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.87 E-value=2.2e-09 Score=91.53 Aligned_cols=88 Identities=32% Similarity=0.544 Sum_probs=80.4
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
..+++||++|++.++++.|+++|.+||.|.++.++.|+.+++++||+||.|++.+...+++. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999999988 56678999999999999
Q ss_pred cCCcccccc
Q 044184 253 KNDDVSESN 261 (275)
Q Consensus 253 ~~~~~~~~~ 261 (275)
+..+..+..
T Consensus 84 ~r~~~~~~~ 92 (311)
T KOG4205|consen 84 SREDQTKVG 92 (311)
T ss_pred Ccccccccc
Confidence 987665443
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.8e-08 Score=82.80 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
....+|+|.|||+.+++++|+++|..||.+..+-+.++++|.+.|.|-|.|...++|..|++.++|..++|+.+.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34578999999999999999999999999999999999999999999999999999999999999988999998887765
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
.
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.79 E-value=1.2e-08 Score=90.85 Aligned_cols=83 Identities=31% Similarity=0.531 Sum_probs=75.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||.+|+..+...+|+.+|++||.|...+|+.+- +--.+.|+||++.+.++|.+||..||...+.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3446899999999999999999999999999999999877 555678999999999999999999999999999999998
Q ss_pred hhcc
Q 044184 154 AKKF 157 (275)
Q Consensus 154 a~~~ 157 (275)
+++.
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8754
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.75 E-value=7.5e-08 Score=67.94 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=66.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccC--CceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccc----cceeee
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPC--GTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVS----GRIIRV 151 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~i~v 151 (275)
+||.|+|||...+.++|.+++... |...=+.++.|. ++.+.|||||.|.+.+.|....+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988764 445556677777 8889999999999999999999999998864 456777
Q ss_pred eehhcc
Q 044184 152 EFAKKF 157 (275)
Q Consensus 152 ~~a~~~ 157 (275)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777643
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.75 E-value=3.5e-08 Score=88.04 Aligned_cols=83 Identities=33% Similarity=0.455 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|+|.+|...+...+|+.+|++||.|+-.+++....+---++||||.+.+.++|.+||+.||-.++.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44678999999999999999999999999999999987777677999999999999999999999999999999999998
Q ss_pred ccC
Q 044184 252 QKN 254 (275)
Q Consensus 252 ~~~ 254 (275)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 764
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=9.8e-08 Score=78.42 Aligned_cols=86 Identities=29% Similarity=0.454 Sum_probs=75.1
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
.....+|+|.|||+.+.++||+++|..|+.+..+.+-++ ..|.+.|.|-|.|...++|.+|++.+||..+.|+.|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 334578999999999999999999999886666666666 6788999999999999999999999999999999999998
Q ss_pred cccCCcc
Q 044184 251 GQKNDDV 257 (275)
Q Consensus 251 a~~~~~~ 257 (275)
..+....
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 7776543
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.66 E-value=8.4e-08 Score=87.44 Aligned_cols=76 Identities=26% Similarity=0.411 Sum_probs=67.6
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
+.|.+.|+|+.++-+||.++|..|--.-...+++....|...|.|.|.|++.++|.+|...|+++.|..++|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 5899999999999999999999955555555666667899999999999999999999999999999999998864
No 133
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.66 E-value=4.8e-08 Score=80.38 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=78.6
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.......+||+|+++.++.+++..+|+.||++..+.+..|...|.++||+||+|.+.+.+..++. |+|..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 45567889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EcccC
Q 044184 250 FGQKN 254 (275)
Q Consensus 250 ~a~~~ 254 (275)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98765
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.65 E-value=5.1e-08 Score=86.36 Aligned_cols=78 Identities=29% Similarity=0.463 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..+|||+|||.++++.+|+++|..||+|+...|.... .+....||||+|.+.+.++.|+.+ +-..++++++.|+--+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4569999999999999999999999999988876655 445558999999999999999986 57778999999986543
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=4.9e-08 Score=80.31 Aligned_cols=84 Identities=27% Similarity=0.443 Sum_probs=77.6
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
....+...+||+|+.+.++.+++...|+.||.|..+.|..|. .|.++||+||+|.+.+.+..++. |+|..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 566678999999999999999999999999999999999999 77899999999999999999999 9999999999999
Q ss_pred eehhcc
Q 044184 152 EFAKKF 157 (275)
Q Consensus 152 ~~a~~~ 157 (275)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 877643
No 136
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.63 E-value=7.7e-08 Score=87.87 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC----CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK----GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.++|||+||++.++++.|...|+.||+|.+++|+.-. ..+.+.|+||.|-+..+|++|++.|+|+.+.+..+++-|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 5789999999999999999999999999999988533 345567999999999999999999999999999999999
Q ss_pred hhc
Q 044184 154 AKK 156 (275)
Q Consensus 154 a~~ 156 (275)
++.
T Consensus 254 gk~ 256 (877)
T KOG0151|consen 254 GKA 256 (877)
T ss_pred ccc
Confidence 853
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=4.9e-08 Score=78.93 Aligned_cols=81 Identities=16% Similarity=0.298 Sum_probs=74.7
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
....+.+||.+.|..+++++-|-..|.+|-.-...++++|+ +|+++||+||-|.+..++..|+..|+|..++.+.|..+
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 44567899999999999999999999999988888999999 99999999999999999999999999999999998876
Q ss_pred eh
Q 044184 153 FA 154 (275)
Q Consensus 153 ~a 154 (275)
-+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 54
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.60 E-value=7.4e-08 Score=87.76 Aligned_cols=177 Identities=10% Similarity=-0.004 Sum_probs=128.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
.+.+-+.+.+++....+++++|... .|-.+.+..+. .+...|-++|+|.....+.+|++. +....-.|.+.+-.+..
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 3455667899999999999998764 24444455555 444578999999999999999974 55555667777654321
Q ss_pred cCCC-------------------------CCCC-C--CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEee
Q 044184 157 FKKP-------------------------RPQR-S--ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVF 208 (275)
Q Consensus 157 ~~~~-------------------------~~~~-~--~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~ 208 (275)
.... +... . ..........+|||..||..+++..+.+.|.....|++...+.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 1100 0000 0 0113345578999999999999999999999988888855555
Q ss_pred eCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 209 ESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 209 ~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
...+++-++.|||.|.+++++..|..--+.+.++-+.|+|.-...+..
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 556778899999999999999999887777788888899876555443
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.58 E-value=3e-07 Score=77.52 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=72.2
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCce--------eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPV--------SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
....+.|||.|||.++|.+++.++|++||.|. .+++..+ ..|..+|-|+|.|--.++...|++.|++..++
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44456799999999999999999999977764 2455555 56999999999999999999999999999999
Q ss_pred CeeEEEEEcccC
Q 044184 243 GRPLRLKFGQKN 254 (275)
Q Consensus 243 g~~l~v~~a~~~ 254 (275)
|+.|+|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999998754
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.58 E-value=1.7e-07 Score=83.12 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
...+|||+|||.++++.+|+++|..||.|+...|......+...+||||+|.+.++++.|+++ +-..|+|++|.|.-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345599999999999999999999999999988887654555559999999999999999995 5788999999999877
Q ss_pred cCC
Q 044184 253 KND 255 (275)
Q Consensus 253 ~~~ 255 (275)
...
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 743
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.57 E-value=1.7e-08 Score=86.07 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=121.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCC----CCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG----GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
..|-|.||.++++.++++.+|+..|.|.++.++.... ......|||.|.+...+..|-. |.+.++-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4799999999999999999999999999999987542 2345689999999999988876 7777777777776543
Q ss_pred hccC-----------------CCCCCCCC------C------------CCC----------CCCCcEEEEecCCCCCCHh
Q 044184 155 KKFK-----------------KPRPQRSA------S------------APA----------RETQHKLYVSNLSWKVRST 189 (275)
Q Consensus 155 ~~~~-----------------~~~~~~~~------~------------~~~----------~~~~~~l~v~nl~~~~~~~ 189 (275)
.... ...+..+. . .+. ..-..+++|.+|+..|...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 2110 00000000 0 000 1123679999999999999
Q ss_pred HHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 190 ~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
++-+.|..+|+|....+- .|....+|.|.|....+...|+. ++|..+.-+...+..
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAI 222 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhh
Confidence 999999999988876664 24445678899999999999998 788877743333333
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=1.2e-08 Score=87.98 Aligned_cols=153 Identities=18% Similarity=0.281 Sum_probs=122.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCc--eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc-cccceeeeeehh
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGT--VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE-VSGRIIRVEFAK 155 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~i~v~~a~ 155 (275)
..+|++||.+..+..+|+.+|...-- -..+.+ ..||+||.+.+..-|.+|++.++|.. +.|.++.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999987521 111212 34799999999999999999999987 889999988776
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEe-eeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVV-FESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~-~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
+++ ..++.+-|+|+|.....+.|..+...||.+..+..+ .+..+ -..-|.|...+.++.||.
T Consensus 75 ~kk-------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~ 137 (584)
T KOG2193|consen 75 PKK-------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIH 137 (584)
T ss_pred hHH-------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHH
Confidence 432 224558899999999999999999999999876553 23222 223478899999999999
Q ss_pred HhCCCccCCeeEEEEEcccCC
Q 044184 235 SLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 235 ~l~g~~i~g~~l~v~~a~~~~ 255 (275)
.|+|..+....++|.|--..+
T Consensus 138 kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 138 KLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred hhcchHhhhhhhhcccCchhh
Confidence 999999999999999966544
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.48 E-value=1.1e-06 Score=59.28 Aligned_cols=75 Identities=28% Similarity=0.422 Sum_probs=48.4
Q ss_pred cEEEEecCCCCCCHhH----HHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 175 HKLYVSNLSWKVRSTH----LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~----l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..|+|.|||...+... |++++..+||-+--. . .+-|+|.|.+.+.|.+|.+.|+|....|++|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999887754 667777888865221 1 35699999999999999999999999999999999
Q ss_pred cccCCccc
Q 044184 251 GQKNDDVS 258 (275)
Q Consensus 251 a~~~~~~~ 258 (275)
...+.+..
T Consensus 74 ~~~~r~~~ 81 (90)
T PF11608_consen 74 SPKNREFN 81 (90)
T ss_dssp S--S----
T ss_pred cCCccccc
Confidence 86655543
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.8e-07 Score=82.27 Aligned_cols=74 Identities=26% Similarity=0.324 Sum_probs=66.0
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
...-...+|+|.|||..+++++|..+|+.||.|..++.. -..+|.+||+|-|.-+|++|+++|++.+|.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345667899999999999999999999999999885443 34578999999999999999999999999999988
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=6.8e-07 Score=81.86 Aligned_cols=86 Identities=28% Similarity=0.411 Sum_probs=76.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE---GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
..+..++|||+||+..++++.|...|+.||.+..++|+..... ...+.+|||.|-+..+|++|++.|+|..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3556788999999999999999999999999999999876542 4557899999999999999999999999999999
Q ss_pred EEEEcccCC
Q 044184 247 RLKFGQKND 255 (275)
Q Consensus 247 ~v~~a~~~~ 255 (275)
++-|++...
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999996543
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1.6e-07 Score=74.39 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
..+..++|||.|+...++++-|.++|-+-|.|+++.|..+ .+++.+ ||||.|.++-+..-|++.+||..+.++.+.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 3455789999999999999999999999666666666544 667777 99999999999999999999999999999999
Q ss_pred EcccC
Q 044184 250 FGQKN 254 (275)
Q Consensus 250 ~a~~~ 254 (275)
+-...
T Consensus 83 ~r~G~ 87 (267)
T KOG4454|consen 83 LRCGN 87 (267)
T ss_pred cccCC
Confidence 96655
No 147
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=5.7e-07 Score=72.40 Aligned_cols=72 Identities=28% Similarity=0.592 Sum_probs=65.7
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCC
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~ 255 (275)
.+||++||+.+.+.+|..+|..||.+-.+.+. .||+||+|.+..+|..|+..|||..+.|-.+.|.|++.+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 58999999999999999999998888877765 4688999999999999999999999999889999999653
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.14 E-value=8.8e-06 Score=54.94 Aligned_cols=70 Identities=34% Similarity=0.464 Sum_probs=48.0
Q ss_pred CeEEEcCCCCCCCHHHHHH----hhccCC-ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 79 RKLYVFNLPWSFSVAEIKN----LFAPCG-TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~----~F~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
..|||.|||.+.+...|+. ++..+| .|.+|. .+-|+|.|.+.+.|..|.+.|+|-.+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4699999999988776554 555676 466652 36899999999999999999999999999999999
Q ss_pred hhcc
Q 044184 154 AKKF 157 (275)
Q Consensus 154 a~~~ 157 (275)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=2e-07 Score=86.92 Aligned_cols=162 Identities=23% Similarity=0.150 Sum_probs=120.3
Q ss_pred CCeEEEcCCCCCCCHH-HHHHhhccCCceeEEEEEeCCCCCCcc-eEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 78 RRKLYVFNLPWSFSVA-EIKNLFAPCGTVVDVEIIKHKGGKNRN-FAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~-~L~~~F~~~G~i~~v~i~~~~~~~~~g-~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
.+...+.++-+..... ..+..|..+|.|+.|++.......+.+ ++++.+.....++.|.. ..+.-+.++...|-.++
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 3556777777766655 578899999999999987633222322 88999999999988887 57777888888887776
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
+..... .............++|+.||+....+.+|...|..++.+..+.+......+..+|+|++.|..+++|.+|+..
T Consensus 650 ~~~~~~-~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 650 AEEKEE-NFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred chhhhh-ccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 544211 1111111224457899999999999999999999988777666666667889999999999999999999875
Q ss_pred hCCCcc
Q 044184 236 LDGKEL 241 (275)
Q Consensus 236 l~g~~i 241 (275)
..+..+
T Consensus 729 ~d~~~~ 734 (881)
T KOG0128|consen 729 RDSCFF 734 (881)
T ss_pred hhhhhh
Confidence 544333
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.96 E-value=1.3e-05 Score=68.28 Aligned_cols=88 Identities=19% Similarity=0.299 Sum_probs=77.7
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCce--------eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPV--------SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
.....+|||-+||..+++++|.++|.+++.+. .+.+-.+..|+.+|+-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567899999999999999999999966553 3566778899999999999999999999999999999999
Q ss_pred CeeEEEEEcccCCccc
Q 044184 243 GRPLRLKFGQKNDDVS 258 (275)
Q Consensus 243 g~~l~v~~a~~~~~~~ 258 (275)
|..|+|.+|.......
T Consensus 143 gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVE 158 (351)
T ss_pred CCCchhhhhhhccCcc
Confidence 9999999999887533
No 151
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=1.3e-05 Score=71.83 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCC--CCHH----HHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc-cce
Q 044184 76 NIRRKLYVFNLPWS--FSVA----EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-GRI 148 (275)
Q Consensus 76 ~~~~~l~v~nLp~~--~te~----~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~ 148 (275)
.-...|+|.|+|.- ...+ -|..+|+++|++.++.++.+..|..+||.|++|.+..+|+.|++.|||..++ +++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 55688999999953 2222 3557899999999999998996679999999999999999999999999976 567
Q ss_pred eeeeehhc
Q 044184 149 IRVEFAKK 156 (275)
Q Consensus 149 i~v~~a~~ 156 (275)
+.|..-+.
T Consensus 136 f~v~~f~d 143 (698)
T KOG2314|consen 136 FFVRLFKD 143 (698)
T ss_pred EEeehhhh
Confidence 88866543
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.87 E-value=1.5e-05 Score=67.98 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeE--------EEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD--------VEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR 147 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 147 (275)
...+|||-+||..+++.+|.++|.++|.|.. |.|.+|+ |+..||-|-|.|.+...|+.|+..+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4578999999999999999999999997643 6777888 999999999999999999999999999999999
Q ss_pred eeeeeehhcc
Q 044184 148 IIRVEFAKKF 157 (275)
Q Consensus 148 ~i~v~~a~~~ 157 (275)
+|.|..+...
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999887644
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.85 E-value=3.6e-05 Score=65.00 Aligned_cols=78 Identities=18% Similarity=0.436 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCCHHHH------HHhhccCCceeEEEEEeCC--CCCCcceE--EEEEcCHHHHHHHHHhcCccccccc
Q 044184 78 RRKLYVFNLPWSFSVAEI------KNLFAPCGTVVDVEIIKHK--GGKNRNFA--FVTMASPEEAQAAVNQFDTQEVSGR 147 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L------~~~F~~~G~i~~v~i~~~~--~~~~~g~a--fV~f~~~~~A~~a~~~l~~~~~~g~ 147 (275)
..-+||-+||+.+..+++ .++|++||.|..|.|-+.- .+...+++ ||+|.+.++|..||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999998776662 4799999999998775443 22223334 9999999999999999999999999
Q ss_pred eeeeeehh
Q 044184 148 IIRVEFAK 155 (275)
Q Consensus 148 ~i~v~~a~ 155 (275)
.|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99987754
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.81 E-value=5.5e-05 Score=54.57 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=43.7
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC-----CCccCCeeEEEE
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD-----GKELMGRPLRLK 249 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-----g~~i~g~~l~v~ 249 (275)
..|+|.+++..++.++|++.|++|+.|..|.+... -..|+|.|.+.++|+.|+..+. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46899999999999999999999887777666543 2368999999999999998763 345677777666
Q ss_pred Eccc
Q 044184 250 FGQK 253 (275)
Q Consensus 250 ~a~~ 253 (275)
.-..
T Consensus 76 vLeG 79 (105)
T PF08777_consen 76 VLEG 79 (105)
T ss_dssp ---H
T ss_pred ECCC
Confidence 5443
No 155
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.80 E-value=1.8e-05 Score=67.49 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=72.0
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 77 IRRKLY-VFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 77 ~~~~l~-v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++| |++++..+++++|+..|..+|.|..+++..++ ++..+|+|||.|.+...+..++.. +...+.++++.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 99999999999999999999999999999988 999999999999999999999986 777899999999887
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
.+.
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 654
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.74 E-value=8.9e-05 Score=62.72 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=64.3
Q ss_pred CCCcEEEEecCCCCCCHhHH------HHHHhhcCCceeEEEeeeCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 172 ETQHKLYVSNLSWKVRSTHL------REFFSANFNPVSSKVVFESNEG---RSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l------~~~f~~~g~v~~~~i~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
...+-+||-+|+..+..+++ .++|++||.+.++.+-+..... .+.--.||.|.+.++|.+||...+|..+.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 33456899999998876652 3899999999888775543211 11112389999999999999999999999
Q ss_pred CeeEEEEEcccC
Q 044184 243 GRPLRLKFGQKN 254 (275)
Q Consensus 243 g~~l~v~~a~~~ 254 (275)
||.|++.|...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999998754
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.67 E-value=0.00013 Score=52.58 Aligned_cols=59 Identities=25% Similarity=0.316 Sum_probs=38.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 142 (275)
..|.|.+++..++-++|++.|+.||.|.-|.+.+.. .-|||.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999888876533 37999999999999999876554
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00011 Score=66.18 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=66.0
Q ss_pred CCCcEEEEecCCCCC------CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-Ce
Q 044184 172 ETQHKLYVSNLSWKV------RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-GR 244 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~-g~ 244 (275)
....+|+|.|+|.-- -..-|..+|+++|.++...+..+..+| .+||.|++|++..+|+.|++.|||+.+. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 345688999998632 223577899999999999999887666 8999999999999999999999999987 67
Q ss_pred eEEEEEccc
Q 044184 245 PLRLKFGQK 253 (275)
Q Consensus 245 ~l~v~~a~~ 253 (275)
...|..-+.
T Consensus 135 tf~v~~f~d 143 (698)
T KOG2314|consen 135 TFFVRLFKD 143 (698)
T ss_pred eEEeehhhh
Confidence 777765444
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00016 Score=58.97 Aligned_cols=88 Identities=27% Similarity=0.313 Sum_probs=76.4
Q ss_pred HHHHHHHhcCccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeC
Q 044184 131 EAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES 210 (275)
Q Consensus 131 ~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~ 210 (275)
-|..|...|++....|+.++|.|+.. ..|+|.||...++.+.+.+-|..||.+...++..|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD- 66 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD- 66 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-
Confidence 46667777899999999999999973 46999999999999999999999888877777766
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhC
Q 044184 211 NEGRSAGYGFVSFATKEEAEAAISSLD 237 (275)
Q Consensus 211 ~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (275)
..++..+-++|.|...-.|.+|+..+.
T Consensus 67 ~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 67 DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ccccccccchhhhhcchhHHHHHHHhc
Confidence 457788899999999999999998773
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.53 E-value=6.7e-05 Score=63.70 Aligned_cols=75 Identities=19% Similarity=0.386 Sum_probs=66.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCc--eeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGT--VVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.-++|||||-+.+|+++|.+.+...|- +.++++..+. +|++||||.|...+....++.++-|-.+.+.|+.-.|-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 468999999999999999999998884 7888888888 99999999999999999999999888888888765553
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.52 E-value=0.0001 Score=64.27 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeee---CCC--CC--------cccEEEEEeCCHHHHHHHH
Q 044184 167 SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE---SNE--GR--------SAGYGFVSFATKEEAEAAI 233 (275)
Q Consensus 167 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~---~~~--~~--------~~g~afV~f~~~~~A~~a~ 233 (275)
......+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +.+ +. .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3344568899999999999999999999999999999999865 222 11 1557999999999999999
Q ss_pred HHhCCCc
Q 044184 234 SSLDGKE 240 (275)
Q Consensus 234 ~~l~g~~ 240 (275)
+.|+...
T Consensus 304 e~~~~e~ 310 (484)
T KOG1855|consen 304 ELLNPEQ 310 (484)
T ss_pred Hhhchhh
Confidence 9886544
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.48 E-value=0.00053 Score=48.81 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEE-EEeC-------CCCCCcceEEEEEcCHHHHHHHHHhcCccccccc-
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVE-IIKH-------KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR- 147 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~-------~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~- 147 (275)
..+.|.|-+.|+. ....|.+.|+.||.|.+.. +.++ +.-....+..|+|.+..+|.+|+.. ||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3567899999987 5677888999999987764 1111 1012345999999999999999985 99999875
Q ss_pred eeeeeehhc
Q 044184 148 IIRVEFAKK 156 (275)
Q Consensus 148 ~i~v~~a~~ 156 (275)
.+-|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 455777653
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.47 E-value=0.00033 Score=43.78 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHH
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV 136 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~ 136 (275)
+.|-|.|.++...+ .++..|..||.|..+.+. ....+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 56888898876664 556699999999998875 23458999999999999885
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.44 E-value=7.5e-05 Score=60.89 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=61.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-C--------CCCc----ceEEEEEcCHHHHHHHHHhcCccc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-G--------GKNR----NFAFVTMASPEEAQAAVNQFDTQE 143 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~--------~~~~----g~afV~f~~~~~A~~a~~~l~~~~ 143 (275)
....||+++||+.++..-|+++|+.||.|=.|.+-... . |.++ .-|+|+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999999886554 3 2222 357899999999999999999999
Q ss_pred cccce
Q 044184 144 VSGRI 148 (275)
Q Consensus 144 ~~g~~ 148 (275)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98865
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.38 E-value=0.0013 Score=49.65 Aligned_cols=77 Identities=25% Similarity=0.242 Sum_probs=52.1
Q ss_pred CCCCCcEEEEecCC------CCCCH---hHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 044184 170 ARETQHKLYVSNLS------WKVRS---THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240 (275)
Q Consensus 170 ~~~~~~~l~v~nl~------~~~~~---~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 240 (275)
..++..+|.|.-+. ....+ .+|.+.|..||.++-++++- +.-+|.|.+-.+|.+|+. ++|.+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcE
Confidence 45556677776665 12332 36777888888888777662 247899999999999999 99999
Q ss_pred cCCeeEEEEEcccCC
Q 044184 241 LMGRPLRLKFGQKND 255 (275)
Q Consensus 241 i~g~~l~v~~a~~~~ 255 (275)
++|+.|+|+...+.=
T Consensus 94 v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 94 VNGRTLKIRLKTPDW 108 (146)
T ss_dssp ETTEEEEEEE-----
T ss_pred ECCEEEEEEeCCccH
Confidence 999999999987764
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.37 E-value=0.00097 Score=47.46 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=53.3
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeC-------CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe-
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES-------NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR- 244 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~-------~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~- 244 (275)
...-|.|.+.|.. ....|.+.|++||.|++..-+... .......+..|+|.++.+|++||. -||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3566899999987 556688899999998876511110 011235588999999999999999 799999985
Q ss_pred eEEEEEccc
Q 044184 245 PLRLKFGQK 253 (275)
Q Consensus 245 ~l~v~~a~~ 253 (275)
.+-|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 555887744
No 167
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.33 E-value=0.00034 Score=63.46 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=68.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---Ce
Q 044184 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM---GR 244 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~---g~ 244 (275)
.......+.|||.||-..+|.-+|+.+++.-|+.+.-.+| | +-+..|||.|.+.++|.....+|||..+- ++
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3467788999999999999999999999965666543344 2 23556999999999999999999999865 79
Q ss_pred eEEEEEcccCCc
Q 044184 245 PLRLKFGQKNDD 256 (275)
Q Consensus 245 ~l~v~~a~~~~~ 256 (275)
.|.+.|+...+-
T Consensus 513 ~L~adf~~~del 524 (718)
T KOG2416|consen 513 HLIADFVRADEL 524 (718)
T ss_pred eeEeeecchhHH
Confidence 999999876543
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.25 E-value=0.00034 Score=61.12 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=58.2
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeC---C-C--CC--------CcceEEEEEcCHHHHHHHHHh
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH---K-G--GK--------NRNFAFVTMASPEEAQAAVNQ 138 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~-~--~~--------~~g~afV~f~~~~~A~~a~~~ 138 (275)
..+-.+++|.+-|||.+-.-+.|.++|+.+|.|..|+|..- + + +. .+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999989999999999999999999865 2 1 22 246899999999999999997
Q ss_pred cCcc
Q 044184 139 FDTQ 142 (275)
Q Consensus 139 l~~~ 142 (275)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 6443
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.24 E-value=0.00035 Score=59.43 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=64.7
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCc---eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNP---VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v---~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
.....++||+||-|+++++||.+.+.. -|+ .++++.....+|.+||||+|-..+..+.++.++.|-.+.|.|+.-.
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 344678999999999999999888877 444 4567777778899999999999999999999999999999986544
Q ss_pred E
Q 044184 248 L 248 (275)
Q Consensus 248 v 248 (275)
|
T Consensus 156 V 156 (498)
T KOG4849|consen 156 V 156 (498)
T ss_pred e
Confidence 4
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.18 E-value=0.0012 Score=54.93 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=54.1
Q ss_pred HhHHHHHHhhcCCceeEEEeeeCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 188 STHLREFFSANFNPVSSKVVFESNEGRS-AGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 188 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~-~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
++++++-+++||.|..+.|...+.--.. .--.||+|...++|.+|+-.|||..|+||.+...|-..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4678999999999999888776543221 12379999999999999999999999999999998654
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.17 E-value=0.00029 Score=57.50 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=60.0
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCC--------CCcc----cEEEEEeCCHHHHHHHHHHhCCCc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE--------GRSA----GYGFVSFATKEEAEAAISSLDGKE 240 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~--------~~~~----g~afV~f~~~~~A~~a~~~l~g~~ 240 (275)
....||+++||......-|+++|..||.|-.+.+...... |.++ .-|.|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999888877777654322 2222 337799999999999999999999
Q ss_pred cCCee
Q 044184 241 LMGRP 245 (275)
Q Consensus 241 i~g~~ 245 (275)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 172
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0014 Score=58.67 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=59.2
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhc-cCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHH
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFA-PCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~ 137 (275)
+.-++.+|||||+||.-++.++|..+|. -||.|.-+-|-.|+ -+-++|-|=|+|.+..+-.+||.
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 3445689999999999999999999999 59999999999995 78899999999999999999996
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.07 E-value=0.0038 Score=42.33 Aligned_cols=55 Identities=24% Similarity=0.474 Sum_probs=42.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcC
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 140 (275)
.+..+|+ .|..|...||.++|+.||.|. |.++.|. -|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 3566676 999999999999999999986 6666554 79999999999999998765
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.03 E-value=0.0022 Score=40.08 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=40.8
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (275)
+.|-|.|.+....+. +..+|..||.|+.+.+. ......+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 467888888766544 66688899999987775 23558999999999999985
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.93 E-value=0.00033 Score=57.32 Aligned_cols=64 Identities=19% Similarity=0.341 Sum_probs=52.9
Q ss_pred HHHHHhhc-cCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 93 AEIKNLFA-PCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 93 ~~L~~~F~-~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
++|...|. +||.|++++|-.+..-.-.|-+||.|..+++|++|+..||+..+.|++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 89999999776555445578999999999999999999999999999999988753
No 176
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.87 E-value=0.00071 Score=61.48 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=62.7
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhcc-CCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccc---cccee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV---SGRII 149 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~i 149 (275)
....++.|+|.||-.-.|.-+|+.+++. .|.|+...|- +-+.+|||.|.+.++|.+...+|||..+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 4456789999999999999999999995 5567776432 2356899999999999999999999875 56778
Q ss_pred eeeehh
Q 044184 150 RVEFAK 155 (275)
Q Consensus 150 ~v~~a~ 155 (275)
.+.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 888764
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.82 E-value=0.0012 Score=57.78 Aligned_cols=79 Identities=32% Similarity=0.495 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCeeEEEEEccc
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK-ELMGRPLRLKFGQK 253 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~-~i~g~~l~v~~a~~ 253 (275)
..+|++||...++..+|..+|...--...-.++.. .||+||.+-+...|.+|++.++|+ ++.|+++.|.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 36899999999999999999997321222233332 689999999999999999999996 58899999999988
Q ss_pred CCcccc
Q 044184 254 NDDVSE 259 (275)
Q Consensus 254 ~~~~~~ 259 (275)
+..+..
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 776543
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.79 E-value=0.0036 Score=52.26 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=53.1
Q ss_pred HHHHHHhhccCCceeEEEEEeCCCC--CCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 92 VAEIKNLFAPCGTVVDVEIIKHKGG--KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 92 e~~L~~~F~~~G~i~~v~i~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
++++.+.+.+||.|.+|.|..+++. ...--.||+|...++|.+|+-.|||+.++||.+...|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567788999999999999887721 122357999999999999999999999999999887765
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.68 E-value=0.0043 Score=59.15 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=80.7
Q ss_pred ccccCCcchhhhhccccccccccCCcchh----cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCc
Q 044184 44 SYNFPTRNLCLQVCSTLQDTTVETKPEQT----QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR 119 (275)
Q Consensus 44 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~ 119 (275)
...|.....+.+++..+....+....... .+....+.+|+++|+.++....|...|..||.|..|.+-. ..
T Consensus 417 f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq 491 (975)
T KOG0112|consen 417 FVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQ 491 (975)
T ss_pred hhhhhccccCcccchhhcCCccccCcccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CC
Confidence 34444555555555555554443322222 1556678999999999999999999999999999877632 23
Q ss_pred ceEEEEEcCHHHHHHHHHhcCcccccc--ceeeeeehhcc
Q 044184 120 NFAFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFAKKF 157 (275)
Q Consensus 120 g~afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~a~~~ 157 (275)
.||||.|.+...+..|++.|.|..++| +.+.|.++...
T Consensus 492 ~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 492 PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 499999999999999999999999874 56888887643
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.59 E-value=0.013 Score=37.61 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=45.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccC---CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPC---GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l 139 (275)
..|+|+|+. +++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 579999994 58999999999999 135678998876 5899999999999999754
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.59 E-value=0.0014 Score=53.81 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=49.0
Q ss_pred hHHHHHHh-hcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 189 THLREFFS-ANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 189 ~~l~~~f~-~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
+++...|+ +||.++++.+... -.-.-+|-++|.|...++|++|++.|||..+.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 7778877755533 233457899999999999999999999999999999998853
No 182
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.57 E-value=0.0039 Score=51.13 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=64.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc----cccceeeeee
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE----VSGRIIRVEF 153 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~----~~g~~i~v~~ 153 (275)
+..|||.||+.-++.+.+.+.|+.||+|..-.++.|..++..+-++|+|...-.|.+|++.+...- ..+++..|..
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 378999999999999999999999999998888888889999999999999999999998763322 3456666654
Q ss_pred h
Q 044184 154 A 154 (275)
Q Consensus 154 a 154 (275)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.53 E-value=0.0081 Score=45.45 Aligned_cols=55 Identities=29% Similarity=0.457 Sum_probs=45.1
Q ss_pred HHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 94 EIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 94 ~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
+|.+.|..||.+.=|++..+ .-+|+|.+.+.|.+|+. ++|..+.|+.|.|+.-.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 67889999999887777643 58999999999999998 799999999999986554
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.39 E-value=0.0068 Score=48.04 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc-CCce---eEEEEEeCC--C-CCCcceEEEEEcCHHHHHHHHHhcCcccccc---
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAP-CGTV---VDVEIIKHK--G-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSG--- 146 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~--~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--- 146 (275)
....|.|++||+++|++++++.++. ++.- ..+.-.... . .....-|||.|.+.+++......++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999998887 6665 333322222 1 1234689999999999999999999977532
Q ss_pred --ceeeeeehhccC
Q 044184 147 --RIIRVEFAKKFK 158 (275)
Q Consensus 147 --~~i~v~~a~~~~ 158 (275)
....|++|..++
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 245667766533
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.28 E-value=0.034 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=44.5
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcC---CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANF---NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g---~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (275)
...|+|+|++ .++.++|+.+|..|+ +...+.++-|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999997 488999999999973 45677777541 2779999999999999865
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.00 E-value=0.034 Score=41.71 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=57.8
Q ss_pred ccCCCCeEEEcCCCCCCC----HHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccccccee
Q 044184 74 KQNIRRKLYVFNLPWSFS----VAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII 149 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~t----e~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 149 (275)
.+.+..+|.|+=|..++. ...+...++.||+|.+|...- +.-|.|.|.+..+|-+|+.+++. ...|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 345567898987766653 344666788899999998753 33799999999999999998766 5667788
Q ss_pred eeeehhc
Q 044184 150 RVEFAKK 156 (275)
Q Consensus 150 ~v~~a~~ 156 (275)
.+.|-..
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8887654
No 187
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.88 E-value=0.015 Score=50.61 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=59.4
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN---EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
...|.|.||...++.++++.+|+-.|.|.++.++.... -......|||.|.|...+..|.- |.+..+=|+.|.|--
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34899999999999999999999999998888875221 23456789999999999888877 666665566555544
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.72 E-value=0.13 Score=37.24 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCC-ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCG-TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
...+.+...|..++-++|..+.+.+- .|..++|++|... ++=-+.+.|.+.++|......+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34455555566666677776666654 4788999988742 4557889999999999999999998864
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.51 E-value=0.28 Score=35.61 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=48.1
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCce-eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPV-SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
...+.+...|+..+-++|..+...+-..+ .+++++|. ..++-.++++|.+.++|..-...+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34455555555666677777766655554 55666652 235777899999999999999999999866
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.48 E-value=0.0058 Score=52.18 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=63.0
Q ss_pred CcEEEEecCCCCCCHhHHH---HHHhhcCCceeEEEeeeCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 174 QHKLYVSNLSWKVRSTHLR---EFFSANFNPVSSKVVFESN---EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
..-+||-+|+..+..+.+. +.|.+||++..+.+-.+.. ......-++|.|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3457788888777554443 6788888888888877652 111122388999999999999999999999999999
Q ss_pred EEEcccCC
Q 044184 248 LKFGQKND 255 (275)
Q Consensus 248 v~~a~~~~ 255 (275)
+.+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 99988774
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.07 E-value=0.013 Score=50.00 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=59.9
Q ss_pred CeEEEcCCCCCCCHHHHH---HhhccCCceeEEEEEeCCC--CC--CcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 79 RKLYVFNLPWSFSVAEIK---NLFAPCGTVVDVEIIKHKG--GK--NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~--~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
+-+||-+|+.....+.+. +.|.+||.|..|.+.++.. .. ..--+||+|...++|..||...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888999877666554 4889999999998877551 11 1124899999999999999999999999999776
Q ss_pred eehh
Q 044184 152 EFAK 155 (275)
Q Consensus 152 ~~a~ 155 (275)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6554
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.80 E-value=0.2 Score=34.10 Aligned_cols=56 Identities=11% Similarity=0.263 Sum_probs=39.9
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 238 (275)
..||--..|..|...||.++|++|| -+.+..+-| .-|||...+.+.|..|+..+..
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG-~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFG-QIYVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCC-CEEEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCC-cEEEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3444444999999999999999955 456666633 2599999999999999998763
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.71 E-value=0.12 Score=41.13 Aligned_cols=62 Identities=31% Similarity=0.349 Sum_probs=45.9
Q ss_pred CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeEEEEEcccC
Q 044184 187 RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD--GKELMGRPLRLKFGQKN 254 (275)
Q Consensus 187 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~i~g~~l~v~~a~~~ 254 (275)
..+.|+++|..++.++....+.. -+-..|.|.+.++|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999988888887742 3347899999999999999999 99999999999999543
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.61 E-value=0.23 Score=44.25 Aligned_cols=67 Identities=13% Similarity=0.309 Sum_probs=58.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCc-eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
++.|+|-.+|.-++-.||..+...+-. |.+|++++|... ++=.+.|.|.+..+|......+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 789999999999999999999988754 899999997732 2336899999999999999999998864
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.55 E-value=0.1 Score=47.65 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=56.7
Q ss_pred chhcccCCCCeEEEcCCCCCCCHHHHHHhhcc--CCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc--cc
Q 044184 70 EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAP--CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE--VS 145 (275)
Q Consensus 70 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~ 145 (275)
.........+.|+|+-||..+-.++++.+|+. +-.+.+|.+-.+. + =||+|++..+|+.|.+.|...+ +.
T Consensus 167 ekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----n-WyITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 167 EKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----N-WYITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred cccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----c-eEEEeecchhHHHHHHHHHHHHHhhc
Confidence 33344555678899999999999999999986 5678888875433 3 4999999999999998775433 55
Q ss_pred cceee
Q 044184 146 GRIIR 150 (275)
Q Consensus 146 g~~i~ 150 (275)
|+.|.
T Consensus 241 gKpIm 245 (684)
T KOG2591|consen 241 GKPIM 245 (684)
T ss_pred Ccchh
Confidence 55443
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.48 E-value=0.14 Score=46.82 Aligned_cols=75 Identities=12% Similarity=0.265 Sum_probs=56.1
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhh--cCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCeeE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSA--NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG--KELMGRPL 246 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~--~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~i~g~~l 246 (275)
....+.|.|+.||...-.++++.+|+. +-.++++.+-.. .+ =||.|++..||+.|.+.|.. +.|.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------Cc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 344678899999999999999999986 334455555432 22 38999999999999988853 45778877
Q ss_pred EEEEcc
Q 044184 247 RLKFGQ 252 (275)
Q Consensus 247 ~v~~a~ 252 (275)
...+..
T Consensus 245 mARIKa 250 (684)
T KOG2591|consen 245 MARIKA 250 (684)
T ss_pred hhhhhh
Confidence 766544
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.38 E-value=0.13 Score=41.02 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=46.2
Q ss_pred CCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcC--ccccccceeeeeehhcc
Q 044184 90 FSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD--TQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 90 ~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i~v~~a~~~ 157 (275)
-....|+++|..|+.+..+..++. -+-..|.|.+.+.|..|...|+ +..+.|..+++-++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 456789999999999988887753 3578999999999999999999 88899999999888543
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.22 E-value=0.064 Score=51.22 Aligned_cols=73 Identities=26% Similarity=0.344 Sum_probs=62.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccc--ccceeeeeehhc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV--SGRIIRVEFAKK 156 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~i~v~~a~~ 156 (275)
.+.++-|.+-+.+-.-|..+|.+||.|.+.+.+++-+ .|.|+|...+.|-.|+.+++|+.+ .|-+.+|.+++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3455667777888999999999999999999888763 799999999999999999999984 588888888763
No 199
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.89 E-value=0.24 Score=37.27 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=55.2
Q ss_pred CCCCcEEEEecCCCCCC-HhH---HHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 171 RETQHKLYVSNLSWKVR-STH---LREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~-~~~---l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
..+-.+|.|+=|..... .+| +...++.||.|..+... | +.-|.|.|+|..+|-+|+.++.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 45566788887766552 233 44555677777777665 2 34699999999999999998886 7779999
Q ss_pred EEEEccc
Q 044184 247 RLKFGQK 253 (275)
Q Consensus 247 ~v~~a~~ 253 (275)
.++|-..
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9998653
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.89 E-value=0.065 Score=42.49 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhh-cCCceeEEEee---eC-CC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCC---
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSA-NFNPVSSKVVF---ES-NE-GRSAGYGFVSFATKEEAEAAISSLDGKELMG--- 243 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~i~~---~~-~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g--- 243 (275)
....|.|++||..++++++.+.+.+ +++........ .. .. ...-.-|+|.|.+.+++......++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999997777 33332222221 11 11 1123458999999999999999999977653
Q ss_pred --eeEEEEEcccC
Q 044184 244 --RPLRLKFGQKN 254 (275)
Q Consensus 244 --~~l~v~~a~~~ 254 (275)
....|.+|--+
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 45667777663
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.85 E-value=0.34 Score=31.60 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 89 SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 89 ~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
.++-++++..+..|+- .. |..|++| -||.|.+..+|++|....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5788899999999974 33 4455543 499999999999999999998887766654
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.73 E-value=3.8 Score=34.77 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=106.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC--------CCCCcceEEEEEcCHHHHHHHHHh----cCcc--c
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK--------GGKNRNFAFVTMASPEEAQAAVNQ----FDTQ--E 143 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--------~~~~~g~afV~f~~~~~A~~a~~~----l~~~--~ 143 (275)
.|.|.+.|+...++--.+...|-+||+|++|.++.+. +......+.+-|-+.+.+...... |... .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999998765 222345778889999887765532 2222 2
Q ss_pred cccceeeeeehhccCCC-----C--CCC--------CCCCCCCCCCcEEEEecCCCCCCHhHH-HHHH---hhcCC----
Q 044184 144 VSGRIIRVEFAKKFKKP-----R--PQR--------SASAPARETQHKLYVSNLSWKVRSTHL-REFF---SANFN---- 200 (275)
Q Consensus 144 ~~g~~i~v~~a~~~~~~-----~--~~~--------~~~~~~~~~~~~l~v~nl~~~~~~~~l-~~~f---~~~g~---- 200 (275)
+....+.+.+..-.-.. . ... ..........+.|.|.-- ..+.++++ .+.+ ..-+.
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceEE
Confidence 55666777765421000 0 000 001122344566777643 44434332 2222 22122
Q ss_pred ceeEEEeee--CCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccC-CeeEEEEEcc
Q 044184 201 PVSSKVVFE--SNEGRSAGYGFVSFATKEEAEAAISSLD--GKELM-GRPLRLKFGQ 252 (275)
Q Consensus 201 v~~~~i~~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~i~-g~~l~v~~a~ 252 (275)
++.+.++-. +...-++.||.+.|-+...|...+..+. +...+ .+..-|+...
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 234444432 2334578999999999999999998875 44444 5555666544
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.29 E-value=0.077 Score=36.72 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=48.4
Q ss_pred EEEEEcCHHHHHHHHHhcCccc--cccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhc
Q 044184 122 AFVTMASPEEAQAAVNQFDTQE--VSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSAN 198 (275)
Q Consensus 122 afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 198 (275)
|.|+|.+..-|...++. .... +.++.+.|........... ..........++|.|.|||..+.+++|++.++-|
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~--k~qv~~~vs~rtVlvsgip~~l~ee~l~D~LeIh 76 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQ--KFQVFSGVSKRTVLVSGIPDVLDEEELRDKLEIH 76 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCce--EEEEEEcccCCEEEEeCCCCCCChhhheeeEEEE
Confidence 68999999999999974 3333 5566666654432211100 0111234557889999999999999998876643
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.21 E-value=0.045 Score=48.86 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=59.8
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSF-SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
++.|-+.-+|+.+ +-.+|...|..||.|.+|.+-.. .-.|.|+|.+..+|-+|.. .++..+++|.|+|.|-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 4555566666664 45689999999999999988443 3479999999999988886 699999999999999876
Q ss_pred c
Q 044184 157 F 157 (275)
Q Consensus 157 ~ 157 (275)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.02 E-value=0.062 Score=49.93 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
+.-+|||+|+...+..+-++.+...+|.|.+++... |||..|..+..+..|+..++...++|+.+.+..-..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 357899999999999999999999999998876543 999999999999999999998889998888775321
Q ss_pred cCCCCCCC----C---CCCCCCCCCcEEEEecCCCCCCHhHHHHHHh
Q 044184 157 FKKPRPQR----S---ASAPARETQHKLYVSNLSWKVRSTHLREFFS 196 (275)
Q Consensus 157 ~~~~~~~~----~---~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 196 (275)
.-...... . ..-.+....+-.+|.++|..+.+......+.
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 11000000 0 0001111145567777777766665555554
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=0.46 Score=40.25 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=55.4
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe-eEEEEEcc
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR-PLRLKFGQ 252 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~-~l~v~~a~ 252 (275)
..=|.|.++|..- -..|..+|.+||.|++.+.. .+ -.+-+|+|.+..+|++||. -||..|+|. .|-|.-..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~n---gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CC---CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 4457777887643 44577889999999876554 22 3488999999999999999 699999864 44566555
Q ss_pred cCCcc
Q 044184 253 KNDDV 257 (275)
Q Consensus 253 ~~~~~ 257 (275)
.+.-.
T Consensus 269 Dksvi 273 (350)
T KOG4285|consen 269 DKSVI 273 (350)
T ss_pred CHHHh
Confidence 55443
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.53 E-value=0.75 Score=39.00 Aligned_cols=69 Identities=29% Similarity=0.419 Sum_probs=52.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccce-eeeee
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRI-IRVEF 153 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-i~v~~ 153 (275)
..=|-|-+.|+.- -.-|...|.+||.|.+.... .+-.|-+|.|.+.-+|.+||.+ +|..|+|.. |-|+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 4567777888754 34577899999998776442 3345999999999999999985 999888764 55555
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.05 E-value=0.19 Score=46.93 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=65.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
..+.++..++||+|+...+..+-++.+...+|.|..+..+. |||+.|.....+.+|+..++-..++|..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34567788999999999999999999999988887766653 899999999999999999999999998887
Q ss_pred EEEc
Q 044184 248 LKFG 251 (275)
Q Consensus 248 v~~a 251 (275)
+.--
T Consensus 105 ~~~d 108 (668)
T KOG2253|consen 105 ENVD 108 (668)
T ss_pred ccch
Confidence 7653
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.35 E-value=0.99 Score=30.11 Aligned_cols=58 Identities=16% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCHhHHHHHHhhcCCcee-----EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 185 KVRSTHLREFFSANFNPVS-----SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v~~-----~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
.++..+|..++...+++.. +.+. ..|+||+-... .|..+++.|++..+.|+.|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788889999988777743 3333 34789887654 789999999999999999999865
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.13 E-value=0.95 Score=40.52 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=57.2
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCc-eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNP-VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g 243 (275)
.+.|+|-.+|..++-.||..++..+-.. ..+++++|+ -.++-.++|.|.+..+|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999999986554 578888853 2345568899999999999999999998763
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.18 E-value=0.21 Score=47.85 Aligned_cols=76 Identities=25% Similarity=0.292 Sum_probs=62.5
Q ss_pred EEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC--CeeEEEEEcccC
Q 044184 177 LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM--GRPLRLKFGQKN 254 (275)
Q Consensus 177 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~--g~~l~v~~a~~~ 254 (275)
.++.|.+-..+-.-|..+|..||.|...+.+++ -..|.|+|...+.|..|+++|+|++.- |-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 344455556777889999999999999998876 335899999999999999999998854 889999999876
Q ss_pred Cccc
Q 044184 255 DDVS 258 (275)
Q Consensus 255 ~~~~ 258 (275)
.-..
T Consensus 375 ~~~e 378 (1007)
T KOG4574|consen 375 PMYE 378 (1007)
T ss_pred cccc
Confidence 5443
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.71 E-value=1.8 Score=28.81 Aligned_cols=59 Identities=20% Similarity=0.378 Sum_probs=36.0
Q ss_pred CCCCHHHHHHhhccCCc-----eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 88 WSFSVAEIKNLFAPCGT-----VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 88 ~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
..++..+|..++...+. |-.|.|.. .|+||+-... .|..++..|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888887643 55677643 3899988765 788999999999999999999864
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.13 E-value=0.52 Score=42.37 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=59.7
Q ss_pred CCCcEEEEecCCCCC-CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 172 ETQHKLYVSNLSWKV-RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
...+.|-+.-.+... +-.+|..+|.+||.+..+.+-.. .--|.|.|.+..+|-+|-. .+|-.|.||.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 344556666666666 55789999999999988766432 2358999999999988877 799999999999999
Q ss_pred ccc
Q 044184 251 GQK 253 (275)
Q Consensus 251 a~~ 253 (275)
-.+
T Consensus 443 hnp 445 (526)
T KOG2135|consen 443 HNP 445 (526)
T ss_pred ecC
Confidence 888
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.81 E-value=3.8 Score=26.69 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=41.8
Q ss_pred CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
.++-++++..+.. ++-..+. .| .+| | ||.|.+..+|+++....+|..+.+..|..
T Consensus 11 ~~~v~d~K~~Lr~-y~~~~I~--~d-~tG----f-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRK-YRWDRIR--DD-RTG----F-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhc-CCcceEE--ec-CCE----E-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677889999998 5444433 33 333 3 79999999999999999999888877654
No 215
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.76 E-value=4.3 Score=35.97 Aligned_cols=59 Identities=15% Similarity=0.335 Sum_probs=50.5
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCc-eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHh
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~ 138 (275)
...-.+.|=|.++|.....+||...|..||. --+|+|+.|. +||-.|.+...|..|+..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 3345689999999999999999999999986 5778888776 899999999999999973
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.79 E-value=15 Score=34.28 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=36.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccC--CeeEEEEEcccCCcccc
Q 044184 217 GYGFVSFATKEEAEAAISSLDGKELM--GRPLRLKFGQKNDDVSE 259 (275)
Q Consensus 217 g~afV~f~~~~~A~~a~~~l~g~~i~--g~~l~v~~a~~~~~~~~ 259 (275)
.||.|+|.+.+.|.......+|.++. |..|.+.|--..-....
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm~Fdd 313 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDMTFDD 313 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCCcccc
Confidence 37999999999999999999999988 78888888766555443
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.28 E-value=12 Score=31.63 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=37.9
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHH
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKE 227 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~ 227 (275)
....|+++||+.++.-.||+..+.+ -+.+-..+... .+.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~-~~~~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRK-RECTPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHh-cCCCceeEeee----cCCcceeEecCCcc
Confidence 3466999999999999999999988 55544445443 24678999997654
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.57 E-value=10 Score=25.97 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=44.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhcc-CCc-eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhc
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAP-CGT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF 139 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l 139 (275)
.-|.-.++..++..+|++.++. ||. |.+|..+.-+.+. --|||.+...+.|.+....+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 4555567889999999999988 674 7888877666332 35999999988888876543
No 219
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.44 E-value=14 Score=24.92 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=43.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhcc-CCc-eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHh
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAP-CGT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~ 138 (275)
.-|+-.++..++..+|++.++. ||. |..|..+.-+.+ .--|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 4566678899999999999988 663 777777665533 23599999888888776654
No 220
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=71.53 E-value=5.6 Score=31.26 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=47.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCC--CCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG--KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
..+++|.. +.....++|.++-+ |.+.++.+.+..++ ..+|-.||+|.+.+.|.+++.. ++.......+..
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r 181 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKR 181 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHH
Confidence 35777776 33444445555555 78888887766655 7789999999999999998874 444443333433
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=71.03 E-value=19 Score=24.24 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=42.8
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (275)
.-|+..++...+..+|++.++..++| ..+..+.-+. ...-|||.+...+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 35677788999999999999998877 3555554432 2446999999888887765543
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=70.95 E-value=18 Score=24.86 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=43.2
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (275)
.-|...++...+..+|++.++..++| ..+..+..+. ...-|+|.+....+|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 35666688899999999999998887 4565555432 2346999999988888876543
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.45 E-value=4.4 Score=29.67 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCH-HHHHHHHH
Q 044184 90 FSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASP-EEAQAAVN 137 (275)
Q Consensus 90 ~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~-~~A~~a~~ 137 (275)
++.++|++.|+.|.++. ++.+.+.. -+.|++.|.|... .--..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 45678999999999875 66666664 4678999999763 33344443
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.11 E-value=7.3 Score=29.60 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=68.9
Q ss_pred CCCHHHHHHhhcc-CCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCCCCCCCCC
Q 044184 89 SFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS 167 (275)
Q Consensus 89 ~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~ 167 (275)
..+-..|.+.+.. ++....+.+..- ..++..+.|.+.+++..++.. ....+.|..+.+....+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~----- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSE----- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccc-----
Confidence 3556666665554 333223333321 346899999999999999873 44557777777765553222111
Q ss_pred CCCCCCCcEEEEecCCCC-CCHhHHHHHHhhcCCceeEEEe
Q 044184 168 APARETQHKLYVSNLSWK-VRSTHLREFFSANFNPVSSKVV 207 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~i~ 207 (275)
.......-=|.|.|||.. ++++-++.+.+.+|.++.+...
T Consensus 98 ~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 98 VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 011112334778899986 5888899999999998877654
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=59.75 E-value=11 Score=31.99 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCce-eEEEEEeCCCCCCcceEEEEEcCHH
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTV-VDVEIIKHKGGKNRNFAFVTMASPE 130 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~~~g~afV~f~~~~ 130 (275)
..-|+|+|||.++.-.+|+..+.+-|-+ .++.+. -+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCcc
Confidence 3569999999999999999999987743 455552 25678999997653
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.97 E-value=19 Score=26.33 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=30.7
Q ss_pred EEEEecCCCC---------CCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCC-HHHHHHHHH
Q 044184 176 KLYVSNLSWK---------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT-KEEAEAAIS 234 (275)
Q Consensus 176 ~l~v~nl~~~---------~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~-~~~A~~a~~ 234 (275)
++.|-|++.. .+.++|++.|.. +...+++.+..+. .+.|+++|.|.. -.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~-f~p~kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAE-FNPLKVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----SEEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHh-cCCceeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4566777553 355789999999 5556677776643 468999999974 333344443
No 227
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.94 E-value=7.9 Score=32.61 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHhhccCCceeEEEEE
Q 044184 77 IRRKLYVFNLPWS------------FSVAEIKNLFAPCGTVVDVEII 111 (275)
Q Consensus 77 ~~~~l~v~nLp~~------------~te~~L~~~F~~~G~i~~v~i~ 111 (275)
-..||++.+||-. -+++-|+..|..||.|.+|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3578999999843 3578899999999999988875
No 228
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.55 E-value=2.2 Score=38.18 Aligned_cols=76 Identities=8% Similarity=-0.123 Sum_probs=60.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..-|+..+|...+++++.-+|..||.|.-+...+.. .|...-.+|+...+. .|..++..+.+..+.|..+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999888776666 555566777776654 6788888888888888888887664
No 229
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=56.70 E-value=15 Score=32.52 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=49.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCc-eeEEEEEeCC---CCCCcceEEEEEcCHHHHHHHHHhcCcccc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEIIKHK---GGKNRNFAFVTMASPEEAQAAVNQFDTQEV 144 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 144 (275)
...|.|++||+..++.+|.+-...+-. +....+.... ...-.+.+||.|...++.......++|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467899999999999999998888653 3322232111 122367899999999998888888888763
No 230
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=53.58 E-value=2.3 Score=39.18 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
.+.||++|++++++-.+|..+++.+--+..+-+-.+. ......+++|.|.-.-....|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4789999999999999999999998766666544333 4456678899998766677777777776543
No 231
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=52.13 E-value=10 Score=26.28 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=22.7
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhh
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLF 99 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F 99 (275)
....+.++|.|.|||..+.+++|++.+
T Consensus 47 ~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 47 FSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EEcccCCEEEEeCCCCCCChhhheeeE
Confidence 455567999999999999999999764
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.50 E-value=39 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=14.6
Q ss_pred HHHHHhhccCCceeEEEE
Q 044184 93 AEIKNLFAPCGTVVDVEI 110 (275)
Q Consensus 93 ~~L~~~F~~~G~i~~v~i 110 (275)
.+||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999875544
No 233
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=48.39 E-value=9.1 Score=34.03 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHhhcc--CCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHH
Q 044184 77 IRRKLYVFNLPWSFSVA--------EIKNLFAP--CGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVN 137 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~--------~L~~~F~~--~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~ 137 (275)
..+.+|+.+.......+ ++...|.. .|++..+...++. +..++|-.|++|...+.+.++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45788888888765555 89999999 6788999998888 88899999999999999998885
No 234
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=45.86 E-value=64 Score=27.68 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=62.4
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeC-------CCCCcccEEEEEeCCHHHHHH----HHHHhCCC
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES-------NEGRSAGYGFVSFATKEEAEA----AISSLDGK 239 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~-------~~~~~~g~afV~f~~~~~A~~----a~~~l~g~ 239 (275)
.-..+.|.+.|+..+++-..+..-|-+||.|+.+.++.+. .......-..+.|-+.+.+.. .++.|...
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3446778899999999999999999999999999888654 112334567899998887654 45555543
Q ss_pred --ccCCeeEEEEEcccCC
Q 044184 240 --ELMGRPLRLKFGQKND 255 (275)
Q Consensus 240 --~i~g~~l~v~~a~~~~ 255 (275)
.+.-..|.++|..-+-
T Consensus 92 K~~L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNY 109 (309)
T ss_pred HHhcCCcceeEEEEEEec
Confidence 4677888888877543
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.85 E-value=38 Score=26.86 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=49.4
Q ss_pred cEEEEecCCCCC-CHh----HHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe-eEEE
Q 044184 175 HKLYVSNLSWKV-RST----HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR-PLRL 248 (275)
Q Consensus 175 ~~l~v~nl~~~~-~~~----~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~-~l~v 248 (275)
..+.+.+++..+ ++. ....+|.+|-..+-..++ ++.+...|.|.+++.|..|...+++..+.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 445566665543 222 333444443333333333 2345567999999999999999999999988 8888
Q ss_pred EEcccCC
Q 044184 249 KFGQKND 255 (275)
Q Consensus 249 ~~a~~~~ 255 (275)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8887764
No 236
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=45.57 E-value=80 Score=24.10 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=39.6
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
+-|+..++...+..+|++.++..++| ..+..+..+. | .--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 45666688999999999999998887 3555554432 2 2359999987776655443
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.54 E-value=51 Score=27.91 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=64.7
Q ss_pred CCCHHHHHHhhccC-C--ceeEEEEEeCCCCCCcceEEEEEcC----HHHHHHHHHhcCcccc--cc--ceeeeeehhcc
Q 044184 89 SFSVAEIKNLFAPC-G--TVVDVEIIKHKGGKNRNFAFVTMAS----PEEAQAAVNQFDTQEV--SG--RIIRVEFAKKF 157 (275)
Q Consensus 89 ~~te~~L~~~F~~~-G--~i~~v~i~~~~~~~~~g~afV~f~~----~~~A~~a~~~l~~~~~--~g--~~i~v~~a~~~ 157 (275)
.++..+|.+-+... . ...+|+|.. ...-||.|.- ....++.+..|+|..+ .| ..+.|+.+...
T Consensus 48 sisnwdlmerlk~aid~~q~dsckire------snid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eak 121 (445)
T KOG2891|consen 48 SISNWDLMERLKGAIDNHQFDSCKIRE------SNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAK 121 (445)
T ss_pred ccchHHHHHHHHhhcccccccceeecc------cccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhc
Confidence 45566666655432 1 134455532 2367888754 3455566666777653 22 23444433221
Q ss_pred CCCCCCC-----------CCCCCCCCCCcEEEEecCCCCC------------CHhHHHHHHhhcCCceeEEEeee
Q 044184 158 KKPRPQR-----------SASAPARETQHKLYVSNLSWKV------------RSTHLREFFSANFNPVSSKVVFE 209 (275)
Q Consensus 158 ~~~~~~~-----------~~~~~~~~~~~~l~v~nl~~~~------------~~~~l~~~f~~~g~v~~~~i~~~ 209 (275)
-.-..+. .....+.....+||+.+||-.| +++-|+..|+.||.|..+.|...
T Consensus 122 idfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 122 IDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 1111111 1113445667889999998642 56789999999999987777543
No 238
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.02 E-value=4.3 Score=36.44 Aligned_cols=81 Identities=6% Similarity=-0.141 Sum_probs=60.6
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~ 254 (275)
...++..+|...+++++..+|+.|+.|.-+..-+.-.+|..+-.+|+.-.. .+|+.+++.+.-+.+.|..+++..+...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 345778899999999999999997777666555555566666678877554 4677788777777788888888887765
Q ss_pred Cc
Q 044184 255 DD 256 (275)
Q Consensus 255 ~~ 256 (275)
-.
T Consensus 83 ~~ 84 (572)
T KOG4365|consen 83 SE 84 (572)
T ss_pred hh
Confidence 43
No 239
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.97 E-value=75 Score=20.73 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=43.4
Q ss_pred hHHHHHHhhcCCc-eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCC
Q 044184 189 THLREFFSANFNP-VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 189 ~~l~~~f~~~g~v-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~ 255 (275)
++|.+-|...|-. ..+.-+..+.++.+...-||+.+-..+... .++=..++|..|.|...+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCCC
Confidence 4566677766654 566667776677777788888876655333 344467889999998876654
No 240
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=39.16 E-value=97 Score=23.65 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=40.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhcc-CCc-eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHH
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAP-CGT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~ 137 (275)
+-|+--+....+..+|++.++. ||. |..|..+.-+.|.- -|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 4555567789999999999987 664 77777776665433 58999977666554443
No 241
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=39.14 E-value=47 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=20.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCcc
Q 044184 217 GYGFVSFATKEEAEAAISSLDGKEL 241 (275)
Q Consensus 217 g~afV~f~~~~~A~~a~~~l~g~~i 241 (275)
.+++|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999888865443
No 242
>PF14893 PNMA: PNMA
Probab=38.85 E-value=25 Score=30.82 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAP 101 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~ 101 (275)
..+.|.|.+||.++++++|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4678999999999999999887654
No 243
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.91 E-value=73 Score=28.57 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=45.4
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCc-eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNP-VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
..-...|-|.++|...-.+||...|+.|++- -+|.++-| ..||-.|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 3456789999999999999999999996654 24555533 2589999999999999874
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.45 E-value=71 Score=27.67 Aligned_cols=57 Identities=28% Similarity=0.304 Sum_probs=37.7
Q ss_pred EEEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhh
Q 044184 122 AFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197 (275)
Q Consensus 122 afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 197 (275)
|||+|.+..+|..|.+.+.... ++.+.+..|.. ...|.=.||.....+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe-----------------P~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE-----------------PDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC-----------------cccccccccCCChHHHHHHHHHHH
Confidence 7999999999999998544432 23345554432 344666777666666666666554
No 245
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.18 E-value=48 Score=22.53 Aligned_cols=35 Identities=6% Similarity=0.179 Sum_probs=23.6
Q ss_pred ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcc
Q 044184 104 TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142 (275)
Q Consensus 104 ~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 142 (275)
.|.++-... .-+||-|||=.+..++..|++.+.+.
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 355554432 36899999999999999999866553
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.81 E-value=5.4 Score=36.89 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=53.8
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~ 245 (275)
.++|+++|++..++-.+|..+++.+-++..+-+..+.........++|.|+-......|+.+|||..+.-..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 467999999999999999999999777766655433333445667889998777777777777776665433
No 247
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=33.83 E-value=1e+02 Score=22.64 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=30.3
Q ss_pred CCCHhHHHHHHhhcCCce-eEEEeee----CCCCCcccEEEEEeCCHHHHHH
Q 044184 185 KVRSTHLREFFSANFNPV-SSKVVFE----SNEGRSAGYGFVSFATKEEAEA 231 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v~-~~~i~~~----~~~~~~~g~afV~f~~~~~A~~ 231 (275)
.++.+||++-+.+.+... +..++++ -.+|++.|+|.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 578889998877755553 3444432 246788889887 677666553
No 248
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=32.69 E-value=1.4e+02 Score=21.86 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=58.8
Q ss_pred CCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc--cccceeeeeehhccCCCCCC
Q 044184 86 LPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE--VSGRIIRVEFAKKFKKPRPQ 163 (275)
Q Consensus 86 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~~a~~~~~~~~~ 163 (275)
||+-++ .|-++|+.=|.|.+|.... .|.+. + |+-.++|.. ++|. |.+--......-
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvt------------qypdn-d---al~~~~G~lE~vDg~-i~IGs~q~~~sV--- 68 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVT------------QYPDN-D---ALLYVHGTLEQVDGN-IRIGSGQTPASV--- 68 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEe------------ccCCc-h---hhheeeeehhhccCc-EEEccCCCcccE---
Confidence 566554 4779999999998875432 22322 2 333355544 4444 444322110000
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhh---cCCceeEEEeeeCCCCCcccEEEEEeCCH
Q 044184 164 RSASAPARETQHKLYVSNLSWKVRSTHLREFFSA---NFNPVSSKVVFESNEGRSAGYGFVSFATK 226 (275)
Q Consensus 164 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~---~g~v~~~~i~~~~~~~~~~g~afV~f~~~ 226 (275)
.....+..+. |.--|+.++-.+++++|.. |-|+..-.+.+|.=...+-..||.-|...
T Consensus 69 ---~i~gTPsgnn--v~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 69 ---RIQGTPSGNN--VIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ---EEecCCCCCc--eecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0000111112 1224678899999999986 45555444555422223455788777654
No 249
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=32.29 E-value=1.8e+02 Score=20.56 Aligned_cols=47 Identities=28% Similarity=0.342 Sum_probs=28.2
Q ss_pred CCCHhHHHHHHhhcCCc-eeEEEeeeC----CCCCcccEEEEEeCCHHHHHHH
Q 044184 185 KVRSTHLREFFSANFNP-VSSKVVFES----NEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v-~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~a 232 (275)
..+..+|++-+....+. .+..++..- ..|.+.|||.| |.+.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 55777888766655554 344444322 24667777777 6777766554
No 250
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=31.37 E-value=21 Score=23.31 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=14.6
Q ss_pred CCCCeEEEcCCCCCCCHHH
Q 044184 76 NIRRKLYVFNLPWSFSVAE 94 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~ 94 (275)
..++++|||+||..|-.+.
T Consensus 25 ~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HcCceEEECCCChHHHHcC
Confidence 3478999999998775543
No 251
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=31.26 E-value=1.5e+02 Score=21.43 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=39.5
Q ss_pred EEEecCCCCCCHhHHHHHHhhcCCcee--EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 044184 177 LYVSNLSWKVRSTHLREFFSANFNPVS--SKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236 (275)
Q Consensus 177 l~v~nl~~~~~~~~l~~~f~~~g~v~~--~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (275)
.|..++...|.-.+|++++..-+.... +.+... ++ .-.|+.|.+...+++.+..+
T Consensus 49 ~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~--d~---~~~f~~F~~~~~~k~vv~~l 105 (108)
T cd01201 49 SYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLA--SR---TSIFFAFPDQNAVKKVVYAL 105 (108)
T ss_pred eccccccceeeHHHHHHHHHHhhhcccceEEEEEe--CC---ceEEEEeCcHHHHHHHHhhc
Confidence 345677788999999999998555543 333333 22 34799999999999988765
No 252
>CHL00030 rpl23 ribosomal protein L23
Probab=30.26 E-value=1.9e+02 Score=20.17 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=25.7
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCce--eEEEee
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNPV--SSKVVF 208 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v~--~~~i~~ 208 (275)
..|+..++...+..+|++.++..++|. .+..+.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 466777889999999999999988873 444443
No 253
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.23 E-value=1.7e+02 Score=19.51 Aligned_cols=62 Identities=8% Similarity=0.156 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCc----eeEEEEEeCC--CCCCcceEEEEEcCHHHHHHHHHhcCccc
Q 044184 81 LYVFNLPWSFSVAEIKNLFAPCGT----VVDVEIIKHK--GGKNRNFAFVTMASPEEAQAAVNQFDTQE 143 (275)
Q Consensus 81 l~v~nLp~~~te~~L~~~F~~~G~----i~~v~i~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 143 (275)
|..+++|..+|.++|...-..... ...|++++.- ....+-||+.+=.|.+.++++.+. .|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCC
Confidence 556788888999998887655321 1234444332 123466888888999988888775 3544
No 254
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=30.13 E-value=1.5e+02 Score=22.27 Aligned_cols=47 Identities=15% Similarity=0.427 Sum_probs=29.4
Q ss_pred CCCHhHHHHHHhhcCCc--eeEEEeee----CCCCCcccEEEEEeCCHHHHHHH
Q 044184 185 KVRSTHLREFFSANFNP--VSSKVVFE----SNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v--~~~~i~~~----~~~~~~~g~afV~f~~~~~A~~a 232 (275)
..+..+|++-+...++| .+..++.. -..|.+.|||.| |++.+.|.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788888888876774 33333322 234677788877 6666665543
No 255
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.37 E-value=4.5e+02 Score=23.85 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=31.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccC--CeeEEEEEcccC
Q 044184 217 GYGFVSFATKEEAEAAISSLDGKELM--GRPLRLKFGQKN 254 (275)
Q Consensus 217 g~afV~f~~~~~A~~a~~~l~g~~i~--g~~l~v~~a~~~ 254 (275)
.||.|.+.+...+.......+|.++. +..+.+.|.-..
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
Confidence 48999999999999999999998877 677777776544
No 256
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=28.09 E-value=49 Score=26.17 Aligned_cols=36 Identities=25% Similarity=0.072 Sum_probs=26.7
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 214 RSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 214 ~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..+|-.||.|.+.+.|...++ -++....-..|...|
T Consensus 148 ~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 148 PFKGSVKVTFQTKEQAFANDD-THEEKGAETELKRSG 183 (205)
T ss_pred CCCCceEEEeecHHHHHhhhh-hhhhhccchHHHHHH
Confidence 568899999999999999887 355555555555555
No 257
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.75 E-value=1.3e+02 Score=20.76 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=28.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~ 127 (275)
..-|||++++..+.+.-...+....+.-.-+-+..+. + ..||+|-..-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C-CCCEEEEEeC
Confidence 4569999998877665444444434433333333333 3 7789998773
No 258
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.48 E-value=42 Score=18.93 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=10.4
Q ss_pred CCCCHHHHHHhhccCCc
Q 044184 88 WSFSVAEIKNLFAPCGT 104 (275)
Q Consensus 88 ~~~te~~L~~~F~~~G~ 104 (275)
..+++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999988653
No 259
>PF15063 TC1: Thyroid cancer protein 1
Probab=27.01 E-value=33 Score=22.89 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCce
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTV 105 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i 105 (275)
|+=-+.||-.+++.++|+.+|..-|..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccch
Confidence 334467888999999999999999973
No 260
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=26.42 E-value=2e+02 Score=22.06 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=24.9
Q ss_pred eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc
Q 044184 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT 141 (275)
Q Consensus 105 i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 141 (275)
|.+|.++.. .+||.||+....+++..+++.+.+
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 556655432 689999999988888899876544
No 261
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=25.60 E-value=2.1e+02 Score=19.51 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=26.9
Q ss_pred CCCHhHHHHHHhhcCCce-eEEEee----eCCCCCcccEEEEEeCCHHHHHHH
Q 044184 185 KVRSTHLREFFSANFNPV-SSKVVF----ESNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v~-~~~i~~----~~~~~~~~g~afV~f~~~~~A~~a 232 (275)
..+..+|++-+....++. +..++. ....+.+.|||.| |.+.+.+.+.
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 457788888777766652 222222 2234566777776 6777776653
No 262
>PRK11901 hypothetical protein; Reviewed
Probab=25.17 E-value=1.7e+02 Score=25.59 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred EEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEE--EcCHHHHHHHHHhc
Q 044184 82 YVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVT--MASPEEAQAAVNQF 139 (275)
Q Consensus 82 ~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~--f~~~~~A~~a~~~l 139 (275)
|.=.|---.+++.|..|...++ +.++.++... +|+.- |..|. |.+.++|+.|+..|
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhC
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.29 E-value=91 Score=27.75 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=47.6
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEee-eCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVF-ESNE--GRSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~-~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
...|.|.+||...++.++.+.+.++-.-+...... .... ..-.+.++|.|...++...-...++|..+-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 45688999999999999999988843333322222 1111 122466889999999988877878887654
No 264
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.18 E-value=1.3e+02 Score=28.16 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=43.3
Q ss_pred EEcCCCCCC---CHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccccccee
Q 044184 82 YVFNLPWSF---SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII 149 (275)
Q Consensus 82 ~v~nLp~~~---te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 149 (275)
+||||+.-. .-..+..+=++||+|-.+++-. .-.|.-.+.+.|++++.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 577776432 3345666667899999888721 236777899999999985 7888888875
No 265
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=23.67 E-value=87 Score=19.49 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=17.8
Q ss_pred CcccEEEEEeCCH-HHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 214 RSAGYGFVSFATK-EEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 214 ~~~g~afV~f~~~-~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
.++|||||...+. .+.--.-..|++ -+.|-.+.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 4689999999871 111111122332 3446666666665
No 266
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=23.05 E-value=1.6e+02 Score=20.41 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=25.6
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCce--eEEEee
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNPV--SSKVVF 208 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v~--~~~i~~ 208 (275)
..+...++...+..+|++.++..+++. .+..+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~ 55 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMN 55 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeE
Confidence 356666889999999999999998884 454443
No 267
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=22.78 E-value=1.9e+02 Score=19.06 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=41.6
Q ss_pred hHHHHHHhhcCCc-eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCC
Q 044184 189 THLREFFSANFNP-VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 189 ~~l~~~f~~~g~v-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~ 255 (275)
.+|.+-|+.+|-. ..+.-+..+.++.+...-+|+.....+-.. .++=+.++|+++.|.......
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 3567777776654 566667666666666777787765543332 345567889999988765443
No 268
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.19 E-value=3.9e+02 Score=25.53 Aligned_cols=88 Identities=8% Similarity=0.136 Sum_probs=55.7
Q ss_pred eEEEEEcCHHHHHHHHHhcCccccccceee---eeehh-------ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhH
Q 044184 121 FAFVTMASPEEAQAAVNQFDTQEVSGRIIR---VEFAK-------KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTH 190 (275)
Q Consensus 121 ~afV~f~~~~~A~~a~~~l~~~~~~g~~i~---v~~a~-------~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 190 (275)
-||+++.++..-+-.-..|+...+.+-.|. -+|.. .+.......-...+.......+|+.+|+.++.++.
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 599999998776666666666654433222 11110 00111111112234455678899999999999988
Q ss_pred HHHHHhhcCCceeEEEee
Q 044184 191 LREFFSANFNPVSSKVVF 208 (275)
Q Consensus 191 l~~~f~~~g~v~~~~i~~ 208 (275)
=.++....-|.+.+.+++
T Consensus 318 Q~~~irsipGlEna~i~r 335 (621)
T COG0445 318 QEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHhCcccccceeec
Confidence 888888878888888875
No 269
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=21.17 E-value=2.8e+02 Score=22.42 Aligned_cols=56 Identities=23% Similarity=0.126 Sum_probs=35.5
Q ss_pred CCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEe-CCHHHHHHHHHHhCCCccC
Q 044184 186 VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSF-ATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 186 ~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f-~~~~~A~~a~~~l~g~~i~ 242 (275)
.+.+++++.....++..-+....-..+|+.++ |-|.+ .+.++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~-GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKA-GGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTT-TCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccC-CceeecCCHHHHHHHHHHHhCCceE
Confidence 46778888887766532222222224456665 44444 6899999999988887775
No 270
>COG5584 Predicted small secreted protein [Function unknown]
Probab=21.08 E-value=2e+02 Score=20.30 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHhhccCCceeEEEEEeCC
Q 044184 85 NLPWSFSVAEIKNLFAPCGTVVDVEIIKHK 114 (275)
Q Consensus 85 nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 114 (275)
|++...-.+-+.+.|+++|+|+.-.|...+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 566667777889999999999988877665
No 271
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.24 E-value=65 Score=25.57 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=47.3
Q ss_pred CeEEEcCCCCCC-----CHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccc-eeeee
Q 044184 79 RKLYVFNLPWSF-----SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR-IIRVE 152 (275)
Q Consensus 79 ~~l~v~nLp~~~-----te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~i~v~ 152 (275)
.++++-+|+..+ ......++|..|.+..-.++++ +.+..-|.|.+.+.|..|.-.+++..+.|. .+..-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 445555665432 2233445666665544444433 345677789999999999999999998887 66666
Q ss_pred ehhc
Q 044184 153 FAKK 156 (275)
Q Consensus 153 ~a~~ 156 (275)
+++.
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 6654
Done!