Query 044184
Match_columns 275
No_of_seqs 193 out of 1856
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 2.8E-37 9.6E-42 242.4 19.9 166 79-253 1-166 (166)
2 4f02_A Polyadenylate-binding p 100.0 8.1E-38 2.8E-42 256.1 16.3 170 76-256 13-183 (213)
3 1l3k_A Heterogeneous nuclear r 100.0 1.6E-36 5.4E-41 244.8 20.0 180 74-260 9-189 (196)
4 1fxl_A Paraneoplastic encephal 100.0 4.2E-36 1.4E-40 235.9 20.9 163 78-251 2-167 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.5E-36 8.5E-41 237.6 19.4 164 77-251 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 6.1E-37 2.1E-41 250.9 14.4 182 76-257 26-208 (216)
7 2cjk_A Nuclear polyadenylated 100.0 3.1E-36 1.1E-40 237.0 13.6 165 77-255 2-167 (167)
8 3smz_A Protein raver-1, ribonu 100.0 9E-35 3.1E-39 248.0 20.0 206 44-258 61-268 (284)
9 3nmr_A Cugbp ELAV-like family 100.0 1.8E-34 6.3E-39 228.3 20.1 165 77-252 2-175 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 5.4E-34 1.8E-38 225.2 17.6 159 77-252 3-172 (172)
11 2yh0_A Splicing factor U2AF 65 100.0 8.1E-34 2.8E-38 229.2 19.0 174 77-256 3-196 (198)
12 2ghp_A U4/U6 snRNA-associated 100.0 8.4E-34 2.9E-38 242.9 17.0 205 44-255 85-292 (292)
13 1fje_B Nucleolin RBD12, protei 100.0 1.7E-34 5.9E-39 228.8 11.6 166 74-254 9-174 (175)
14 3tyt_A Heterogeneous nuclear r 100.0 3.5E-33 1.2E-37 226.8 19.2 169 77-251 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 8.4E-33 2.9E-37 235.5 20.8 172 74-252 5-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 1.2E-32 4.2E-37 227.7 19.9 172 74-254 30-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 9.1E-33 3.1E-37 223.3 16.3 168 78-254 3-197 (198)
18 3smz_A Protein raver-1, ribonu 100.0 8E-32 2.7E-36 229.7 20.6 158 76-256 20-177 (284)
19 3sde_A Paraspeckle component 1 100.0 1E-31 3.5E-36 226.4 19.1 159 75-256 19-181 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 9.2E-32 3.2E-36 230.2 18.1 164 73-257 36-200 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-24 4.2E-29 169.4 15.4 151 107-258 2-154 (158)
22 4f25_A Polyadenylate-binding p 99.9 8.5E-24 2.9E-28 155.8 9.3 108 78-189 5-112 (115)
23 2i2y_A Fusion protein consists 99.9 3.5E-23 1.2E-27 159.8 11.3 134 116-255 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 4.5E-22 1.6E-26 142.4 10.2 80 77-156 18-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.9 1.6E-21 5.4E-26 139.6 11.2 82 172-253 17-98 (99)
26 2lxi_A RNA-binding protein 10; 99.8 3.6E-21 1.2E-25 135.6 7.7 84 174-257 1-86 (91)
27 2lea_A Serine/arginine-rich sp 99.8 4.9E-21 1.7E-25 144.9 8.7 127 120-258 5-131 (135)
28 2lxi_A RNA-binding protein 10; 99.8 1.9E-21 6.6E-26 137.0 5.7 82 78-159 1-85 (91)
29 3s8s_A Histone-lysine N-methyl 99.8 1.5E-20 5.2E-25 137.0 10.4 80 77-156 5-85 (110)
30 3s8s_A Histone-lysine N-methyl 99.8 1.9E-20 6.5E-25 136.5 10.2 85 172-256 4-88 (110)
31 2lkz_A RNA-binding protein 5; 99.8 5.5E-21 1.9E-25 135.4 6.5 82 75-156 6-94 (95)
32 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-19 4E-24 131.3 12.3 85 76-160 13-100 (105)
33 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.9E-20 2E-24 143.8 11.5 135 124-258 11-156 (165)
34 2lkz_A RNA-binding protein 5; 99.8 3.3E-20 1.1E-24 131.4 9.1 83 171-253 6-94 (95)
35 2dnz_A Probable RNA-binding pr 99.8 1.3E-19 4.5E-24 128.6 12.1 84 77-160 4-88 (95)
36 2cq0_A Eukaryotic translation 99.8 9.1E-20 3.1E-24 131.4 11.3 87 74-160 11-98 (103)
37 1whw_A Hypothetical protein ri 99.8 8.7E-20 3E-24 130.5 11.1 85 76-160 6-91 (99)
38 2do4_A Squamous cell carcinoma 99.8 1.2E-19 4E-24 130.1 11.5 84 75-158 14-97 (100)
39 2fy1_A RNA-binding motif prote 99.8 1.1E-19 3.8E-24 133.9 11.6 87 75-161 4-90 (116)
40 3md1_A Nuclear and cytoplasmic 99.8 8.3E-20 2.8E-24 126.3 10.2 79 79-157 2-81 (83)
41 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.7E-20 1.9E-24 128.3 9.4 80 77-156 5-85 (87)
42 3md1_A Nuclear and cytoplasmic 99.8 1.4E-19 4.7E-24 125.2 11.2 81 175-255 2-82 (83)
43 2hvz_A Splicing factor, argini 99.8 3.2E-20 1.1E-24 133.4 8.2 100 79-183 1-100 (101)
44 2dgo_A Cytotoxic granule-assoc 99.8 2.1E-19 7.2E-24 132.1 12.8 86 75-160 12-98 (115)
45 2d9p_A Polyadenylate-binding p 99.8 1.6E-19 5.4E-24 130.2 11.9 86 75-161 12-97 (103)
46 2dgs_A DAZ-associated protein 99.8 1.5E-19 5.1E-24 129.3 11.7 85 75-160 7-92 (99)
47 3p5t_L Cleavage and polyadenyl 99.8 2E-20 6.9E-25 131.5 6.8 81 79-159 2-85 (90)
48 1x5u_A Splicing factor 3B subu 99.8 1.6E-19 5.5E-24 130.5 11.8 87 74-160 11-98 (105)
49 1p27_B RNA-binding protein 8A; 99.8 9.1E-20 3.1E-24 132.1 10.4 84 75-158 20-104 (106)
50 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-19 4.3E-24 133.4 11.1 85 76-160 23-108 (115)
51 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-19 4.8E-24 126.3 10.7 83 172-254 4-86 (87)
52 2dnm_A SRP46 splicing factor; 99.8 8.3E-20 2.8E-24 131.6 9.8 86 75-160 10-96 (103)
53 1x5t_A Splicing factor 3B subu 99.8 7.9E-20 2.7E-24 130.0 9.5 84 77-160 4-89 (96)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.2E-20 2.1E-24 127.5 8.6 80 76-155 5-85 (85)
55 2x1f_A MRNA 3'-END-processing 99.8 8.6E-20 3E-24 129.8 9.4 82 77-158 1-83 (96)
56 2dgs_A DAZ-associated protein 99.8 3.6E-19 1.2E-23 127.3 12.4 88 170-258 6-93 (99)
57 1s79_A Lupus LA protein; RRM, 99.8 1E-19 3.4E-24 131.0 9.4 80 76-156 9-88 (103)
58 1whw_A Hypothetical protein ri 99.8 2.4E-19 8.3E-24 128.2 11.4 88 171-258 5-92 (99)
59 2x1f_A MRNA 3'-END-processing 99.8 2E-19 6.8E-24 127.9 10.7 86 173-258 1-86 (96)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.1E-19 7.1E-24 124.8 10.5 82 171-252 4-85 (85)
61 2dgo_A Cytotoxic granule-assoc 99.8 6E-19 2.1E-23 129.7 13.5 92 169-260 10-101 (115)
62 2cph_A RNA binding motif prote 99.8 2.6E-19 9E-24 129.9 11.5 87 74-160 11-100 (107)
63 4f25_A Polyadenylate-binding p 99.8 1.9E-19 6.6E-24 132.4 10.9 83 174-258 5-87 (115)
64 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.7E-24 130.7 9.3 86 76-161 10-96 (102)
65 3lqv_A PRE-mRNA branch site pr 99.8 6.1E-20 2.1E-24 135.0 8.1 104 76-200 6-109 (115)
66 2la6_A RNA-binding protein FUS 99.8 1.7E-19 5.8E-24 129.0 10.2 82 74-155 9-99 (99)
67 1oo0_B CG8781-PA, drosophila Y 99.8 1.1E-19 3.9E-24 132.5 9.4 85 74-158 22-107 (110)
68 2jrs_A RNA-binding protein 39; 99.8 3.5E-19 1.2E-23 129.5 11.9 88 169-256 21-108 (108)
69 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-19 4.5E-24 130.3 9.5 85 76-160 10-95 (102)
70 1x4h_A RNA-binding protein 28; 99.8 3E-19 1E-23 130.4 11.4 86 75-160 12-104 (111)
71 3p5t_L Cleavage and polyadenyl 99.8 5.1E-20 1.7E-24 129.4 6.9 83 175-257 2-86 (90)
72 2dnz_A Probable RNA-binding pr 99.8 3.8E-19 1.3E-23 126.2 11.5 86 172-257 3-88 (95)
73 2cpz_A CUG triplet repeat RNA- 99.8 4.5E-19 1.5E-23 130.4 12.3 89 170-258 21-109 (115)
74 1x5t_A Splicing factor 3B subu 99.8 2.7E-19 9.1E-24 127.2 10.7 87 172-258 3-90 (96)
75 3ns6_A Eukaryotic translation 99.8 3.9E-20 1.3E-24 132.7 6.3 81 77-157 5-93 (100)
76 1u6f_A Tcubp1, RNA-binding pro 99.8 5.3E-19 1.8E-23 134.4 13.0 88 73-160 37-125 (139)
77 2la6_A RNA-binding protein FUS 99.8 5.3E-19 1.8E-23 126.4 12.2 85 168-252 7-99 (99)
78 1p27_B RNA-binding protein 8A; 99.8 3.7E-19 1.3E-23 128.8 11.6 87 170-256 19-105 (106)
79 2e5h_A Zinc finger CCHC-type a 99.8 2.1E-19 7.2E-24 127.2 10.0 80 76-155 14-94 (94)
80 2cqc_A Arginine/serine-rich sp 99.8 1.7E-19 5.9E-24 127.9 9.5 82 75-156 12-94 (95)
81 2dhg_A TRNA selenocysteine ass 99.8 3.7E-19 1.3E-23 128.4 11.4 86 75-160 6-93 (104)
82 2cpe_A RNA-binding protein EWS 99.8 2.4E-19 8.2E-24 131.4 10.4 88 73-160 10-106 (113)
83 1x5s_A Cold-inducible RNA-bind 99.8 4.5E-19 1.5E-23 127.5 11.6 88 170-257 8-95 (102)
84 2cq0_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 127.5 11.8 89 170-258 11-99 (103)
85 2dnm_A SRP46 splicing factor; 99.8 2.7E-19 9.2E-24 128.9 10.4 89 169-257 8-96 (103)
86 2jrs_A RNA-binding protein 39; 99.8 2.9E-19 9.9E-24 129.9 10.6 83 75-157 23-106 (108)
87 2do0_A HnRNP M, heterogeneous 99.8 6.3E-19 2.2E-23 129.3 12.6 84 75-158 12-95 (114)
88 2cqc_A Arginine/serine-rich sp 99.8 5E-19 1.7E-23 125.5 11.6 85 169-253 10-94 (95)
89 1x5u_A Splicing factor 3B subu 99.8 4.7E-19 1.6E-23 128.1 11.7 89 169-257 10-98 (105)
90 2ywk_A Putative RNA-binding pr 99.8 1.6E-19 5.6E-24 128.1 9.1 81 76-156 14-94 (95)
91 2do4_A Squamous cell carcinoma 99.8 9.6E-19 3.3E-23 125.3 13.1 87 169-256 12-98 (100)
92 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.5E-19 1.2E-23 128.0 10.8 89 170-258 8-96 (102)
93 2div_A TRNA selenocysteine ass 99.8 2.1E-19 7E-24 128.6 9.5 83 76-158 7-95 (99)
94 2e5h_A Zinc finger CCHC-type a 99.8 5E-19 1.7E-23 125.3 11.3 84 169-252 11-94 (94)
95 2cq3_A RNA-binding protein 9; 99.8 7.6E-19 2.6E-23 126.5 12.3 86 74-160 11-96 (103)
96 2dgp_A Bruno-like 4, RNA bindi 99.8 2.4E-19 8.1E-24 129.9 9.5 86 75-160 10-99 (106)
97 2dng_A Eukaryotic translation 99.8 6.6E-19 2.3E-23 126.9 11.7 82 76-159 13-95 (103)
98 2kxn_B Transformer-2 protein h 99.8 2.4E-19 8.3E-24 134.4 9.8 85 74-158 42-127 (129)
99 2cpf_A RNA binding motif prote 99.8 3.7E-19 1.3E-23 127.0 10.3 85 77-161 4-92 (98)
100 3ns6_A Eukaryotic translation 99.8 5.8E-20 2E-24 131.7 6.0 85 173-257 5-96 (100)
101 1x4h_A RNA-binding protein 28; 99.8 7.4E-19 2.5E-23 128.3 12.0 89 170-258 11-105 (111)
102 1oo0_B CG8781-PA, drosophila Y 99.8 5E-19 1.7E-23 129.1 10.9 88 170-257 22-109 (110)
103 2cqd_A RNA-binding region cont 99.8 6.5E-19 2.2E-23 129.7 11.6 88 74-162 13-101 (116)
104 2khc_A Testis-specific RNP-typ 99.8 3.6E-19 1.2E-23 131.5 9.9 82 74-155 36-118 (118)
105 2cph_A RNA binding motif prote 99.8 9.4E-19 3.2E-23 126.9 11.9 89 169-257 10-100 (107)
106 2dgv_A HnRNP M, heterogeneous 99.8 6.3E-19 2.2E-23 124.2 10.7 83 76-159 6-88 (92)
107 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.6E-19 2.6E-23 126.6 11.3 86 74-160 11-96 (103)
108 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-18 5.8E-23 125.1 13.1 88 170-258 11-101 (105)
109 3s7r_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 123.3 10.0 80 74-154 7-87 (87)
110 2d9p_A Polyadenylate-binding p 99.8 1E-18 3.5E-23 125.9 11.7 88 169-258 10-97 (103)
111 1x4e_A RNA binding motif, sing 99.8 2.5E-19 8.4E-24 124.5 7.9 80 76-155 3-83 (85)
112 3ucg_A Polyadenylate-binding p 99.8 5.2E-19 1.8E-23 123.9 9.6 78 78-156 6-84 (89)
113 1sjq_A Polypyrimidine tract-bi 99.8 4.1E-19 1.4E-23 127.3 9.1 80 76-160 14-95 (105)
114 2div_A TRNA selenocysteine ass 99.8 8.9E-19 3E-23 125.2 11.0 87 170-256 5-96 (99)
115 1wi8_A EIF-4B, eukaryotic tran 99.8 7.7E-19 2.6E-23 126.8 10.7 82 76-159 13-96 (104)
116 2cpf_A RNA binding motif prote 99.8 6.4E-19 2.2E-23 125.7 10.2 87 172-258 3-92 (98)
117 2cqp_A RNA-binding protein 12; 99.8 9.6E-19 3.3E-23 124.8 10.9 86 170-255 11-96 (98)
118 2cq4_A RNA binding motif prote 99.8 2.1E-19 7.1E-24 132.0 7.6 81 77-158 24-105 (114)
119 2dgp_A Bruno-like 4, RNA bindi 99.8 1E-18 3.5E-23 126.5 11.1 89 169-257 8-99 (106)
120 2m2b_A RNA-binding protein 10; 99.8 3.2E-19 1.1E-23 134.3 8.7 84 76-160 21-111 (131)
121 3ex7_B RNA-binding protein 8A; 99.8 4.9E-19 1.7E-23 132.3 9.7 88 74-161 18-106 (126)
122 3ulh_A THO complex subunit 4; 99.8 6.1E-19 2.1E-23 127.9 9.8 81 75-155 26-106 (107)
123 2fy1_A RNA-binding motif prote 99.8 1.7E-18 5.9E-23 127.4 12.3 87 171-258 4-90 (116)
124 3n9u_C Cleavage and polyadenyl 99.8 4.9E-19 1.7E-23 137.0 9.5 80 77-156 54-136 (156)
125 2cpe_A RNA-binding protein EWS 99.8 1.6E-18 5.5E-23 127.0 11.8 88 170-257 11-106 (113)
126 2dh8_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 127.4 9.4 84 75-159 13-97 (105)
127 1p1t_A Cleavage stimulation fa 99.8 2.5E-19 8.7E-24 129.3 7.2 87 172-258 6-92 (104)
128 4a8x_A RNA-binding protein wit 99.8 4E-19 1.4E-23 124.2 8.0 81 77-157 3-85 (88)
129 1x4b_A Heterogeneous nuclear r 99.8 5.7E-19 2E-23 130.0 9.2 83 77-160 26-109 (116)
130 2dng_A Eukaryotic translation 99.8 2.2E-18 7.4E-23 124.2 12.0 87 169-257 10-96 (103)
131 2kxn_B Transformer-2 protein h 99.8 8E-19 2.7E-23 131.6 10.0 87 169-255 41-127 (129)
132 2kt5_A RNA and export factor-b 99.8 2.1E-18 7.1E-23 128.5 12.0 85 75-159 32-116 (124)
133 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.5E-19 1.2E-23 127.7 7.5 82 74-157 15-98 (100)
134 2cqd_A RNA-binding region cont 99.8 2.2E-18 7.4E-23 126.9 11.9 92 168-260 11-102 (116)
135 4a8x_A RNA-binding protein wit 99.8 1E-18 3.5E-23 122.1 9.6 83 173-255 3-86 (88)
136 1p1t_A Cleavage stimulation fa 99.8 5.9E-19 2E-23 127.3 8.6 82 77-158 7-89 (104)
137 2mss_A Protein (musashi1); RNA 99.8 3.6E-19 1.2E-23 120.6 6.9 74 80-154 1-75 (75)
138 2dgw_A Probable RNA-binding pr 99.8 2.8E-18 9.6E-23 120.7 11.8 83 170-255 6-88 (91)
139 1wi8_A EIF-4B, eukaryotic tran 99.8 1.9E-18 6.5E-23 124.7 11.1 86 170-257 11-97 (104)
140 2cq3_A RNA-binding protein 9; 99.8 4.8E-18 1.7E-22 122.3 13.2 88 169-258 10-97 (103)
141 1x4a_A Splicing factor, argini 99.8 3.2E-18 1.1E-22 124.6 12.3 84 75-160 19-102 (109)
142 3pgw_S U1-70K; protein-RNA com 99.8 1.8E-19 6.1E-24 161.5 6.8 162 95-256 9-184 (437)
143 2khc_A Testis-specific RNP-typ 99.8 1.2E-18 4E-23 128.7 10.1 84 169-252 35-118 (118)
144 2dgx_A KIAA0430 protein; RRM d 99.8 8.3E-19 2.8E-23 124.7 8.9 81 77-159 8-92 (96)
145 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-18 4.3E-23 126.7 9.9 84 74-158 21-105 (109)
146 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.7E-18 1.6E-22 122.3 12.8 87 169-257 10-96 (103)
147 1u6f_A Tcubp1, RNA-binding pro 99.8 3.9E-18 1.3E-22 129.6 13.0 90 169-258 37-126 (139)
148 2cq1_A PTB-like protein L; RRM 99.8 3E-18 1E-22 122.6 11.7 81 75-160 12-94 (101)
149 2dhg_A TRNA selenocysteine ass 99.8 1.3E-18 4.4E-23 125.5 9.8 87 171-258 6-94 (104)
150 2kt5_A RNA and export factor-b 99.8 5.9E-18 2E-22 126.1 13.7 88 169-257 30-117 (124)
151 3n9u_C Cleavage and polyadenyl 99.8 1.1E-18 3.9E-23 134.9 10.1 83 173-255 54-138 (156)
152 1s79_A Lupus LA protein; RRM, 99.8 5.7E-19 2E-23 127.0 7.5 84 171-256 8-91 (103)
153 2dgw_A Probable RNA-binding pr 99.8 1.9E-18 6.4E-23 121.6 10.0 80 76-157 8-87 (91)
154 1x4d_A Matrin 3; structural ge 99.8 1E-18 3.6E-23 125.0 8.7 79 76-159 13-94 (102)
155 1x5o_A RNA binding motif, sing 99.8 3.3E-18 1.1E-22 125.5 11.7 83 74-156 21-111 (114)
156 2cqg_A TDP-43, TAR DNA-binding 99.8 4.1E-18 1.4E-22 122.7 11.9 84 75-160 12-96 (103)
157 3r27_A HnRNP L, heterogeneous 99.8 2E-18 6.8E-23 122.5 10.0 80 170-255 17-98 (100)
158 2dgx_A KIAA0430 protein; RRM d 99.8 3E-18 1E-22 121.8 11.0 84 171-257 6-93 (96)
159 2cqp_A RNA-binding protein 12; 99.8 7.5E-19 2.6E-23 125.4 7.9 80 77-156 14-94 (98)
160 2ywk_A Putative RNA-binding pr 99.8 2E-18 6.8E-23 122.4 10.1 83 170-253 12-94 (95)
161 2nlw_A Eukaryotic translation 99.8 7.8E-19 2.7E-23 127.0 8.1 83 74-157 11-100 (105)
162 2jwn_A Embryonic polyadenylate 99.8 8.9E-19 3E-23 130.5 8.6 82 77-159 35-117 (124)
163 3ucg_A Polyadenylate-binding p 99.8 2.4E-18 8.1E-23 120.5 10.2 81 174-255 6-86 (89)
164 1wez_A HnRNP H', FTP-3, hetero 99.8 1.9E-18 6.5E-23 124.2 9.8 81 76-158 13-93 (102)
165 3ulh_A THO complex subunit 4; 99.8 3.1E-18 1.1E-22 124.2 11.1 83 170-253 25-107 (107)
166 2ki2_A SS-DNA binding protein 99.8 2.2E-19 7.5E-24 126.1 4.8 80 79-159 2-82 (90)
167 1wex_A Hypothetical protein (r 99.8 3.8E-18 1.3E-22 122.8 11.3 81 76-161 13-95 (104)
168 2ek1_A RNA-binding protein 12; 99.8 1.1E-18 3.8E-23 123.7 8.5 83 171-253 12-94 (95)
169 2fc9_A NCL protein; structure 99.8 2.7E-18 9.3E-23 123.2 10.6 83 75-160 12-94 (101)
170 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2E-18 7E-23 131.2 10.4 80 75-154 60-140 (140)
171 3ex7_B RNA-binding protein 8A; 99.8 2.3E-18 7.9E-23 128.6 10.5 90 169-258 17-106 (126)
172 2dgv_A HnRNP M, heterogeneous 99.8 3.2E-18 1.1E-22 120.6 10.7 86 170-257 4-89 (92)
173 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.1E-19 1.8E-23 120.4 6.3 75 79-154 1-76 (77)
174 2lea_A Serine/arginine-rich sp 99.8 6E-19 2.1E-23 133.4 7.3 85 76-160 45-130 (135)
175 2wbr_A GW182, gawky, LD47780P; 99.8 9.2E-19 3.2E-23 120.0 7.4 73 78-155 7-79 (89)
176 1wg5_A Heterogeneous nuclear r 99.8 3.3E-18 1.1E-22 123.4 10.8 81 76-157 13-94 (104)
177 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.3E-19 2.1E-23 126.3 6.9 86 169-256 14-100 (100)
178 2ad9_A Polypyrimidine tract-bi 99.8 2.7E-18 9.2E-23 126.0 10.3 82 74-160 27-110 (119)
179 3r27_A HnRNP L, heterogeneous 99.8 2E-18 6.9E-23 122.4 9.4 78 75-157 18-97 (100)
180 2dis_A Unnamed protein product 99.8 2.6E-18 8.9E-23 125.0 10.3 84 76-159 6-94 (109)
181 2ek1_A RNA-binding protein 12; 99.8 6E-19 2E-23 125.1 6.6 78 78-155 15-93 (95)
182 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-18 6.2E-23 134.3 9.9 85 76-160 68-153 (158)
183 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.1E-18 1E-22 132.8 11.1 84 76-159 37-121 (156)
184 2m2b_A RNA-binding protein 10; 99.8 1.5E-18 5.1E-23 130.6 8.9 87 169-256 18-110 (131)
185 2dis_A Unnamed protein product 99.8 2.9E-18 1E-22 124.7 10.2 88 171-258 5-96 (109)
186 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-18 5.8E-23 124.0 8.7 82 171-258 13-96 (105)
187 2krb_A Eukaryotic translation 99.8 1.1E-18 3.8E-23 120.0 7.5 74 78-152 1-81 (81)
188 3s7r_A Heterogeneous nuclear r 99.8 4.4E-18 1.5E-22 118.6 10.6 81 170-251 7-87 (87)
189 2do0_A HnRNP M, heterogeneous 99.8 1E-17 3.5E-22 122.8 13.0 87 170-257 11-97 (114)
190 2err_A Ataxin-2-binding protei 99.8 1.2E-18 4.2E-23 126.8 8.0 81 75-156 26-106 (109)
191 2rs2_A Musashi-1, RNA-binding 99.8 2.9E-18 9.8E-23 124.8 9.8 87 170-257 21-107 (109)
192 2dh8_A DAZ-associated protein 99.8 2.1E-18 7.2E-23 124.7 8.8 89 169-258 11-99 (105)
193 2db1_A Heterogeneous nuclear r 99.8 2E-18 6.9E-23 127.4 8.8 80 76-156 15-97 (118)
194 2cpy_A RNA-binding protein 12; 99.8 1.4E-18 4.9E-23 127.5 7.8 81 76-157 13-94 (114)
195 2mss_A Protein (musashi1); RNA 99.8 1.6E-18 5.3E-23 117.5 7.4 75 176-251 1-75 (75)
196 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-17 4.2E-22 120.1 12.4 87 170-258 11-97 (103)
197 2a3j_A U1 small nuclear ribonu 99.8 4.5E-18 1.5E-22 126.8 10.2 87 170-259 25-115 (127)
198 1x4e_A RNA binding motif, sing 99.8 5.5E-19 1.9E-23 122.7 4.9 82 172-253 3-84 (85)
199 2hgl_A HNRPF protein, heteroge 99.8 1.8E-18 6.2E-23 130.5 8.0 81 75-156 41-124 (136)
200 2dnq_A RNA-binding protein 4B; 99.8 8.4E-18 2.9E-22 118.0 10.9 78 76-160 6-83 (90)
201 2cpi_A CCR4-NOT transcription 99.8 3.8E-18 1.3E-22 124.6 9.3 82 77-158 14-102 (111)
202 2cq4_A RNA binding motif prote 99.7 1.6E-18 5.3E-23 127.3 7.1 84 172-256 23-106 (114)
203 2ki2_A SS-DNA binding protein 99.7 1E-18 3.5E-23 122.7 5.9 82 175-257 2-83 (90)
204 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4E-18 1.4E-22 133.3 9.9 85 75-159 69-154 (165)
205 1x4d_A Matrin 3; structural ge 99.7 3.7E-18 1.3E-22 122.1 8.7 82 170-257 11-95 (102)
206 2cq1_A PTB-like protein L; RRM 99.7 1.3E-17 4.6E-22 119.2 11.4 83 169-257 10-94 (101)
207 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-17 3.7E-22 122.8 11.1 83 170-258 27-111 (119)
208 1x4b_A Heterogeneous nuclear r 99.7 4.8E-18 1.6E-22 125.1 9.3 87 171-258 24-110 (116)
209 1wel_A RNA-binding protein 12; 99.7 2.7E-18 9.1E-23 128.0 8.0 87 169-256 20-106 (124)
210 2fc8_A NCL protein; structure 99.7 1.1E-17 3.7E-22 120.2 11.0 86 169-257 10-95 (102)
211 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.4E-17 4.9E-22 129.0 12.3 87 170-256 35-121 (156)
212 2jwn_A Embryonic polyadenylate 99.7 1.1E-17 3.6E-22 124.6 11.1 83 173-256 35-117 (124)
213 2a3j_A U1 small nuclear ribonu 99.7 4.3E-18 1.5E-22 126.9 8.9 80 77-158 28-111 (127)
214 1x4a_A Splicing factor, argini 99.7 1.7E-17 5.8E-22 120.7 11.9 85 170-257 18-102 (109)
215 1wel_A RNA-binding protein 12; 99.7 1.9E-18 6.4E-23 128.8 6.8 80 76-156 23-103 (124)
216 2cpx_A Hypothetical protein FL 99.7 2.1E-18 7.1E-23 126.8 7.0 86 75-160 22-108 (115)
217 2wbr_A GW182, gawky, LD47780P; 99.7 6.9E-18 2.4E-22 115.6 9.0 74 173-252 6-79 (89)
218 1wex_A Hypothetical protein (r 99.7 1.3E-17 4.3E-22 120.1 10.9 82 170-257 11-94 (104)
219 2err_A Ataxin-2-binding protei 99.7 9.3E-18 3.2E-22 122.1 10.3 85 169-255 24-108 (109)
220 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-18 5.7E-23 125.6 6.2 81 75-156 8-91 (107)
221 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.3E-18 1.1E-22 116.4 7.3 76 175-251 1-76 (77)
222 2cpi_A CCR4-NOT transcription 99.7 7.7E-18 2.6E-22 123.0 9.7 86 170-255 11-102 (111)
223 1x5o_A RNA binding motif, sing 99.7 2.2E-17 7.5E-22 121.1 12.1 85 170-255 21-113 (114)
224 2nlw_A Eukaryotic translation 99.7 6.1E-18 2.1E-22 122.2 9.0 85 171-257 12-103 (105)
225 1x4f_A Matrin 3; structural ge 99.7 8.9E-18 3.1E-22 121.9 9.8 81 75-160 22-105 (112)
226 1fj7_A Nucleolin RBD1, protein 99.7 1.9E-18 6.4E-23 124.0 6.2 85 171-257 14-98 (101)
227 1x4g_A Nucleolysin TIAR; struc 99.7 7.4E-18 2.5E-22 122.6 9.4 82 74-160 21-102 (109)
228 1fj7_A Nucleolin RBD1, protein 99.7 9.2E-19 3.2E-23 125.6 4.3 82 75-158 14-96 (101)
229 2cpx_A Hypothetical protein FL 99.7 7.3E-18 2.5E-22 123.8 9.3 89 170-258 21-109 (115)
230 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-17 5.5E-22 126.2 11.4 84 168-251 57-140 (140)
231 3pgw_S U1-70K; protein-RNA com 99.7 8.1E-18 2.8E-22 150.8 11.2 82 76-157 100-182 (437)
232 1x4c_A Splicing factor, argini 99.7 2.1E-17 7.1E-22 120.1 11.3 79 76-160 13-96 (108)
233 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-18 5.3E-23 117.4 4.9 74 80-154 1-75 (75)
234 1wg5_A Heterogeneous nuclear r 99.7 1.3E-17 4.3E-22 120.3 10.0 85 169-255 10-95 (104)
235 2dnn_A RNA-binding protein 12; 99.7 4.3E-18 1.5E-22 123.5 7.5 77 78-156 16-92 (109)
236 2fc8_A NCL protein; structure 99.7 2.1E-17 7.3E-22 118.7 11.0 83 74-159 11-94 (102)
237 2cpy_A RNA-binding protein 12; 99.7 8.1E-18 2.8E-22 123.4 8.9 85 170-256 11-96 (114)
238 2cpj_A Non-POU domain-containi 99.7 1.8E-17 6E-22 118.5 10.5 79 76-159 13-91 (99)
239 1why_A Hypothetical protein ri 99.7 1.2E-17 4E-22 119.0 9.5 78 76-158 15-94 (97)
240 1wez_A HnRNP H', FTP-3, hetero 99.7 1.1E-17 3.6E-22 120.3 9.3 83 170-255 11-93 (102)
241 1fjc_A Nucleolin RBD2, protein 99.7 4.2E-18 1.5E-22 121.0 7.0 82 73-158 11-92 (96)
242 2e5j_A Methenyltetrahydrofolat 99.7 5E-17 1.7E-21 115.7 12.5 83 169-256 14-96 (97)
243 3lqv_A PRE-mRNA branch site pr 99.7 6.6E-18 2.3E-22 124.1 8.1 84 171-257 5-88 (115)
244 2ytc_A PRE-mRNA-splicing facto 99.7 1.5E-17 5E-22 115.4 9.4 76 75-155 9-85 (85)
245 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-17 4.3E-22 118.8 9.2 80 75-158 16-95 (97)
246 2jvo_A Nucleolar protein 3; nu 99.7 1.3E-17 4.4E-22 121.1 9.2 78 74-158 27-104 (108)
247 2fc9_A NCL protein; structure 99.7 2.4E-17 8.2E-22 118.2 10.4 83 170-256 11-93 (101)
248 1nu4_A U1A RNA binding domain; 99.7 3.7E-18 1.3E-22 121.5 5.9 82 75-158 5-90 (97)
249 2xnq_A Nuclear polyadenylated 99.7 2E-17 6.8E-22 117.8 9.7 78 73-157 17-95 (97)
250 1nu4_A U1A RNA binding domain; 99.7 5.7E-18 1.9E-22 120.5 6.8 85 171-258 5-93 (97)
251 3q2s_C Cleavage and polyadenyl 99.7 8.3E-18 2.8E-22 138.3 8.7 80 77-156 67-149 (229)
252 2hgl_A HNRPF protein, heteroge 99.7 8.4E-18 2.9E-22 126.8 8.0 85 169-255 39-126 (136)
253 2la4_A Nuclear and cytoplasmic 99.7 1.2E-17 4.2E-22 119.7 8.6 75 77-156 26-100 (101)
254 2dgt_A RNA-binding protein 30; 99.7 2.7E-17 9.1E-22 115.9 10.1 79 75-160 7-85 (92)
255 2db1_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 123.5 8.4 84 170-255 13-99 (118)
256 2dnq_A RNA-binding protein 4B; 99.7 4.3E-17 1.5E-21 114.3 10.9 80 170-257 4-83 (90)
257 2kvi_A Nuclear polyadenylated 99.7 1.7E-17 5.9E-22 117.9 8.8 79 75-160 7-86 (96)
258 2cpd_A Apobec-1 stimulating pr 99.7 5.4E-17 1.8E-21 115.9 11.5 77 76-159 13-91 (99)
259 2dnn_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 120.4 8.9 81 171-254 13-93 (109)
260 2dha_A FLJ20171 protein; RRM d 99.7 7.3E-18 2.5E-22 124.9 7.0 80 75-155 20-103 (123)
261 2dnp_A RNA-binding protein 14; 99.7 2.2E-17 7.7E-22 115.8 9.2 78 75-159 6-83 (90)
262 2dgu_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 117.8 10.2 78 77-161 10-87 (103)
263 2jvr_A Nucleolar protein 3; RN 99.7 8.2E-18 2.8E-22 122.3 6.9 79 76-157 26-105 (111)
264 2dgu_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 116.9 11.1 84 170-261 7-90 (103)
265 1x4f_A Matrin 3; structural ge 99.7 2.4E-17 8.2E-22 119.6 9.0 81 171-257 22-105 (112)
266 1whx_A Hypothetical protein ri 99.7 1.8E-17 6.3E-22 120.9 8.4 76 77-157 9-84 (111)
267 1why_A Hypothetical protein ri 99.7 6.6E-17 2.2E-21 115.0 11.1 80 170-255 13-94 (97)
268 3egn_A RNA-binding protein 40; 99.7 1.1E-17 3.7E-22 127.8 7.5 88 171-258 42-134 (143)
269 1x4g_A Nucleolysin TIAR; struc 99.7 4.4E-17 1.5E-21 118.5 10.4 82 171-258 22-103 (109)
270 2cpj_A Non-POU domain-containi 99.7 5.4E-17 1.9E-21 115.9 10.5 82 170-257 11-92 (99)
271 2xnq_A Nuclear polyadenylated 99.7 7.3E-17 2.5E-21 114.8 11.0 80 168-255 16-96 (97)
272 2lcw_A RNA-binding protein FUS 99.6 6E-19 2.1E-23 129.9 0.0 86 75-160 4-98 (116)
273 1iqt_A AUF1, heterogeneous nuc 99.7 8E-18 2.7E-22 113.9 5.6 75 176-251 1-75 (75)
274 2hgn_A Heterogeneous nuclear r 99.7 6.1E-18 2.1E-22 128.0 5.5 81 76-158 44-124 (139)
275 2hgm_A HNRPF protein, heteroge 99.7 1.9E-17 6.5E-22 122.9 8.0 80 75-156 39-120 (126)
276 1x4c_A Splicing factor, argini 99.7 9.7E-17 3.3E-21 116.5 11.6 81 170-257 11-96 (108)
277 2krb_A Eukaryotic translation 99.7 9.9E-18 3.4E-22 115.2 5.9 73 174-248 1-80 (81)
278 2jvo_A Nucleolar protein 3; nu 99.7 5.2E-17 1.8E-21 117.9 10.0 81 169-257 26-106 (108)
279 2ytc_A PRE-mRNA-splicing facto 99.7 7.5E-17 2.6E-21 111.8 10.4 77 170-252 8-85 (85)
280 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-17 4.8E-22 120.7 6.9 84 170-255 7-93 (107)
281 2la4_A Nuclear and cytoplasmic 99.7 3.9E-17 1.3E-21 117.0 9.1 78 171-254 24-101 (101)
282 2xs2_A Deleted in azoospermia- 99.7 9.3E-18 3.2E-22 120.6 5.8 80 77-158 8-87 (102)
283 2dgt_A RNA-binding protein 30; 99.7 1.4E-16 4.8E-21 112.2 11.7 80 170-257 6-85 (92)
284 2hvz_A Splicing factor, argini 99.7 3.6E-17 1.2E-21 117.3 8.8 78 175-257 1-78 (101)
285 2dnp_A RNA-binding protein 14; 99.7 1E-16 3.4E-21 112.4 10.9 80 170-257 5-84 (90)
286 1wf1_A RNA-binding protein RAL 99.7 5.6E-17 1.9E-21 118.1 9.7 76 77-159 26-102 (110)
287 3q2s_C Cleavage and polyadenyl 99.7 2.5E-17 8.7E-22 135.4 8.7 83 173-255 67-151 (229)
288 2jvr_A Nucleolar protein 3; RN 99.7 4.4E-17 1.5E-21 118.5 9.0 79 173-255 27-106 (111)
289 1wf1_A RNA-binding protein RAL 99.7 8.8E-17 3E-21 117.1 10.5 78 171-256 24-102 (110)
290 2i2y_A Fusion protein consists 99.7 4.3E-17 1.5E-21 125.5 8.9 80 74-157 69-148 (150)
291 2g4b_A Splicing factor U2AF 65 99.7 4.3E-17 1.5E-21 127.9 9.0 110 44-154 55-171 (172)
292 1fjc_A Nucleolin RBD2, protein 99.7 4E-17 1.4E-21 115.9 8.0 82 170-256 12-93 (96)
293 2hgn_A Heterogeneous nuclear r 99.7 8.4E-18 2.9E-22 127.2 4.7 124 120-256 2-125 (139)
294 2f3j_A RNA and export factor b 99.7 4.2E-17 1.4E-21 128.8 8.8 83 75-157 85-167 (177)
295 2cqh_A IGF-II mRNA-binding pro 99.7 9.4E-17 3.2E-21 113.3 9.7 81 171-257 5-86 (93)
296 2e5g_A U6 snRNA-specific termi 99.7 1.7E-16 5.7E-21 112.2 11.0 76 77-158 7-83 (94)
297 3md3_A Nuclear and cytoplasmic 99.7 8.6E-17 2.9E-21 125.2 10.4 111 45-155 46-165 (166)
298 2cqh_A IGF-II mRNA-binding pro 99.7 3.1E-17 1.1E-21 115.8 7.2 78 76-159 6-85 (93)
299 2qfj_A FBP-interacting repress 99.7 1.1E-16 3.8E-21 130.2 11.5 116 45-160 75-208 (216)
300 2j8a_A Histone-lysine N-methyl 99.7 2.9E-17 1E-21 120.0 7.1 77 79-155 3-94 (136)
301 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-16 9.6E-21 112.2 12.1 80 169-256 10-91 (99)
302 1whx_A Hypothetical protein ri 99.7 5.5E-17 1.9E-21 118.3 8.6 78 173-256 9-86 (111)
303 2kvi_A Nuclear polyadenylated 99.7 8.6E-17 2.9E-21 114.2 9.2 81 170-258 6-87 (96)
304 2cq2_A Hypothetical protein LO 99.7 4.2E-17 1.4E-21 118.4 7.4 79 76-159 23-108 (114)
305 2lcw_A RNA-binding protein FUS 99.5 1.8E-18 6.2E-23 127.3 0.0 87 171-257 4-98 (116)
306 2hgm_A HNRPF protein, heteroge 99.7 2.7E-17 9.3E-22 122.1 6.3 82 170-254 38-121 (126)
307 2diu_A KIAA0430 protein; struc 99.7 1.8E-16 6.1E-21 109.6 9.9 78 172-259 6-89 (96)
308 2e44_A Insulin-like growth fac 99.7 1.9E-16 6.5E-21 112.3 10.4 82 170-255 11-93 (96)
309 1sjr_A Polypyrimidine tract-bi 99.7 2.2E-16 7.7E-21 121.6 11.3 83 172-258 44-128 (164)
310 2xs2_A Deleted in azoospermia- 99.7 3.3E-17 1.1E-21 117.6 6.3 84 172-258 7-90 (102)
311 1fxl_A Paraneoplastic encephal 99.7 2.5E-16 8.6E-21 122.7 11.8 83 174-256 2-84 (167)
312 4f02_A Polyadenylate-binding p 99.7 1.9E-16 6.5E-21 128.9 11.4 86 171-256 12-97 (213)
313 2e5i_A Heterogeneous nuclear r 99.7 5.2E-16 1.8E-20 114.7 12.6 80 174-259 25-107 (124)
314 2f3j_A RNA and export factor b 99.7 1.8E-16 6.2E-21 125.2 10.7 86 170-256 84-169 (177)
315 1b7f_A Protein (SXL-lethal pro 99.7 2E-16 6.8E-21 123.5 10.8 84 173-256 2-85 (168)
316 1x5p_A Negative elongation fac 99.7 3.3E-16 1.1E-20 111.4 10.7 77 76-159 13-89 (97)
317 3egn_A RNA-binding protein 40; 99.7 3.5E-17 1.2E-21 124.9 5.9 84 75-158 42-131 (143)
318 1wg1_A KIAA1579 protein, homol 99.7 9.3E-17 3.2E-21 112.1 7.5 74 77-156 4-77 (88)
319 2bz2_A Negative elongation fac 99.7 2.8E-16 9.5E-21 116.3 10.5 81 170-258 35-115 (121)
320 1wg1_A KIAA1579 protein, homol 99.7 1.9E-16 6.7E-21 110.5 9.0 76 173-255 4-79 (88)
321 2e44_A Insulin-like growth fac 99.7 1E-16 3.6E-21 113.7 7.7 78 77-157 14-92 (96)
322 2dha_A FLJ20171 protein; RRM d 99.7 5.4E-17 1.8E-21 120.2 6.3 82 172-255 21-106 (123)
323 3zzy_A Polypyrimidine tract-bi 99.7 4.7E-16 1.6E-20 115.5 11.4 85 172-261 26-113 (130)
324 2j8a_A Histone-lysine N-methyl 99.7 1.8E-16 6.1E-21 115.9 8.5 80 175-254 3-96 (136)
325 1sjr_A Polypyrimidine tract-bi 99.7 3.1E-16 1.1E-20 120.8 10.2 78 78-158 46-125 (164)
326 2yh0_A Splicing factor U2AF 65 99.7 2.2E-16 7.7E-21 126.6 9.8 83 76-158 112-195 (198)
327 2diu_A KIAA0430 protein; struc 99.7 5.6E-16 1.9E-20 107.1 10.0 74 78-160 8-87 (96)
328 3zzy_A Polypyrimidine tract-bi 99.7 5.2E-16 1.8E-20 115.2 10.6 77 78-158 28-107 (130)
329 2e5g_A U6 snRNA-specific termi 99.7 3.9E-16 1.3E-20 110.3 9.5 81 171-257 5-85 (94)
330 3nmr_A Cugbp ELAV-like family 99.7 3.2E-16 1.1E-20 123.1 9.9 79 77-155 94-175 (175)
331 1x5p_A Negative elongation fac 99.7 1E-15 3.5E-20 108.8 11.6 80 170-257 11-90 (97)
332 2e5i_A Heterogeneous nuclear r 99.7 8.5E-16 2.9E-20 113.6 11.3 75 79-158 26-103 (124)
333 2dnl_A Cytoplasmic polyadenyla 99.7 4.3E-16 1.5E-20 114.2 9.3 75 76-153 6-84 (114)
334 2pe8_A Splicing factor 45; RRM 99.7 6.4E-16 2.2E-20 111.3 9.7 82 75-156 5-93 (105)
335 2cq2_A Hypothetical protein LO 99.7 3.3E-16 1.1E-20 113.7 8.2 80 171-256 22-108 (114)
336 2cjk_A Nuclear polyadenylated 99.6 1.8E-16 6.1E-21 123.7 7.3 79 77-156 86-165 (167)
337 2voo_A Lupus LA protein; RNA-b 99.6 5.1E-16 1.8E-20 124.3 10.1 80 77-157 108-187 (193)
338 3d2w_A TAR DNA-binding protein 99.6 2.7E-16 9.2E-21 110.0 7.4 75 75-157 8-84 (89)
339 3beg_B Splicing factor, argini 99.6 3.1E-16 1.1E-20 115.1 7.6 74 77-156 15-93 (115)
340 1wf0_A TDP-43, TAR DNA-binding 99.6 3E-16 1E-20 109.5 6.7 77 77-159 4-80 (88)
341 2pe8_A Splicing factor 45; RRM 99.6 1.7E-15 5.9E-20 109.0 10.8 83 171-253 5-93 (105)
342 2hzc_A Splicing factor U2AF 65 99.6 4.2E-16 1.4E-20 108.4 7.2 71 77-153 5-86 (87)
343 3d2w_A TAR DNA-binding protein 99.6 8.6E-16 3E-20 107.4 8.6 78 170-256 7-86 (89)
344 1l3k_A Heterogeneous nuclear r 99.6 1.4E-15 4.6E-20 121.8 10.7 87 170-257 9-95 (196)
345 2bz2_A Negative elongation fac 99.6 1.3E-15 4.4E-20 112.7 8.9 77 76-159 37-113 (121)
346 2voo_A Lupus LA protein; RNA-b 99.6 1.3E-15 4.4E-20 122.0 9.4 125 128-256 63-189 (193)
347 2dnl_A Cytoplasmic polyadenyla 99.6 9.9E-16 3.4E-20 112.2 8.0 80 171-253 5-87 (114)
348 3beg_B Splicing factor, argini 99.6 1.5E-15 5E-20 111.5 8.4 77 172-255 14-95 (115)
349 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 121.9 9.8 78 173-255 3-81 (205)
350 3u1l_A PRE-mRNA-splicing facto 99.6 1.8E-15 6.3E-20 124.0 8.8 86 170-261 130-236 (240)
351 3sde_A Paraspeckle component 1 99.6 1.7E-15 5.6E-20 127.2 8.4 114 45-158 63-180 (261)
352 1fje_B Nucleolin RBD12, protei 99.6 2.4E-15 8.2E-20 118.3 8.6 107 45-156 59-173 (175)
353 2hzc_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 103.5 8.1 72 172-250 4-86 (87)
354 3u1l_A PRE-mRNA-splicing facto 99.6 3E-15 1E-19 122.8 8.1 80 75-159 131-231 (240)
355 2dit_A HIV TAT specific factor 99.6 2.5E-14 8.5E-19 104.4 12.0 85 170-258 11-106 (112)
356 2adc_A Polypyrimidine tract-bi 99.6 8.3E-15 2.8E-19 120.5 10.5 83 170-257 30-113 (229)
357 1wf0_A TDP-43, TAR DNA-binding 99.6 2.8E-15 9.5E-20 104.5 6.0 79 172-257 3-81 (88)
358 2dit_A HIV TAT specific factor 99.6 2.6E-14 8.9E-19 104.3 11.3 81 75-158 12-103 (112)
359 3pgw_A U1-A; protein-RNA compl 99.6 1.6E-14 5.4E-19 122.4 11.4 84 170-256 5-92 (282)
360 3v4m_A Splicing factor U2AF 65 99.5 2.9E-14 9.8E-19 102.6 9.2 82 172-253 3-96 (105)
361 3v4m_A Splicing factor U2AF 65 99.5 1.3E-14 4.6E-19 104.4 7.2 81 76-156 3-96 (105)
362 1jmt_A Splicing factor U2AF 35 99.5 2.5E-15 8.4E-20 108.1 3.0 72 83-154 20-103 (104)
363 1qm9_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 115.6 8.3 79 174-257 3-82 (198)
364 1jmt_A Splicing factor U2AF 35 99.5 1.5E-14 5.2E-19 103.9 4.7 72 179-251 20-103 (104)
365 3ue2_A Poly(U)-binding-splicin 99.5 7.7E-14 2.6E-18 102.4 8.2 81 76-156 18-108 (118)
366 3ue2_A Poly(U)-binding-splicin 99.5 1.1E-13 3.9E-18 101.4 9.1 81 173-253 19-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.1E-12 3.9E-17 93.1 11.5 66 88-159 27-92 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.5E-12 8.6E-17 91.3 11.2 66 184-256 27-92 (100)
369 3tht_A Alkylated DNA repair pr 99.4 7.4E-13 2.5E-17 114.2 7.6 110 75-197 15-131 (345)
370 3s6e_A RNA-binding protein 39; 99.4 2E-12 6.8E-17 94.1 8.4 77 76-155 5-91 (114)
371 3s6e_A RNA-binding protein 39; 99.4 4.5E-12 1.5E-16 92.2 9.6 78 172-253 5-92 (114)
372 3tht_A Alkylated DNA repair pr 99.3 3.5E-12 1.2E-16 110.0 8.6 78 169-252 13-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 7.4E-11 2.5E-15 80.8 9.1 75 171-254 4-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 2E-10 6.9E-15 83.7 7.2 83 168-256 12-98 (121)
375 1owx_A Lupus LA protein, SS-B, 99.1 6.2E-10 2.1E-14 81.1 8.8 73 77-154 17-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 3.4E-10 1.2E-14 77.5 6.7 72 77-156 6-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 6.7E-10 2.3E-14 76.4 6.7 75 170-253 11-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.9 1.9E-09 6.6E-14 87.8 8.3 68 186-253 141-212 (222)
379 3dxb_A Thioredoxin N-terminall 98.9 1.7E-09 5.9E-14 88.1 7.3 79 78-156 124-212 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.9 1.5E-09 5.2E-14 74.6 3.7 70 77-154 14-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.8 5.9E-08 2E-12 68.0 9.3 74 171-250 18-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 5.2E-07 1.8E-11 63.3 7.5 74 76-154 19-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 4.8E-05 1.6E-09 52.9 8.9 87 78-187 8-99 (104)
384 1uw4_A UPF3X; nonsense mediate 97.9 6.8E-05 2.3E-09 51.4 7.7 67 79-145 2-71 (91)
385 1whv_A Poly(A)-specific ribonu 97.8 7.1E-05 2.4E-09 51.4 7.3 55 78-140 16-70 (100)
386 1wey_A Calcipressin 1; structu 97.8 0.0001 3.5E-09 51.5 7.9 76 173-254 4-84 (104)
387 1wey_A Calcipressin 1; structu 97.6 0.00034 1.2E-08 48.8 7.8 74 78-156 5-83 (104)
388 3ctr_A Poly(A)-specific ribonu 97.5 0.00017 5.8E-09 49.7 5.1 54 79-140 7-60 (101)
389 1uw4_A UPF3X; nonsense mediate 97.3 0.0012 4E-08 45.2 7.7 69 175-243 2-72 (91)
390 2l08_A Regulator of nonsense t 97.2 0.0006 2.1E-08 47.0 5.2 68 78-145 9-79 (97)
391 1wwh_A Nucleoporin 35, nucleop 97.2 0.0018 6.2E-08 46.4 7.8 71 77-154 23-94 (119)
392 1whv_A Poly(A)-specific ribonu 97.2 0.0031 1.1E-07 43.3 8.5 56 173-237 15-70 (100)
393 2dhx_A Poly (ADP-ribose) polym 97.2 0.0064 2.2E-07 42.2 10.1 73 172-253 6-83 (104)
394 1wwh_A Nucleoporin 35, nucleop 97.1 0.0018 6.2E-08 46.4 7.6 77 171-255 21-98 (119)
395 3p3d_A Nucleoporin 53; structu 96.9 0.00083 2.8E-08 48.9 3.8 81 173-255 6-100 (132)
396 3ctr_A Poly(A)-specific ribonu 96.4 0.0045 1.5E-07 42.6 4.9 54 175-237 7-60 (101)
397 2l08_A Regulator of nonsense t 96.3 0.0031 1.1E-07 43.4 3.2 71 173-243 8-80 (97)
398 3p3d_A Nucleoporin 53; structu 96.2 0.0087 3E-07 43.5 5.5 76 78-155 7-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.7 0.0054 1.9E-07 54.6 3.0 60 73-137 48-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 94.4 0.037 1.3E-06 49.3 4.5 57 172-234 51-107 (464)
401 3d45_A Poly(A)-specific ribonu 91.5 0.42 1.4E-05 43.2 7.1 56 78-141 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 87.0 2.6 8.8E-05 38.1 8.7 55 174-237 440-494 (507)
403 4e8u_A Putative uncharacterize 57.1 22 0.00074 26.9 5.4 55 80-136 14-80 (172)
404 3j21_T 50S ribosomal protein L 54.1 34 0.0012 22.6 5.4 56 177-235 25-82 (86)
405 2g0c_A ATP-dependent RNA helic 47.5 50 0.0017 20.7 5.8 59 89-155 12-75 (76)
406 3j21_T 50S ribosomal protein L 46.9 48 0.0017 21.8 5.3 56 81-138 25-82 (86)
407 4e8u_A Putative uncharacterize 37.4 82 0.0028 23.7 5.9 55 176-233 14-80 (172)
408 4eyt_A Telomerase associated p 36.0 94 0.0032 20.6 8.2 73 173-253 11-90 (129)
409 4eyt_A Telomerase associated p 31.3 1.1E+02 0.0039 20.1 7.8 57 78-141 12-68 (129)
410 4a17_R RPL23A, 60S ribosomal p 30.5 73 0.0025 23.4 4.5 56 176-234 88-145 (150)
411 3u5e_X 60S ribosomal protein L 30.2 75 0.0026 23.1 4.5 56 176-234 80-137 (142)
412 3u5c_Y RP50, 40S ribosomal pro 29.9 1.2E+02 0.0042 21.8 5.5 47 185-232 34-85 (135)
413 3lpe_A Putative transcription 28.4 52 0.0018 21.8 3.2 33 105-141 40-72 (92)
414 2xzm_P RPS24E; ribosome, trans 26.6 52 0.0018 24.2 3.1 47 185-232 32-83 (149)
415 2v94_A RPS24, 30S ribosomal pr 26.4 1.3E+02 0.0044 20.7 5.0 47 88-135 37-89 (107)
416 3iz5_X 60S ribosomal protein L 26.3 71 0.0024 23.5 3.8 56 176-234 90-147 (152)
417 1xn9_A 30S ribosomal protein S 26.2 1.1E+02 0.0038 20.8 4.5 49 88-137 28-82 (101)
418 3ts2_A Protein LIN-28 homolog 26.2 15 0.00052 27.0 0.2 28 93-127 2-29 (148)
419 2g1d_A 30S ribosomal protein S 25.7 31 0.0011 23.4 1.7 46 185-231 30-80 (98)
420 1vq8_S 50S ribosomal protein L 25.5 1.2E+02 0.0041 19.9 4.5 53 177-232 24-78 (85)
421 1ywx_A 30S ribosomal protein S 24.2 1.3E+02 0.0044 20.5 4.6 46 88-134 28-79 (102)
422 4a17_R RPL23A, 60S ribosomal p 23.2 1.1E+02 0.0038 22.4 4.3 55 81-137 89-145 (150)
423 3u5e_X 60S ribosomal protein L 23.0 1.2E+02 0.0039 22.1 4.3 55 81-137 81-137 (142)
424 3h7h_B Transcription elongatio 22.1 68 0.0023 22.0 2.9 34 105-142 41-74 (106)
425 4fj3_P RAF proto-oncogene seri 20.8 63 0.0021 17.1 1.8 20 13-32 5-24 (36)
426 3mfb_A Uncharacterized protein 20.3 1.4E+02 0.0048 22.1 4.4 36 90-125 3-42 (157)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=242.37 Aligned_cols=166 Identities=30% Similarity=0.574 Sum_probs=155.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccC
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~ 158 (275)
++|||+|||.++++++|+++|+.||.|.+|+++.++++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999987543
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 044184 159 KPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238 (275)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 238 (275)
. ....+..+|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||
T Consensus 81 ~---------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 81 Q---------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp C---------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred C---------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 2 2345578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCeeEEEEEccc
Q 044184 239 KELMGRPLRLKFGQK 253 (275)
Q Consensus 239 ~~i~g~~l~v~~a~~ 253 (275)
..++|+.|.|.||+.
T Consensus 152 ~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 152 QDLNGRPLRINWAAK 166 (166)
T ss_dssp CEETTEECEEEESCC
T ss_pred CccCCcEEEEEecCC
Confidence 999999999999863
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.1e-38 Score=256.06 Aligned_cols=170 Identities=25% Similarity=0.410 Sum_probs=153.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.+.++|||+|||+++++++|+++|+.||.|.+|+|++|+ +|+++|||||+|.+.++|.+|+..+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999987
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
...... ......+|||+|||..+++++|+++|++||.|+.+.++.+. +.++|||||+|.+.++|.+|++
T Consensus 93 ~~~~~~---------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 93 QRDPSL---------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp CCCTHH---------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHH
T ss_pred cccccc---------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHH
Confidence 642211 12235689999999999999999999999999999999884 4479999999999999999999
Q ss_pred HhCCCccCCeeEEEEEcccCCc
Q 044184 235 SLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 235 ~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
.|||..|+|+.|.|.|++++.+
T Consensus 162 ~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 162 KMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHTTCEETTEECEEEECCCHHH
T ss_pred HhCCCEECCEEEEEEEcCCCcc
Confidence 9999999999999999987654
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.6e-36 Score=244.77 Aligned_cols=180 Identities=21% Similarity=0.395 Sum_probs=152.4
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 33457899999999999999999999999999999999998 899999999999999999999985 8999999999999
Q ss_pred ehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 044184 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (275)
++........ .......++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|
T Consensus 88 ~~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 88 RAVSREDSQR-----PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECCC----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cccCcccccc-----cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 9875433221 12234568999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhCCCccCCeeEEEEEcccCCccccc
Q 044184 233 ISSLDGKELMGRPLRLKFGQKNDDVSES 260 (275)
Q Consensus 233 ~~~l~g~~i~g~~l~v~~a~~~~~~~~~ 260 (275)
+.. +|..+.|+.|.|.|+.++.+....
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HHC-SCCEETTEECEEEECC--------
T ss_pred HHh-CCcEECCEEEEEEecCChhHhccc
Confidence 995 899999999999999998876543
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.2e-36 Score=235.89 Aligned_cols=163 Identities=28% Similarity=0.522 Sum_probs=152.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
+++|||+|||+++++++|+++|+.||.|.+|++++++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 6899999999999999999999999999999999999 999999999999999999999999999999999999999875
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 044184 157 FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL 236 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 236 (275)
.. ......+|||+|||..+++++|+++|++||.+..+.++.+..+|.++|||||+|.+.++|.+|++.|
T Consensus 82 ~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 82 SS-----------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp CC-----------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred Cc-----------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 32 2334678999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCccCCee--EEEEEc
Q 044184 237 DGKELMGRP--LRLKFG 251 (275)
Q Consensus 237 ~g~~i~g~~--l~v~~a 251 (275)
||..+.|+. |.|.||
T Consensus 151 ~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 151 NGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCccCCCccceEEEeC
Confidence 999999965 888886
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.5e-36 Score=237.65 Aligned_cols=164 Identities=26% Similarity=0.423 Sum_probs=153.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
+.++|||+|||.++++++|+++|+.||.|.+|++++++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
+... ....++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.
T Consensus 82 ~~~~-----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 82 PGGE-----------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp CCSS-----------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcc-----------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 5332 34568999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCccCC--eeEEEEEc
Q 044184 236 LDGKELMG--RPLRLKFG 251 (275)
Q Consensus 236 l~g~~i~g--~~l~v~~a 251 (275)
|||..+.| ++|.|.||
T Consensus 151 l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCEecCCCeEEEEEeC
Confidence 99999987 99999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.1e-37 Score=250.86 Aligned_cols=182 Identities=23% Similarity=0.394 Sum_probs=157.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||.++++++|+++|+.||.|.+|++++++ +|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999876
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
....................++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 54321100000000123456899999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCCccCCeeEEEEEcccCCcc
Q 044184 235 SLDGKELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 235 ~l~g~~i~g~~l~v~~a~~~~~~ 257 (275)
.|||..|+|+.|.|.|+.++...
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSST
T ss_pred HccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999987543
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.1e-36 Score=236.96 Aligned_cols=165 Identities=21% Similarity=0.464 Sum_probs=151.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
++++|||+|||.++++++|+++|+.||.|.+|++++++ +|.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46899999999999999999999999999999999997 899999999999999999999984 667899999998875
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
+.. ......+|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++
T Consensus 80 ~~~-----------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~- 147 (167)
T 2cjk_A 80 PRD-----------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 147 (167)
T ss_dssp CHH-----------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-
T ss_pred chh-----------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-
Confidence 422 12346789999999999999999999999999999999998899999999999999999999998
Q ss_pred hCCCccCCeeEEEEEcccCC
Q 044184 236 LDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 236 l~g~~i~g~~l~v~~a~~~~ 255 (275)
++|..++|+.|.|.|+.++.
T Consensus 148 ~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 148 NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp CSEECSSSSCEEEEECCCCC
T ss_pred CCCEEeCCeEEEEeecCCCC
Confidence 89999999999999998763
No 8
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9e-35 Score=247.95 Aligned_cols=206 Identities=19% Similarity=0.258 Sum_probs=182.5
Q ss_pred ccccCCcchhhhhccccccccccCCcchhcccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceE
Q 044184 44 SYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFA 122 (275)
Q Consensus 44 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~a 122 (275)
.-.|.+.+.+..+...++.....+.+.........++|||+|||..+++++|+++|+.||.|.++.++.+. +|.++|||
T Consensus 61 fV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~a 140 (284)
T 3smz_A 61 FVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG 140 (284)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEE
Confidence 45577777777777777766666666666666778999999999999999999999999999999999998 99999999
Q ss_pred EEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCC-CHhHHHHHHhhcCCc
Q 044184 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKV-RSTHLREFFSANFNP 201 (275)
Q Consensus 123 fV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~v 201 (275)
||+|.+.++|.+|+..|+|..+.|+.|.|.++...... ......++|||+|||..+ ++++|+++|++||.|
T Consensus 141 fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~--------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i 212 (284)
T 3smz_A 141 FAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT--------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP 212 (284)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC--------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCC
T ss_pred EEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC--------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCe
Confidence 99999999999999999999999999999999765432 123557899999999996 999999999999999
Q ss_pred eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCccc
Q 044184 202 VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 202 ~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 258 (275)
..+.++.+. +|.++|+|||+|.+.++|.+|+..|||..++|+.|.|.|+.++....
T Consensus 213 ~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 213 TFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp SEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred EEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 999988875 78999999999999999999999999999999999999999887643
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.8e-34 Score=228.29 Aligned_cols=165 Identities=24% Similarity=0.410 Sum_probs=147.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CC--CCcceEEEEEcCHHHHHHHHHhcCccccc---cceee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GG--KNRNFAFVTMASPEEAQAAVNQFDTQEVS---GRIIR 150 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i~ 150 (275)
+.++|||+|||+++++++|+++|+.||.|.+|++++++ +| .++|||||+|.+.++|.+|+..|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36899999999999999999999999999999999999 44 89999999999999999999999998765 67788
Q ss_pred eeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHH
Q 044184 151 VEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAE 230 (275)
Q Consensus 151 v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (275)
+.++..... .....++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.
T Consensus 82 ~~~~~~~~~----------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~ 150 (175)
T 3nmr_A 82 MKPADSEKN----------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQ 150 (175)
T ss_dssp EEECGGGCC----------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHH
T ss_pred Ecccccccc----------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHH
Confidence 877765432 23356799999999999999999999999999999998884 6889999999999999999
Q ss_pred HHHHHhCCCccC---CeeEEEEEcc
Q 044184 231 AAISSLDGKELM---GRPLRLKFGQ 252 (275)
Q Consensus 231 ~a~~~l~g~~i~---g~~l~v~~a~ 252 (275)
+|++.|||..+. |++|.|.||.
T Consensus 151 ~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 151 TAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999998776 4999999984
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=5.4e-34 Score=225.21 Aligned_cols=159 Identities=25% Similarity=0.452 Sum_probs=144.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPC----G-------TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
+.++|||+|||+++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .++|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 6 67777764 45799999999999999999 79999999
Q ss_pred cceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCC
Q 044184 146 GRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT 225 (275)
Q Consensus 146 g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~ 225 (275)
|+.|.|.++..... ....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+
T Consensus 77 g~~i~v~~~~~~~~-----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP-----------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp TEECEEECCSSCCC-----------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CceeeecCCcccCC-----------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 99999998764322 2337899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 226 KEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 226 ~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
.++|.+|++.|||..++|+.|.|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999973
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=8.1e-34 Score=229.20 Aligned_cols=174 Identities=23% Similarity=0.430 Sum_probs=150.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPC----G-------TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
.+++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|.+.++|.+|+ .|+|..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 36899999999999999999999999 4 5555555 457899999999999999999 79999999
Q ss_pred cceeeeeehhccCCCCCCCC---------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcc
Q 044184 146 GRIIRVEFAKKFKKPRPQRS---------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA 216 (275)
Q Consensus 146 g~~i~v~~a~~~~~~~~~~~---------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~ 216 (275)
|+.|.|.++........... .........++|||+|||..+++++|+++|++||.|..+.++.+..+|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 99999999876532221110 111223567999999999999999999999999999999999998899999
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 217 GYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 217 g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
|||||+|.+.++|.+|++.|||..++|+.|.|.|++++..
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999999999999988764
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=8.4e-34 Score=242.88 Aligned_cols=205 Identities=17% Similarity=0.273 Sum_probs=164.1
Q ss_pred ccccCCcchhhhhccccccccccCCcchhcccCCCCeEEEcCCCCCCCHHHHHHhhccCC-ceeEEEEEeCCCCCCcceE
Q 044184 44 SYNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCG-TVVDVEIIKHKGGKNRNFA 122 (275)
Q Consensus 44 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~g~a 122 (275)
.-.|.+.+.+..+.. ++.....+.+.... ....++|||+|||..+++++|+++|+.|| .|..|.++.+..|.++|||
T Consensus 85 fV~f~~~~~A~~A~~-~~~~~~~g~~i~v~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~a 162 (292)
T 2ghp_A 85 RIEFARYDGALAAIT-KTHKVVGQNEIIVS-HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFA 162 (292)
T ss_dssp EEEESSHHHHHHHHT-TTTCEETTEECEEE-ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEE
T ss_pred EEEECCHHHHHHHHH-hCCcEeCCcEEEEE-ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEE
Confidence 344677777777763 54444444333322 23579999999999999999999999999 9999999999888899999
Q ss_pred EEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCC-CCHhHHHHHHhhcCCc
Q 044184 123 FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK-VRSTHLREFFSANFNP 201 (275)
Q Consensus 123 fV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v 201 (275)
||+|.+.++|.+|+..|+|..+.|+.|.|.++.+....... .......++|||+|||.. +++++|+++|++||.|
T Consensus 163 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~----~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v 238 (292)
T 2ghp_A 163 YIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT----DSATLEGREIMIRNLSTELLDENLLRESFEGFGSI 238 (292)
T ss_dssp EEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCE
T ss_pred EEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----cccCCCCceEEEECCCcccCCHHHHHHHHhccCCe
Confidence 99999999999999999999999999999998765432211 123556789999999999 9999999999999999
Q ss_pred eeEEEeeeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCC
Q 044184 202 VSSKVVFESN-EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 202 ~~~~i~~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~ 255 (275)
..+.++.+.. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|++++.
T Consensus 239 ~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 239 EKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp EEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred eEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999988765 5899999999999999999999 999999999999999999863
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.7e-34 Score=228.82 Aligned_cols=166 Identities=25% Similarity=0.399 Sum_probs=145.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++|||+|||.++++++|+++|..||.+..+.+....+|.++|||||+|.+.++|.+|++ |+|..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 4456799999999999999999999999998766433333488999999999999999999995 999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 044184 154 AKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAI 233 (275)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 233 (275)
+..... ......++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+
T Consensus 88 ~~~~~~---------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 88 PKGRDS---------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp CCCSSC---------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred CCCccc---------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 875432 223457899999999999999999999997755443 577899999999999999999999
Q ss_pred HHhCCCccCCeeEEEEEcccC
Q 044184 234 SSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 234 ~~l~g~~i~g~~l~v~~a~~~ 254 (275)
+.|||..++|+.|.|.|++++
T Consensus 154 ~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHTEEEETTEEEEEEECSSC
T ss_pred HHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999876
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3.5e-33 Score=226.82 Aligned_cols=169 Identities=19% Similarity=0.213 Sum_probs=141.8
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLP-WSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
+.++|||+||| ..+++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|..|++.|||..+.|+.|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 89999999999999999999999865 47999999999999999999999999999999999987
Q ss_pred ccCCCCCC-----CC-----------C----------CCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEe
Q 044184 156 KFKKPRPQ-----RS-----------A----------SAPARETQHKLYVSNLSWKVRSTHLREFFSANFNP--VSSKVV 207 (275)
Q Consensus 156 ~~~~~~~~-----~~-----------~----------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~ 207 (275)
........ .. . ......+..+|||+|||..+++++|+++|++||.| ..++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 54321000 00 0 00112456789999999999999999999999998 788877
Q ss_pred eeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe----eEEEEEc
Q 044184 208 FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR----PLRLKFG 251 (275)
Q Consensus 208 ~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~----~l~v~~a 251 (275)
.+. +.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|+|+
T Consensus 159 ~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 663 55679999999999999999999999999986 5666664
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=8.4e-33 Score=235.52 Aligned_cols=172 Identities=20% Similarity=0.304 Sum_probs=147.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHH----HhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccccccee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIK----NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII 149 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 149 (275)
...+.++|||+|||.++++++|+ ++|+.||.|.+|++++ +|+++|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 34557999999999999999976 8999999999999876 77899999999999999999999999999999999
Q ss_pred eeeehhccCCCCCCCC----------------------------------------------------------------
Q 044184 150 RVEFAKKFKKPRPQRS---------------------------------------------------------------- 165 (275)
Q Consensus 150 ~v~~a~~~~~~~~~~~---------------------------------------------------------------- 165 (275)
.|.|+...........
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 9999865432000000
Q ss_pred ------------------------------------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeee
Q 044184 166 ------------------------------------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE 209 (275)
Q Consensus 166 ------------------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~ 209 (275)
.......+.++|||+|||..+++++|+++|++||.|..+.++.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 00012335688999999999999999999999999999998854
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEEEcc
Q 044184 210 SNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-GRPLRLKFGQ 252 (275)
Q Consensus 210 ~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~-g~~l~v~~a~ 252 (275)
. +|||||+|.+.++|.+|++.|||..+. |+.|.|.|++
T Consensus 243 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 2 689999999999999999999999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.2e-32 Score=227.73 Aligned_cols=172 Identities=24% Similarity=0.285 Sum_probs=147.8
Q ss_pred ccCCCCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
...+.++|||+|||. .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999999999 99999999999999999999998875 7899999999999999999999999999999999
Q ss_pred ehhccCCCCCCCC------------------------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcC-CceeEEEe
Q 044184 153 FAKKFKKPRPQRS------------------------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANF-NPVSSKVV 207 (275)
Q Consensus 153 ~a~~~~~~~~~~~------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~i~ 207 (275)
++........... .......+.++|||+|||..+++++|+++|++|| .|..+.++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 9875422111100 0011234578999999999999999999999998 88888886
Q ss_pred eeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEEEcccC
Q 044184 208 FESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM-GRPLRLKFGQKN 254 (275)
Q Consensus 208 ~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~-g~~l~v~~a~~~ 254 (275)
.+ .+|||||+|.+.++|.+|++.|||..+. |+.|.|.|++++
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 53 3789999999999999999999999999 999999999874
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=9.1e-33 Score=223.31 Aligned_cols=168 Identities=24% Similarity=0.304 Sum_probs=145.8
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
+++|||+|||+ .+++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 58999999999 99999999999999999999998765 78999999999999999999999999999999999875
Q ss_pred cCCCCCCCC------------------------CCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcC-CceeEEEeeeCC
Q 044184 157 FKKPRPQRS------------------------ASAPARETQHKLYVSNLSWKVRSTHLREFFSANF-NPVSSKVVFESN 211 (275)
Q Consensus 157 ~~~~~~~~~------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~i~~~~~ 211 (275)
.....+... .......+.++|||+|||..+++++|+++|++|| .|..+.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 432111100 0011234588999999999999999999999999 8888888754
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEEEcccC
Q 044184 212 EGRSAGYGFVSFATKEEAEAAISSLDGKELM-GRPLRLKFGQKN 254 (275)
Q Consensus 212 ~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~-g~~l~v~~a~~~ 254 (275)
.+|+|||+|.+.++|.+|++.|||..++ |+.|.|.|++++
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999999864
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8e-32 Score=229.71 Aligned_cols=158 Identities=27% Similarity=0.384 Sum_probs=148.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..+++|||+|||..+++++|+++|+.|| |.+|.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999 999988 5678999999999999999999999999999999999754
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
..++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..
T Consensus 94 -----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 -----------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp -----------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred -----------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 247999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCccCCeeEEEEEcccCCc
Q 044184 236 LDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 236 l~g~~i~g~~l~v~~a~~~~~ 256 (275)
|+|..+.|+.|.|.|+.++..
T Consensus 157 l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HTTCEETTEECEEEECCGGGC
T ss_pred hCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999987654
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=1e-31 Score=226.43 Aligned_cols=159 Identities=31% Similarity=0.421 Sum_probs=145.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||+++|+++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34568999999999999999999999999999999954 4799999999999999999999999999999999998
Q ss_pred hccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 155 KKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
.+ ..+|||+|||..+++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|+.
T Consensus 94 ~~-----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 94 TH-----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp CC-----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred cc-----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH
Confidence 63 568999999999999999999999999999999999 689999999999999999999999
Q ss_pred HhCC-CccC---CeeEEEEEcccCCc
Q 044184 235 SLDG-KELM---GRPLRLKFGQKNDD 256 (275)
Q Consensus 235 ~l~g-~~i~---g~~l~v~~a~~~~~ 256 (275)
.||+ ..+. |+.|.|.++....+
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HhcCCeEEecCCCceEEEeeccccCc
Confidence 9954 4444 99999999987654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=9.2e-32 Score=230.20 Aligned_cols=164 Identities=20% Similarity=0.300 Sum_probs=141.2
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
......++|||+|||..+++++|+++|+.||.|.+|+|+++..+ ++|||||+|.+.++|.+|+. ++|..+.|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 45566899999999999999999999999999999999998855 47999999999999999995 89999999999999
Q ss_pred ehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcC-CceeEEEeeeCCCCCcccEEEEEeCCHHHHHH
Q 044184 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEA 231 (275)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (275)
++. .++|||+|||..+++++|+++|++|| .|..+.++.+.. |.++|||||+|.+.++|.+
T Consensus 114 ~~~------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 114 HLT------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp ECC------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHH
T ss_pred ECC------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHH
Confidence 863 68999999999999999999999999 999999988754 7889999999999999999
Q ss_pred HHHHhCCCccCCeeEEEEEcccCCcc
Q 044184 232 AISSLDGKELMGRPLRLKFGQKNDDV 257 (275)
Q Consensus 232 a~~~l~g~~i~g~~l~v~~a~~~~~~ 257 (275)
|+..|||..+.|+.|.|.|+.++...
T Consensus 175 A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99999999999999999999876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.2e-24 Score=169.41 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=117.5
Q ss_pred EEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc--CCCCCCCCCCCCCCCCCcEEEEecCCC
Q 044184 107 DVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF--KKPRPQRSASAPARETQHKLYVSNLSW 184 (275)
Q Consensus 107 ~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~--~~~~~~~~~~~~~~~~~~~l~v~nl~~ 184 (275)
+++|+.+.. .++|||||+|.+.++|++|+..+++....+..+.+...... .................++|||+|||.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 456666664 58999999999999999999888764432222222211110 000111112223345678999999999
Q ss_pred CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCccc
Q 044184 185 KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 258 (275)
.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|++++....
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 99999999999999999999999998899999999999999999999999999999999999999999876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=8.5e-24 Score=155.82 Aligned_cols=108 Identities=15% Similarity=0.288 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
..+|||+|||+++++++|+++|+.||.|.+|+|+++.. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 57899999999999999999999999999999999874 47999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEecCCCCCCHh
Q 044184 158 KKPRPQRSASAPARETQHKLYVSNLSWKVRST 189 (275)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 189 (275)
...... ........++|||+|||..+|++
T Consensus 84 ~~~~~~---~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KEREAE---LGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC------------------------------
T ss_pred cccccc---cccccCCCCceEeCCCCCCcccc
Confidence 332221 12233445689999999999876
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=3.5e-23 Score=159.77 Aligned_cols=134 Identities=21% Similarity=0.250 Sum_probs=115.0
Q ss_pred CCCcceEEEEEcCHHHHHHHHHhc-CccccccceeeeeehhccCCC-----CCCCCCCCCCCCCCcEEEEecCCCCCCHh
Q 044184 116 GKNRNFAFVTMASPEEAQAAVNQF-DTQEVSGRIIRVEFAKKFKKP-----RPQRSASAPARETQHKLYVSNLSWKVRST 189 (275)
Q Consensus 116 ~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~v~~a~~~~~~-----~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 189 (275)
...+|+++|+|.+.++|++|+..+ +|..++| .+.+.++...... ..............++|||+|||..++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 356899999999999999999999 9999999 9999988653211 11112233455678999999999999999
Q ss_pred HHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCC
Q 044184 190 HLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 255 (275)
Q Consensus 190 ~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~ 255 (275)
+|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.|++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999865 68999999999999999999999999999999999998764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=142.44 Aligned_cols=80 Identities=25% Similarity=0.515 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||+++|+++|+++|+.||.|.+|++++|+ +|.++|||||+|.+.++|.+|+..|||..+.|+.|.|+|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=139.59 Aligned_cols=82 Identities=29% Similarity=0.499 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 044184 252 QK 253 (275)
Q Consensus 252 ~~ 253 (275)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=135.64 Aligned_cols=84 Identities=12% Similarity=0.311 Sum_probs=77.3
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcC-CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCccCCeeEEEEEc
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD-GKELMGRPLRLKFG 251 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-g~~i~g~~l~v~~a 251 (275)
+++|||+|||..+++++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|.+|++.++ +..++|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 68999999999999999999999999999999999874 56799999999999
Q ss_pred ccCCcc
Q 044184 252 QKNDDV 257 (275)
Q Consensus 252 ~~~~~~ 257 (275)
.++.+.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 886644
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=4.9e-21 Score=144.91 Aligned_cols=127 Identities=21% Similarity=0.308 Sum_probs=84.3
Q ss_pred ceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcC
Q 044184 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199 (275)
Q Consensus 120 g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 199 (275)
.+.|++|.+...+..|+..++|....|+.- ..+ ..........++|||+|||..+++++|+++|++||
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-----------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 72 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-----------GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG 72 (135)
T ss_dssp -------------------------------CCS-----------CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-----------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 378889999999999999988876555431 111 11223445678999999999999999999999999
Q ss_pred CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCccc
Q 044184 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 200 ~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 258 (275)
.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|++++....
T Consensus 73 ~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 73 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999999998899999999999999999999999999999999999999999876543
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=137.01 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCC-ceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhc-Cccccccceeeeeeh
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCG-TVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQF-DTQEVSGRIIRVEFA 154 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~v~~a 154 (275)
+++|||+|||+++|+++|+++|+.|| .|.+|+|++|+ +|.++|||||+|.+.++|.+|++.+ ++..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 79999999998 8999999999999999999999877 456799999999999
Q ss_pred hccCC
Q 044184 155 KKFKK 159 (275)
Q Consensus 155 ~~~~~ 159 (275)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=137.04 Aligned_cols=80 Identities=24% Similarity=0.283 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
+.++|||+|||+++++++|+++|++||.|.+|+|++|+ +|+++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999999 89999999999999999999999999999999999999986
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
.
T Consensus 85 ~ 85 (110)
T 3s8s_A 85 K 85 (110)
T ss_dssp T
T ss_pred C
Confidence 3
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=136.52 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=80.5
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
.+.++|||+|||..+++++|+++|++||.|.++.++.|+.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 044184 252 QKNDD 256 (275)
Q Consensus 252 ~~~~~ 256 (275)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=5.5e-21 Score=135.43 Aligned_cols=82 Identities=27% Similarity=0.447 Sum_probs=75.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCc--eeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccc----cccc
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGT--VVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQE----VSGR 147 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~----~~g~ 147 (275)
.....+|||+|||+.+|+++|+++|++||. +.+|++++|+ +|+++|||||+|.+.++|.+|++.|||.. ++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344689999999999999999999999995 6799999998 89999999999999999999999999974 8999
Q ss_pred eeeeeehhc
Q 044184 148 IIRVEFAKK 156 (275)
Q Consensus 148 ~i~v~~a~~ 156 (275)
+|.|+|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 32
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.2e-19 Score=131.29 Aligned_cols=85 Identities=28% Similarity=0.409 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccccc---ceeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG---RIIRVE 152 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~i~v~ 152 (275)
...++|||+|||..+++++|+++|+.||.|.+|.|+.+++|.++|||||+|.+.++|.+|+..|+|..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred ehhccCCC
Q 044184 153 FAKKFKKP 160 (275)
Q Consensus 153 ~a~~~~~~ 160 (275)
++......
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99876544
No 33
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=5.9e-20 Score=143.84 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=81.9
Q ss_pred EEEcCHHHHHHHHHhcCccccc--cceeeeeehhccCCCC--------CC-CCCCCCCCCCCcEEEEecCCCCCCHhHHH
Q 044184 124 VTMASPEEAQAAVNQFDTQEVS--GRIIRVEFAKKFKKPR--------PQ-RSASAPARETQHKLYVSNLSWKVRSTHLR 192 (275)
Q Consensus 124 V~f~~~~~A~~a~~~l~~~~~~--g~~i~v~~a~~~~~~~--------~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 192 (275)
.+|.+.++|..++..+++.... |+.+.+.+........ .. .........+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7889999999999988887654 6666666543221100 00 11223345567899999999999999999
Q ss_pred HHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCccc
Q 044184 193 EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 193 ~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 258 (275)
++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999877544
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=131.38 Aligned_cols=83 Identities=11% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCC--ceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----ccCCe
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFN--PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK----ELMGR 244 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~i~g~ 244 (275)
...-.+|||+|||+.+++++|+++|++||. +.++++++|+.+|.++|||||+|.+.++|.+|++.|||. .|.||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445679999999999999999999999885 578999999999999999999999999999999999997 48999
Q ss_pred eEEEEEccc
Q 044184 245 PLRLKFGQK 253 (275)
Q Consensus 245 ~l~v~~a~~ 253 (275)
.|.|.||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=128.58 Aligned_cols=84 Identities=24% Similarity=0.471 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
+.++|||+|||..+++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred ccCCC
Q 044184 156 KFKKP 160 (275)
Q Consensus 156 ~~~~~ 160 (275)
+....
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 65543
No 36
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-20 Score=131.43 Aligned_cols=87 Identities=24% Similarity=0.402 Sum_probs=80.7
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34457999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ehhccCCC
Q 044184 153 FAKKFKKP 160 (275)
Q Consensus 153 ~a~~~~~~ 160 (275)
++.+....
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99875543
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.7e-20 Score=130.55 Aligned_cols=85 Identities=28% Similarity=0.405 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||..+++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
......
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876544
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=130.15 Aligned_cols=84 Identities=25% Similarity=0.465 Sum_probs=78.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||..+++++|+++|+.||.|.+|+++.+++|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC
Q 044184 155 KKFK 158 (275)
Q Consensus 155 ~~~~ 158 (275)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7643
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=133.86 Aligned_cols=87 Identities=29% Similarity=0.465 Sum_probs=80.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||.++++++|+++|+.||.|.+|.|+.+.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCC
Q 044184 155 KKFKKPR 161 (275)
Q Consensus 155 ~~~~~~~ 161 (275)
.......
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8665443
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=8.3e-20 Score=126.25 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=75.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
.+|||+|||.++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999997 8999999999999999999999999999999999999999753
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=128.27 Aligned_cols=80 Identities=29% Similarity=0.494 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
+.++|||+|||.++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46899999999999999999999999999999999997 99999999999999999999999999999999999999987
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.4e-19 Score=125.16 Aligned_cols=81 Identities=36% Similarity=0.683 Sum_probs=78.2
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~ 254 (275)
.+|||+|||..+++++|+++|++||.+..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999899999999999999999999999999999999999999999987
Q ss_pred C
Q 044184 255 D 255 (275)
Q Consensus 255 ~ 255 (275)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 43
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=133.37 Aligned_cols=100 Identities=26% Similarity=0.379 Sum_probs=85.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccC
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFK 158 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~ 158 (275)
++|||+|||.++++++|+++|+.||.|.+|.++.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999887 78999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCC
Q 044184 159 KPRPQRSASAPARETQHKLYVSNLS 183 (275)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~v~nl~ 183 (275)
...... ..........+|||+||+
T Consensus 77 ~~~~~~-~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFD-RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCC-SCCCSCCCCSCCCSCCCC
T ss_pred CcccCC-CCCccccCCCceecCCCC
Confidence 433222 222233457789999987
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=2.1e-19 Score=132.13 Aligned_cols=86 Identities=27% Similarity=0.458 Sum_probs=80.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+......
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=130.15 Aligned_cols=86 Identities=28% Similarity=0.511 Sum_probs=79.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||+.+++++|+++|+.||.|..|.++.+ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345789999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hccCCCC
Q 044184 155 KKFKKPR 161 (275)
Q Consensus 155 ~~~~~~~ 161 (275)
.+.....
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8765443
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=129.32 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=78.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||.++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+. |++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999998 999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+.+....
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9865443
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2e-20 Score=131.52 Aligned_cols=81 Identities=19% Similarity=0.420 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCC--ceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCG--TVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
.+|||+|||.++++++|+++|+.|| .|.+|+++.++ +|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998 99999999999999999999999999999999999999998
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=130.54 Aligned_cols=87 Identities=29% Similarity=0.415 Sum_probs=80.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||..+++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 33457899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ehhccCCC
Q 044184 153 FAKKFKKP 160 (275)
Q Consensus 153 ~a~~~~~~ 160 (275)
++......
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99875543
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=132.10 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=78.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred hhccC
Q 044184 154 AKKFK 158 (275)
Q Consensus 154 a~~~~ 158 (275)
+.+..
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98643
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.2e-19 Score=133.39 Aligned_cols=85 Identities=22% Similarity=0.483 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
.+....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 875543
No 51
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=126.26 Aligned_cols=83 Identities=30% Similarity=0.500 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccC
Q 044184 252 QKN 254 (275)
Q Consensus 252 ~~~ 254 (275)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=131.63 Aligned_cols=86 Identities=30% Similarity=0.375 Sum_probs=80.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9865443
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=129.98 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEE-EEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDV-EIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
+.++|||+|||..+++++|+++|+.||.|.+| +|+.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 999996 9999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
.+....
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 875544
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=6.2e-20 Score=127.47 Aligned_cols=80 Identities=35% Similarity=0.532 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.+.++|||+|||..+++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999996 8999999999999999999999999999999999999987
Q ss_pred h
Q 044184 155 K 155 (275)
Q Consensus 155 ~ 155 (275)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=8.6e-20 Score=129.83 Aligned_cols=82 Identities=17% Similarity=0.451 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
++++|||+|||..+++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 56
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=127.32 Aligned_cols=88 Identities=20% Similarity=0.488 Sum_probs=82.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++ |||..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999 99999999999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|+.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999876543
No 57
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=131.02 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||+++|+++|+++|+.||.|.+|.|++++.|.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34689999999999999999999999999999999999999999999999999999999999 89999999999999886
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=128.19 Aligned_cols=88 Identities=26% Similarity=0.369 Sum_probs=82.7
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCccc
Q 044184 251 GQKNDDVS 258 (275)
Q Consensus 251 a~~~~~~~ 258 (275)
++++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99987653
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=2e-19 Score=127.93 Aligned_cols=86 Identities=22% Similarity=0.448 Sum_probs=81.3
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
+.++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36799999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cCCccc
Q 044184 253 KNDDVS 258 (275)
Q Consensus 253 ~~~~~~ 258 (275)
++....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 987553
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=2.1e-19 Score=124.82 Aligned_cols=82 Identities=27% Similarity=0.461 Sum_probs=78.4
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cc
Q 044184 251 GQ 252 (275)
Q Consensus 251 a~ 252 (275)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 61
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=6e-19 Score=129.68 Aligned_cols=92 Identities=28% Similarity=0.470 Sum_probs=84.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCccccc
Q 044184 249 KFGQKNDDVSES 260 (275)
Q Consensus 249 ~~a~~~~~~~~~ 260 (275)
.|++++....+.
T Consensus 90 ~~a~~~~~~~~~ 101 (115)
T 2dgo_A 90 NWATRKPPAPKS 101 (115)
T ss_dssp EESSCCCCCSCC
T ss_pred EEccCCCCCCcc
Confidence 999988765433
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=129.85 Aligned_cols=87 Identities=28% Similarity=0.483 Sum_probs=80.3
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeC-C-CCCCcceEEEEEcCHHHHHHHHHhc-Cccccccceee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-K-GGKNRNFAFVTMASPEEAQAAVNQF-DTQEVSGRIIR 150 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~-~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~ 150 (275)
.....++|||+|||..+++++|+++|+.||.|..|+|+.+ + ++.++|||||+|.+.++|.+|+..| ++..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445799999999999999999999999999999999999 4 8999999999999999999999999 99999999999
Q ss_pred eeehhccCCC
Q 044184 151 VEFAKKFKKP 160 (275)
Q Consensus 151 v~~a~~~~~~ 160 (275)
|.++.+....
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999875543
No 63
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.9e-19 Score=132.36 Aligned_cols=83 Identities=33% Similarity=0.438 Sum_probs=75.8
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
..+|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999884 44799999999999999999999999999999999999988
Q ss_pred CCccc
Q 044184 254 NDDVS 258 (275)
Q Consensus 254 ~~~~~ 258 (275)
+.+..
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 64
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=130.74 Aligned_cols=86 Identities=33% Similarity=0.500 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 346899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred hccCCCC
Q 044184 155 KKFKKPR 161 (275)
Q Consensus 155 ~~~~~~~ 161 (275)
.+.....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8755443
No 65
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=6.1e-20 Score=135.05 Aligned_cols=104 Identities=20% Similarity=0.321 Sum_probs=92.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||..+++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34689999999999999999999999999999999875 4568999999999999999999999999999999999997
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCC
Q 044184 156 KFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFN 200 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 200 (275)
+.... .+++...++++|.++|++||.
T Consensus 84 ~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 64332 456778889999999999764
No 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=129.04 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=76.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeE--------EEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCcccc
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD--------VEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEV 144 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 144 (275)
.....++|||+|||.++++++|+++|+.||.|.. |+++.++ +|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445689999999999999999999999999999 9999997 899999999999999999999999999999
Q ss_pred ccceeeeeehh
Q 044184 145 SGRIIRVEFAK 155 (275)
Q Consensus 145 ~g~~i~v~~a~ 155 (275)
.|+.|.|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.1e-19 Score=132.51 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=79.5
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||..+++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34457899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ehhccC
Q 044184 153 FAKKFK 158 (275)
Q Consensus 153 ~a~~~~ 158 (275)
++.+..
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998644
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=129.47 Aligned_cols=88 Identities=32% Similarity=0.570 Sum_probs=82.6
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCc
Q 044184 249 KFGQKNDD 256 (275)
Q Consensus 249 ~~a~~~~~ 256 (275)
.+++++.+
T Consensus 101 ~~a~~k~d 108 (108)
T 2jrs_A 101 GHVTERTD 108 (108)
T ss_dssp ECSCSSCC
T ss_pred EEcccCCC
Confidence 99988753
No 69
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=130.34 Aligned_cols=85 Identities=27% Similarity=0.473 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.+.++|||+|||.++++++|+++|+.||.|..|+++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
......
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 875543
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=130.41 Aligned_cols=86 Identities=16% Similarity=0.313 Sum_probs=79.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcC------ccccccc
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFD------TQEVSGR 147 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~------~~~~~g~ 147 (275)
....++|||+|||.++++++|+++|..||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|+ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred eeeeeehhccCCC
Q 044184 148 IIRVEFAKKFKKP 160 (275)
Q Consensus 148 ~i~v~~a~~~~~~ 160 (275)
.|.|.++.+....
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999865443
No 71
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=5.1e-20 Score=129.44 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=72.6
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcC--CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANF--NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
.+|||+|||..+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 044184 253 KNDDV 257 (275)
Q Consensus 253 ~~~~~ 257 (275)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=126.15 Aligned_cols=86 Identities=33% Similarity=0.519 Sum_probs=81.4
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 044184 252 QKNDDV 257 (275)
Q Consensus 252 ~~~~~~ 257 (275)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887654
No 73
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=4.5e-19 Score=130.40 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=83.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999876543
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=127.21 Aligned_cols=87 Identities=26% Similarity=0.499 Sum_probs=81.6
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeE-EEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSS-KVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
.+.++|||+|||..+++++|+++|++||.|..+ .++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccCCccc
Q 044184 251 GQKNDDVS 258 (275)
Q Consensus 251 a~~~~~~~ 258 (275)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99877543
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.9e-20 Score=132.66 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCcccccc-ce
Q 044184 77 IRRKLYVFNLPW------SFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG-RI 148 (275)
Q Consensus 77 ~~~~l~v~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~ 148 (275)
..++|||+|||. ++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999999 79999999999999999999999999999999 99
Q ss_pred eeeeehhcc
Q 044184 149 IRVEFAKKF 157 (275)
Q Consensus 149 i~v~~a~~~ 157 (275)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998753
No 76
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=134.42 Aligned_cols=88 Identities=20% Similarity=0.389 Sum_probs=81.5
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
......++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eehhccCCC
Q 044184 152 EFAKKFKKP 160 (275)
Q Consensus 152 ~~a~~~~~~ 160 (275)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 77
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-19 Score=126.45 Aligned_cols=85 Identities=24% Similarity=0.390 Sum_probs=79.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCcee--------EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 044184 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS--------SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK 239 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 239 (275)
.....+.++|||+|||..+++++|+++|++||.+.. +.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999998 999999899999999999999999999999999999
Q ss_pred ccCCeeEEEEEcc
Q 044184 240 ELMGRPLRLKFGQ 252 (275)
Q Consensus 240 ~i~g~~l~v~~a~ 252 (275)
.+.|+.|.|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 78
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=128.84 Aligned_cols=87 Identities=21% Similarity=0.376 Sum_probs=81.9
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 044184 250 FGQKNDD 256 (275)
Q Consensus 250 ~a~~~~~ 256 (275)
|+.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988653
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=127.23 Aligned_cols=80 Identities=29% Similarity=0.542 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||..+++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 346899999999999999999999999999999999998 7999999999999999999999999999999999999987
Q ss_pred h
Q 044184 155 K 155 (275)
Q Consensus 155 ~ 155 (275)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=127.91 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=77.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
..+.++|||+|||..+++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3446899999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred hhc
Q 044184 154 AKK 156 (275)
Q Consensus 154 a~~ 156 (275)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 863
No 81
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=128.39 Aligned_cols=86 Identities=13% Similarity=0.204 Sum_probs=79.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhcc-CCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc-cccceeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE-VSGRIIRVE 152 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~i~v~ 152 (275)
....++|||+|||.++++++|+++|+. ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|+..|++.. +.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345689999999999999999999999 999999999999999999999999999999999999999999 999999999
Q ss_pred ehhccCCC
Q 044184 153 FAKKFKKP 160 (275)
Q Consensus 153 ~a~~~~~~ 160 (275)
++.+....
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99765443
No 82
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=131.41 Aligned_cols=88 Identities=28% Similarity=0.443 Sum_probs=80.8
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCcee--------EEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccc
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV--------DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQE 143 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 143 (275)
......++|||+|||..+++++|+++|+.||.|. .|+|+.++ ++.++|||||+|.+.++|.+|+..|+|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445679999999999999999999999999998 69999996 89999999999999999999999999999
Q ss_pred cccceeeeeehhccCCC
Q 044184 144 VSGRIIRVEFAKKFKKP 160 (275)
Q Consensus 144 ~~g~~i~v~~a~~~~~~ 160 (275)
+.|+.|.|.++......
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999875543
No 83
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=127.52 Aligned_cols=88 Identities=30% Similarity=0.490 Sum_probs=82.9
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99987754
No 84
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=127.54 Aligned_cols=89 Identities=24% Similarity=0.360 Sum_probs=83.4
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45668999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|++++....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 999876543
No 85
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=128.93 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=82.9
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.|++.+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999986544
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=129.89 Aligned_cols=83 Identities=22% Similarity=0.480 Sum_probs=78.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred hhcc
Q 044184 154 AKKF 157 (275)
Q Consensus 154 a~~~ 157 (275)
+.+.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8753
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=129.34 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=78.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||.++++++|+++|..||.|.+|+|+.++++.++|||||+|.+.++|.+|+..|++..+.|+.|.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccC
Q 044184 155 KKFK 158 (275)
Q Consensus 155 ~~~~ 158 (275)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=125.54 Aligned_cols=85 Identities=28% Similarity=0.372 Sum_probs=80.3
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccc
Q 044184 249 KFGQK 253 (275)
Q Consensus 249 ~~a~~ 253 (275)
.|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 89
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=128.09 Aligned_cols=89 Identities=29% Similarity=0.476 Sum_probs=83.2
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.|++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887654
No 90
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=128.06 Aligned_cols=81 Identities=27% Similarity=0.406 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||+.+++++|+++|+.||.|.+|+|+.+++|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.6e-19 Score=125.33 Aligned_cols=87 Identities=18% Similarity=0.387 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEcccCCc
Q 044184 249 KFGQKNDD 256 (275)
Q Consensus 249 ~~a~~~~~ 256 (275)
.|++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99988764
No 92
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=128.05 Aligned_cols=89 Identities=25% Similarity=0.391 Sum_probs=83.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|++++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=128.58 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcee-EEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccce----e
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV-DVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRI----I 149 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~----i 149 (275)
...++|||+|||.++++++|+++|+.||.|. +|++++++ ++.++|||||+|.+.++|.+|+..|+|..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3468999999999999999999999999999 99999998 8999999999999999999999999999999999 9
Q ss_pred eeeehhccC
Q 044184 150 RVEFAKKFK 158 (275)
Q Consensus 150 ~v~~a~~~~ 158 (275)
+|.|+.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998644
No 94
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=125.27 Aligned_cols=84 Identities=23% Similarity=0.424 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcc
Q 044184 249 KFGQ 252 (275)
Q Consensus 249 ~~a~ 252 (275)
.||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 95
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.6e-19 Score=126.54 Aligned_cols=86 Identities=29% Similarity=0.520 Sum_probs=78.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++|||+|||..+++++|+++|+.||.|..|+|+.+..+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445799999999999999999999999999999999998854 899999999999999999999999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9875543
No 96
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.4e-19 Score=129.89 Aligned_cols=86 Identities=23% Similarity=0.387 Sum_probs=79.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCcccc---ccceee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEV---SGRIIR 150 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~i~ 150 (275)
....++|||+|||..+++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+..|++..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456899999999999999999999999999999999998 799999999999999999999999999987 899999
Q ss_pred eeehhccCCC
Q 044184 151 VEFAKKFKKP 160 (275)
Q Consensus 151 v~~a~~~~~~ 160 (275)
|.++......
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999875543
No 97
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=6.6e-19 Score=126.89 Aligned_cols=82 Identities=23% Similarity=0.420 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||..+++++|+++|+.|| |.+|+|+.++ ++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4468999999999999999999999997 9999999998 8999999999999999999999 79999999999999999
Q ss_pred hccCC
Q 044184 155 KKFKK 159 (275)
Q Consensus 155 ~~~~~ 159 (275)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86544
No 98
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.4e-19 Score=134.43 Aligned_cols=85 Identities=27% Similarity=0.471 Sum_probs=79.3
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
...+.++|||+|||..+++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ehhccC
Q 044184 153 FAKKFK 158 (275)
Q Consensus 153 ~a~~~~ 158 (275)
++.+.+
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997643
No 99
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=126.97 Aligned_cols=85 Identities=29% Similarity=0.498 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCC--C--CCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG--G--KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
+.++|||+|||.++++++|+++|+.||.|..|.++.++. | .++|||||+|.+.++|.+|+..|+|..+.|+.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 468999999999999999999999999999999998763 3 889999999999999999999999999999999999
Q ss_pred ehhccCCCC
Q 044184 153 FAKKFKKPR 161 (275)
Q Consensus 153 ~a~~~~~~~ 161 (275)
++.......
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998755443
No 100
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=5.8e-20 Score=131.74 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=80.2
Q ss_pred CCcEEEEecCCC------CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-ee
Q 044184 173 TQHKLYVSNLSW------KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG-RP 245 (275)
Q Consensus 173 ~~~~l~v~nl~~------~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g-~~ 245 (275)
..++|||+|||. .+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEcccCCcc
Q 044184 246 LRLKFGQKNDDV 257 (275)
Q Consensus 246 l~v~~a~~~~~~ 257 (275)
|.|.++.+++..
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999876543
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-19 Score=128.32 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=83.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCccCC
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD------GKELMG 243 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~------g~~i~g 243 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|| |..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeEEEEEcccCCccc
Q 044184 244 RPLRLKFGQKNDDVS 258 (275)
Q Consensus 244 ~~l~v~~a~~~~~~~ 258 (275)
+.|.|.|+.++....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999999876544
No 102
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5e-19 Score=129.05 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=82.5
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99887643
No 103
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=129.71 Aligned_cols=88 Identities=30% Similarity=0.473 Sum_probs=80.0
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||.++++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..+++ .+.|+.|.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34457999999999999999999999999999999999998 899999999999999999999999998 8999999999
Q ss_pred ehhccCCCCC
Q 044184 153 FAKKFKKPRP 162 (275)
Q Consensus 153 ~a~~~~~~~~ 162 (275)
++.....+..
T Consensus 92 ~a~~~~~~~~ 101 (116)
T 2cqd_A 92 LAYLGAKPRS 101 (116)
T ss_dssp ESTTTCCCCC
T ss_pred EcccCCCccc
Confidence 9976544433
No 104
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.6e-19 Score=131.50 Aligned_cols=82 Identities=23% Similarity=0.525 Sum_probs=76.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||.++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ehh
Q 044184 153 FAK 155 (275)
Q Consensus 153 ~a~ 155 (275)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 105
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.4e-19 Score=126.91 Aligned_cols=89 Identities=29% Similarity=0.536 Sum_probs=82.7
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeee-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCeeE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE-SNEGRSAGYGFVSFATKEEAEAAISSL-DGKELMGRPL 246 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~i~g~~l 246 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+ ..++.++|||||+|.+.++|.+|++.| ||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34566789999999999999999999999999999999988 778999999999999999999999999 9999999999
Q ss_pred EEEEcccCCcc
Q 044184 247 RLKFGQKNDDV 257 (275)
Q Consensus 247 ~v~~a~~~~~~ 257 (275)
.|.|++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999987654
No 106
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=6.3e-19 Score=124.24 Aligned_cols=83 Identities=29% Similarity=0.491 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||.++++++|+++|+.||.|..|++.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34689999999999999999999999999999999985 78899999999999999999999999999999999999998
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 107
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=126.56 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=78.0
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++|||+|||..+++++|+++|+.||.|..|+|+.+..+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3345799999999999999999999999999999999998744 689999999999999999999999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9875443
No 108
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1.7e-18 Score=125.13 Aligned_cols=88 Identities=26% Similarity=0.381 Sum_probs=81.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC---eeE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG---RPL 246 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g---~~l 246 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567999999999999999999999999999999999886 78999999999999999999999999999998 999
Q ss_pred EEEEcccCCccc
Q 044184 247 RLKFGQKNDDVS 258 (275)
Q Consensus 247 ~v~~a~~~~~~~ 258 (275)
.|.|++++....
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999887654
No 109
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=5.5e-19 Score=123.26 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=74.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||+.+++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+. +++..+.|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998 89999999999999999999997 58888999999998
Q ss_pred eh
Q 044184 153 FA 154 (275)
Q Consensus 153 ~a 154 (275)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 110
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=125.89 Aligned_cols=88 Identities=34% Similarity=0.554 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557889999999999999999999999999999999887 8899999999999999999999999999999999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|++++.+..
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9999877543
No 111
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=124.48 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.+.++|||+|||.++++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999998875
Q ss_pred h
Q 044184 155 K 155 (275)
Q Consensus 155 ~ 155 (275)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=5.2e-19 Score=123.88 Aligned_cols=78 Identities=27% Similarity=0.518 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
.++|||+|||.++++++|+++|+.||.|.++.++.++ ++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5899999999999999999999999999999999998 9999999999999999999999 8999999999999999875
No 113
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=127.26 Aligned_cols=80 Identities=25% Similarity=0.396 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc--cccccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT--QEVSGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~i~v~~ 153 (275)
.+.++|||+|||+.+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..|++ ..+.|++|.|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34689999999999999999999999999999999875 69999999999999999998864 679999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+......
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9865443
No 114
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=125.24 Aligned_cols=87 Identities=24% Similarity=0.394 Sum_probs=81.6
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCce-eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee---
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPV-SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP--- 245 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~--- 245 (275)
...+.++|||+|||..+++++|+++|++||.+. .+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -EEEEEcccCCc
Q 044184 246 -LRLKFGQKNDD 256 (275)
Q Consensus 246 -l~v~~a~~~~~ 256 (275)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987653
No 115
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=126.77 Aligned_cols=82 Identities=16% Similarity=0.353 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-C-CCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-G-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
...++|||+|||..+++++|+++|+.|| |.+|.|+.++ + +.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3468999999999999999999999999 9999999998 5 899999999999999999999 8999999999999999
Q ss_pred hhccCC
Q 044184 154 AKKFKK 159 (275)
Q Consensus 154 a~~~~~ 159 (275)
+.+...
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987544
No 116
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=125.75 Aligned_cols=87 Identities=23% Similarity=0.398 Sum_probs=80.2
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESN---EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
.+.++|||+|||..+++++|+++|++||.|..+.++.+.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876543
No 117
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.6e-19 Score=124.82 Aligned_cols=86 Identities=21% Similarity=0.350 Sum_probs=80.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999889999998999999999999999999999999999999999999999
Q ss_pred EcccCC
Q 044184 250 FGQKND 255 (275)
Q Consensus 250 ~a~~~~ 255 (275)
++..+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 988653
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=131.99 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 46899999999999999999999999999999999999 7999999999999999999999 899999999999999997
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 119
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1e-18 Score=126.53 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCee
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL---MGRP 245 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i---~g~~ 245 (275)
......++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999988999999999999999999999999999987 8999
Q ss_pred EEEEEcccCCcc
Q 044184 246 LRLKFGQKNDDV 257 (275)
Q Consensus 246 l~v~~a~~~~~~ 257 (275)
|.|.|+.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999887643
No 120
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=134.27 Aligned_cols=84 Identities=30% Similarity=0.434 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeE--EEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCcc----ccccce
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD--VEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQ----EVSGRI 148 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~----~~~g~~ 148 (275)
...++|||+|||+++++++|+++|+.||.|.. |+|++|+ +|+++|||||+|.+. +|.+|+..|+|. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999966 9999999 999999999999999 999999999999 999999
Q ss_pred eeeeehhccCCC
Q 044184 149 IRVEFAKKFKKP 160 (275)
Q Consensus 149 i~v~~a~~~~~~ 160 (275)
|.|+++.+....
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999875443
No 121
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=4.9e-19 Score=132.32 Aligned_cols=88 Identities=20% Similarity=0.327 Sum_probs=81.0
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33457899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ehhccCCCC
Q 044184 153 FAKKFKKPR 161 (275)
Q Consensus 153 ~a~~~~~~~ 161 (275)
++.......
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998765443
No 122
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=6.1e-19 Score=127.95 Aligned_cols=81 Identities=26% Similarity=0.390 Sum_probs=77.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+++|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred h
Q 044184 155 K 155 (275)
Q Consensus 155 ~ 155 (275)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=127.41 Aligned_cols=87 Identities=20% Similarity=0.401 Sum_probs=80.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3557899999999999999999999999999999999886 899999999999999999999999999999999999999
Q ss_pred cccCCccc
Q 044184 251 GQKNDDVS 258 (275)
Q Consensus 251 a~~~~~~~ 258 (275)
++++....
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 99876543
No 124
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=137.05 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCC--ceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCG--TVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.|+ +|+++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred hhc
Q 044184 154 AKK 156 (275)
Q Consensus 154 a~~ 156 (275)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 125
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=126.98 Aligned_cols=88 Identities=23% Similarity=0.381 Sum_probs=82.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCce--------eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPV--------SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i 241 (275)
.....++|||+|||..+++++|+++|++||.|. .+.++.+..++.++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999888 689999988999999999999999999999999999999
Q ss_pred CCeeEEEEEcccCCcc
Q 044184 242 MGRPLRLKFGQKNDDV 257 (275)
Q Consensus 242 ~g~~l~v~~a~~~~~~ 257 (275)
.|+.|.|.|++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987654
No 126
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=127.41 Aligned_cols=84 Identities=26% Similarity=0.423 Sum_probs=78.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999998 99999999999999
Q ss_pred hhccCC
Q 044184 154 AKKFKK 159 (275)
Q Consensus 154 a~~~~~ 159 (275)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 986544
No 127
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-19 Score=129.26 Aligned_cols=87 Identities=26% Similarity=0.572 Sum_probs=81.8
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCccc
Q 044184 252 QKNDDVS 258 (275)
Q Consensus 252 ~~~~~~~ 258 (275)
.++....
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9877554
No 128
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=4e-19 Score=124.16 Aligned_cols=81 Identities=17% Similarity=0.336 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCC-CcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
..++|||+|||.++++++|+++|+.||.|.+|.++.+. ++. ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35899999999999999999999999999999999888 444 8999999999999999999999999999999999998
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 129
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=130.02 Aligned_cols=83 Identities=23% Similarity=0.438 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||.++++++|+++|..||.|..|.|+.++ ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 899999999999999999999997 9999999999999998
Q ss_pred ccCCC
Q 044184 156 KFKKP 160 (275)
Q Consensus 156 ~~~~~ 160 (275)
+....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 75543
No 130
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.2e-18 Score=124.16 Aligned_cols=87 Identities=21% Similarity=0.355 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|++| +|..+.++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 345667899999999999999999999998 5999999999999999999999999999999999 89999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.|++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999887643
No 131
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=8e-19 Score=131.60 Aligned_cols=87 Identities=29% Similarity=0.413 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 044184 249 KFGQKND 255 (275)
Q Consensus 249 ~~a~~~~ 255 (275)
.|++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998865
No 132
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=128.55 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=79.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||..+++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCC
Q 044184 155 KKFKK 159 (275)
Q Consensus 155 ~~~~~ 159 (275)
.....
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 86443
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=127.65 Aligned_cols=82 Identities=17% Similarity=0.348 Sum_probs=73.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC--CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK--GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
.....++|||+|||.++++++|+++|+.|| |.+|+|+.++ +|+++|||||+|.+.++|.+|+ .|+|..+.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 344579999999999999999999999999 9999999987 7999999999999999999999 79999999999999
Q ss_pred eehhcc
Q 044184 152 EFAKKF 157 (275)
Q Consensus 152 ~~a~~~ 157 (275)
+++.+.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998753
No 134
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=126.91 Aligned_cols=92 Identities=23% Similarity=0.381 Sum_probs=83.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
.......++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.+++ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999998 89999999
Q ss_pred EEEcccCCccccc
Q 044184 248 LKFGQKNDDVSES 260 (275)
Q Consensus 248 v~~a~~~~~~~~~ 260 (275)
|.|+..+......
T Consensus 90 V~~a~~~~~~~~~ 102 (116)
T 2cqd_A 90 VNLAYLGAKPRSL 102 (116)
T ss_dssp EEESTTTCCCCCC
T ss_pred EEEcccCCCcccc
Confidence 9999877655433
No 135
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=122.06 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
..++|||+|||..+++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357999999999999999999999999999999999877665 8999999999999999999999999999999999999
Q ss_pred ccCC
Q 044184 252 QKND 255 (275)
Q Consensus 252 ~~~~ 255 (275)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 136
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=127.33 Aligned_cols=82 Identities=28% Similarity=0.529 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||..+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35899999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.6e-19 Score=120.64 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
+|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+. ++|..+.|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998 89999999999999999999998 8999999999999875
No 138
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=120.69 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=77.7
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++| +|..+.++.+ .+|.++|||||+|.+.++|.+|++ |||..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999998 9999999998 889999999999999999999999 99999999999999
Q ss_pred EcccCC
Q 044184 250 FGQKND 255 (275)
Q Consensus 250 ~a~~~~ 255 (275)
+++++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998774
No 139
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=124.70 Aligned_cols=86 Identities=20% Similarity=0.410 Sum_probs=79.7
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE-GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
...+.++|||+|||..+++++|+++|++|| |..+.++.++.+ +.++|||||+|.+.++|.+|+ .|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999988 999999999887 999999999999999999999 89999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.+++++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987654
No 140
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-18 Score=122.30 Aligned_cols=88 Identities=25% Similarity=0.477 Sum_probs=79.9
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+.. .++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456679999999999999999999999999999999998753 38999999999999999999999999999999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999876543
No 141
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=124.59 Aligned_cols=84 Identities=29% Similarity=0.460 Sum_probs=75.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999855 4568999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
......
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 875543
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=1.8e-19 Score=161.54 Aligned_cols=162 Identities=17% Similarity=0.298 Sum_probs=112.3
Q ss_pred HHHhhccCCceeEEEEEeCC---CCCCcceE-----EEEEcCHHHHHHHHHhcCccccccceeeeeehh------ccCCC
Q 044184 95 IKNLFAPCGTVVDVEIIKHK---GGKNRNFA-----FVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK------KFKKP 160 (275)
Q Consensus 95 L~~~F~~~G~i~~v~i~~~~---~~~~~g~a-----fV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~------~~~~~ 160 (275)
|..+|.++|+|..|..+... .....+++ |+.|.....+..++..++.....++........ .....
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67899999998877433211 11223333 778877666555554333322221110000000 00000
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 044184 161 RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240 (275)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 240 (275)
............+.++|||+|||..+++++|+++|++||.|+.+.|+.+..+|.++|||||+|.+.++|.+||..|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 00111112234556899999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCeeEEEEEcccCCc
Q 044184 241 LMGRPLRLKFGQKNDD 256 (275)
Q Consensus 241 i~g~~l~v~~a~~~~~ 256 (275)
|.|+.|.|.|+..+..
T Consensus 169 i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 169 IDGRRVLVDVERGRTV 184 (437)
T ss_pred ECCEEEEEEEeCCCCC
Confidence 9999999999987643
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.2e-18 Score=128.72 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=78.7
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcc
Q 044184 249 KFGQ 252 (275)
Q Consensus 249 ~~a~ 252 (275)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 144
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=124.72 Aligned_cols=81 Identities=26% Similarity=0.300 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIK----NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
..++|||+|||.++++++|+ ++|+.||.|.+|+|+.++.+ +|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35799999999999999999 99999999999999998855 8999999999999999999999999999999999
Q ss_pred ehhccCC
Q 044184 153 FAKKFKK 159 (275)
Q Consensus 153 ~a~~~~~ 159 (275)
++.+...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9976443
No 145
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=126.73 Aligned_cols=84 Identities=18% Similarity=0.350 Sum_probs=74.4
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++ +|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 34457899999999999999999999999999999999998 8999999999999999999999975 588999999999
Q ss_pred ehhccC
Q 044184 153 FAKKFK 158 (275)
Q Consensus 153 ~a~~~~ 158 (275)
++.+..
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987543
No 146
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-18 Score=122.35 Aligned_cols=87 Identities=24% Similarity=0.431 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+..+ ++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34566799999999999999999999999999999999987433 6899999999999999999999999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.|++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999987654
No 147
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=129.59 Aligned_cols=90 Identities=26% Similarity=0.454 Sum_probs=83.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|++++....
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 148
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=122.58 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=71.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcC--ccccccceeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD--TQEVSGRIIRVE 152 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i~v~ 152 (275)
..+.++|||+|||..+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|+ +..+.|++|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 345789999999999999999999999999999998864 7999999999999999999775 566999999999
Q ss_pred ehhccCCC
Q 044184 153 FAKKFKKP 160 (275)
Q Consensus 153 ~a~~~~~~ 160 (275)
|+......
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99865443
No 149
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=125.53 Aligned_cols=87 Identities=30% Similarity=0.449 Sum_probs=81.1
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhh-cCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc-cCCeeEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSA-NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE-LMGRPLRL 248 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-i~g~~l~v 248 (275)
..+.++|||+|||..+++++|+++|++ ||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||.. +.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999997 89999999999999999999999999999 99999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|+.++....
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998876543
No 150
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=5.9e-18 Score=126.08 Aligned_cols=88 Identities=30% Similarity=0.426 Sum_probs=81.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345677899999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.||......
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999886544
No 151
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=134.94 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=78.1
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcC--CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANF--NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..++|||+|||+.+++++|+++|++|| .|..+.++.|+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 044184 251 GQKND 255 (275)
Q Consensus 251 a~~~~ 255 (275)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 152
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.7e-19 Score=127.04 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=77.6
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|++||.|..+.++.+.. |.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999876 9999999999999999999999 999999999999999
Q ss_pred cccCCc
Q 044184 251 GQKNDD 256 (275)
Q Consensus 251 a~~~~~ 256 (275)
+..-.+
T Consensus 86 ~~~~~~ 91 (103)
T 1s79_A 86 KDDYFA 91 (103)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 887443
No 153
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=121.60 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||.++++++|+++|+.| .|.+|+|+++.+|+++|||||+|.+.++|.+|+. |+|..+.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 346899999999999999999999999 9999999999999999999999999999999999 99999999999999987
Q ss_pred cc
Q 044184 156 KF 157 (275)
Q Consensus 156 ~~ 157 (275)
+.
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=124.98 Aligned_cols=79 Identities=30% Similarity=0.494 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc--cccceeeee
Q 044184 76 NIRRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE--VSGRIIRVE 152 (275)
Q Consensus 76 ~~~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~ 152 (275)
.++++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+..|++.. +.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3578999999999 9999999999999999999999864 4899999999999999999998754 899999999
Q ss_pred ehhccCC
Q 044184 153 FAKKFKK 159 (275)
Q Consensus 153 ~a~~~~~ 159 (275)
++...+.
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9986544
No 155
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=125.47 Aligned_cols=83 Identities=25% Similarity=0.526 Sum_probs=76.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccc--------c
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV--------S 145 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--------~ 145 (275)
.....++|||+|||..+++++|+++|+.||.|..|+|+.++++.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 33456899999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred cceeeeeehhc
Q 044184 146 GRIIRVEFAKK 156 (275)
Q Consensus 146 g~~i~v~~a~~ 156 (275)
+++|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 77899998874
No 156
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=122.67 Aligned_cols=84 Identities=21% Similarity=0.429 Sum_probs=76.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456899999999999999999999999999999999998 89999999999999999999998 47789999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9875443
No 157
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=122.46 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE--LMGRPLR 247 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--i~g~~l~ 247 (275)
...++++|||+|||..+++++|+++|++||.|.++.+++ .||+|||+|.+.++|.+|++.|+|.. +.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 456788999999999999999999999999999998874 47999999999999999999999876 7899999
Q ss_pred EEEcccCC
Q 044184 248 LKFGQKND 255 (275)
Q Consensus 248 v~~a~~~~ 255 (275)
|.|+++++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 158
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=121.82 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=76.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHH----HHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLR----EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
....++|||+|||..+++++|+ ++|++||.|..+.++.+..+ +|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999 99999999999999988655 8899999999999999999999999999999
Q ss_pred EEEEcccCCcc
Q 044184 247 RLKFGQKNDDV 257 (275)
Q Consensus 247 ~v~~a~~~~~~ 257 (275)
.|.++++....
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999877543
No 159
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=7.5e-19 Score=125.37 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||..+++++|+++|..||.|..+.++.++ +|+++|||||+|.+.++|.+|+..|+|..+.|+.|.|+++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 35899999999999999999999999999988888877 89999999999999999999999999999999999999987
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=122.43 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=77.6
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.++. +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999998865 8899999999999999999999999999999999999
Q ss_pred Eccc
Q 044184 250 FGQK 253 (275)
Q Consensus 250 ~a~~ 253 (275)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 161
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=7.8e-19 Score=126.96 Aligned_cols=83 Identities=24% Similarity=0.351 Sum_probs=75.7
Q ss_pred ccCCCCeEEEcCCCCCC------CHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccc
Q 044184 74 KQNIRRKLYVFNLPWSF------SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR 147 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 147 (275)
.....++|||+|||..+ ++++|+++|+.||.|.+|.|+ ..+|.++|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 33446899999999999 789999999999999999988 45889999999999999999999999999999998
Q ss_pred -eeeeeehhcc
Q 044184 148 -IIRVEFAKKF 157 (275)
Q Consensus 148 -~i~v~~a~~~ 157 (275)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 162
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=8.9e-19 Score=130.53 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||.++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999999997 9999999999999999999999 799999999999999998
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 163
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2.4e-18 Score=120.47 Aligned_cols=81 Identities=19% Similarity=0.416 Sum_probs=77.2
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999999889999999999999999999999 8999999999999999987
Q ss_pred CC
Q 044184 254 ND 255 (275)
Q Consensus 254 ~~ 255 (275)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 164
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=124.18 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||+++++++|+++|+.||.+ +|+|+.+++++++|||||+|.+.++|.+|+. +++..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 346899999999999999999999999955 9999999999999999999999999999995 79999999999999887
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 165
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=3.1e-18 Score=124.15 Aligned_cols=83 Identities=31% Similarity=0.454 Sum_probs=78.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45668899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Eccc
Q 044184 250 FGQK 253 (275)
Q Consensus 250 ~a~~ 253 (275)
|+.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 166
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=2.2e-19 Score=126.11 Aligned_cols=80 Identities=34% Similarity=0.549 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhcc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKF 157 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~ 157 (275)
++|||+|||.++++++|+++|+.||.|.+|.+..++ +|.++|||||+|.+.+ |.+|+..|+|..+.|+.|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999999999999999999999999998 7999999999999999 99999999999999999999999864
Q ss_pred CC
Q 044184 158 KK 159 (275)
Q Consensus 158 ~~ 159 (275)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 167
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=122.82 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc--cccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE--VSGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~~ 153 (275)
.+.++|||+|||..+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|++.. +.|++|.|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34689999999999999999999999999999998763 6899999999999999999887654 8999999999
Q ss_pred hhccCCCC
Q 044184 154 AKKFKKPR 161 (275)
Q Consensus 154 a~~~~~~~ 161 (275)
+.......
T Consensus 88 a~~~~~~~ 95 (104)
T 1wex_A 88 STSKRITR 95 (104)
T ss_dssp CSSSSCCC
T ss_pred ccCccccC
Confidence 98755443
No 168
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=1.1e-18 Score=123.71 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=76.2
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 044184 251 GQK 253 (275)
Q Consensus 251 a~~ 253 (275)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 169
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=123.16 Aligned_cols=83 Identities=27% Similarity=0.500 Sum_probs=75.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||.++++++|+++|+.||.| +++.+.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3457999999999999999999999999987 5677778999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
.+....
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 170
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=131.21 Aligned_cols=80 Identities=34% Similarity=0.518 Sum_probs=75.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|..|+++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3457999999999999999999999999999999999997 899999999999999999999999999999999999987
Q ss_pred h
Q 044184 154 A 154 (275)
Q Consensus 154 a 154 (275)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 171
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=2.3e-18 Score=128.63 Aligned_cols=90 Identities=20% Similarity=0.357 Sum_probs=83.4
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|+.++....
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998876543
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=3.2e-18 Score=120.61 Aligned_cols=86 Identities=23% Similarity=0.425 Sum_probs=79.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999988873 78899999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|+++....
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99987654
No 173
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.1e-19 Score=120.43 Aligned_cols=75 Identities=20% Similarity=0.430 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
++|||+|||.++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+..++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998 89999999999999999999999988 8899999999886
No 174
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=6e-19 Score=133.37 Aligned_cols=85 Identities=29% Similarity=0.438 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||..+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
++....
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875544
No 175
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=9.2e-19 Score=119.97 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999864 78999999999999999999999999999999999773
No 176
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=123.44 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeE-EEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD-VEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||+.+++++|+++|+.||.|.+ |.|+.+.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34689999999999999999999999999987 8898888999999999999999999999997 999999999999988
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
No 177
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=126.33 Aligned_cols=86 Identities=22% Similarity=0.421 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES-NEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
......++|||+|||..+++++|+++|++|| |..+.++.+. .+|.++|||||+|.+.++|.+|+ .|||..++|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456689999999999999999999999988 9999999887 58999999999999999999999 8999999999999
Q ss_pred EEEcccCCc
Q 044184 248 LKFGQKNDD 256 (275)
Q Consensus 248 v~~a~~~~~ 256 (275)
|.+++++++
T Consensus 92 V~~a~~~~~ 100 (100)
T 2j76_E 92 VDVADQAQD 100 (100)
T ss_dssp CEECCCSCC
T ss_pred EEeccCCCC
Confidence 999988753
No 178
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=126.02 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=73.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc--cccccceeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT--QEVSGRIIRV 151 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~i~v 151 (275)
...+.++|||+|||+.+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..|++ ..+.|++|.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 3445789999999999999999999999999999999875 69999999999999999998875 5799999999
Q ss_pred eehhccCCC
Q 044184 152 EFAKKFKKP 160 (275)
Q Consensus 152 ~~a~~~~~~ 160 (275)
.++......
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999865544
No 179
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=122.40 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=71.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc--cccceeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE--VSGRIIRVE 152 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~ 152 (275)
..++++|||+|||..+++++|+++|++||.|.+|++++ .+|||||+|.+.++|.+|+..|++.. +.|++|.|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34578999999999999999999999999999999975 46899999999999999999999986 789999999
Q ss_pred ehhcc
Q 044184 153 FAKKF 157 (275)
Q Consensus 153 ~a~~~ 157 (275)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99754
No 180
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=125.00 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc-eeEEEEE-eCC-CCCCcceEEEEEcCHHHHHHHHHhcC--ccccccceee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEII-KHK-GGKNRNFAFVTMASPEEAQAAVNQFD--TQEVSGRIIR 150 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~-~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i~ 150 (275)
.+.++|||+|||..+++++|+++|..||. |.+|.++ .+. +|.++|||||+|.+.++|.+|+..|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34689999999999999999999999998 9999998 676 78999999999999999999999996 5889999999
Q ss_pred eeehhccCC
Q 044184 151 VEFAKKFKK 159 (275)
Q Consensus 151 v~~a~~~~~ 159 (275)
|.|+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987554
No 181
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=6e-19 Score=125.14 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
.++|||+|||..+++++|+++|+.||.|..+.++.+. +++++|||||+|.+.++|.+|+..|++..+.|+.|.|+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 5899999999999999999999999999988888887 89999999999999999999999999999999999999875
No 182
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=1.8e-18 Score=134.33 Aligned_cols=85 Identities=29% Similarity=0.438 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||+++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 446899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
.+....
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 875443
No 183
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.1e-18 Score=132.79 Aligned_cols=84 Identities=26% Similarity=0.390 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||.++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hccCC
Q 044184 155 KKFKK 159 (275)
Q Consensus 155 ~~~~~ 159 (275)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 184
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=130.59 Aligned_cols=87 Identities=14% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCcee--EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----ccC
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS--SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK----ELM 242 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~i~ 242 (275)
......++|||+|||+.+++++|+++|++||.|.. ++++.|+.+|.++|||||+|.+. +|.+|+..|||. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34566789999999999999999999999999966 99999988999999999999999 999999999999 999
Q ss_pred CeeEEEEEcccCCc
Q 044184 243 GRPLRLKFGQKNDD 256 (275)
Q Consensus 243 g~~l~v~~a~~~~~ 256 (275)
|+.|.|.|++++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999988654
No 185
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=124.74 Aligned_cols=88 Identities=15% Similarity=0.266 Sum_probs=79.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCC-ceeEEEe-eeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFN-PVSSKVV-FESNEGRSAGYGFVSFATKEEAEAAISSLD--GKELMGRPL 246 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~i~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~i~g~~l 246 (275)
..+.++|||+|||..+++++|+++|.+||. |..+.++ .+..+|.++|||||+|.+.++|.+|++.|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999888 777888999999999999999999999996 589999999
Q ss_pred EEEEcccCCccc
Q 044184 247 RLKFGQKNDDVS 258 (275)
Q Consensus 247 ~v~~a~~~~~~~ 258 (275)
.|.|++++.+..
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876543
No 186
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=124.01 Aligned_cols=82 Identities=12% Similarity=0.164 Sum_probs=73.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCeeEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG--KELMGRPLRL 248 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~i~g~~l~v 248 (275)
..+.++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|++ ..+.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998864 79999999999999999998864 7899999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|++++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998876543
No 187
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=120.02 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccc-eee
Q 044184 78 RRKLYVFNLPWSF------SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR-IIR 150 (275)
Q Consensus 78 ~~~l~v~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~i~ 150 (275)
+++|||+|||..+ ++++|+++|++||.|.+|.+. ..+|+++|||||+|.+.++|.+|+..|||..+.|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3789999999999 789999999999999999987 45889999999999999999999999999999999 888
Q ss_pred ee
Q 044184 151 VE 152 (275)
Q Consensus 151 v~ 152 (275)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 188
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.4e-18 Score=118.62 Aligned_cols=81 Identities=27% Similarity=0.530 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998999999999999999999999997 58889999999999
Q ss_pred Ec
Q 044184 250 FG 251 (275)
Q Consensus 250 ~a 251 (275)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 189
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=122.83 Aligned_cols=87 Identities=31% Similarity=0.475 Sum_probs=79.9
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|.+||.|..+.++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 45567899999999999999999999999999999999886 58999999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++.....
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99865543
No 190
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=126.77 Aligned_cols=81 Identities=30% Similarity=0.540 Sum_probs=75.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||.++++++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 33468999999999999999999999999999999998874 48999999999999999999999999999999999998
Q ss_pred hc
Q 044184 155 KK 156 (275)
Q Consensus 155 ~~ 156 (275)
.+
T Consensus 105 ~~ 106 (109)
T 2err_A 105 TA 106 (109)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 191
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.9e-18 Score=124.82 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=77.6
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.+ |..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4556789999999999999999999999999999999999889999999999999999999999976 589999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 192
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=124.66 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=82.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++. ||..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999998 999999999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9999877543
No 193
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=2e-18 Score=127.43 Aligned_cols=80 Identities=25% Similarity=0.453 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc---eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGT---VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
...++|||+|||+++++++|+++|+.||. |..|+|+.+++|+++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 44689999999999999999999999999 899999999999999999999999999999999 89999999999999
Q ss_pred ehhc
Q 044184 153 FAKK 156 (275)
Q Consensus 153 ~a~~ 156 (275)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 194
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=127.49 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCce-eEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTV-VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||+.+++++|+++|+.||.| ..|+|+.+++|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 346899999999999999999999999999 899999999999999999999999999999986 999999999999998
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 195
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=1.6e-18 Score=117.45 Aligned_cols=75 Identities=20% Similarity=0.395 Sum_probs=72.1
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
+|||+|||..+++++|+++|++||.+..+.++.++.+|.++|||||+|.+.++|++|++ |||..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 9999999999999986
No 196
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=120.15 Aligned_cols=87 Identities=26% Similarity=0.392 Sum_probs=80.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++ ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999 4779999999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|+.++.+..
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 999887643
No 197
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=126.83 Aligned_cols=87 Identities=21% Similarity=0.346 Sum_probs=77.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHH----HHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLR----EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~ 245 (275)
...+.++|||+|||+.+++++|+ ++|++||.|+++.+. .++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34557899999999999999876 799999999887764 46789999999999999999999999999999999
Q ss_pred EEEEEcccCCcccc
Q 044184 246 LRLKFGQKNDDVSE 259 (275)
Q Consensus 246 l~v~~a~~~~~~~~ 259 (275)
|.|.|++.+.+...
T Consensus 102 l~V~~a~~~~~~~~ 115 (127)
T 2a3j_A 102 LVITFSETPQSQVA 115 (127)
T ss_dssp CEEEECCCCCHHHH
T ss_pred EEEEEccCcchhcc
Confidence 99999998876543
No 198
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-19 Score=122.69 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=77.2
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999998876
Q ss_pred cc
Q 044184 252 QK 253 (275)
Q Consensus 252 ~~ 253 (275)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 199
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.8e-18 Score=130.46 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=75.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCc---eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGT---VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
....++|||+|||+++|+++|+++|+.||. |.+|+|+++++|+++|||||+|.+.++|.+|+. +++..+.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345689999999999999999999999999 899999999999999999999999999999999 9999999999999
Q ss_pred eehhc
Q 044184 152 EFAKK 156 (275)
Q Consensus 152 ~~a~~ 156 (275)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98753
No 200
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=117.98 Aligned_cols=78 Identities=31% Similarity=0.492 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
.+.++|||+|||.++++++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|++..+.|+.|.|+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456899999999999999999999999999999986 5899999999999999999999999999999999998
Q ss_pred ccCCC
Q 044184 156 KFKKP 160 (275)
Q Consensus 156 ~~~~~ 160 (275)
+....
T Consensus 79 ~~~~~ 83 (90)
T 2dnq_A 79 NKSKA 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75544
No 201
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=124.60 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HhhccCCceeEEEEEeCC-CC---CCcceEEEEEcCHHHHHHHHHhcCcccccccee
Q 044184 77 IRRKLYVFNLPWSFSVAEIK---NLFAPCGTVVDVEIIKHK-GG---KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII 149 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~-~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 149 (275)
..++|||+|||+.+++++|+ ++|++||.|.+|.|+.+. ++ .++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 36899999999999999999 999999999999999887 43 566999999999999999999999999999999
Q ss_pred eeeehhccC
Q 044184 150 RVEFAKKFK 158 (275)
Q Consensus 150 ~v~~a~~~~ 158 (275)
.|.++.+..
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998654
No 202
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=127.26 Aligned_cols=84 Identities=25% Similarity=0.474 Sum_probs=78.9
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34679999999999999999999999999999999999888999999999999999999999 89999999999999999
Q ss_pred ccCCc
Q 044184 252 QKNDD 256 (275)
Q Consensus 252 ~~~~~ 256 (275)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87543
No 203
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=1e-18 Score=122.66 Aligned_cols=82 Identities=26% Similarity=0.556 Sum_probs=74.1
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~ 254 (275)
++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.+ |.+|+..|||..++|+.|.|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999889999999999999999 99999999999999999999999887
Q ss_pred Ccc
Q 044184 255 DDV 257 (275)
Q Consensus 255 ~~~ 257 (275)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 204
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4e-18 Score=133.35 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=78.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred hhccCC
Q 044184 154 AKKFKK 159 (275)
Q Consensus 154 a~~~~~ 159 (275)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 986544
No 205
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=122.13 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCCCCcEEEEecCCC-CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccCCeeE
Q 044184 170 ARETQHKLYVSNLSW-KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK--ELMGRPL 246 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~i~g~~l 246 (275)
...+.++|||+|||+ .+++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|||. .|.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345688999999999 9999999999999999999998864 589999999999999999999865 4999999
Q ss_pred EEEEcccCCcc
Q 044184 247 RLKFGQKNDDV 257 (275)
Q Consensus 247 ~v~~a~~~~~~ 257 (275)
.|.|++.....
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999976543
No 206
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=119.23 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeeE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL--DGKELMGRPL 246 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~g~~i~g~~l 246 (275)
....+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.| ++..+.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34567789999999999999999999999999999987753 899999999999999999987 4678999999
Q ss_pred EEEEcccCCcc
Q 044184 247 RLKFGQKNDDV 257 (275)
Q Consensus 247 ~v~~a~~~~~~ 257 (275)
.|.|++.+...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999876644
No 207
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=122.79 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=74.7
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD--GKELMGRPLR 247 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~i~g~~l~ 247 (275)
...+.++|||+|||+.+++++|+++|++||.|+++.++.+ +|||||+|.+.++|.+|++.|+ +..+.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4556789999999999999999999999999999998864 7999999999999999999987 4689999999
Q ss_pred EEEcccCCccc
Q 044184 248 LKFGQKNDDVS 258 (275)
Q Consensus 248 v~~a~~~~~~~ 258 (275)
|.|++++....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998876543
No 208
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=125.06 Aligned_cols=87 Identities=24% Similarity=0.444 Sum_probs=81.0
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|.+|++. +|..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999989999999999999999999999997 99999999999999
Q ss_pred cccCCccc
Q 044184 251 GQKNDDVS 258 (275)
Q Consensus 251 a~~~~~~~ 258 (275)
+.++.+..
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99887543
No 209
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=127.96 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||+ |||..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567899999999999999999999999998887888888899999999999999999999999 9999999999999
Q ss_pred EEcccCCc
Q 044184 249 KFGQKNDD 256 (275)
Q Consensus 249 ~~a~~~~~ 256 (275)
.++..++.
T Consensus 99 ~~a~~~~~ 106 (124)
T 1wel_A 99 HPITKKGM 106 (124)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99987653
No 210
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=120.18 Aligned_cols=86 Identities=27% Similarity=0.522 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
....+.++|||+|||..+++++|+++|+.| ..+.++.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999999999999999975 47888888889999999999999999999999999999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.|++++.+.
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999987654
No 211
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.4e-17 Score=128.98 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=81.8
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 044184 250 FGQKNDD 256 (275)
Q Consensus 250 ~a~~~~~ 256 (275)
|+++...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987654
No 212
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=1.1e-17 Score=124.65 Aligned_cols=83 Identities=20% Similarity=0.422 Sum_probs=78.5
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
..++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred cCCc
Q 044184 253 KNDD 256 (275)
Q Consensus 253 ~~~~ 256 (275)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 213
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=126.93 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIK----NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
+.++|||+|||+.+++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|..|+..|||..+.|+.|.|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 46899999999999999876 699999999998774 367899999999999999999999999999999999999
Q ss_pred ehhccC
Q 044184 153 FAKKFK 158 (275)
Q Consensus 153 ~a~~~~ 158 (275)
|+....
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997543
No 214
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=120.69 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=76.9
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 455678999999999999999999999999999988864 35689999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99887543
No 215
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=128.81 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeC-CCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||+++++++|+++|+.||.|..+.++.+ .+|+++|||||+|.+.++|.+|+. |++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 44689999999999999999999999999988544444 499999999999999999999999 9999999999999988
Q ss_pred hc
Q 044184 155 KK 156 (275)
Q Consensus 155 ~~ 156 (275)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 216
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=126.76 Aligned_cols=86 Identities=26% Similarity=0.319 Sum_probs=74.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
..+.++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999998443222222 788999999999999999999999999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+......
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9875543
No 217
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=6.9e-18 Score=115.63 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=69.8
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
.+.-|||+||++.+++++|+++|.+||.|+++.+.. ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999864 69999999999999999999999999999999999993
No 218
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=120.08 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccCCeeEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGK--ELMGRPLR 247 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~i~g~~l~ 247 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|++. .+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4566789999999999999999999999999999887742 799999999999999999988764 59999999
Q ss_pred EEEcccCCcc
Q 044184 248 LKFGQKNDDV 257 (275)
Q Consensus 248 v~~a~~~~~~ 257 (275)
|.|++.+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999886644
No 219
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.3e-18 Score=122.10 Aligned_cols=85 Identities=25% Similarity=0.482 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999874 348999999999999999999999999999999999
Q ss_pred EEcccCC
Q 044184 249 KFGQKND 255 (275)
Q Consensus 249 ~~a~~~~ 255 (275)
.+++++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998763
No 220
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=125.65 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=75.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCc---eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGT---VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
....++|||+|||+++++++|+++|+.||. |..|.|+.++.|+++|||||+|.+.++|.+|+. +++..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345789999999999999999999999998 899999999999999999999999999999999 8999999999999
Q ss_pred eehhc
Q 044184 152 EFAKK 156 (275)
Q Consensus 152 ~~a~~ 156 (275)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98764
No 221
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=116.37 Aligned_cols=76 Identities=25% Similarity=0.469 Sum_probs=73.0
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
++|||+|||..+++++|+++|++||.+..+.++.++.+|.++|||||+|.+.++|.+|++.++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999999987
No 222
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.7e-18 Score=122.95 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=78.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHH---HHHhhcCCceeEEEeeeCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLR---EFFSANFNPVSSKVVFESNEG---RSAGYGFVSFATKEEAEAAISSLDGKELMG 243 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~i~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~g~~i~g 243 (275)
.....++|||+|||..+++++|+ ++|++||.|..+.++.+..++ .++|||||+|.+.++|.+|++.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457899999999999999999 999999999999998887644 556999999999999999999999999999
Q ss_pred eeEEEEEcccCC
Q 044184 244 RPLRLKFGQKND 255 (275)
Q Consensus 244 ~~l~v~~a~~~~ 255 (275)
+.|.|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 223
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=121.08 Aligned_cols=85 Identities=27% Similarity=0.467 Sum_probs=78.4
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc--------
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL-------- 241 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i-------- 241 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|++.|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCeeEEEEEcccCC
Q 044184 242 MGRPLRLKFGQKND 255 (275)
Q Consensus 242 ~g~~l~v~~a~~~~ 255 (275)
.|+.|.|.|+.++.
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 58889999998653
No 224
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=122.24 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=76.8
Q ss_pred CCCCcEEEEecCCCCC------CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 044184 171 RETQHKLYVSNLSWKV------RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~ 244 (275)
....++|||+|||..+ ++++|+++|++||.|..+.++ ..+|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 789999999999999998887 46789999999999999999999999999999998
Q ss_pred -eEEEEEcccCCcc
Q 044184 245 -PLRLKFGQKNDDV 257 (275)
Q Consensus 245 -~l~v~~a~~~~~~ 257 (275)
.|.|.++...+..
T Consensus 90 ~~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 90 HTFRVNLFTDFDKY 103 (105)
T ss_dssp CEEEEECSCCCCCC
T ss_pred ceEEEEEcchHhhh
Confidence 9999999876543
No 225
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=121.88 Aligned_cols=81 Identities=28% Similarity=0.479 Sum_probs=71.7
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc--cccccceeee
Q 044184 75 QNIRRKLYVFNLPWS-FSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT--QEVSGRIIRV 151 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~i~v 151 (275)
..++++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|.+|+..|++ ..+.|++|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445799999999998 99999999999999999999974 579999999999999999998865 4589999999
Q ss_pred eehhccCCC
Q 044184 152 EFAKKFKKP 160 (275)
Q Consensus 152 ~~a~~~~~~ 160 (275)
.++......
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999765443
No 226
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=124.01 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=77.6
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|++||.+.. .++.+..+|.++|||||+|.+.++|.+|++ |||..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 445789999999999999999999999998887 777777889999999999999999999999 999999999999999
Q ss_pred cccCCcc
Q 044184 251 GQKNDDV 257 (275)
Q Consensus 251 a~~~~~~ 257 (275)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9886644
No 227
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=122.62 Aligned_cols=82 Identities=13% Similarity=0.372 Sum_probs=75.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++|||+|||..+++++|+++|+.||.|..|+++.+ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 4455789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+......
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9875543
No 228
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=9.2e-19 Score=125.65 Aligned_cols=82 Identities=27% Similarity=0.289 Sum_probs=74.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
....++|||+|||.++++++|+++|+.||.|.. .++.+. +|.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999887 556665 88999999999999999999998 999999999999999
Q ss_pred hhccC
Q 044184 154 AKKFK 158 (275)
Q Consensus 154 a~~~~ 158 (275)
+.+..
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97643
No 229
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=123.80 Aligned_cols=89 Identities=29% Similarity=0.455 Sum_probs=77.3
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999988554443333478999999999999999999999999999999999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876543
No 230
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=126.22 Aligned_cols=84 Identities=26% Similarity=0.444 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 168 APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
.....+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEEc
Q 044184 248 LKFG 251 (275)
Q Consensus 248 v~~a 251 (275)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 231
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=8.1e-18 Score=150.80 Aligned_cols=82 Identities=18% Similarity=0.421 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
.+.
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 232
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=120.06 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccccc-----ceee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG-----RIIR 150 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~i~ 150 (275)
...++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|.+|+..||+..+.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 34689999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred eeehhccCCC
Q 044184 151 VEFAKKFKKP 160 (275)
Q Consensus 151 v~~a~~~~~~ 160 (275)
|+++.+....
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999875443
No 233
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.6e-18 Score=117.42 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 80 KLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 80 ~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
+|||+|||.++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998 899999999999999999999984 899999999999875
No 234
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=120.35 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCcee-EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVS-SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
.......+|||+|||+.+++++|+++|++||.|.. +.++.+ .+|+++|||||+|.+.++|.+|++. ||..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999888877 777777 8899999999999999999999997 99999999999
Q ss_pred EEEcccCC
Q 044184 248 LKFGQKND 255 (275)
Q Consensus 248 v~~a~~~~ 255 (275)
|.++..++
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987654
No 235
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=123.55 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..+|||+|||+++++++|+++|+.| .|.+|.|+.+++|+++|||||+|.+.++|.+|+ .+++..+.|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4789999999999999999999999 899999999999999999999999999999999 5899999999999987754
No 236
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=118.65 Aligned_cols=83 Identities=23% Similarity=0.406 Sum_probs=74.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.....++|||+|||.++++++|+++|+.|+ .|.++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344579999999999999999999999874 67788887 89999999999999999999999999999999999999
Q ss_pred ehhccCC
Q 044184 153 FAKKFKK 159 (275)
Q Consensus 153 ~a~~~~~ 159 (275)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9986544
No 237
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.1e-18 Score=123.44 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=77.8
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCc-eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNP-VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
.....++|||+|||+.+++++|+++|+.||.| ..+.++.+. +|.++|||||+|.+.++|.+|++. ||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999998888 779999887 899999999999999999999996 999999999999
Q ss_pred EEcccCCc
Q 044184 249 KFGQKNDD 256 (275)
Q Consensus 249 ~~a~~~~~ 256 (275)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (114)
T 2cpy_A 89 HVVTLEDM 96 (114)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99987653
No 238
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=118.46 Aligned_cols=79 Identities=29% Similarity=0.464 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||..+++++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34689999999999999999999999999999999753 6899999999999999999999999999999999998
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 239
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=118.96 Aligned_cols=78 Identities=28% Similarity=0.382 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc--cceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS--GRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~i~v~~ 153 (275)
.+.++|||+|||.++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|.+|+..||+..+. |+.|.|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 34689999999999999999999999999999998753 689999999999999999999999999 99999999
Q ss_pred hhccC
Q 044184 154 AKKFK 158 (275)
Q Consensus 154 a~~~~ 158 (275)
+.+..
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98643
No 240
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=120.26 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||+.+++++|+++|++|| ++.+.++.++ +++++|||||+|.+.++|.+|++ +|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 455678999999999999999999999977 6699999986 89999999999999999999995 79999999999999
Q ss_pred EcccCC
Q 044184 250 FGQKND 255 (275)
Q Consensus 250 ~a~~~~ 255 (275)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 988765
No 241
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=120.97 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=73.5
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
......++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344457899999999999999999999999988766 3478899999999999999999999999999999999999
Q ss_pred ehhccC
Q 044184 153 FAKKFK 158 (275)
Q Consensus 153 ~a~~~~ 158 (275)
++.+..
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997644
No 242
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5e-17 Score=115.66 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999988886 566643 67899999999999999999999999999999999
Q ss_pred EEcccCCc
Q 044184 249 KFGQKNDD 256 (275)
Q Consensus 249 ~~a~~~~~ 256 (275)
.|++++..
T Consensus 89 ~~a~~~~~ 96 (97)
T 2e5j_A 89 ALARQQRD 96 (97)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99988653
No 243
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=6.6e-18 Score=124.08 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=76.4
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..+.++|||+|||..+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999998865 55699999999999999999999999999999999999
Q ss_pred cccCCcc
Q 044184 251 GQKNDDV 257 (275)
Q Consensus 251 a~~~~~~ 257 (275)
+.++...
T Consensus 82 a~~~~~~ 88 (115)
T 3lqv_A 82 YNANRAF 88 (115)
T ss_dssp CCHHHHT
T ss_pred ecCChhh
Confidence 9876544
No 244
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=115.41 Aligned_cols=76 Identities=21% Similarity=0.412 Sum_probs=70.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhc-Cccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQF-DTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~v~~ 153 (275)
....++|||+|||..+++++|+++|+.||.|.+|.+++ ++|||||+|.+.++|.+|+..| +|..+.|+.|.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34568999999999999999999999999999999986 4699999999999999999998 99999999999998
Q ss_pred hh
Q 044184 154 AK 155 (275)
Q Consensus 154 a~ 155 (275)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 245
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=118.77 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=71.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||.++++++|+++|+.||.|. +.++. +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34468999999999999999999999999997 66665 367899999999999999999999999999999999999
Q ss_pred hccC
Q 044184 155 KKFK 158 (275)
Q Consensus 155 ~~~~ 158 (275)
.+.+
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 246
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.3e-17 Score=121.12 Aligned_cols=78 Identities=23% Similarity=0.460 Sum_probs=71.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++|||+|||.++++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34457899999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred hhccC
Q 044184 154 AKKFK 158 (275)
Q Consensus 154 a~~~~ 158 (275)
+....
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98643
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=118.18 Aligned_cols=83 Identities=31% Similarity=0.494 Sum_probs=74.4
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568999999999999999999999997755 45555 678999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 044184 250 FGQKNDD 256 (275)
Q Consensus 250 ~a~~~~~ 256 (275)
|++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9988754
No 248
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.7e-18 Score=121.50 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=74.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHH----HhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIK----NLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 150 (275)
..+.++|||+|||.++++++|+ ++|+.||.|.+|.+.. +|.++|||||+|.+.++|..|+..|+|..+.|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999 9999999999998863 567889999999999999999999999999999999
Q ss_pred eeehhccC
Q 044184 151 VEFAKKFK 158 (275)
Q Consensus 151 v~~a~~~~ 158 (275)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998643
No 249
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=2e-17 Score=117.75 Aligned_cols=78 Identities=19% Similarity=0.486 Sum_probs=70.6
Q ss_pred cccCCCCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 73 QKQNIRRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
......++|||+|||. ++++++|+++|+.||.|.+|.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3444579999999998 9999999999999999999998 3789999999999999999999999999999999
Q ss_pred eehhcc
Q 044184 152 EFAKKF 157 (275)
Q Consensus 152 ~~a~~~ 157 (275)
+++...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998753
No 250
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=5.7e-18 Score=120.52 Aligned_cols=85 Identities=24% Similarity=0.435 Sum_probs=76.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHH----HHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLR----EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
..+.++|||+|||..+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999888763 57789999999999999999999999999999999
Q ss_pred EEEEcccCCccc
Q 044184 247 RLKFGQKNDDVS 258 (275)
Q Consensus 247 ~v~~a~~~~~~~ 258 (275)
.|.|++++.+..
T Consensus 82 ~v~~a~~~~~~~ 93 (97)
T 1nu4_A 82 RIQYAKTDSDII 93 (97)
T ss_dssp EEEECSSCCTHH
T ss_pred EEEEccCCCccc
Confidence 999999877543
No 251
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=8.3e-18 Score=138.33 Aligned_cols=80 Identities=20% Similarity=0.416 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCC--ceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCG--TVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
..++|||+|||+++++++|+++|+.|| .|.+|+|++|+ +|+++|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred hhc
Q 044184 154 AKK 156 (275)
Q Consensus 154 a~~ 156 (275)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 252
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=8.4e-18 Score=126.78 Aligned_cols=85 Identities=15% Similarity=0.364 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCC---ceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFN---PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~ 245 (275)
......++|||+|||+.+++++|+++|++||. |..+.++.++. |+++|||||+|.+.++|.+|++ +||..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999888 78899999876 9999999999999999999999 9999999999
Q ss_pred EEEEEcccCC
Q 044184 246 LRLKFGQKND 255 (275)
Q Consensus 246 l~v~~a~~~~ 255 (275)
|.|.++..++
T Consensus 117 i~V~~a~~~e 126 (136)
T 2hgl_A 117 IEVFKSHRTE 126 (136)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECChHH
Confidence 9999986543
No 253
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.2e-17 Score=119.70 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..++|||+|||.++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 46899999999999999999999999999999997 4679999999999999999999999999999999999864
No 254
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=115.90 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=72.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||.++++++|+++|+.||.|..|.++ ++||||+|.+.++|.+|+..|+|..+.|+.|.|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4457899999999999999999999999999999986 359999999999999999999999999999999999
Q ss_pred hccCCC
Q 044184 155 KKFKKP 160 (275)
Q Consensus 155 ~~~~~~ 160 (275)
.+....
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 865543
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=123.46 Aligned_cols=84 Identities=14% Similarity=0.315 Sum_probs=76.8
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCC---ceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFN---PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
.....++|||+|||+.+++++|+++|+.||. |..+.++.+.. |+++|||||+|.+.++|.+|++ +||..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999887 78999998866 9999999999999999999999 99999999999
Q ss_pred EEEEcccCC
Q 044184 247 RLKFGQKND 255 (275)
Q Consensus 247 ~v~~a~~~~ 255 (275)
.|.++..++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 256
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=114.35 Aligned_cols=80 Identities=23% Similarity=0.405 Sum_probs=73.8
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999988887 6899999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99987654
No 257
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-17 Score=117.86 Aligned_cols=79 Identities=20% Similarity=0.458 Sum_probs=71.2
Q ss_pred cCCCCeEEEcCCCC-CCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 75 QNIRRKLYVFNLPW-SFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 75 ~~~~~~l~v~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
..+.++|||+|||. .+++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34578999999998 99999999999999999999984 68999999999999999999999999999999999
Q ss_pred hhccCCC
Q 044184 154 AKKFKKP 160 (275)
Q Consensus 154 a~~~~~~ 160 (275)
+......
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9865543
No 258
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.4e-17 Score=115.93 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccC--CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPC--GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
...++|||+|||..+++++|+++|+.| |.|..|++. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457899999999999999999999999 899999873 67999999999999999999999999999999999
Q ss_pred hhccCC
Q 044184 154 AKKFKK 159 (275)
Q Consensus 154 a~~~~~ 159 (275)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987554
No 259
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=120.42 Aligned_cols=81 Identities=15% Similarity=0.287 Sum_probs=73.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
.....+|||+|||+.+++++|+++|++| +|..+.++.++. |+++|||||+|.+.++|.+|+ .+||..|+||.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3345799999999999999999999997 899999999865 899999999999999999999 5999999999999998
Q ss_pred cccC
Q 044184 251 GQKN 254 (275)
Q Consensus 251 a~~~ 254 (275)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8654
No 260
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.3e-18 Score=124.90 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=73.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCce----eEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTV----VDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 150 (275)
.....+|||+|||+++|+++|+++|+.||.| ..|.|+.+.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3456899999999999999999999999975 689999999999999999999999999999996 99999999999
Q ss_pred eeehh
Q 044184 151 VEFAK 155 (275)
Q Consensus 151 v~~a~ 155 (275)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98765
No 261
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=115.78 Aligned_cols=78 Identities=31% Similarity=0.555 Sum_probs=71.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||.++++++|+++|+.||.|..|+++ ++||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3457899999999999999999999999999999996 359999999999999999999999999999999999
Q ss_pred hccCC
Q 044184 155 KKFKK 159 (275)
Q Consensus 155 ~~~~~ 159 (275)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 262
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=3.4e-17 Score=117.83 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..++|||+|||..+++++|+++|+.||.|..|.++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 46899999999999999999999999999999985 46999999999999999999999999999999999987
Q ss_pred cCCCC
Q 044184 157 FKKPR 161 (275)
Q Consensus 157 ~~~~~ 161 (275)
.....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 65443
No 263
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=8.2e-18 Score=122.33 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCC-ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCG-TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....+|||+|||+++++++|+++|+.|| .|..+.+.. ++++|||||+|.+.++|.+|+..|||..+.|+.|.|+++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999 899998853 347899999999999999999999999999999999998
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 753
No 264
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=5.2e-17 Score=116.85 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=75.4
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.++ ++||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999998876 5599999999999999999999999999999999
Q ss_pred EcccCCcccccc
Q 044184 250 FGQKNDDVSESN 261 (275)
Q Consensus 250 ~a~~~~~~~~~~ 261 (275)
|++++....+..
T Consensus 79 ~a~~~~~~~~~~ 90 (103)
T 2dgu_A 79 FAKPPDQKRKER 90 (103)
T ss_dssp ECCCCCCCCCCC
T ss_pred EcCCCcccchhh
Confidence 999887655443
No 265
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=119.62 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCC-CCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCeeEE
Q 044184 171 RETQHKLYVSNLSWK-VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG--KELMGRPLR 247 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~i~g~~l~ 247 (275)
..+.++|||+|||+. +++++|+++|++||.|.++.++. ++|||||+|.+.++|.+|++.|++ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556889999999998 99999999999999999998873 489999999999999999998864 569999999
Q ss_pred EEEcccCCcc
Q 044184 248 LKFGQKNDDV 257 (275)
Q Consensus 248 v~~a~~~~~~ 257 (275)
|.|++.+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876654
No 266
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=120.90 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..++|||+|||..+++++|+++|+.||.|..|.|.. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 468999999999999999999999999999998864 578999999999999999999999999999999999875
Q ss_pred c
Q 044184 157 F 157 (275)
Q Consensus 157 ~ 157 (275)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 267
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=115.02 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=73.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC--CeeEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM--GRPLR 247 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~--g~~l~ 247 (275)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|||..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999888743 789999999999999999999999999 99999
Q ss_pred EEEcccCC
Q 044184 248 LKFGQKND 255 (275)
Q Consensus 248 v~~a~~~~ 255 (275)
|.|++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998865
No 268
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=127.80 Aligned_cols=88 Identities=24% Similarity=0.451 Sum_probs=74.7
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEE--E---eeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK--V---VFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~--i---~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~ 245 (275)
..+.++|||+|||..+++++|+++|++||.|..+. + +....+|.++|||||.|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45578999999999999999999999999887641 1 112246889999999999999999999999999999999
Q ss_pred EEEEEcccCCccc
Q 044184 246 LRLKFGQKNDDVS 258 (275)
Q Consensus 246 l~v~~a~~~~~~~ 258 (275)
|.|.|+++.....
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998865443
No 269
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=118.49 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=75.5
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 445789999999999999999999999999999988864 88999999999999999999999999999999999
Q ss_pred cccCCccc
Q 044184 251 GQKNDDVS 258 (275)
Q Consensus 251 a~~~~~~~ 258 (275)
++++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99877543
No 270
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=115.91 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=74.7
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999888743 7999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99887643
No 271
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=7.3e-17 Score=114.80 Aligned_cols=80 Identities=20% Similarity=0.361 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEecCCC-CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 168 APARETQHKLYVSNLSW-KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
.....+.++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566789999999998 99999999999999999988873 7899999999999999999999999999999
Q ss_pred EEEEcccCC
Q 044184 247 RLKFGQKND 255 (275)
Q Consensus 247 ~v~~a~~~~ 255 (275)
.|.|++.+.
T Consensus 88 ~V~~a~~~~ 96 (97)
T 2xnq_A 88 ILEVSSSNA 96 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999998754
No 272
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6e-19 Score=129.92 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=79.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeE--------EEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD--------VEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
..+.++|||+|||..+++++|+++|+.||.|.. |+++.++ ++.++|||||+|.+.++|.+|+..|+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 9999997 8999999999999999999999999999999
Q ss_pred cceeeeeehhccCCC
Q 044184 146 GRIIRVEFAKKFKKP 160 (275)
Q Consensus 146 g~~i~v~~a~~~~~~ 160 (275)
|+.|.|.++.+....
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999865443
No 273
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=8e-18 Score=113.89 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=71.6
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
+|||+|||..+++++|+++|++||.+..+.++.++.+|.++|||||+|.+.++|.+|++ ++|..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 5999999999999886
No 274
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=6.1e-18 Score=127.97 Aligned_cols=81 Identities=26% Similarity=0.274 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|||+++++++|+++|+.|| |.+|+|+.+++|+++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4468999999999999999999999999 67999999999999999999999999999999 689999999999999887
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 275
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.9e-17 Score=122.95 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=72.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcee--EEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVV--DVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
....++|||+|||+++++++|+++|+.| .|. +|+|+.|++|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3456899999999999999999999999 566 89999999999999999999999999999985 7888999999998
Q ss_pred ehhc
Q 044184 153 FAKK 156 (275)
Q Consensus 153 ~a~~ 156 (275)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-17 Score=116.48 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-----e
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG-----R 244 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g-----~ 244 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.|||..|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999998864 899999999999999999999999999 9
Q ss_pred eEEEEEcccCCcc
Q 044184 245 PLRLKFGQKNDDV 257 (275)
Q Consensus 245 ~l~v~~a~~~~~~ 257 (275)
.|.|.+++++...
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999986543
No 277
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=9.9e-18 Score=115.24 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=67.2
Q ss_pred CcEEEEecCCCCC------CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe-eE
Q 044184 174 QHKLYVSNLSWKV------RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGR-PL 246 (275)
Q Consensus 174 ~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~-~l 246 (275)
.++|||+|||..+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|.+|++.|||..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999998876 46789999999999999999999999999999999 88
Q ss_pred EE
Q 044184 247 RL 248 (275)
Q Consensus 247 ~v 248 (275)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 278
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=5.2e-17 Score=117.89 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
......++|||+|||..+++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345667899999999999999999999999999998887 789999999999999999999999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.|++++..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999887643
No 279
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.5e-17 Score=111.77 Aligned_cols=77 Identities=30% Similarity=0.380 Sum_probs=71.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCeeEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSL-DGKELMGRPLRL 248 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~i~g~~l~v 248 (275)
.....++|||+|||..+++++|+++|++||.|..+.++. ++|||||+|.+.++|.+|++.| +|..+.|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 345678999999999999999999999999999998885 3799999999999999999999 999999999999
Q ss_pred EEcc
Q 044184 249 KFGQ 252 (275)
Q Consensus 249 ~~a~ 252 (275)
.|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 280
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=120.73 Aligned_cols=84 Identities=12% Similarity=0.221 Sum_probs=77.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCC---ceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFN---PVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
.....++|||+|||+.+++++|+++|+.||. |..+.++.+.. |.++|||||+|.+.++|.+|++ +||..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999777 78999998876 9999999999999999999999 99999999999
Q ss_pred EEEEcccCC
Q 044184 247 RLKFGQKND 255 (275)
Q Consensus 247 ~v~~a~~~~ 255 (275)
.|.++.+++
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 281
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.9e-17 Score=117.05 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3446899999999999999999999999999998887 4589999999999999999999999999999999999
Q ss_pred cccC
Q 044184 251 GQKN 254 (275)
Q Consensus 251 a~~~ 254 (275)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9864
No 282
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=9.3e-18 Score=120.58 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..++|||+|||.++++++|+++|+.||.|.+|.++.+++|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 3589999999999999999999999999999999999999999999999999999999998 88899999999998875
Q ss_pred cC
Q 044184 157 FK 158 (275)
Q Consensus 157 ~~ 158 (275)
..
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 283
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=112.17 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=73.5
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++ ++||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45667899999999999999999999999999998887 4499999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99887654
No 284
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=117.26 Aligned_cols=78 Identities=27% Similarity=0.373 Sum_probs=73.0
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~ 254 (275)
++|||+|||..+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999998865 7899999999999999999999999999999999999987
Q ss_pred Ccc
Q 044184 255 DDV 257 (275)
Q Consensus 255 ~~~ 257 (275)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 285
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=112.44 Aligned_cols=80 Identities=29% Similarity=0.503 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++ ++||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999998887 3499999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99887543
No 286
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=5.6e-17 Score=118.12 Aligned_cols=76 Identities=21% Similarity=0.419 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWS-FSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||.. +++++|+++|+.||.|..|.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3589999999999 999999999999999999998 57899999999999999999999999999999999997
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
..+.
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 287
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=2.5e-17 Score=135.42 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=77.9
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcC--CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANF--NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..++|||+||++.+++++|+++|++|| .|+.+.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 044184 251 GQKND 255 (275)
Q Consensus 251 a~~~~ 255 (275)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 288
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4.4e-17 Score=118.47 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcC-CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...+|||+|||+.+++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 467999999999999999999999998 788877753 247899999999999999999999999999999999999
Q ss_pred ccCC
Q 044184 252 QKND 255 (275)
Q Consensus 252 ~~~~ 255 (275)
+...
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
No 289
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=8.8e-17 Score=117.08 Aligned_cols=78 Identities=22% Similarity=0.454 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCC-CCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 171 RETQHKLYVSNLSWK-VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
....++|||+|||.. +++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344689999999999 999999999999999999888 48999999999999999999999999999999999
Q ss_pred EcccCCc
Q 044184 250 FGQKNDD 256 (275)
Q Consensus 250 ~a~~~~~ 256 (275)
|++.+..
T Consensus 96 ~a~~~~~ 102 (110)
T 1wf1_A 96 MAGEPKP 102 (110)
T ss_dssp ESCCCCS
T ss_pred ECCCCCC
Confidence 9986543
No 290
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=4.3e-17 Score=125.47 Aligned_cols=80 Identities=28% Similarity=0.395 Sum_probs=74.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeee
Q 044184 74 KQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEF 153 (275)
Q Consensus 74 ~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 153 (275)
.....++|||+|||+++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3445799999999999999999999999999999999876 589999999999999999999999999999999999
Q ss_pred hhcc
Q 044184 154 AKKF 157 (275)
Q Consensus 154 a~~~ 157 (275)
+.+.
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 291
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=4.3e-17 Score=127.89 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=91.4
Q ss_pred ccccCCcchhhhhccccccccccCCcchh------cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CC
Q 044184 44 SYNFPTRNLCLQVCSTLQDTTVETKPEQT------QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GG 116 (275)
Q Consensus 44 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~ 116 (275)
.-.|.+.+.+..+. .++.....+.+... ......++|||+|||..+++++|+++|+.||.|..+.+..++ +|
T Consensus 55 fV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 133 (172)
T 2g4b_A 55 FLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 133 (172)
T ss_dssp EEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC
T ss_pred EEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34567777777776 55554443333222 222346899999999999999999999999999999999997 99
Q ss_pred CCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 117 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
.++|||||+|.+.++|.+|+..|||..+.|+.|.|.||
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 134 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp SEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999999999999999986
No 292
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=115.87 Aligned_cols=82 Identities=23% Similarity=0.465 Sum_probs=73.3
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999998766544 3568899999999999999999999999999999999999
Q ss_pred EcccCCc
Q 044184 250 FGQKNDD 256 (275)
Q Consensus 250 ~a~~~~~ 256 (275)
|+.++..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9988654
No 293
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=8.4e-18 Score=127.20 Aligned_cols=124 Identities=22% Similarity=0.246 Sum_probs=74.8
Q ss_pred ceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcC
Q 044184 120 NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANF 199 (275)
Q Consensus 120 g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 199 (275)
|+||.+|...+.+..++..+... ..|....-.. ............++|||+|||+.+++++|+++|++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~---------g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G 71 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS---------GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN 71 (139)
T ss_dssp -----------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC---------CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 57788877777666555533222 1221111000 0011122345568999999999999999999999977
Q ss_pred CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 200 NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 200 ~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
++.+.++.++. |+++|||||+|.+.++|.+|+ .+|+..|.|+.|.|.++..+..
T Consensus 72 -i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 72 -PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp -CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred -CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 88999998865 999999999999999999999 6899999999999999887654
No 294
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=4.2e-17 Score=128.84 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=78.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
....++|||+|||..+++++|+++|+.||.|..|.|..+.++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcc
Q 044184 155 KKF 157 (275)
Q Consensus 155 ~~~ 157 (275)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 753
No 295
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.4e-17 Score=113.28 Aligned_cols=81 Identities=30% Similarity=0.515 Sum_probs=70.9
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccCCeeEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG-KELMGRPLRLK 249 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g-~~i~g~~l~v~ 249 (275)
....++|||+|||..+++++|+++|++||.++...++. ++|||||+|.+.++|.+|++.||| ..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34568999999999999999999999999855444442 488999999999999999999999 99999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99987654
No 296
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=112.24 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||.++++++|+++|+.||.|.+| +.++ +|. ||||+|.+.++|.+|+. |+|..+.|+.|.|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45899999999999999999999999999987 4444 554 99999999999999999 99999999999999886
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 297
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.6e-17 Score=125.20 Aligned_cols=111 Identities=20% Similarity=0.342 Sum_probs=91.3
Q ss_pred cccCCcchhhhhccccccccccCCc--------chhcccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-C
Q 044184 45 YNFPTRNLCLQVCSTLQDTTVETKP--------EQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-G 115 (275)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~ 115 (275)
-.|.+.+.+..+...++.....+.+ .........++|||+|||..+++++|+++|+.||.|.++.++.+. +
T Consensus 46 V~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 125 (166)
T 3md3_A 46 VEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT 125 (166)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT
T ss_pred EEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC
Confidence 3466666666666555444332222 112344557899999999999999999999999999999999997 8
Q ss_pred CCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 116 GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 116 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|++
T Consensus 126 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 126 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999999999999999999999985
No 298
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=115.77 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc-eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc-cccccceeeeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGT-VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT-QEVSGRIIRVEF 153 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~i~v~~ 153 (275)
...++|||+|||.++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|+..||| ..+.|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 34689999999999999999999999999 6666663 578999999999999999999999 899999999999
Q ss_pred hhccCC
Q 044184 154 AKKFKK 159 (275)
Q Consensus 154 a~~~~~ 159 (275)
+.+...
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 986543
No 299
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.1e-16 Score=130.19 Aligned_cols=116 Identities=16% Similarity=0.324 Sum_probs=94.0
Q ss_pred cccCCcchhhhhccccccccccCCcchh-----------------cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeE
Q 044184 45 YNFPTRNLCLQVCSTLQDTTVETKPEQT-----------------QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVD 107 (275)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~ 107 (275)
-.|.+.+.+..+...++.......+... ......++|||+|||..+++++|+++|+.||.|..
T Consensus 75 V~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 154 (216)
T 2qfj_A 75 VEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS 154 (216)
T ss_dssp EEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEE
T ss_pred EEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeE
Confidence 4466666666666555544333322211 12345689999999999999999999999999999
Q ss_pred EEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccCCC
Q 044184 108 VEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP 160 (275)
Q Consensus 108 v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 160 (275)
|+++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.....+
T Consensus 155 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 155 ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999998 8999999999999999999999999999999999999999875443
No 300
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.9e-17 Score=120.00 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=70.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcC----HHH----HHHHHH--hcCccc
Q 044184 79 RKLYVFNL----PWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMAS----PEE----AQAAVN--QFDTQE 143 (275)
Q Consensus 79 ~~l~v~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~----~~~----A~~a~~--~l~~~~ 143 (275)
..|||+|| |+.+++.+|+++|+.||.|.+|.++.|+ ||+++|||||+|.+ .+. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999 99999999999996 333 788988 789999
Q ss_pred cccceeeeeehh
Q 044184 144 VSGRIIRVEFAK 155 (275)
Q Consensus 144 ~~g~~i~v~~a~ 155 (275)
++|++|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999755
No 301
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=112.16 Aligned_cols=80 Identities=26% Similarity=0.412 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEecCCCCCCHhHHHHHHhhc--CCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 169 PARETQHKLYVSNLSWKVRSTHLREFFSAN--FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 169 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
....+.++|||+|||..+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345667899999999999999999999999 777777654 6799999999999999999999999999999
Q ss_pred EEEEcccCCc
Q 044184 247 RLKFGQKNDD 256 (275)
Q Consensus 247 ~v~~a~~~~~ 256 (275)
.|.|++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999988764
No 302
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=118.35 Aligned_cols=78 Identities=18% Similarity=0.090 Sum_probs=71.2
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
..++|||+|||..+++++|+++|++||.|..+.++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999998887763 57899999999999999999999999999999999998
Q ss_pred cCCc
Q 044184 253 KNDD 256 (275)
Q Consensus 253 ~~~~ 256 (275)
...-
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7543
No 303
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.6e-17 Score=114.21 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=71.6
Q ss_pred CCCCCcEEEEecCCC-CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 170 ARETQHKLYVSNLSW-KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
...+.++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345688999999998 99999999999999999998884 789999999999999999999999999999999
Q ss_pred EEcccCCccc
Q 044184 249 KFGQKNDDVS 258 (275)
Q Consensus 249 ~~a~~~~~~~ 258 (275)
.|++++....
T Consensus 78 ~~a~~~~~~~ 87 (96)
T 2kvi_A 78 EVSSSNARPQ 87 (96)
T ss_dssp EEEECCCC--
T ss_pred EEcCcCCCCC
Confidence 9998876543
No 304
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-17 Score=118.44 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=70.0
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccc-----ccce
Q 044184 76 NIRRKLYV--FNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV-----SGRI 148 (275)
Q Consensus 76 ~~~~~l~v--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-----~g~~ 148 (275)
.+.++||| +||+.++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|.+|++.|||..+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 34688999 77999999999999999999999998763 368999999999999999999999987 6889
Q ss_pred eeeeehhccCC
Q 044184 149 IRVEFAKKFKK 159 (275)
Q Consensus 149 i~v~~a~~~~~ 159 (275)
|.|.++.....
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999875443
No 305
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-18 Score=127.34 Aligned_cols=87 Identities=24% Similarity=0.411 Sum_probs=80.7
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCcee--------EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVS--------SKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
..+.++|||+|||..+++++|+++|++||.|.. +.++.++.++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999988 889988888999999999999999999999999999999
Q ss_pred CeeEEEEEcccCCcc
Q 044184 243 GRPLRLKFGQKNDDV 257 (275)
Q Consensus 243 g~~l~v~~a~~~~~~ 257 (275)
|+.|.|.|++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887654
No 306
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=2.7e-17 Score=122.13 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=73.9
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCce--eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPV--SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
.....++|||+|||+.+++++|+++|++| +++ .+.++.++. |+++|||||+|.+.++|.+|++ +++..|+||.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999997 888 888888866 9999999999999999999999 588999999999
Q ss_pred EEEcccC
Q 044184 248 LKFGQKN 254 (275)
Q Consensus 248 v~~a~~~ 254 (275)
|.++..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 307
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=109.64 Aligned_cols=78 Identities=24% Similarity=0.374 Sum_probs=68.5
Q ss_pred CCCcE-EEEecCCCCCCHhH----HHHHHhhcC-CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 044184 172 ETQHK-LYVSNLSWKVRSTH----LREFFSANF-NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245 (275)
Q Consensus 172 ~~~~~-l~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~ 245 (275)
++..+ |||+|||+.+++++ |+++|++|| .|+++ ++ |+|||.|.+.++|.+|++.|+|..+.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999988 558999995 78887 23 89999999999999999999999999999
Q ss_pred EEEEEcccCCcccc
Q 044184 246 LRLKFGQKNDDVSE 259 (275)
Q Consensus 246 l~v~~a~~~~~~~~ 259 (275)
|+|+||+.+.+.-.
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99999999987643
No 308
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=112.34 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=73.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEE-EeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK-VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~-i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
.....++|||+|||..+++++|+++|++||.|..++ ++.++.++ .|||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 344578999999999999999999999999999994 77665444 3999999999999999999999999999999
Q ss_pred EEcccCC
Q 044184 249 KFGQKND 255 (275)
Q Consensus 249 ~~a~~~~ 255 (275)
.|+.+++
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9999874
No 309
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=2.2e-16 Score=121.59 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLK 249 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g--~~l~v~ 249 (275)
....+|||+||++.+++++|+++|++||.|.++.+..+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 44567999999999999999999999999999988643 357899999999999999999999999965 999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|++++...-
T Consensus 120 ~Ak~~~l~v 128 (164)
T 1sjr_A 120 FSKLTSLNV 128 (164)
T ss_dssp ECSSSSCCC
T ss_pred EecCCcccc
Confidence 999876443
No 310
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=3.3e-17 Score=117.64 Aligned_cols=84 Identities=23% Similarity=0.444 Sum_probs=76.7
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++ +|..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999997 89999999999999999999999 999999999999999
Q ss_pred ccCCccc
Q 044184 252 QKNDDVS 258 (275)
Q Consensus 252 ~~~~~~~ 258 (275)
..+....
T Consensus 84 ~~~~~~~ 90 (102)
T 2xs2_A 84 IRKQNLS 90 (102)
T ss_dssp EECC---
T ss_pred CcCcchh
Confidence 8876543
No 311
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2.5e-16 Score=122.66 Aligned_cols=83 Identities=27% Similarity=0.483 Sum_probs=79.0
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
.++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCc
Q 044184 254 NDD 256 (275)
Q Consensus 254 ~~~ 256 (275)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 312
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.9e-16 Score=128.94 Aligned_cols=86 Identities=28% Similarity=0.421 Sum_probs=79.5
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
..+.++|||+|||..+++++|+++|++||.|+++.++.+..++.++|||||+|.+.++|.+|++.+||..+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCc
Q 044184 251 GQKNDD 256 (275)
Q Consensus 251 a~~~~~ 256 (275)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 877654
No 313
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=5.2e-16 Score=114.70 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=69.9
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEE
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGY-GFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 250 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~i~g--~~l~v~~ 250 (275)
...|||+||++.+++++|+++|++||.|.++.++.. .|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 344689999999999999999999999999988642 275 9999999999999999999999987 6999999
Q ss_pred cccCCcccc
Q 044184 251 GQKNDDVSE 259 (275)
Q Consensus 251 a~~~~~~~~ 259 (275)
|+++...-+
T Consensus 99 Ak~~~l~v~ 107 (124)
T 2e5i_A 99 ARPTRLNVI 107 (124)
T ss_dssp CSCSCCCCS
T ss_pred ecCCcceee
Confidence 998875433
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=125.15 Aligned_cols=86 Identities=30% Similarity=0.431 Sum_probs=80.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|+.+.++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 044184 250 FGQKNDD 256 (275)
Q Consensus 250 ~a~~~~~ 256 (275)
|+.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987644
No 315
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=2e-16 Score=123.52 Aligned_cols=84 Identities=21% Similarity=0.401 Sum_probs=79.8
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCCc
Q 044184 253 KNDD 256 (275)
Q Consensus 253 ~~~~ 256 (275)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 316
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=111.37 Aligned_cols=77 Identities=27% Similarity=0.459 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|+ ++++++|+++|+.||.|.+|.|. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 34689999996 89999999999999999999984 578999999999999999999999999999999999998
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
+...
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6544
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.5e-17 Score=124.93 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=73.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEE------EEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccce
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDV------EIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRI 148 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v------~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 148 (275)
..+.++|||+|||+.+++++|+++|+.||.|..+ .+....+|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4557899999999999999999999999998764 1222247899999999999999999999999999999999
Q ss_pred eeeeehhccC
Q 044184 149 IRVEFAKKFK 158 (275)
Q Consensus 149 i~v~~a~~~~ 158 (275)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 318
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=9.3e-17 Score=112.14 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..++|||+|||+.+++++|+++|++| .|.++++. +++|||||+|.+.++|.+|+..|+|..+.|+.|.|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 99999884 5789999999999999999999999999999999999865
No 319
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.8e-16 Score=116.32 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=71.9
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456789999996 69999999999999999998885 568999999999999999999999999999999999
Q ss_pred EcccCCccc
Q 044184 250 FGQKNDDVS 258 (275)
Q Consensus 250 ~a~~~~~~~ 258 (275)
|++++....
T Consensus 107 ~a~~~~~~~ 115 (121)
T 2bz2_A 107 IARKQPMLD 115 (121)
T ss_dssp ECCSSCC--
T ss_pred EeCCCCCCC
Confidence 999876543
No 320
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.9e-16 Score=110.49 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
..++|||+|||..+++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999998 88888773 579999999999999999999999999999999999997
Q ss_pred cCC
Q 044184 253 KND 255 (275)
Q Consensus 253 ~~~ 255 (275)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 321
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=113.71 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEE-EEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDV-EIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||+++++++|+++|+.||.|.+| .++.++. .|.|||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46899999999999999999999999999999 4777762 2349999999999999999999999999999999998
Q ss_pred cc
Q 044184 156 KF 157 (275)
Q Consensus 156 ~~ 157 (275)
+.
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 322
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=120.21 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCc----eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNP----VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
....+|||+|||+.+++++|+++|++||.| ..+.++.+ .+|+++|||||+|.+.++|.+|++. |+..|+||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999998765 57888887 5899999999999999999999995 99999999999
Q ss_pred EEEcccCC
Q 044184 248 LKFGQKND 255 (275)
Q Consensus 248 v~~a~~~~ 255 (275)
|..+..++
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 323
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=4.7e-16 Score=115.47 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCC--eeEEE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGY-GFVSFATKEEAEAAISSLDGKELMG--RPLRL 248 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~i~g--~~l~v 248 (275)
.....|||+||++.+++++|+++|++||.|.++.+..+ .+|+ |||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 44567889999999999999999999999999988754 2577 9999999999999999999999988 99999
Q ss_pred EEcccCCcccccc
Q 044184 249 KFGQKNDDVSESN 261 (275)
Q Consensus 249 ~~a~~~~~~~~~~ 261 (275)
.|++++.-.-+.+
T Consensus 101 ~~ak~~~l~v~~n 113 (130)
T 3zzy_A 101 DFSKLTSLNVKYN 113 (130)
T ss_dssp EECSCSSCCCCCC
T ss_pred EecCCCceeEEec
Confidence 9999886544443
No 324
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-16 Score=115.87 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=72.9
Q ss_pred cEEEEecC----CCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 044184 175 HKLYVSNL----SWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT----KEE----AEAAIS--SLDGKE 240 (275)
Q Consensus 175 ~~l~v~nl----~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~g~~ 240 (275)
..|||+|| |+.+++++|+++|+.||.|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred cCCeeEEEEEcccC
Q 044184 241 LMGRPLRLKFGQKN 254 (275)
Q Consensus 241 i~g~~l~v~~a~~~ 254 (275)
|.|+.|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987654
No 325
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=3.1e-16 Score=120.80 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccccc--ceeeeeehh
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFAK 155 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~a~ 155 (275)
..+|||+||++.+++++|+++|++||.|.+|.|..+. ++|||||+|.+.++|.+|++.|+|..+.| +.|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4678999999999999999999999999999987543 57899999999999999999999999965 999999998
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
+..
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 326
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=2.2e-16 Score=126.61 Aligned_cols=83 Identities=17% Similarity=0.313 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeeh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA 154 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a 154 (275)
...++|||+|||..+++++|+++|+.||.|..|.+..++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred hccC
Q 044184 155 KKFK 158 (275)
Q Consensus 155 ~~~~ 158 (275)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 327
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=107.13 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=65.9
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHhhccC-CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 78 RRK-LYVFNLPWSFSVAE----IKNLFAPC-GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 78 ~~~-l~v~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
+.+ |||+|||.++++++ |+++|+.| |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||+|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 445 99999999999988 55899999 499988 33 99999999999999999999999999999999
Q ss_pred eehhccCCC
Q 044184 152 EFAKKFKKP 160 (275)
Q Consensus 152 ~~a~~~~~~ 160 (275)
.+++..+..
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999876543
No 328
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=5.2e-16 Score=115.23 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcce-EEEEEcCHHHHHHHHHhcCcccccc--ceeeeeeh
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF-AFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFA 154 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~a 154 (275)
-..|||+||++.+|+++|+++|++||.|.+|++..+ .+|+ |||+|.+.++|.+|++.|||..+.| +.|+|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 356789999999999999999999999999988764 3577 9999999999999999999999988 89999999
Q ss_pred hccC
Q 044184 155 KKFK 158 (275)
Q Consensus 155 ~~~~ 158 (275)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8654
No 329
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=110.32 Aligned_cols=81 Identities=23% Similarity=0.325 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 250 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~ 250 (275)
....++|||+|||..+++++|+++|++||.|..+ +.+..++. ||||+|.+.++|.+|++ |||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3446799999999999999999999999998876 66655654 99999999999999999 999999999999999
Q ss_pred cccCCcc
Q 044184 251 GQKNDDV 257 (275)
Q Consensus 251 a~~~~~~ 257 (275)
+.++...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8776543
No 330
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=3.2e-16 Score=123.07 Aligned_cols=79 Identities=24% Similarity=0.408 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc---cceeeeee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS---GRIIRVEF 153 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i~v~~ 153 (275)
..++|||+|||..+++++|+++|+.||.|.+|.++++.+|.++|||||+|.+.++|.+|+..|||..+. +++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999999998765 49999998
Q ss_pred hh
Q 044184 154 AK 155 (275)
Q Consensus 154 a~ 155 (275)
++
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=108.83 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=71.8
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
...+.++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999888874 568999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
|++++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99887654
No 332
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=8.5e-16 Score=113.58 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcce-EEEEEcCHHHHHHHHHhcCcccccc--ceeeeeehh
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNF-AFVTMASPEEAQAAVNQFDTQEVSG--RIIRVEFAK 155 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~a~ 155 (275)
..|||+||++.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|..|+..|||..+.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34689999999999999999999999999998652 286 9999999999999999999999987 689999998
Q ss_pred ccC
Q 044184 156 KFK 158 (275)
Q Consensus 156 ~~~ 158 (275)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 333
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=114.18 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-C---CCCcceEEEEEcCHHHHHHHHHhcCccccccceeee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-G---GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV 151 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 151 (275)
...++|||+|||+++++++|+++|+.||.|. +.++.+. + |+++|||||+|.+.++|.+|+..|++ ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3468999999999999999999999999999 8888777 5 79999999999999999999998843 56666655
Q ss_pred ee
Q 044184 152 EF 153 (275)
Q Consensus 152 ~~ 153 (275)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 53
No 334
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=6.4e-16 Score=111.30 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=73.1
Q ss_pred cCCCCeEEEcCCCC-----CCCHHHHHHhhccCCceeEEEEEeCC--CCCCcceEEEEEcCHHHHHHHHHhcCccccccc
Q 044184 75 QNIRRKLYVFNLPW-----SFSVAEIKNLFAPCGTVVDVEIIKHK--GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR 147 (275)
Q Consensus 75 ~~~~~~l~v~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 147 (275)
..++++|+|+||.. +-++++|++.|++||.|.+|.|++++ +++++|+|||+|.+.++|.+|+..|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34578999999963 23789999999999999999999987 368999999999999999999999999999999
Q ss_pred eeeeeehhc
Q 044184 148 IIRVEFAKK 156 (275)
Q Consensus 148 ~i~v~~a~~ 156 (275)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=113.73 Aligned_cols=80 Identities=24% Similarity=0.211 Sum_probs=70.3
Q ss_pred CCCCcEEEE--ecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-----CC
Q 044184 171 RETQHKLYV--SNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL-----MG 243 (275)
Q Consensus 171 ~~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i-----~g 243 (275)
..+.++||| +||++.+++++|+++|++||.|..+.++. .+|||||+|.+.++|.+|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445788999 77999999999999999999888876652 378999999999999999999999988 68
Q ss_pred eeEEEEEcccCCc
Q 044184 244 RPLRLKFGQKNDD 256 (275)
Q Consensus 244 ~~l~v~~a~~~~~ 256 (275)
+.|.|.|++....
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 9999999986543
No 336
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=1.8e-16 Score=123.71 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-CCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
..++|||+|||..+++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999997 89999999999999999999998 89999999999999987
Q ss_pred c
Q 044184 156 K 156 (275)
Q Consensus 156 ~ 156 (275)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=5.1e-16 Score=124.32 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..++|||+|||+.+++++|+++|+.||.|.+|+|.++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 458999999999999999999999999999999999999999999999999999999999864 5689999999998875
Q ss_pred c
Q 044184 157 F 157 (275)
Q Consensus 157 ~ 157 (275)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 338
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=110.00 Aligned_cols=75 Identities=29% Similarity=0.393 Sum_probs=62.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc--cccceeeee
Q 044184 75 QNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE--VSGRIIRVE 152 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~ 152 (275)
..+..+|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 345689999999999999999999999999999999874 78999999999999984 34444 569999999
Q ss_pred ehhcc
Q 044184 153 FAKKF 157 (275)
Q Consensus 153 ~a~~~ 157 (275)
++.+.
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98754
No 339
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=3.1e-16 Score=115.10 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccce-----eee
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRI-----IRV 151 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-----i~v 151 (275)
..++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|.+|+..|||..+.|+. |.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4689999999999999999999999999999999765 89999999999999999999999999998 555
Q ss_pred eehhc
Q 044184 152 EFAKK 156 (275)
Q Consensus 152 ~~a~~ 156 (275)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 55443
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=109.51 Aligned_cols=77 Identities=26% Similarity=0.326 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
..++|||+|||.++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++|.. ....+.|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999764 68999999999999986543 24456899999999876
Q ss_pred cCC
Q 044184 157 FKK 159 (275)
Q Consensus 157 ~~~ 159 (275)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 341
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.7e-15 Score=109.02 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCC-----CCCHhHHHHHHhhcCCceeEEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 044184 171 RETQHKLYVSNLSW-----KVRSTHLREFFSANFNPVSSKVVFESNE-GRSAGYGFVSFATKEEAEAAISSLDGKELMGR 244 (275)
Q Consensus 171 ~~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~ 244 (275)
..+.++|+|.|+.. .-++++|++.|++||.|.++.++.++.+ +.++|+|||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45678999999963 2368999999999999999999988654 68899999999999999999999999999999
Q ss_pred eEEEEEccc
Q 044184 245 PLRLKFGQK 253 (275)
Q Consensus 245 ~l~v~~a~~ 253 (275)
.|.|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999975
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=4.2e-16 Score=108.41 Aligned_cols=71 Identities=30% Similarity=0.556 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPC----G-------TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
..++|||+|||.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|+|..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 46899999999999999999999999 8 8999998654 799999999999999999 89999999
Q ss_pred cceeeeee
Q 044184 146 GRIIRVEF 153 (275)
Q Consensus 146 g~~i~v~~ 153 (275)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999874
No 343
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=8.6e-16 Score=107.39 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=63.1
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE--LMGRPLR 247 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--i~g~~l~ 247 (275)
...+..+|||+|||+.+++++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+ ++|.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3556789999999999999999999999999999998864 79999999999999983 56655 5599999
Q ss_pred EEEcccCCc
Q 044184 248 LKFGQKNDD 256 (275)
Q Consensus 248 v~~a~~~~~ 256 (275)
|.++.++.+
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999998764
No 344
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.4e-15 Score=121.82 Aligned_cols=87 Identities=30% Similarity=0.455 Sum_probs=78.2
Q ss_pred CCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 249 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~ 249 (275)
.....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++. +|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred EcccCCcc
Q 044184 250 FGQKNDDV 257 (275)
Q Consensus 250 ~a~~~~~~ 257 (275)
++......
T Consensus 88 ~~~~~~~~ 95 (196)
T 1l3k_A 88 RAVSREDS 95 (196)
T ss_dssp ECCC----
T ss_pred cccCcccc
Confidence 99876543
No 345
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.3e-15 Score=112.70 Aligned_cols=77 Identities=27% Similarity=0.459 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
...++|||+|+ ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45789999996 79999999999999999999985 578999999999999999999999999999999999998
Q ss_pred ccCC
Q 044184 156 KFKK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
....
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.3e-15 Score=121.96 Aligned_cols=125 Identities=12% Similarity=0.135 Sum_probs=91.0
Q ss_pred CHHHHHHHHHhc--CccccccceeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEE
Q 044184 128 SPEEAQAAVNQF--DTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSK 205 (275)
Q Consensus 128 ~~~~A~~a~~~l--~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~ 205 (275)
+.+.+..|+... ....+.+....|........ +............++|||+|||..+++++|+++|++||.|..+.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~--p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 140 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPL--PEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ 140 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCC--CCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCC--cccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEE
Confidence 667888888866 44445555555543321000 00000000122458999999999999999999999999999999
Q ss_pred EeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 206 VVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 206 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
++.+. +|.++|||||+|.+.++|.+|+..+ |..+.|+.|.|.|++.--+
T Consensus 141 i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 141 MRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYFA 189 (193)
T ss_dssp EEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC--
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHHH
Confidence 88874 5889999999999999999999865 4599999999999876443
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=112.21 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE---GRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
....++|||+|||..+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++|++.|++ +.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 34578999999999999999999999998888 888877766 79999999999999999999999843 6677777
Q ss_pred EEEccc
Q 044184 248 LKFGQK 253 (275)
Q Consensus 248 v~~a~~ 253 (275)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 765543
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.5e-15 Score=111.47 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=66.2
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee-----E
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP-----L 246 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~-----l 246 (275)
...++|||+|||..+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+||+.|||..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999988754 89999999999999999999999999998 7
Q ss_pred EEEEcccCC
Q 044184 247 RLKFGQKND 255 (275)
Q Consensus 247 ~v~~a~~~~ 255 (275)
.|..+.++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777766644
No 349
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=2.1e-15 Score=121.92 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCcEEEEecCC-CCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 173 TQHKLYVSNLS-WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 173 ~~~~l~v~nl~-~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
+.++|||+||| ..+++++|+++|++||.|.+++++.+ .+|||||+|.+.++|.+|++.|||..+.|+.|.|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999854 4799999999999999999999999999999999999
Q ss_pred ccCC
Q 044184 252 QKND 255 (275)
Q Consensus 252 ~~~~ 255 (275)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8654
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.8e-15 Score=124.03 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=71.3
Q ss_pred CCCCCcEEEEecCCCCC---------CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 044184 170 ARETQHKLYVSNLSWKV---------RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 240 (275)
.....++|||+||+..+ ++++|+++|++||.|.++.++. ++|||||+|.+.++|+.|++.|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35568899999999998 7999999999999999999884 48999999999999999999999999
Q ss_pred c------------CCeeEEEEEcccCCcccccc
Q 044184 241 L------------MGRPLRLKFGQKNDDVSESN 261 (275)
Q Consensus 241 i------------~g~~l~v~~a~~~~~~~~~~ 261 (275)
| .|+.|.|.||+....+..++
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~~~~ 236 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDPAAQK 236 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---------
T ss_pred EeccccccccccCCCCEEEEEEccCCCCHHHhh
Confidence 9 89999999999876654433
No 351
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=1.7e-15 Score=127.19 Aligned_cols=114 Identities=20% Similarity=0.253 Sum_probs=96.4
Q ss_pred cccCCcchhhhhccccccccccCCcchhcccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEE
Q 044184 45 YNFPTRNLCLQVCSTLQDTTVETKPEQTQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFV 124 (275)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV 124 (275)
-.|.+...+..+...++.....+.+.......+.++|||+|||..+++++|+++|+.||.|.+|.++.+.+|.++|||||
T Consensus 63 V~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 142 (261)
T 3sde_A 63 IRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFV 142 (261)
T ss_dssp EECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEE
T ss_pred EEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEE
Confidence 44666777777776666666666666666667789999999999999999999999999999999999999999999999
Q ss_pred EEcCHHHHHHHHHhcCccc-cc---cceeeeeehhccC
Q 044184 125 TMASPEEAQAAVNQFDTQE-VS---GRIIRVEFAKKFK 158 (275)
Q Consensus 125 ~f~~~~~A~~a~~~l~~~~-~~---g~~i~v~~a~~~~ 158 (275)
+|.+.++|.+|+..|++.. +. +++|.|.++....
T Consensus 143 ~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 143 EFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999999996644 33 9999999987543
No 352
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=2.4e-15 Score=118.29 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=84.5
Q ss_pred cccCCcchhhhhccccccccccCCcch--------hcccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCC
Q 044184 45 YNFPTRNLCLQVCSTLQDTTVETKPEQ--------TQKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGG 116 (275)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 116 (275)
-.|.+.+.+..+. .++.....+.+.. .......++|||+|||..+++++|+++|+.||.|..+ ..+|
T Consensus 59 V~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~ 133 (175)
T 1fje_B 59 VDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDG 133 (175)
T ss_dssp EEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSS
T ss_pred EEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCC
Confidence 3456666666665 3444433322221 1223356899999999999999999999999988765 5588
Q ss_pred CCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhc
Q 044184 117 KNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK 156 (275)
Q Consensus 117 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~ 156 (275)
.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|+.+
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 9999999999999999999999999999999999999875
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.8e-15 Score=103.50 Aligned_cols=72 Identities=21% Similarity=0.509 Sum_probs=64.7
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhc----C-------CceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSAN----F-------NPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 240 (275)
.+.++|||+|||..+++++|+++|++| | .+..+.+..+ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999998 6 6777777643 899999999999999999 899999
Q ss_pred cCCeeEEEEE
Q 044184 241 LMGRPLRLKF 250 (275)
Q Consensus 241 i~g~~l~v~~ 250 (275)
+.|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=3e-15 Score=122.82 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=71.1
Q ss_pred cCCCCeEEEcCCCCCC---------CHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccc-
Q 044184 75 QNIRRKLYVFNLPWSF---------SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV- 144 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~- 144 (275)
....++|||+||+..+ ++++|+++|+.||.|.+|+|+. ++|||||+|.+.++|+.|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4467999999999998 7999999999999999999985 579999999999999999999999999
Q ss_pred -----------ccceeeeeehhccCC
Q 044184 145 -----------SGRIIRVEFAKKFKK 159 (275)
Q Consensus 145 -----------~g~~i~v~~a~~~~~ 159 (275)
.|+.|.|+|+.....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-14 Score=104.36 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=72.4
Q ss_pred CCCCCcEEEEecCCCCCC-----------HhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 044184 170 ARETQHKLYVSNLSWKVR-----------STHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDG 238 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 238 (275)
...+.++|+|.||..... +++|+++|++||.|..+.+ .+. .++|||||+|.+.++|.+|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445688999999944332 5799999999999999855 443 3799999999999999999999999
Q ss_pred CccCCeeEEEEEcccCCccc
Q 044184 239 KELMGRPLRLKFGQKNDDVS 258 (275)
Q Consensus 239 ~~i~g~~l~v~~a~~~~~~~ 258 (275)
..+.|+.|.|.|+.++.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CEETTEECEEEECCSCCCSS
T ss_pred CEECCcEEEEEEeCCCCCcc
Confidence 99999999999998876653
No 356
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=8.3e-15 Score=120.52 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=75.9
Q ss_pred CCCCCcEEEEecCCC-CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 044184 170 ARETQHKLYVSNLSW-KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 248 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v 248 (275)
...+.++|||+|||. .+++++|+++|++||.|..+.++.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 456688999999999 99999999999999999999998763 789999999999999999999999999999999
Q ss_pred EEcccCCcc
Q 044184 249 KFGQKNDDV 257 (275)
Q Consensus 249 ~~a~~~~~~ 257 (275)
.|++.+...
T Consensus 105 ~~a~~~~~~ 113 (229)
T 2adc_A 105 TLSKHQNVQ 113 (229)
T ss_dssp ECCSCCCCC
T ss_pred EEecCcccc
Confidence 999876543
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=104.54 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=66.7
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFG 251 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a 251 (275)
...++|||+|||..+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. +..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 34689999999999999999999999999999988754 789999999999999754321 33458999999999
Q ss_pred ccCCcc
Q 044184 252 QKNDDV 257 (275)
Q Consensus 252 ~~~~~~ 257 (275)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887654
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-14 Score=104.25 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=69.7
Q ss_pred cCCCCeEEEcCCCCCCC-----------HHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccc
Q 044184 75 QNIRRKLYVFNLPWSFS-----------VAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQE 143 (275)
Q Consensus 75 ~~~~~~l~v~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 143 (275)
..++++|+|+||..... +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|+..|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34579999999954332 6899999999999999966 444 379999999999999999999999999
Q ss_pred cccceeeeeehhccC
Q 044184 144 VSGRIIRVEFAKKFK 158 (275)
Q Consensus 144 ~~g~~i~v~~a~~~~ 158 (275)
+.|+.|.|.++.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987644
No 359
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.6e-14 Score=122.39 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.7
Q ss_pred CCCCCcEEEEecCCCCCCHhHHH----HHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 044184 170 ARETQHKLYVSNLSWKVRSTHLR----EFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~ 245 (275)
...+.++|||+|||..+++++|+ ++|++||.|..+.++. ++.++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 35668899999999999999976 9999999999988875 6889999999999999999999999999999999
Q ss_pred EEEEEcccCCc
Q 044184 246 LRLKFGQKNDD 256 (275)
Q Consensus 246 l~v~~a~~~~~ 256 (275)
|.|.|++.+.+
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999987664
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2.9e-14 Score=102.64 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCcEEEEecC--CCCCC--------HhHHHHHHhhcCCceeEEEeeeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCC
Q 044184 172 ETQHKLYVSNL--SWKVR--------STHLREFFSANFNPVSSKVVFESNE--GRSAGYGFVSFATKEEAEAAISSLDGK 239 (275)
Q Consensus 172 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~ 239 (275)
.++++|.|.|+ |..+. +++|++.|++||.|.++.|+.+..+ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33443 3689999999999999999887654 367999999999999999999999999
Q ss_pred ccCCeeEEEEEccc
Q 044184 240 ELMGRPLRLKFGQK 253 (275)
Q Consensus 240 ~i~g~~l~v~~a~~ 253 (275)
.+.||.|.|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999764
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=1.3e-14 Score=104.38 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=70.6
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHhhccCCceeEEEEEeCCC---CCCcceEEEEEcCHHHHHHHHHhcCcc
Q 044184 76 NIRRKLYVFNL--PWSFS--------VAEIKNLFAPCGTVVDVEIIKHKG---GKNRNFAFVTMASPEEAQAAVNQFDTQ 142 (275)
Q Consensus 76 ~~~~~l~v~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~ 142 (275)
.++++|.|.|+ |..+. +++|++.|++||.|.+|.|+++.. ++++|+|||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 33333 478999999999999999998873 368999999999999999999999999
Q ss_pred ccccceeeeeehhc
Q 044184 143 EVSGRIIRVEFAKK 156 (275)
Q Consensus 143 ~~~g~~i~v~~a~~ 156 (275)
.+.||.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998764
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=2.5e-15 Score=108.10 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=63.8
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceee
Q 044184 83 VFNLPWSFSVAEIKNLF------------APCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150 (275)
Q Consensus 83 v~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 150 (275)
+.|||..+++++|++.| ++||.|.+|.|+++.+++++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566667777776666 999999999999988889999999999999999999999999999999999
Q ss_pred eeeh
Q 044184 151 VEFA 154 (275)
Q Consensus 151 v~~a 154 (275)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=115.65 Aligned_cols=79 Identities=27% Similarity=0.420 Sum_probs=73.0
Q ss_pred CcEEEEecCCC-CCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 044184 174 QHKLYVSNLSW-KVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 252 (275)
Q Consensus 174 ~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~ 252 (275)
.++|||+|||. .+++++|+++|++||.|..+.++.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999988763 7899999999999999999999999999999999998
Q ss_pred cCCcc
Q 044184 253 KNDDV 257 (275)
Q Consensus 253 ~~~~~ 257 (275)
.+...
T Consensus 78 ~~~~~ 82 (198)
T 1qm9_A 78 HQNVQ 82 (198)
T ss_dssp CCSCC
T ss_pred CCCcC
Confidence 76543
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.5e-14 Score=103.91 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=63.1
Q ss_pred EecCCCCCCHhHHHHHH------------hhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 179 VSNLSWKVRSTHLREFF------------SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 179 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
+.||+..+++++|+++| ++||.|.++.++.+. ++.++|||||+|.+.++|.+|++.|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777777666 999999999998764 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 044184 247 RLKFG 251 (275)
Q Consensus 247 ~v~~a 251 (275)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=7.7e-14 Score=102.36 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHhhccCCceeEEEEEeCC-----CCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 76 NIRRKLYVFNLPW--SF---SVAEIKNLFAPCGTVVDVEIIKHK-----GGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 76 ~~~~~l~v~nLp~--~~---te~~L~~~F~~~G~i~~v~i~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
.++++|+|+|+-. ++ -+++|++.|++||.|.+|.|+++. +++++|++||+|.+.++|.+|+..|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3679999999942 22 378999999999999999999876 2467899999999999999999999999999
Q ss_pred cceeeeeehhc
Q 044184 146 GRIIRVEFAKK 156 (275)
Q Consensus 146 g~~i~v~~a~~ 156 (275)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998764
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=1.1e-13 Score=101.44 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCcEEEEecCCC--CC---CHhHHHHHHhhcCCceeEEEeeeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 044184 173 TQHKLYVSNLSW--KV---RSTHLREFFSANFNPVSSKVVFESN----EGRSAGYGFVSFATKEEAEAAISSLDGKELMG 243 (275)
Q Consensus 173 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~g~v~~~~i~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g 243 (275)
+.++|+|.|+-. .+ .+++|++.|++||.|.++.|+.+.. ++.++|+|||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 22 3589999999999999999998864 45678999999999999999999999999999
Q ss_pred eeEEEEEccc
Q 044184 244 RPLRLKFGQK 253 (275)
Q Consensus 244 ~~l~v~~a~~ 253 (275)
|.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=93.14 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehhccCC
Q 044184 88 WSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK 159 (275)
Q Consensus 88 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~~~~~ 159 (275)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|..|+..+++ +.|++|.|.|+.....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999998 46899999999999999999997554 6799999999886543
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.5e-12 Score=91.33 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=58.6
Q ss_pred CCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEcccCCc
Q 044184 184 WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 256 (275)
Q Consensus 184 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~~~~ 256 (275)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|.+|++.++| +.|+.|.|.|++.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999887 46899999999999999999997554 6799999999988754
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=7.4e-13 Score=114.23 Aligned_cols=110 Identities=18% Similarity=0.267 Sum_probs=80.3
Q ss_pred cCCCCeEEEcC--CCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc---cc--
Q 044184 75 QNIRRKLYVFN--LPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS---GR-- 147 (275)
Q Consensus 75 ~~~~~~l~v~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~-- 147 (275)
..++++|||+| |+..+++++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45578999999 578999999999999999999987753 5799999999999999999999999873 45
Q ss_pred eeeeeehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCHhHHHHHHhh
Q 044184 148 IIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197 (275)
Q Consensus 148 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 197 (275)
.|.+.++..-.... ......+.. |.-+|..+++++=..++..
T Consensus 90 ~ly~~~~~~~~~~~-----~~~~~lp~G---l~~~p~fis~~Ee~~Ll~~ 131 (345)
T 3tht_A 90 TLYLNFVEKVQWKE-----LRPQALPPG---LMVVEEIISSEEEKMLLES 131 (345)
T ss_dssp ECEEEECSSEEEEE-----EECCSCCTT---EEEETTCSCHHHHHHHHTT
T ss_pred EEEEEEeecccccc-----cccccCCCc---eEEEcCcCCHHHHHHHHHh
Confidence 57778774221100 000111222 2335677887776677665
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=2e-12 Score=94.15 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 76 NIRRKLYVFNLPWSF----------SVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
.++++|.|.|+=... -+++|++.|++||.|.+|.|.++. .+|+|||+|.+.++|.+|+..|||..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346789999883221 245889999999999999986653 5899999999999999999999999999
Q ss_pred cceeeeeehh
Q 044184 146 GRIIRVEFAK 155 (275)
Q Consensus 146 g~~i~v~~a~ 155 (275)
||.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999975
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=4.5e-12 Score=92.24 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCCcEEEEecCCCCC----------CHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 044184 172 ETQHKLYVSNLSWKV----------RSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL 241 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i 241 (275)
.+.++|.|.|+=..- .+++|++.|++||.|.++.+..+ ..+|+|||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457789999983321 23589999999999999888654 2589999999999999999999999999
Q ss_pred CCeeEEEEEccc
Q 044184 242 MGRPLRLKFGQK 253 (275)
Q Consensus 242 ~g~~l~v~~a~~ 253 (275)
+||.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3.5e-12 Score=109.99 Aligned_cols=78 Identities=26% Similarity=0.309 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEec--CCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---C
Q 044184 169 PARETQHKLYVSN--LSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM---G 243 (275)
Q Consensus 169 ~~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~---g 243 (275)
....+..+|||+| |++.+++++|+++|++||.|..+.+.. +||||||+|.+.++|++|++.|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3467788999999 578999999999999999998765542 4799999999999999999999999873 4
Q ss_pred e--eEEEEEcc
Q 044184 244 R--PLRLKFGQ 252 (275)
Q Consensus 244 ~--~l~v~~a~ 252 (275)
+ .|.+.|+.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 68888874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=7.4e-11 Score=80.77 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCCcEEEEecCCC----CCCH----hHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 044184 171 RETQHKLYVSNLSW----KVRS----THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELM 242 (275)
Q Consensus 171 ~~~~~~l~v~nl~~----~~~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~ 242 (275)
.++..+|+|...+. .+-+ .+|.+.|.+||.|+.++++.+. +||+|.+.++|.+|++ |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 45677888988772 3433 6799999999999999998762 8999999999999999 9999999
Q ss_pred CeeEEEEEcccC
Q 044184 243 GRPLRLKFGQKN 254 (275)
Q Consensus 243 g~~l~v~~a~~~ 254 (275)
||.|+|+++++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999999875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2e-10 Score=83.74 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=71.4
Q ss_pred CCCCCCCcEEEEecCCCC-CCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCccCC
Q 044184 168 APARETQHKLYVSNLSWK-VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFAT-KEEAEAAISSLD--GKELMG 243 (275)
Q Consensus 168 ~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--g~~i~g 243 (275)
.........|+|+||+.. ++.++|+++|++||.|..+.++.++. .|||+|.+ ..+|..|+..|| |..|.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 345677899999999999 99999999999999999999987643 49999999 899999999995 778999
Q ss_pred eeEEEEEcccCCc
Q 044184 244 RPLRLKFGQKNDD 256 (275)
Q Consensus 244 ~~l~v~~a~~~~~ 256 (275)
..+.+......++
T Consensus 86 ~~~~~evL~GeeE 98 (121)
T 1owx_A 86 KEVTWEVLEGEVE 98 (121)
T ss_dssp SSEEEEECCHHHH
T ss_pred cEEEEEECCCHHH
Confidence 9999887765543
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=6.2e-10 Score=81.12 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcC-HHHHHHHHHhcC--ccccccceeeee
Q 044184 77 IRRKLYVFNLPWS-FSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMAS-PEEAQAAVNQFD--TQEVSGRIIRVE 152 (275)
Q Consensus 77 ~~~~l~v~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--~~~~~g~~i~v~ 152 (275)
....|||+||+.. ++.++|+++|+.||.|..|.+.++.. .|||.|.+ .++|..|+..++ +..|.|..+.++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 4689999999999 99999999999999999999987763 59999999 899999999984 566888777776
Q ss_pred eh
Q 044184 153 FA 154 (275)
Q Consensus 153 ~a 154 (275)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=3.4e-10 Score=77.48 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=61.4
Q ss_pred CCCeEEEcCCC----CCCCH----HHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccce
Q 044184 77 IRRKLYVFNLP----WSFSV----AEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRI 148 (275)
Q Consensus 77 ~~~~l~v~nLp----~~~te----~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 148 (275)
+..||+|.-.+ .++-. .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|+. |+|..+.|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 35678887766 23434 6789999999999999998765 8999999999999998 9999999999
Q ss_pred eeeeehhc
Q 044184 149 IRVEFAKK 156 (275)
Q Consensus 149 i~v~~a~~ 156 (275)
|+|+++.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99998874
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=6.7e-10 Score=76.39 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCCCCcEEEEecCCCC-----CCH----hHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 044184 170 ARETQHKLYVSNLSWK-----VRS----THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKE 240 (275)
Q Consensus 170 ~~~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 240 (275)
..++..||+|..++.. +-+ .+|.+.|.+||.++.++++.+. +||+|.+.++|.+||+ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3566789999988742 333 5689999999999999999762 9999999999999999 99999
Q ss_pred cCCeeEEEEEccc
Q 044184 241 LMGRPLRLKFGQK 253 (275)
Q Consensus 241 i~g~~l~v~~a~~ 253 (275)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998653
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.9e-09 Score=87.82 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCHhHHHHHHhhcCCceeEEEeeeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 044184 186 VRSTHLREFFSANFNPVSSKVVFESN----EGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 253 (275)
Q Consensus 186 ~~~~~l~~~f~~~g~v~~~~i~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~v~~a~~ 253 (275)
-.+++|++.|++||.|..+.+..+.. ++.++|++||+|.+.++|.+|++.|||..+.||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35678999999999999999986544 448999999999999999999999999999999999999753
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=1.7e-09 Score=88.12 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=66.3
Q ss_pred CCeEEEcCCC-----CCCCHHHHHHhhccCCceeEEEEEeCC-----CCCCcceEEEEEcCHHHHHHHHHhcCccccccc
Q 044184 78 RRKLYVFNLP-----WSFSVAEIKNLFAPCGTVVDVEIIKHK-----GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR 147 (275)
Q Consensus 78 ~~~l~v~nLp-----~~~te~~L~~~F~~~G~i~~v~i~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 147 (275)
...+.+.|+- ..-.+++|++.|++||.|.++.|.++. +++++|++||+|.+.++|.+|+..|+|+.+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555552 234678999999999999999998655 348999999999999999999999999999999
Q ss_pred eeeeeehhc
Q 044184 148 IIRVEFAKK 156 (275)
Q Consensus 148 ~i~v~~a~~ 156 (275)
.|.+.++..
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998753
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=1.5e-09 Score=74.61 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCCC-----CCH----HHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccc
Q 044184 77 IRRKLYVFNLPWS-----FSV----AEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGR 147 (275)
Q Consensus 77 ~~~~l~v~nLp~~-----~te----~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 147 (275)
+..||+|.-++.. +-. .+|.+.|..||.|..+++..|+ +||+|.+.++|.+|+. |+|..+.||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 3578999877632 323 5688999999999999998765 9999999999999998 999999999
Q ss_pred eeeeeeh
Q 044184 148 IIRVEFA 154 (275)
Q Consensus 148 ~i~v~~a 154 (275)
.|+|++-
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=5.9e-08 Score=68.02 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhc-----CCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSAN-----FNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRP 245 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~ 245 (275)
.+..++|-|-|||..+++..|+.+.+++ |.++++.+..| .+-|+|+|.+...|-+|.-+|+|.+|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3446789999999999999999999999 88899888876 455999999999999999999999999999
Q ss_pred EEEEE
Q 044184 246 LRLKF 250 (275)
Q Consensus 246 l~v~~ 250 (275)
|+|.=
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99863
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.2e-07 Score=63.28 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccC-----CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceee
Q 044184 76 NIRRKLYVFNLPWSFSVAEIKNLFAPC-----GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIR 150 (275)
Q Consensus 76 ~~~~~l~v~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 150 (275)
+..++|-+-|||-.+++..|+.+..++ |.+..|.+..|. +-|+|+|.+...|.+|.=.|+|..+.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 346899999999999999999999999 999999998876 4699999999999999888999999999999
Q ss_pred eeeh
Q 044184 151 VEFA 154 (275)
Q Consensus 151 v~~a 154 (275)
+--.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=4.8e-05 Score=52.90 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcc---C--CceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAP---C--GTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~---~--G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
..+|.|.|||..+.++.|.-+|+. - |.|.+++... +-|+|+|.+.+.|++.++. ..+.+.+..|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 578999999999999999999987 2 5799888753 4799999999999999983 4777888889987
Q ss_pred ehhccCCCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 044184 153 FAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVR 187 (275)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 187 (275)
... .....+|++.+|+..++
T Consensus 80 P~~---------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAP---------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp ECC---------------CCCCCCCCCCSCCCCCC
T ss_pred cCC---------------CCCcceEeeecCCCCCC
Confidence 543 22345677888877654
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.86 E-value=6.8e-05 Score=51.44 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=55.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-C--CCCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-G--GKNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~--~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
.+|.|++||+.+|++++.+.++.++.+.-......+ + ....+-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 578999999999999999999999877666666555 2 123468999999999999999999998853
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.83 E-value=7.1e-05 Score=51.39 Aligned_cols=55 Identities=29% Similarity=0.511 Sum_probs=47.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcC
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 140 (275)
.+.++| +.|+++...||.++|+.||.|. |+++.|- .|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 467778 9999999999999999999554 7787765 79999999999999998653
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=0.0001 Score=51.48 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCCC-CH----hHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 044184 173 TQHKLYVSNLSWKV-RS----THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLR 247 (275)
Q Consensus 173 ~~~~l~v~nl~~~~-~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l~ 247 (275)
-.++|+|.||+..+ .. +.++++|..|+.......++- =+-..|.|.++++|.+|-..|||..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998866 32 467899999888888777632 22468999999999999999999999999999
Q ss_pred EEEcccC
Q 044184 248 LKFGQKN 254 (275)
Q Consensus 248 v~~a~~~ 254 (275)
|-|+++-
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999854
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00034 Score=48.83 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeee
Q 044184 78 RRKLYVFNLPWSF-S----VAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVE 152 (275)
Q Consensus 78 ~~~l~v~nLp~~~-t----e~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 152 (275)
.++|+|.||+..+ . .+.++++|..|+++.....++.- .-.-|.|.+.++|.+|-..||+..+.|+.++|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4789999998754 2 35789999999998888777533 367999999999999999999999999999999
Q ss_pred ehhc
Q 044184 153 FAKK 156 (275)
Q Consensus 153 ~a~~ 156 (275)
++.+
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9874
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.47 E-value=0.00017 Score=49.66 Aligned_cols=54 Identities=28% Similarity=0.529 Sum_probs=46.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcC
Q 044184 79 RKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFD 140 (275)
Q Consensus 79 ~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 140 (275)
+.++| +.|+++...||.++|+.||. ..|.++.|- .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 56677 99999999999999999994 458888765 79999999999999998764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.30 E-value=0.0012 Score=45.23 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=53.6
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEG--RSAGYGFVSFATKEEAEAAISSLDGKELMG 243 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~~i~g 243 (275)
.+|.|++||..++++++.+.++....+.....+..+... ..-.-|+|.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 478999999999999999999997655444444332221 223569999999999999999999988664
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.19 E-value=0.0006 Score=47.01 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCC-C-C-CCcceEEEEEcCHHHHHHHHHhcCccccc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-G-G-KNRNFAFVTMASPEEAQAAVNQFDTQEVS 145 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~-~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 145 (275)
+-+|.|+.||+.+|++++.+.++.+-.+........+ + + ....-|||.|.+.+++....+.++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4679999999999999999988876543322222222 1 1 12357999999999999999999998853
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.0018 Score=46.41 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=57.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcccccc-ceeeeeeh
Q 044184 77 IRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSG-RIIRVEFA 154 (275)
Q Consensus 77 ~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~i~v~~a 154 (275)
..+-|.|-+.|+.. ...|...|+.||.|.+... . ....+-.|.|.+..+|++|+.. ||..+.| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~--~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---S--NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---C--SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---C--CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 46789999999875 6778889999999998776 2 1235999999999999999984 9999875 55777664
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.16 E-value=0.0031 Score=43.27 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=45.1
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (275)
....++| ++|..+...||.++|++||+ +.|..+-| .-|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3455666 99999999999999999774 45666643 259999999999999999763
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.0064 Score=42.20 Aligned_cols=73 Identities=23% Similarity=0.273 Sum_probs=56.2
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhh----cCCce-eEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSA----NFNPV-SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~----~g~v~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g~~l 246 (275)
....+|.|.|||..+.++.|.-+|+. -||.+ .+... + +-|+|.|.+.+.|+++++. ..+.+.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--~------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--G------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--T------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--C------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34678999999999999999999998 23433 33333 1 4689999999999999983 3567888888
Q ss_pred EEEEccc
Q 044184 247 RLKFGQK 253 (275)
Q Consensus 247 ~v~~a~~ 253 (275)
.|.-.-+
T Consensus 77 sV~P~~~ 83 (104)
T 2dhx_A 77 SLRPAPP 83 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 8865443
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.15 E-value=0.0018 Score=46.41 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=60.8
Q ss_pred CCCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-eeEEEE
Q 044184 171 RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG-RPLRLK 249 (275)
Q Consensus 171 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~i~g-~~l~v~ 249 (275)
....+-|.|.+.|... ...|...|++||.|++.... ....+..|+|.+..+|++||. .||..|.| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3446789999999875 66688889999999887751 124589999999999999999 69999984 777777
Q ss_pred EcccCC
Q 044184 250 FGQKND 255 (275)
Q Consensus 250 ~a~~~~ 255 (275)
....+.
T Consensus 93 p~~d~~ 98 (119)
T 1wwh_A 93 PCIDKN 98 (119)
T ss_dssp ECCCHH
T ss_pred ECCCHH
Confidence 765443
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.87 E-value=0.00083 Score=48.87 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=58.0
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeC--------------CCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFES--------------NEGRSAGYGFVSFATKEEAEAAISSLDG 238 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~--------------~~~~~~g~afV~f~~~~~A~~a~~~l~g 238 (275)
...-|.|.+.|.... ..+.+.|++||.|.+-.-..+. ..-...++..|+|.+..+|.+|+. -||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 355788999976554 4577888999998762211110 000135688999999999999999 799
Q ss_pred CccCCeeEEEEEcccCC
Q 044184 239 KELMGRPLRLKFGQKND 255 (275)
Q Consensus 239 ~~i~g~~l~v~~a~~~~ 255 (275)
..|.|..|=|....+..
T Consensus 84 ~ii~G~mIGV~Py~~~~ 100 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTKDA 100 (132)
T ss_dssp CEETTEECEEEECCHHH
T ss_pred eEeCcEEEEEEECCHHH
Confidence 99999999999886544
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.45 E-value=0.0045 Score=42.61 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=44.2
Q ss_pred cEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 044184 175 HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237 (275)
Q Consensus 175 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (275)
..++| ++|..+...||.++|++|| -+.|..+-| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999976 455666643 259999999999999999775
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.25 E-value=0.0031 Score=43.45 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCC-C-CcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNE-G-RSAGYGFVSFATKEEAEAAISSLDGKELMG 243 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~-~-~~~g~afV~f~~~~~A~~a~~~l~g~~i~g 243 (275)
.+-+|.|+.||..+|++++.+.++.+........+..+.+ + ..-.-|+|.|.+.++.....+.++|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3567999999999999999999887544322222211111 1 112458999999999999999999987653
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.20 E-value=0.0087 Score=43.50 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeE-EEEEeCC-------------CC-CCcceEEEEEcCHHHHHHHHHhcCcc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVD-VEIIKHK-------------GG-KNRNFAFVTMASPEEAQAAVNQFDTQ 142 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~-------------~~-~~~g~afV~f~~~~~A~~a~~~l~~~ 142 (275)
...|.|-+.|+.. ...+.+.|++||.|.+ +.+.+.. .. ....|..|+|.+..+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 4668888997655 4567788999999765 2211100 00 1246999999999999999984 999
Q ss_pred ccccceeeeeehh
Q 044184 143 EVSGRIIRVEFAK 155 (275)
Q Consensus 143 ~~~g~~i~v~~a~ 155 (275)
.+.|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877777654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.68 E-value=0.0054 Score=54.65 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=44.7
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHH
Q 044184 73 QKQNIRRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137 (275)
Q Consensus 73 ~~~~~~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~ 137 (275)
.+.+..|.|||. .|...++.+|.++|+.||+|.++.+..+. .-||.|+|.+.+++..++.
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 344557999997 79999999999999999999998776543 2599999999999887775
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.36 E-value=0.037 Score=49.29 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=41.2
Q ss_pred CCCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 172 ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 172 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
+..+.|+|. .|..+++.+|.++|++||.|..+..-.+ . ..||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~---g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--F---GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--S---SEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--C---CeEEEEEeCCHHHHHHHHh
Confidence 345789997 7999999999999999998888666533 2 3699999999999997765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.52 E-value=0.42 Score=43.22 Aligned_cols=56 Identities=29% Similarity=0.491 Sum_probs=46.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT 141 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 141 (275)
...++|+ +|..|...+|.++|+.||.+ .|.++.+ ..|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 3577776 99999999999999999954 5666544 3799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.02 E-value=2.6 Score=38.08 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=44.0
Q ss_pred CcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 044184 174 QHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD 237 (275)
Q Consensus 174 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 237 (275)
...++|+ +|..|...+|.++|+.|| -+.+..+- ...|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg-~v~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFG-NIQISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGC-CCEEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcC-CEEEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 4556665 999999999999999977 45665552 2359999999999999999885
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.09 E-value=22 Score=26.93 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.7
Q ss_pred eEEEcCCCC-C--------CCHHHHHHhh--ccCCceeEEEEEeCCCCCCcceEEEEEcCH-HHHHHHH
Q 044184 80 KLYVFNLPW-S--------FSVAEIKNLF--APCGTVVDVEIIKHKGGKNRNFAFVTMASP-EEAQAAV 136 (275)
Q Consensus 80 ~l~v~nLp~-~--------~te~~L~~~F--~~~G~i~~v~i~~~~~~~~~g~afV~f~~~-~~A~~a~ 136 (275)
++.|-|+|. . ....+|++.| ..|.++. |+.+.++.| +.|++.|.|... .--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHH
Confidence 455667775 1 4567899977 9998866 666666655 778999999763 3333444
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.07 E-value=34 Score=22.61 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=40.2
Q ss_pred EEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 044184 177 LYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAISS 235 (275)
Q Consensus 177 l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 235 (275)
-|+...+...+..+|++.++..++| ..+..+..+. | ..-|+|.+....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHh
Confidence 4556678899999999999998887 4555555432 2 33599999887777765543
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=47.54 E-value=50 Score=20.69 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=38.2
Q ss_pred CCCHHHHHHhhccCC-----ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCccccccceeeeeehh
Q 044184 89 SFSVAEIKNLFAPCG-----TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK 155 (275)
Q Consensus 89 ~~te~~L~~~F~~~G-----~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~a~ 155 (275)
.+...+|..++..-+ .|-.|.+.. .|.||+-... .|..++..|++..+.|+.+.|+.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 466677777776544 355666632 3889988765 5678888899999999999887653
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.89 E-value=48 Score=21.84 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHh
Q 044184 81 LYVFNLPWSFSVAEIKNLFAP-CG-TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQ 138 (275)
Q Consensus 81 l~v~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~ 138 (275)
-|+-.+...++..+|++.++. || .|..|..+.-+.|. --|||......+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHHh
Confidence 445557789999999999987 66 37888877655443 2599999887777665543
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=37.36 E-value=82 Score=23.74 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=36.3
Q ss_pred EEEEecCCC-C--------CCHhHHHHHH--hhcCCceeEEEeeeCCCCCcccEEEEEeCCH-HHHHHHH
Q 044184 176 KLYVSNLSW-K--------VRSTHLREFF--SANFNPVSSKVVFESNEGRSAGYGFVSFATK-EEAEAAI 233 (275)
Q Consensus 176 ~l~v~nl~~-~--------~~~~~l~~~f--~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~-~~A~~a~ 233 (275)
.+.|-|+|. . .+..+|++.| .. +...++..+..+. .+.|++.|.|..- .--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~-F~p~kv~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRG-FNPTRVRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTT-CCCSEEEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcC-CCCceeEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 566777776 2 3447899977 88 6666677776643 3689999999753 3333343
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=36.01 E-value=94 Score=20.57 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=49.1
Q ss_pred CCcEEEEecCCCCCCHhHHHHHHhhcCCceeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC---C----CccCCee
Q 044184 173 TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLD---G----KELMGRP 245 (275)
Q Consensus 173 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~---g----~~i~g~~ 245 (275)
..+-+.|-|+|...-..++.-...-.|-.-.+..+ .|.|.|+|.+.++...|+..|- + .+|+|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 35678899999988877766555543444444444 3469999999999999998761 1 1366776
Q ss_pred EEEEEccc
Q 044184 246 LRLKFGQK 253 (275)
Q Consensus 246 l~v~~a~~ 253 (275)
..|--.-+
T Consensus 83 cdvistip 90 (129)
T 4eyt_A 83 CDVISTIP 90 (129)
T ss_dssp EEEECCCC
T ss_pred eeeeecCC
Confidence 66654433
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.25 E-value=1.1e+02 Score=20.14 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc
Q 044184 78 RRKLYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT 141 (275)
Q Consensus 78 ~~~l~v~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 141 (275)
.+-+-|-|||..+-..++.-.....|--..|..+. |.|.|.|.+.++-+-|+..|-+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHh
Confidence 46677889999999988888888888766676542 6799999999999999987644
No 410
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=30.53 E-value=73 Score=23.38 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=39.2
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
.-|+.-++...+..+|++.++..++| ..+..+..+. | ..-|+|.+....+|.....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHHH
Confidence 34555678889999999999998887 4555555432 3 3359999987766665544
No 411
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.22 E-value=75 Score=23.10 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=39.4
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
+-|+.-++...+..+|++.++..++| ..+..+..+. | .--|+|.+....+|.....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHH
Confidence 35566678899999999999998877 4555555432 2 3359999987766665544
No 412
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=29.91 E-value=1.2e+02 Score=21.75 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=31.6
Q ss_pred CCCHhHHHHHHhhcCCce-eEEEee----eCCCCCcccEEEEEeCCHHHHHHH
Q 044184 185 KVRSTHLREFFSANFNPV-SSKVVF----ESNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v~-~~~i~~----~~~~~~~~g~afV~f~~~~~A~~a 232 (275)
..+..+|++-+...+++. ++.++. .-..|.+.|||.| |++.+.|.+.
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 578899999887766663 333332 2235677788877 7888887764
No 413
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.35 E-value=52 Score=21.80 Aligned_cols=33 Identities=6% Similarity=0.191 Sum_probs=25.0
Q ss_pred eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCc
Q 044184 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDT 141 (275)
Q Consensus 105 i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 141 (275)
|.++.+.. ..+||.||++...++...+++...|
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55665543 3789999999999998888876544
No 414
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.59 E-value=52 Score=24.16 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCCHhHHHHHHhhcCCc-eeEEEeeeC----CCCCcccEEEEEeCCHHHHHHH
Q 044184 185 KVRSTHLREFFSANFNP-VSSKVVFES----NEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v-~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~a 232 (275)
..+..+|++-+...+++ .+..++..- ..|.+.|||.| |++.+.|.+.
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 56788888888775555 344443322 34677788877 7888887764
No 415
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=26.39 E-value=1.3e+02 Score=20.68 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=28.4
Q ss_pred CCCCHHHHHHhhcc-CCc---eeEEEEEeCC--CCCCcceEEEEEcCHHHHHHH
Q 044184 88 WSFSVAEIKNLFAP-CGT---VVDVEIIKHK--GGKNRNFAFVTMASPEEAQAA 135 (275)
Q Consensus 88 ~~~te~~L~~~F~~-~G~---i~~v~i~~~~--~~~~~g~afV~f~~~~~A~~a 135 (275)
...+..+|++.+.. |+. +.-|.=++.. .|++.|||.| |.+.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677788876655 442 2223333333 4667788877 7888777653
No 416
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=26.27 E-value=71 Score=23.51 Aligned_cols=56 Identities=9% Similarity=0.163 Sum_probs=39.2
Q ss_pred EEEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 044184 176 KLYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAAIS 234 (275)
Q Consensus 176 ~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 234 (275)
+-|+..++...+..+|++.++..++| ..+..+..+. | .--|+|.+....+|.....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-G--KKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHHG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEcCCCCcHHHHHH
Confidence 34556678889999999999998877 4555555432 2 3359999987776665543
No 417
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=26.23 E-value=1.1e+02 Score=20.77 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=29.4
Q ss_pred CCCCHHHHHHhhcc-CCc---eeEEEEEeCC--CCCCcceEEEEEcCHHHHHHHHH
Q 044184 88 WSFSVAEIKNLFAP-CGT---VVDVEIIKHK--GGKNRNFAFVTMASPEEAQAAVN 137 (275)
Q Consensus 88 ~~~te~~L~~~F~~-~G~---i~~v~i~~~~--~~~~~g~afV~f~~~~~A~~a~~ 137 (275)
...+..+|++.+.. |+. +.-|.=++.. .|++.|||.| |.+.+.|++.-.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 45677888877665 442 2223323333 4667788876 777877766543
No 418
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.18 E-value=15 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHhhccCCceeEEEEEeCCCCCCcceEEEEEc
Q 044184 93 AEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMA 127 (275)
Q Consensus 93 ~~L~~~F~~~G~i~~v~i~~~~~~~~~g~afV~f~ 127 (275)
+++.++|...|.|+-.. ..+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn-------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN-------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE-------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE-------CCCCeeEEeeC
Confidence 45567777777765433 35789999976
No 419
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=25.67 E-value=31 Score=23.39 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=27.3
Q ss_pred CCCHhHHHHHHhhcCCc-eeEEEeeeC----CCCCcccEEEEEeCCHHHHHH
Q 044184 185 KVRSTHLREFFSANFNP-VSSKVVFES----NEGRSAGYGFVSFATKEEAEA 231 (275)
Q Consensus 185 ~~~~~~l~~~f~~~g~v-~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~ 231 (275)
..+..+|++-+...+++ .+..++..- ..|.+.|||.| |.+.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888777765555 334444322 24667777766 566555544
No 420
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=25.55 E-value=1.2e+02 Score=19.86 Aligned_cols=53 Identities=6% Similarity=0.097 Sum_probs=37.2
Q ss_pred EEEecCCCCCCHhHHHHHHhhcCCc--eeEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 044184 177 LYVSNLSWKVRSTHLREFFSANFNP--VSSKVVFESNEGRSAGYGFVSFATKEEAEAA 232 (275)
Q Consensus 177 l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~a 232 (275)
-|+...+...+..+|++.++..++| ..+..+..+. | ..-|+|.+....+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCcHHHH
Confidence 4566678899999999999998877 4555555432 2 34589999876665443
No 421
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.22 E-value=1.3e+02 Score=20.50 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=27.8
Q ss_pred CCCCHHHHHHhhcc-CCc---eeEEEEEeCC--CCCCcceEEEEEcCHHHHHH
Q 044184 88 WSFSVAEIKNLFAP-CGT---VVDVEIIKHK--GGKNRNFAFVTMASPEEAQA 134 (275)
Q Consensus 88 ~~~te~~L~~~F~~-~G~---i~~v~i~~~~--~~~~~g~afV~f~~~~~A~~ 134 (275)
...+..+|++.+.. |+. +.-|.=++.. .|++.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888877665 342 2223323333 5667788876 777777655
No 422
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=23.23 E-value=1.1e+02 Score=22.44 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHH
Q 044184 81 LYVFNLPWSFSVAEIKNLFAP-CG-TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137 (275)
Q Consensus 81 l~v~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~ 137 (275)
-|+--+...++..+|++.++. || .|..|..+.-+.|.- -|||.+....+|.....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHH
Confidence 444456789999999988877 56 378888776665433 48999977666665444
No 423
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=22.95 E-value=1.2e+02 Score=22.12 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=39.0
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-ceeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHH
Q 044184 81 LYVFNLPWSFSVAEIKNLFAP-CG-TVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137 (275)
Q Consensus 81 l~v~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~ 137 (275)
-|+--+...++..+|++.++. || .|..|..+.-+.|.- -|||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHH
Confidence 445556789999999988877 56 378888776664432 48999987766665443
No 424
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.14 E-value=68 Score=21.98 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=25.9
Q ss_pred eeEEEEEeCCCCCCcceEEEEEcCHHHHHHHHHhcCcc
Q 044184 105 VVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142 (275)
Q Consensus 105 i~~v~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 142 (275)
|.++.... .-+||-|||=.+..++..|++.+.+.
T Consensus 41 I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPE----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECT----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 66665432 25899999999999999999865543
No 425
>4fj3_P RAF proto-oncogene serine/threonine-protein kinas; 14-3-3 fold, all alpha-helical, adapter protein, protein BIN transferase complex; HET: SEP; 1.95A {Homo sapiens}
Probab=20.81 E-value=63 Score=17.09 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=10.8
Q ss_pred ccCCCCCccccCCCCcccce
Q 044184 13 LTNHPFSFSCLFPKLPHCIK 32 (275)
Q Consensus 13 ~~~~~~~~~~~~p~~~~~~~ 32 (275)
.|.|.|++.-++|+.-.++.
T Consensus 5 StPhaf~~~tp~p~~~~sLs 24 (36)
T 4fj3_P 5 STPHAFTFNTSSPSSEGSLS 24 (36)
T ss_pred cCCccccccCCCCCCccccc
Confidence 34555666666665544443
No 426
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.30 E-value=1.4e+02 Score=22.06 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=29.0
Q ss_pred CCHHHHHHhhccCCce---eEEEEEeCC-CCCCcceEEEE
Q 044184 90 FSVAEIKNLFAPCGTV---VDVEIIKHK-GGKNRNFAFVT 125 (275)
Q Consensus 90 ~te~~L~~~F~~~G~i---~~v~i~~~~-~~~~~g~afV~ 125 (275)
.++++|+++-...|.+ .++.+..+. +|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5899999999999975 456677775 89888888764
Done!