BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044187
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q500U8|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana
GN=TKPR1 PE=2 SV=1
Length = 326
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 55/194 (28%)
Query: 40 NVLEACAQTNTVDKVVFTSSLTAVK------------------------FKLWHGLSKTL 75
NVL +C + ++ +VV TSS + V+ F++W+ LSKTL
Sbjct: 109 NVLRSCRKNPSLKRVVLTSSSSTVRIRDDFDPKIPLDESIWTSVELCKRFQVWYALSKTL 168
Query: 76 AEKTAWALAMDRGLSMVSINGGLVMGPDV------TISN--PYLKGAAEMYE-DGVMASV 126
AE+ AW + + G+ +V++ ++GP + T S+ LKG E ++ G M V
Sbjct: 169 AEQAAWKFSEENGIDLVTVLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYV 228
Query: 127 DLRFYVDAHICVFED-------VSSYDAMKLARML--LPPSDTSTP-PLRFEDTRVHPQR 176
+ HI VFE + S + + L ++ L S P P RFE
Sbjct: 229 HIDDVARTHIVVFEHEAAQGRYICSSNVISLEELVSFLSARYPSLPIPKRFE-------- 280
Query: 177 VSNKKLNKLMVNFD 190
KLN+L +FD
Sbjct: 281 ----KLNRLHYDFD 290
>sp|Q9CA28|TKPR2_ARATH Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana
GN=TKPR2 PE=2 SV=1
Length = 321
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 20 PSDHSTYDELTAEVETMAAHNVLEACAQTN-TVDKVVFTSSLTAVK-------------- 64
P DH+ + L + NV+ +CA++ T+ ++V TSS ++++
Sbjct: 87 PQDHNIQETLVDPI-IKGTTNVMSSCAKSKATLKRIVLTSSCSSIRYRFDATEASPLNES 145
Query: 65 ----------FKLWHGLSKTLAEKTAWALAMDRGLSMVSINGGLVMGP--------DVTI 106
F LW+G +KTL E+ AW +A ++GL +V +N V+GP + +
Sbjct: 146 HWSDPEYCKRFNLWYGYAKTLGEREAWRIAEEKGLDLVVVNPSFVVGPLLGPKPTSTLLM 205
Query: 107 SNPYLKGAAEMYEDGVMASVDLRFYVDAHICVFED 141
KG A Y + + V + V AH+ E+
Sbjct: 206 ILAIAKGLAGEYPNFTVGFVHIDDVVAAHVLAMEE 240
>sp|P51102|DFRA_ARATH Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=3
SV=2
Length = 382
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 81/196 (41%), Gaps = 46/196 (23%)
Query: 40 NVLEACAQTNTVDKVVFTSSLTAV------------------------KFKLW-HGLSKT 74
+++AC + TV + VFTSS V K W + +SKT
Sbjct: 109 GIMKACVKAKTVRRFVFTSSAGTVNVEEHQKNVYDENDWSDLEFIMSKKMTGWMYFVSKT 168
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTIS---------NPYLKGAAEMYEDGVMAS 125
LAEK AW A ++GL +SI LV+GP +T S +P + A
Sbjct: 169 LAEKAAWDFAEEKGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQY 228
Query: 126 VDLRFYVDAHICVFED--------VSSYDA--MKLARMLLPPSDTSTPPLRFE--DTRVH 173
V L +AHI ++E SS+DA + +++ L P P FE D +
Sbjct: 229 VHLDDLCNAHIFLYEQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVDENLK 288
Query: 174 PQRVSNKKLNKLMVNF 189
S+KKL + NF
Sbjct: 289 SIEFSSKKLTDMGFNF 304
>sp|Q9XES5|DFRA_MALDO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
OS=Malus domestica GN=DFR PE=1 SV=1
Length = 348
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 46/196 (23%)
Query: 40 NVLEACAQTNTVDKVVFTSS------------------------LTAVKFKLW-HGLSKT 74
++L+AC + TV K+VFTSS +VK W + +SKT
Sbjct: 109 DILKACQKAKTVRKLVFTSSAGTVNVEEHQKPVYDESNWSDVEFCRSVKMTGWMYFVSKT 168
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP--YLKGAAEMYED----GVMAS--- 125
LAE+ AW A + + ++I LV+GP + S P + G + + + G++
Sbjct: 169 LAEQAAWKYAKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQY 228
Query: 126 VDLRFYVDAHICVFED--------VSSYDAM--KLARMLLPPSDTSTPPLRFE--DTRVH 173
V L +HI ++E SS+DA +L +ML P +F+ D +
Sbjct: 229 VHLDDLCLSHIYLYEHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLE 288
Query: 174 PQRVSNKKLNKLMVNF 189
P S+KKL ++ F
Sbjct: 289 PVHFSSKKLREIGFEF 304
>sp|Q84KP0|DFRA_PYRCO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
OS=Pyrus communis GN=DFR PE=1 SV=1
Length = 347
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 52/199 (26%)
Query: 40 NVLEACAQTNTVDKVVFTSS------------------------LTAVKFKLW-HGLSKT 74
++L+AC + TV K+VFTSS +VK W + +SKT
Sbjct: 109 DILKACQKAKTVRKLVFTSSAGTVNVEEHQKPVYDESNWSDVEFCRSVKMTGWMYFVSKT 168
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPD---------VTISNPYLKGAAE--MYEDGVM 123
LAE+ AW A + + ++I LV+GP +T +P L+ + + + G
Sbjct: 169 LAEQAAWKYAKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQY 228
Query: 124 ASVD----LRFYVDAH-------ICVFEDVSSYDAMKLARMLLPPSDTSTPPLRFE--DT 170
+D Y+ H IC D + ++ +K+ R P + P +F+ D
Sbjct: 229 VHLDDLCLSHIYLYKHPKAEGRYICSSHDATIHELVKMLREKYPEYNI---PTKFKGIDD 285
Query: 171 RVHPQRVSNKKLNKLMVNF 189
+ P S+KKL ++ F
Sbjct: 286 NLEPVHFSSKKLREIGFEF 304
>sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
Length = 344
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 46/213 (21%)
Query: 28 ELTAEVETMAAHNVLEACAQTNTVDKVVFTSSLTAVKF---------------------- 65
E E A V+ A A+ V +VV TSS+ AV
Sbjct: 97 EQMVEPAVNGAKFVINAAAEAK-VKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCK 155
Query: 66 --KLWHGLSKTLAEKTAWALAMDRGLSMVSINGGLVMGPDV--TISN------PYLKGAA 115
K W+ K +AE+ AW A ++G+ +V +N LV+GP + TI+ YL G+A
Sbjct: 156 NTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSA 215
Query: 116 EMYEDGVMASVDLRFYVDAHICVFEDVSSYDAMKLAR-------------MLLPPSDTST 162
+ Y + A VD+R AH+ V+E S+ LA L P T
Sbjct: 216 KTYANLTQAYVDVRDVALAHVLVYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPT 275
Query: 163 PPLRFEDTRVHPQRVSNKKLNKLMVNFDGEFQA 195
++ R P + +N+K+ L + F Q+
Sbjct: 276 KCKDEKNPRAKPYKFTNQKIKDLGLEFTSTKQS 308
>sp|P51110|DFRA_VITVI Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1
Length = 337
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 46/196 (23%)
Query: 40 NVLEACAQTNTVDKVVFTSSLTAV------------------------KFKLW-HGLSKT 74
++++CA TV ++VFTSS V K W + +SKT
Sbjct: 109 GIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKT 168
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP--------YLKGAAEMYEDGVMAS- 125
LAE+ AW A + + ++I LV+GP + S P + G Y
Sbjct: 169 LAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQF 228
Query: 126 VDLRFYVDAHICVFED--------VSSYDA--MKLARMLLPPSDTSTPPLRFE--DTRVH 173
V L +AHI +FE+ SS+D + LA+ML P F+ D +
Sbjct: 229 VHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLK 288
Query: 174 PQRVSNKKLNKLMVNF 189
S+KKL L F
Sbjct: 289 SVCFSSKKLTDLGFEF 304
>sp|P51105|DFRA_GERHY Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1
Length = 366
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 25/95 (26%)
Query: 40 NVLEACAQTNTVDKVVFTSSLTAV------------------------KFKLW-HGLSKT 74
+++ +C + TV K+VFTSS V K W + +SKT
Sbjct: 110 SIIRSCVKAKTVKKLVFTSSAGTVNGQEKQLHVYDESHWSDLDFIYSKKMTAWMYFVSKT 169
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP 109
LAEK AW +S +SI LV+GP +T + P
Sbjct: 170 LAEKAAWDATKGNNISFISIIPTLVVGPFITSTFP 204
>sp|Q9SAH9|CCR2_ARATH Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1
Length = 332
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 52/216 (24%)
Query: 25 TYDELTAEVETM------AAHNVLEACAQTNTVDKVVFTSSLTAVKF------------- 65
T +T + ETM A V++A A+ V +VVFTSS+ AV
Sbjct: 83 TASPMTDDPETMLEPAVNGAKFVIDAAAKAK-VKRVVFTSSIGAVYMNPNRDTQAIVDEN 141
Query: 66 -----------KLWHGLSKTLAEKTAWALAMDRGLSMVSINGGLVMGPDVTISN------ 108
K W+ K LAE++AW A +G+ +V +N LV+GP + +
Sbjct: 142 CWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAKGVDLVVLNPVLVLGPPLQSAINASLVH 201
Query: 109 --PYLKGAAEMYEDGVMASVDLRFYVDAHICVFEDVSSYDAMKLARMLLPPSDTSTPPLR 166
YL G+A+ Y + VD+R H+ V+E S+ LA L + +
Sbjct: 202 ILKYLTGSAKTYANLTQVYVDVRDVALGHVLVYEAPSASGRYILAETALHRGEVVEILAK 261
Query: 167 F-------------EDTRVHPQRVSNKKLNKLMVNF 189
F ++ R P + + +K+ L + F
Sbjct: 262 FFPEYPLPTKCSDEKNPRAKPYKFTTQKIKDLGLEF 297
>sp|P51106|DFRA_HORVU Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1
Length = 354
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 56/194 (28%)
Query: 40 NVLEACAQTNTVDKVVFTSSLTAV------------------------KFKLW-HGLSKT 74
+++ AC + TV ++VFTSS +V K W + +SK
Sbjct: 109 SIMRACKEAGTVKRIVFTSSAGSVNIEERPRPAYDQDNWSDIDYCRRVKMTGWMYFVSKA 168
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP--------YLKGAAEMYEDGVMASV 126
LAEK A A + GL +SI LV+GP ++ P + G Y ++ V
Sbjct: 169 LAEKAAMEYASENGLDFISIIPTLVVGPFLSAGMPPSLVTALALITGNEAHYS--ILKQV 226
Query: 127 DLRF---YVDAHICVFED--------VSSYDAM--KLARML---LPPSDTSTPPLRFE-- 168
L DA +FE SS+DA LARML P D P +F
Sbjct: 227 QLVHLDDLCDAMTFLFEHPEANGRYICSSHDATIHGLARMLQDRFPEYDI---PQKFAGV 283
Query: 169 DTRVHPQRVSNKKL 182
D + P S+KKL
Sbjct: 284 DDNLQPIHFSSKKL 297
>sp|Q9SEV0|BAN_ARATH Anthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2
Length = 340
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 27/89 (30%)
Query: 40 NVLEACAQTNTVDKVVFTSSLTAVK---------------------------FKLWHGLS 72
NVL++C ++ +V +V++TSS AV F + +S
Sbjct: 113 NVLKSCLKSKSVKRVIYTSSAAAVSINNLSGTGIVMNEENWTDVEFLTEEKPFNWGYPIS 172
Query: 73 KTLAEKTAWALAMDRGLSMVSINGGLVMG 101
K LAEKTAW A + +++V++ L+ G
Sbjct: 173 KVLAEKTAWEFAKENKINLVTVIPALIAG 201
>sp|P14720|DFRA_PETHY Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2
Length = 380
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 35/126 (27%)
Query: 40 NVLEACAQTNTVDKVVFTSS------------------------LTAVKFKLW-HGLSKT 74
+++E+CA+ NTV ++VFTSS + A K W + SK
Sbjct: 119 SIIESCAKANTVKRLVFTSSAGTLDVQEQQKLFYDQTSWSDLDFIYAKKMTGWMYFASKI 178
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNPYLKGAAEMYEDGVMASVDLRFYVDA 134
LAEK A A + + +SI LV+GP +T + P ++ ++ L +A
Sbjct: 179 LAEKAAMEEAKKKNIDFISIIPPLVVGPFITPTFP----------PSLITALSLITGNEA 228
Query: 135 HICVFE 140
H C+ +
Sbjct: 229 HYCIIK 234
>sp|P51107|DFRA_SOLLC Dihydroflavonol-4-reductase OS=Solanum lycopersicum PE=2 SV=1
Length = 379
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 25/95 (26%)
Query: 40 NVLEACAQTNTVDKVVFTSS------------------------LTAVKFKLW-HGLSKT 74
+++E+CA+ NTV ++VFTSS + A K W + +SK
Sbjct: 121 SIIESCAKANTVKRLVFTSSAGTLDVQEDQKLFYDETSWSDLDFIYAKKMTGWMYFVSKI 180
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP 109
LAEK A A + +SI LV+GP +T + P
Sbjct: 181 LAEKAAMEEARKNNIDFISIIPPLVVGPFITSTFP 215
>sp|P51108|DFRA_MAIZE Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3 SV=1
Length = 357
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 83/198 (41%), Gaps = 50/198 (25%)
Query: 40 NVLEACAQTNTVDKVVFTSSLTAV------------------------KFKLW-HGLSKT 74
+++ AC + TV ++VFTSS V K W + +SKT
Sbjct: 114 SIMRACKEAGTVRRIVFTSSAGTVNLEERQRPVYDEESWTDVDFCRRVKMTGWMYFVSKT 173
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP--------YLKGAAEMYEDGVMASV 126
LAEK A A A + GL +V+I LV+GP ++ S P + G A Y ++ V
Sbjct: 174 LAEKAALAYAAEHGLDLVTIIPTLVVGPFISASMPPSLITALALITGNAPHYS--ILKQV 231
Query: 127 DLRF---YVDAHICVFED--------VSSYDAM--KLARMLLPPSDTSTPPLRFEDTR-- 171
L DA I +FE+ SS+D LA ML P RF +
Sbjct: 232 QLIHLDDLCDAEIFLFENPAAAGRYVCSSHDVTIHGLAAMLRDRYPEYDVPQRFPGIQDD 291
Query: 172 VHPQRVSNKKLNKLMVNF 189
+ P R S+KKL L F
Sbjct: 292 LQPVRFSSKKLQDLGFTF 309
>sp|P51109|DFRA_MEDSA Dihydroflavonol-4-reductase (Fragment) OS=Medicago sativa GN=DFR1
PE=2 SV=1
Length = 217
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 25/95 (26%)
Query: 40 NVLEACAQTNTVDKVVFTSS-----LTAVKFKLW--------------------HGLSKT 74
++++AC + TV ++++TSS +T + LW + +SKT
Sbjct: 92 DIMKACLKAKTVRRLIYTSSAGTLNVTEDQKPLWDESCWSDVEFCRRVKMTGWMYFVSKT 151
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP 109
LAE+ AW A + + +++I LV+GP + + P
Sbjct: 152 LAEQEAWKFAKEHKMDVITIIPPLVVGPFLIPTMP 186
>sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1
Length = 360
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 26/95 (27%)
Query: 40 NVLEACAQTNTVDKVVFTSS------------------------LTAVKFKLW-HGLSKT 74
++L++C + + +VVFTSS + +VK W + +SK
Sbjct: 126 DILKSCVKAK-LRRVVFTSSGGTVNVEATQKPVYDETCWSALDFIRSVKMTGWMYFVSKI 184
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGPDVTISNP 109
LAE+ AW A + L +SI LV+GP + S P
Sbjct: 185 LAEQAAWKYAAENNLEFISIIPPLVVGPFIMPSMP 219
>sp|P14721|DFRA_ANTMA Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1
Length = 446
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 40 NVLEACAQTNTVDKVVFTSS------------------------LTAVKFKLW-HGLSKT 74
N++++C Q TV K +FT+S + + K W + +SK
Sbjct: 121 NIIKSCVQAKTVKKFIFTTSGGTVNVEEHQKPVYDETDSSDMDFINSKKMTGWMYFVSKI 180
Query: 75 LAEKTAWALAMDRGLSMVSINGGLVMGP 102
LAEK A + + +SI LV+GP
Sbjct: 181 LAEKAGMEAAKENNIDFISIIPPLVVGP 208
>sp|Q4ZYY9|RSGA_PSEU2 Putative ribosome biogenesis GTPase RsgA OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=rsgA PE=3 SV=1
Length = 343
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 105 TISNPYLKGAAEMYEDGVMASVDLRFYVDAHICVFEDVSSYDAMKLARMLLPPSDTSTPP 164
T+ P L+ +A + DG+ + L+ +D HI VF S L LLP +DT P
Sbjct: 185 TLGYPVLEVSAH-HGDGMQS---LQSQLDGHISVFVGQSGVGKSSLVNSLLPETDTRVGP 240
Query: 165 L 165
L
Sbjct: 241 L 241
>sp|Q56623|GALE_VIBCL UDP-glucose 4-epimerase OS=Vibrio cholerae GN=galE PE=3 SV=1
Length = 328
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 69 HGLSKTLAEKTAWALAMDRGLSMVSINGGLVMGPDV 104
+GLSK+ AEK ALA D + +V I +V GP V
Sbjct: 149 YGLSKSEAEKQLVALAKDSSMEVVIIRPTIVYGPGV 184
>sp|Q48P11|RSGA_PSE14 Putative ribosome biogenesis GTPase RsgA OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=rsgA PE=3
SV=1
Length = 343
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 105 TISNPYLKGAAEMYEDGVMASVDLRFYVDAHICVFEDVSSYDAMKLARMLLPPSDTSTPP 164
T+ P L+ +A + DG+ L+ +D HI VF S L LLP +DT P
Sbjct: 185 TLGYPVLEVSAH-HGDGMQT---LQSQLDGHISVFVGQSGVGKSSLVNSLLPETDTRVGP 240
Query: 165 L 165
L
Sbjct: 241 L 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,219,132
Number of Sequences: 539616
Number of extensions: 2430244
Number of successful extensions: 6929
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6895
Number of HSP's gapped (non-prelim): 25
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)