BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044191
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
 pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
          Length = 545

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 18  NASIVYAALAIDKEL----QPDKVKR-QISVIDGKLLVHFEAVEARFPRALFSAFVDVLT 72
           N +   + + IDKE      PD VK  +I++ID  L +    +EA+   +  S   D L 
Sbjct: 208 NDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLN 267

Query: 73  LETKTIEQ 80
            ET T +Q
Sbjct: 268 QETNTFKQ 275


>pdb|4H15|A Chain A, Crystal Structure Of A Short Chain Alcohol
           Dehydrogenase-Related Dehydrogenase (Target Id
           Nysgrc-011812) From Sinorhizobium Meliloti 1021 In Space
           Group P21
 pdb|4H15|B Chain B, Crystal Structure Of A Short Chain Alcohol
           Dehydrogenase-Related Dehydrogenase (Target Id
           Nysgrc-011812) From Sinorhizobium Meliloti 1021 In Space
           Group P21
 pdb|4H15|C Chain C, Crystal Structure Of A Short Chain Alcohol
           Dehydrogenase-Related Dehydrogenase (Target Id
           Nysgrc-011812) From Sinorhizobium Meliloti 1021 In Space
           Group P21
 pdb|4H15|D Chain D, Crystal Structure Of A Short Chain Alcohol
           Dehydrogenase-Related Dehydrogenase (Target Id
           Nysgrc-011812) From Sinorhizobium Meliloti 1021 In Space
           Group P21
 pdb|4H16|A Chain A, Crystal Structure Of A Short Chain Alcohol
           Dehydrogenase-Related Dehydrogenase (Target Id
           Nysgrc-011812) From Sinorhizobium Meliloti 1021 In Space
           Group P6422
          Length = 261

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 16  NENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFP 60
           NE +  ++AA+ +D++L PD V R   V+     VH  +++   P
Sbjct: 106 NELSLNLFAAVRLDRQLVPDXVARGSGVV-----VHVTSIQRVLP 145


>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
 pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
 pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In
          Complex With Cacodylate
 pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In
          Complex With Cacodylate
 pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex
          With O- Phosphotyrosine
 pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
          Protein
          Length = 187

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 1  KWFFPCNDFEVDYESNENASIVYAALAID---KELQPDKVKRQISVI 44
          KW  P +  EVD +      + YA  A+D   K L P +VK + + I
Sbjct: 7  KWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSI 53


>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
          Acidophilum
 pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
          Acidophilum
          Length = 159

 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 23 YAALAIDKEL----QPDKVKR-QISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKT 77
           + + IDKE      PD VK  +I++ID  L +    +EA+   +  S   D L  ET T
Sbjct: 1  MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60

Query: 78 IEQF 81
           +Q 
Sbjct: 61 FKQM 64


>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
           Mycobacterium Tuberculosis
 pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
           Mycobacterium Tuberculosis
          Length = 447

 Score = 25.4 bits (54), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 12  DYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEAR 58
           ++   +  ++  A +  D+ + PD  K  +SV+ G   VH   V+ R
Sbjct: 299 EFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLR 345


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,374,773
Number of Sequences: 62578
Number of extensions: 71794
Number of successful extensions: 134
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 9
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)