BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044191
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q14657|LAGE3_HUMAN L antigen family member 3 OS=Homo sapiens GN=LAGE3 PE=1 SV=2
          Length = 143

 Score = 35.8 bits (81), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 9   FEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFV 68
             V + +   A I + +LA D E     V + ++V    L+V ++A + R  R     F+
Sbjct: 65  LSVPFPTPLEAEIAHGSLAPDAEPHQRVVGKDLTVSGRILVVRWKAEDCRLLRISVINFL 124

Query: 69  DVLTLETKTIEQFG 82
           D L+L  +T+++FG
Sbjct: 125 DQLSLVVRTMQRFG 138


>sp|Q01285|CHS4_NEUCR Chitin synthase 4 OS=Neurospora crassa (strain ATCC 24698 /
           74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=chs-4
           PE=3 SV=3
          Length = 1235

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 2   WFFPCNDFEVDYESNENASIVY 23
           W+FPCN F  D  S  N +I Y
Sbjct: 364 WYFPCNTFNQDGSSKPNTTIPY 385


>sp|C1F697|IF2_ACIC5 Translation initiation factor IF-2 OS=Acidobacterium capsulatum
           (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=infB PE=3
           SV=1
          Length = 1061

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 11  VDYESNENASIVYAALAIDK-ELQPDKVKRQI 41
           VD+    N  I+ A   IDK E QPD+VK+Q+
Sbjct: 653 VDHAKAANVPIIVAVNKIDKPEAQPDRVKKQL 684


>sp|Q9CR70|LAGE3_MOUSE L antigen family member 3 OS=Mus musculus GN=Lage3 PE=2 SV=1
          Length = 148

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 11  VDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDV 70
           V + ++  A I   +L  D E     V +++ V    L V + A ++R  R     F+D 
Sbjct: 72  VPFPTSLEAEIACGSLVPDVEPHRGLVGKELKVSGCMLEVRWIAEDSRLLRLSIINFLDQ 131

Query: 71  LTLETKTIEQFG 82
           L+L   TI+ FG
Sbjct: 132 LSLVVNTIQLFG 143


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,738,472
Number of Sequences: 539616
Number of extensions: 924867
Number of successful extensions: 2106
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2102
Number of HSP's gapped (non-prelim): 6
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)