Query 044191
Match_columns 87
No_of_seqs 104 out of 196
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3enc_A Protein PCC1; dimerizat 99.8 2.1E-19 7.1E-24 114.9 5.0 77 2-79 9-86 (87)
2 2lkz_A RNA-binding protein 5; 57.0 5 0.00017 24.1 1.6 36 10-53 57-92 (95)
3 4e1r_A Protein LSR2; anti-para 56.9 12 0.00041 23.3 3.3 53 18-70 23-79 (86)
4 1dtc_A Acetyl-delta-toxin; NMR 52.4 17 0.0006 17.6 2.8 20 64-83 6-25 (26)
5 2ln3_A De novo designed protei 51.5 10 0.00035 22.8 2.3 47 7-55 27-75 (83)
6 4e1p_A Protein LSR2; anti-para 51.1 11 0.00038 21.9 2.4 34 37-70 21-54 (61)
7 1wg1_A KIAA1579 protein, homol 48.9 9.4 0.00032 21.8 1.9 36 10-57 44-79 (88)
8 2ku7_A MLL1 PHD3-CYP33 RRM chi 46.4 14 0.00049 22.4 2.5 31 10-52 109-139 (140)
9 1uaw_A Mouse-musashi-1; RNP-ty 46.3 27 0.00093 18.8 3.5 23 10-34 46-68 (77)
10 1fjc_A Nucleolin RBD2, protein 44.4 28 0.00094 19.8 3.5 34 10-55 57-90 (96)
11 2cqb_A Peptidyl-prolyl CIS-tra 41.1 15 0.00052 21.2 2.0 34 9-54 57-90 (102)
12 3r27_A HnRNP L, heterogeneous 38.6 22 0.00074 21.9 2.5 33 11-53 62-94 (100)
13 2rrl_A FLIK, flagellar HOOK-le 38.4 92 0.0032 21.2 7.0 47 26-74 91-137 (169)
14 2lxi_A RNA-binding protein 10; 36.9 18 0.00061 20.9 1.8 34 10-54 48-81 (91)
15 2wbr_A GW182, gawky, LD47780P; 32.8 20 0.00068 22.0 1.6 33 11-55 48-80 (89)
16 2xnq_A Nuclear polyadenylated 30.4 12 0.00042 21.9 0.3 16 11-26 62-77 (97)
17 2cq1_A PTB-like protein L; RRM 30.4 24 0.00082 21.2 1.7 18 11-28 56-73 (101)
18 3md1_A Nuclear and cytoplasmic 28.8 27 0.00094 19.1 1.6 17 10-26 47-63 (83)
19 2ytc_A PRE-mRNA-splicing facto 28.7 42 0.0014 18.4 2.4 17 10-26 52-68 (85)
20 1fje_B Nucleolin RBD12, protei 28.5 45 0.0015 20.7 2.8 32 10-53 140-171 (175)
21 3mdf_A Peptidyl-prolyl CIS-tra 28.0 28 0.00096 19.1 1.6 18 10-27 53-70 (85)
22 3s7r_A Heterogeneous nuclear r 27.9 56 0.0019 18.0 2.9 16 10-25 57-72 (87)
23 2cqh_A IGF-II mRNA-binding pro 26.6 33 0.0011 19.3 1.7 18 10-27 48-65 (93)
24 2krb_A Eukaryotic translation 26.4 32 0.0011 19.0 1.6 18 10-27 51-68 (81)
25 2e5h_A Zinc finger CCHC-type a 26.1 36 0.0012 19.1 1.8 18 10-27 62-79 (94)
26 2kl8_A OR15; structural genomi 25.8 51 0.0018 19.7 2.5 25 38-63 32-56 (85)
27 3bs9_A Nucleolysin TIA-1 isofo 25.7 33 0.0011 18.9 1.6 33 10-54 52-84 (87)
28 1x5t_A Splicing factor 3B subu 25.4 40 0.0014 19.0 2.0 33 10-54 52-84 (96)
29 4a8x_A RNA-binding protein wit 25.0 34 0.0012 18.8 1.6 34 9-54 50-83 (88)
30 1x4e_A RNA binding motif, sing 24.9 35 0.0012 18.8 1.6 17 10-26 51-67 (85)
31 2cph_A RNA binding motif prote 24.8 77 0.0026 18.1 3.2 17 10-26 62-78 (107)
32 2div_A TRNA selenocysteine ass 24.5 45 0.0015 18.9 2.1 18 10-27 56-73 (99)
33 2cqp_A RNA-binding protein 12; 24.4 40 0.0014 19.1 1.8 18 10-27 61-78 (98)
34 1why_A Hypothetical protein ri 24.4 35 0.0012 19.5 1.6 18 10-27 57-74 (97)
35 2fc8_A NCL protein; structure 24.3 41 0.0014 19.2 1.9 33 10-54 58-90 (102)
36 2e5i_A Heterogeneous nuclear r 24.2 34 0.0012 21.6 1.6 18 10-27 66-83 (124)
37 2hvz_A Splicing factor, argini 24.0 42 0.0014 19.2 1.9 18 10-27 41-58 (101)
38 1x5s_A Cold-inducible RNA-bind 23.7 42 0.0015 19.1 1.9 18 10-27 58-75 (102)
39 2dgt_A RNA-binding protein 30; 23.4 39 0.0013 19.0 1.6 34 10-55 48-81 (92)
40 2dnp_A RNA-binding protein 14; 23.4 39 0.0013 19.0 1.6 17 11-27 48-64 (90)
41 2fc9_A NCL protein; structure 23.2 49 0.0017 18.9 2.1 34 10-55 57-90 (101)
42 2hiq_A Hypothetical protein YD 23.2 94 0.0032 19.9 3.5 68 7-83 12-85 (113)
43 1x4f_A Matrin 3; structural ge 23.1 89 0.003 19.3 3.4 19 11-29 67-85 (112)
44 3zzy_A Polypyrimidine tract-bi 23.0 38 0.0013 21.8 1.6 18 10-27 70-87 (130)
45 2dnq_A RNA-binding protein 4B; 22.6 40 0.0014 18.9 1.6 18 10-27 46-63 (90)
46 1p1t_A Cleavage stimulation fa 22.6 53 0.0018 18.7 2.1 34 10-55 54-87 (104)
47 2cqc_A Arginine/serine-rich sp 22.5 41 0.0014 18.9 1.6 17 10-26 61-77 (95)
48 2dgu_A Heterogeneous nuclear r 22.1 41 0.0014 19.4 1.6 32 11-54 50-81 (103)
49 3p5t_L Cleavage and polyadenyl 21.7 51 0.0017 18.6 1.9 18 10-27 49-66 (90)
50 2cpf_A RNA binding motif prote 21.7 48 0.0016 18.8 1.8 18 10-27 54-71 (98)
51 2cpj_A Non-POU domain-containi 21.5 48 0.0017 18.9 1.8 18 10-27 55-72 (99)
52 1x4a_A Splicing factor, argini 21.5 44 0.0015 19.4 1.6 18 10-27 65-82 (109)
53 1wf1_A RNA-binding protein RAL 21.5 48 0.0016 19.4 1.8 18 10-27 66-83 (110)
54 2do4_A Squamous cell carcinoma 21.5 43 0.0015 19.1 1.6 33 10-54 62-94 (100)
55 2fy1_A RNA-binding motif prote 21.4 55 0.0019 19.6 2.1 18 10-27 52-69 (116)
56 2dnz_A Probable RNA-binding pr 21.4 45 0.0015 18.7 1.6 18 10-27 51-68 (95)
57 2ek1_A RNA-binding protein 12; 21.3 44 0.0015 18.7 1.6 17 10-26 61-77 (95)
58 3lo3_A Uncharacterized conserv 21.3 79 0.0027 18.8 2.8 23 2-25 50-72 (94)
59 2cpe_A RNA-binding protein EWS 21.2 49 0.0017 19.3 1.8 18 10-27 69-86 (113)
60 1x5u_A Splicing factor 3B subu 21.1 50 0.0017 18.9 1.8 18 10-27 61-78 (105)
61 2e5j_A Methenyltetrahydrofolat 21.1 52 0.0018 18.7 1.9 18 10-27 60-77 (97)
62 1nu4_A U1A RNA binding domain; 21.0 45 0.0016 18.8 1.6 36 10-57 55-90 (97)
63 4fxv_A ELAV-like protein 1; RN 20.9 45 0.0015 19.5 1.6 32 10-53 65-96 (99)
64 1whw_A Hypothetical protein ri 20.8 51 0.0017 18.7 1.8 34 10-55 54-87 (99)
65 2dgv_A HnRNP M, heterogeneous 20.8 46 0.0016 18.5 1.6 18 10-27 52-69 (92)
66 3ulh_A THO complex subunit 4; 20.8 45 0.0016 19.2 1.6 32 10-53 74-105 (107)
67 3pgw_A U1-A; protein-RNA compl 20.6 1.3E+02 0.0043 20.3 4.0 32 10-53 248-280 (282)
68 2dis_A Unnamed protein product 20.6 1.2E+02 0.0041 17.3 3.5 18 10-27 56-73 (109)
69 2cqi_A Nucleolysin TIAR; RNA r 20.5 47 0.0016 19.1 1.6 33 10-54 59-91 (103)
70 2dit_A HIV TAT specific factor 20.4 61 0.0021 19.2 2.1 18 10-27 68-85 (112)
71 1nsx_A Galactose mutarotase; e 20.3 1.2E+02 0.0042 22.0 4.1 23 36-58 138-161 (347)
72 2cq4_A RNA binding motif prote 20.2 53 0.0018 19.2 1.8 31 10-53 71-101 (114)
73 2cpx_A Hypothetical protein FL 20.1 62 0.0021 18.9 2.1 18 10-27 71-88 (115)
74 2dhg_A TRNA selenocysteine ass 20.0 55 0.0019 18.7 1.8 18 10-27 55-72 (104)
No 1
>3enc_A Protein PCC1; dimerization domain, keops, telomere, unknown function; 2.63A {Pyrococcus furiosus} PDB: 3eno_C
Probab=99.77 E-value=2.1e-19 Score=114.94 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=72.2
Q ss_pred CccceeEEEEeCCChhHHHHHHhhcccCcccCc-cceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHHHHHHHHHHH
Q 044191 2 WFFPCNDFEVDYESNENASIVYAALAIDKELQP-DKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLETKTIE 79 (87)
Q Consensus 2 ~~~~~~~L~VpF~s~~~A~ia~~sL~vD~e~~p-~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~l~Lv~~tm~ 79 (87)
|++.+ .|+++|++++.|+++|+||.||++..| .+.+.++.++|+.|.|+++|.|.+.||+++|+|++|++++.++++
T Consensus 9 ~~i~a-~l~~e~~~~e~A~iVy~Sl~~E~~~~~~~RS~~~i~l~~~~l~i~i~A~D~~aLRA~lNs~lRlI~vA~~~~e 86 (87)
T 3enc_A 9 KRVQA-KIEMEFPSEDVAKVVYEAVLYEHLSVPYRRSEIDFKLEGKKIILDIKATDSSALRGTVNSYLRWIKAAIDVIE 86 (87)
T ss_dssp CCEEE-EEEEECSCHHHHHHHHHHHTHHHHTCCSCSSEECCEESSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cceEE-EEEEEeCCHHHHHHHHHHhCcccccCCCCCceEEEEEeCCEEEEEEEEChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899 999999999999999999999988888 678999999999999999999999999999999999999988754
No 2
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=56.98 E-value=5 Score=24.07 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=26.3
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEE
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFE 53 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~ 53 (87)
-|.|.++++|+-|.+.|.=- ...+.++|..|.|+|+
T Consensus 57 FV~f~~~~~A~~Ai~~lng~--------~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 57 FVQLSSAMDASQLLQILQSL--------HPPLKIDGKTIGVDFA 92 (95)
T ss_dssp EEECSSSHHHHHHHHHHHSS--------SSCEEETTEEEEEEEC
T ss_pred EEEECCHHHHHHHHHHhcCC--------CCCceECCEEEEEEEc
Confidence 38899999999999988421 1125667778888874
No 3
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=56.94 E-value=12 Score=23.29 Aligned_cols=53 Identities=8% Similarity=0.003 Sum_probs=35.7
Q ss_pred HHHHHHhhc---ccCccc-CccceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHH
Q 044191 18 NASIVYAAL---AIDKEL-QPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDV 70 (87)
Q Consensus 18 ~A~ia~~sL---~vD~e~-~p~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~ 70 (87)
++.+|+++. .=|-.- .+..-...|.++|-.-.|..++..+..||.++.-|++.
T Consensus 23 ~~~MAqkv~V~LvDDLDG~~~adETV~FsLDGv~YEIDLS~~NA~kLR~aLapyI~a 79 (86)
T 4e1r_A 23 QGAMAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAA 79 (86)
T ss_dssp ------CCCCCCBCTTTCCSBCCEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEEEEEEcCCCCCcCCcEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHh
Confidence 345566633 223222 23334789999999999999999999999999999863
No 4
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=52.39 E-value=17 Score=17.65 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q 044191 64 FSAFVDVLTLETKTIEQFGQ 83 (87)
Q Consensus 64 vnsfld~l~Lv~~tm~~f~~ 83 (87)
++..-|.++++++|.+.|-.
T Consensus 6 isTIgdfvKlI~~TV~KFtk 25 (26)
T 1dtc_A 6 ISTIGDLVKWIIDTVNKFTK 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55667889999999998854
No 5
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=51.49 E-value=10 Score=22.78 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=31.0
Q ss_pred eEEEEeCCChhHHHHHHhhcccCcc--cCccceEEEEEEECCEEEEEEEec
Q 044191 7 NDFEVDYESNENASIVYAALAIDKE--LQPDKVKRQISVIDGKLLVHFEAV 55 (87)
Q Consensus 7 ~~L~VpF~s~~~A~ia~~sL~vD~e--~~p~~v~r~l~v~g~~L~v~~~a~ 55 (87)
+.|+|.|.|-.+-+|-- ..-|-| -+...|+..-+-+||.|.|+..+.
T Consensus 27 ldlevefdstddkeiee--ferdmedlakktgvqiqkqwqgnklrirlkgs 75 (83)
T 2ln3_A 27 LDLEVEFDSTDDKEIEE--FERDMEDLAKKTGVQIQKQWQGNKLRIRLKGS 75 (83)
T ss_dssp CEEEEEECCCCHHHHHH--HHHHHHHHHHHHTCCEEEEEETTEEEEEEESS
T ss_pred CceEEEecCCChHHHHH--HHhHHHHHHHhhchhHHHHhcCCeEEEEeccc
Confidence 68999999987777632 122222 123346666677899999988763
No 6
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=51.14 E-value=11 Score=21.90 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=31.1
Q ss_pred eEEEEEEECCEEEEEEEeccCchHHHHHHHHHHH
Q 044191 37 VKRQISVIDGKLLVHFEAVEARFPRALFSAFVDV 70 (87)
Q Consensus 37 v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~ 70 (87)
-...|.++|-.-.|..++..+..||.++.-|++.
T Consensus 21 eTV~F~ldG~~YeIDLs~~nA~~lr~~L~~yi~~ 54 (61)
T 4e1p_A 21 ETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAA 54 (61)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999863
No 7
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=48.92 E-value=9.4 Score=21.77 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=25.1
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEeccC
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEA 57 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~d~ 57 (87)
-|.|.++++|+-|.+.|.- ..+.|..|.|.|...+.
T Consensus 44 fV~f~~~~~a~~Ai~~l~g------------~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 44 FVTLLNGEQAQNAIQMFHQ------------YSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp EECCSCHHHHHHHHHHHTT------------EEETTEEEEEEECCCCC
T ss_pred EEEECCHHHHHHHHHHhCC------------CeECCcEEEEEEcCCCc
Confidence 3789999999999986631 23456777777765543
No 8
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=46.36 E-value=14 Score=22.44 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=22.1
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEE
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHF 52 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~ 52 (87)
-|-|.++++|+-|.+.|. ...+.|..|.|+|
T Consensus 109 fV~f~~~~~a~~A~~~l~------------g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 109 FVEFELAEDAAAAIDNMN------------ESELFGRTIRVNL 139 (140)
T ss_dssp EEEESCHHHHHHHHHHST------------EEEETTEEEEEEC
T ss_pred EEEECCHHHHHHHHHHhC------------CCEECCEEEEEEe
Confidence 478999999999998762 1234566666665
No 9
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.27 E-value=27 Score=18.80 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=18.4
Q ss_pred EEeCCChhHHHHHHhhcccCcccCc
Q 044191 10 EVDYESNENASIVYAALAIDKELQP 34 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p 34 (87)
-|.|.++++|+-|.+.+. .++.-
T Consensus 46 fV~f~~~~~a~~a~~~~~--~~~~g 68 (77)
T 1uaw_A 46 FVTFMDQAGVDKVLAQSR--HELDS 68 (77)
T ss_dssp EECCCCTTHHHHHHHTTT--CCCSS
T ss_pred EEEEcCHHHHHHHHHhCC--CccCC
Confidence 488999999999999876 55443
No 10
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=44.39 E-value=28 Score=19.77 Aligned_cols=34 Identities=6% Similarity=0.105 Sum_probs=25.0
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEec
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAV 55 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~ 55 (87)
-|.|.++++|+-|.+.|. ...+.|..|.|.+...
T Consensus 57 fV~f~~~~~a~~A~~~l~------------g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 57 YIEFKSEADAEKNLEEKQ------------GAEIDGRSVSLYYTGE 90 (96)
T ss_dssp EEEESSHHHHHHHHHHTT------------EEEETTEEEEEEECSS
T ss_pred EEEECCHHHHHHHHHHhC------------CCEECCeEEEEEEcCC
Confidence 488999999999998763 1345677788877543
No 11
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.09 E-value=15 Score=21.19 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=24.4
Q ss_pred EEEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 9 FEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 9 L~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
--|-|.++++|+-|.+.|.- ..+.|..|.|.|..
T Consensus 57 afV~f~~~~~A~~A~~~l~g------------~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 57 AFVEFELAEDAAAAIDNMNE------------SELFGRTIRVNLAK 90 (102)
T ss_dssp EEECCSSHHHHHHHHHHHTT------------EEETTEEEEEEECC
T ss_pred EEEEECCHHHHHHHHHHhCC------------CEECCcEEEEEeCC
Confidence 35889999999999987621 22456777777754
No 12
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=38.61 E-value=22 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=23.0
Q ss_pred EeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEE
Q 044191 11 VDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFE 53 (87)
Q Consensus 11 VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~ 53 (87)
|.|++.++|+-|.+.+.-.+ +.+.|..|.|.|+
T Consensus 62 Vef~~~~~A~~Av~~ln~~~----------~~i~Gr~i~V~~S 94 (100)
T 3r27_A 62 VEFEDVLGACNAVNYAADNQ----------IYIAGHPAFVNYS 94 (100)
T ss_dssp EEESSHHHHHHHHHHHHHSC----------EEETTEEEEEEEC
T ss_pred EEECCHHHHHHHHHHhcCCC----------ceeCCcEEEEEec
Confidence 78999999999999886322 2334555666664
No 13
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=38.38 E-value=92 Score=21.18 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=33.9
Q ss_pred cccCcccCccceEEEEEEECCEEEEEEEeccCchHHHHHHHHHHHHHHH
Q 044191 26 LAIDKELQPDKVKRQISVIDGKLLVHFEAVEARFPRALFSAFVDVLTLE 74 (87)
Q Consensus 26 L~vD~e~~p~~v~r~l~v~g~~L~v~~~a~d~r~LRvsvnsfld~l~Lv 74 (87)
|..||+- -..+...++++|+.+.++|.+.+. ..|-.+.+-+..|+-.
T Consensus 91 IrL~Ppe-LG~l~V~l~~~~~q~~v~f~a~~~-~vReaLe~~lp~LRe~ 137 (169)
T 2rrl_A 91 LRLHPEE-LGQVHISLKLDDNQAQLQMVSPHS-HVRAALEAALPMLRTQ 137 (169)
T ss_dssp ECCSSGG-GCCEEEEEEEETTEEEEEEECCSS-HHHHHHHHTHHHHHHH
T ss_pred EEECccc-cCcEEEEEEEECCEEEEEEEcCCH-HHHHHHHHHHHHHHHH
Confidence 4445531 146889999999999999998776 5677777777766543
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=36.89 E-value=18 Score=20.92 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=23.7
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
-|.|.++++|+-|.+.+.- .+.+.|..|.|.|.-
T Consensus 48 FV~F~~~~~A~~Ai~~~~~-----------~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 48 FVEFSHLQDATRWMEANQH-----------SLNILGQKVSMHYSD 81 (91)
T ss_dssp EEECSSHHHHHHHHHTTTT-----------EEEETTEEEEEECCC
T ss_pred EEEecCHHHHHHHHHhcCC-----------CeEECCEEEEEEEcC
Confidence 4889999999999876432 234556667777653
No 15
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=32.81 E-value=20 Score=21.99 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=25.5
Q ss_pred EeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEec
Q 044191 11 VDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAV 55 (87)
Q Consensus 11 VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~ 55 (87)
|.|+++++|+-|.+.|-= ..+.|..|.|++.++
T Consensus 48 Vey~~~~eA~~Ai~~Ln~------------~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 48 CKYTTREEANKAQMALNN------------CVLANTTIFAESPSE 80 (89)
T ss_dssp EEESSHHHHHHHHHHHTT------------EEETTEEEEEECCCH
T ss_pred EEECCHHHHHHHHHHhcC------------CEECCcEEEEEECCH
Confidence 789999999999998742 345667788887753
No 16
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=30.38 E-value=12 Score=21.87 Aligned_cols=16 Identities=0% Similarity=0.138 Sum_probs=14.4
Q ss_pred EeCCChhHHHHHHhhc
Q 044191 11 VDYESNENASIVYAAL 26 (87)
Q Consensus 11 VpF~s~~~A~ia~~sL 26 (87)
|-|.+.+.|+-|.+.|
T Consensus 62 V~f~~~~~A~~Ai~~l 77 (97)
T 2xnq_A 62 IQFDNPQSVRDAIEXE 77 (97)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHc
Confidence 7899999999999876
No 17
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.37 E-value=24 Score=21.21 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=15.5
Q ss_pred EeCCChhHHHHHHhhccc
Q 044191 11 VDYESNENASIVYAALAI 28 (87)
Q Consensus 11 VpF~s~~~A~ia~~sL~v 28 (87)
|.|.+.++|+-|.+.+.-
T Consensus 56 Vef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 56 LELATEEAAITMVNYYSA 73 (101)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHhcc
Confidence 789999999999987754
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=28.82 E-value=27 Score=19.09 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=15.0
Q ss_pred EEeCCChhHHHHHHhhc
Q 044191 10 EVDYESNENASIVYAAL 26 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL 26 (87)
-|.|.++++|+-|.+.|
T Consensus 47 fV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 47 FVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp EEEESCHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHh
Confidence 47899999999999876
No 19
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.67 E-value=42 Score=18.42 Aligned_cols=17 Identities=6% Similarity=0.188 Sum_probs=15.2
Q ss_pred EEeCCChhHHHHHHhhc
Q 044191 10 EVDYESNENASIVYAAL 26 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL 26 (87)
-|-|.+++.|+-|.+.|
T Consensus 52 fV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 52 FIQFATRQAAEVAAEKS 68 (85)
T ss_dssp EEEESSHHHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHh
Confidence 47899999999999987
No 20
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=28.49 E-value=45 Score=20.66 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=24.0
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEE
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFE 53 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~ 53 (87)
-|-|.+++.|.-|.+.|. ...+.|..|.|.|.
T Consensus 140 fV~f~~~~~A~~A~~~l~------------g~~~~g~~i~v~~a 171 (175)
T 1fje_B 140 YIEFKSEADAEKNLEEKQ------------GAEIDGRSVSLYYT 171 (175)
T ss_dssp EEECSSHHHHHHHHHHHT------------EEEETTEEEEEEEC
T ss_pred EEEECCHHHHHHHHHHhC------------CCEECCeEEEEEec
Confidence 488999999999998773 13455777777775
No 21
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=28.02 E-value=28 Score=19.14 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.5
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 53 fV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 53 FVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp EEEESSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998763
No 22
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=27.88 E-value=56 Score=18.02 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=13.5
Q ss_pred EEeCCChhHHHHHHhh
Q 044191 10 EVDYESNENASIVYAA 25 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~s 25 (87)
-|.|.+++.|+-|.+.
T Consensus 57 fV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 57 FILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEESSTHHHHHHHHS
T ss_pred EEEECCHHHHHHHHHh
Confidence 4789999999998864
No 23
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.59 E-value=33 Score=19.34 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.4
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 48 fV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 48 FVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp EECCSCHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHcc
Confidence 388999999999998764
No 24
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=26.44 E-value=32 Score=18.99 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=15.2
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 51 fV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 51 FLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp EEEESSHHHHHHHHTTSS
T ss_pred EEEECCHHHHHHHHHHhc
Confidence 478999999999998763
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=36 Score=19.10 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|-|.++++|+-|.+.|.
T Consensus 62 fV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 62 FILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp EEEESCHHHHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHcC
Confidence 478999999999998763
No 26
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=25.77 E-value=51 Score=19.74 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=19.2
Q ss_pred EEEEEEECCEEEEEEEeccCchHHHH
Q 044191 38 KRQISVIDGKLLVHFEAVEARFPRAL 63 (87)
Q Consensus 38 ~r~l~v~g~~L~v~~~a~d~r~LRvs 63 (87)
..+++++||.|.|++++.- -+.|.-
T Consensus 32 tvtytldgndleiritgvp-eqvrke 56 (85)
T 2kl8_A 32 TVTYTLDGNDLEIRITGVP-EQVRKE 56 (85)
T ss_dssp EEEEEECSSCEEEEEESCC-HHHHHH
T ss_pred eEEEEecCCeeEEEEecCh-HHHHHH
Confidence 6789999999999999853 344443
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=25.69 E-value=33 Score=18.93 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=22.9
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
-|.|.++++|+-|.+.|.- . .+.|..|.|+|..
T Consensus 52 fV~f~~~~~A~~A~~~l~g-~-----------~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 52 FVSFFNKWDAENAIQQMGG-Q-----------WLGGRQIRTNWAT 84 (87)
T ss_dssp EEEESSHHHHHHHHHHHTT-C-----------EETTEECEEEEEC
T ss_pred EEEECCHHHHHHHHHHcCC-C-----------EECCeEEEEEecC
Confidence 4789999999999987742 1 2345666666653
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.39 E-value=40 Score=18.97 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=22.8
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
-|-|.++++|+-|.+.|.- . .+.|..|.|.|.-
T Consensus 52 fV~f~~~~~A~~A~~~l~g------~------~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 52 FINFASFDASDAAIEAMNG------Q------YLCNRPITVSYAF 84 (96)
T ss_dssp EEEBSSHHHHHHHHHTTTT------C------EETTEECEEEESC
T ss_pred EEEECCHHHHHHHHHHcCC------C------EECCEEEEEEEec
Confidence 4889999999999986631 1 1345666666643
No 29
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=25.02 E-value=34 Score=18.83 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=23.4
Q ss_pred EEEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 9 FEVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 9 L~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
--|.|.++++|+-|.+.|.- . .+.|..|.|.+..
T Consensus 50 afV~f~~~~~a~~A~~~l~g-~-----------~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 50 AYVEFENPDEAEKALKHMDG-G-----------QIDGQEITATAVL 83 (88)
T ss_dssp EEEEESSHHHHHHHHHHHTT-C-----------EETTEECEEEEEC
T ss_pred EEEEEecHHHHHHHHHHcCC-C-----------eECCeEEEEEECC
Confidence 34889999999999987641 1 2345666666653
No 30
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.88 E-value=35 Score=18.80 Aligned_cols=17 Identities=35% Similarity=0.387 Sum_probs=14.6
Q ss_pred EEeCCChhHHHHHHhhc
Q 044191 10 EVDYESNENASIVYAAL 26 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL 26 (87)
-|.|.++++|+-|.+.|
T Consensus 51 fV~f~~~~~a~~A~~~l 67 (85)
T 1x4e_A 51 FVDFDSPSAAQKAVTAL 67 (85)
T ss_dssp EEEESCHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHh
Confidence 48899999999998865
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.80 E-value=77 Score=18.08 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.4
Q ss_pred EEeCCChhHHHHHHhhc
Q 044191 10 EVDYESNENASIVYAAL 26 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL 26 (87)
-|-|.+.++|+-|.+.|
T Consensus 62 fV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 62 FVDFITKQDAKKAFNAL 78 (107)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHh
Confidence 48899999999999987
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.50 E-value=45 Score=18.93 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=15.4
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 56 fV~f~~~~~a~~A~~~l~ 73 (99)
T 2div_A 56 FVEFADLATAEKCLHKIN 73 (99)
T ss_dssp EEECSCHHHHHHHHHTTT
T ss_pred EEEeCCHHHHHHHHHHHc
Confidence 478999999999998664
No 33
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.44 E-value=40 Score=19.10 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 61 fV~f~~~~~a~~Ai~~l~ 78 (98)
T 2cqp_A 61 MVAFESRDEATAAVIDLN 78 (98)
T ss_dssp EEEESCHHHHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998663
No 34
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.39 E-value=35 Score=19.45 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.4
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 57 fV~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 57 YIQYESLDAAQAACAKMR 74 (97)
T ss_dssp EEEESSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHHC
Confidence 378999999999998774
No 35
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.27 E-value=41 Score=19.23 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=23.2
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
-|.|.++++|+-|++.|.- ..+.|..|.|.|.-
T Consensus 58 fV~f~~~~~A~~A~~~l~g------------~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 58 FVDFNSEEDAKAAKEAMED------------GEIDGNKVTLDWAK 90 (102)
T ss_dssp EEECSSHHHHHHHHHHHTT------------CEETTEECEEEECC
T ss_pred EEEECCHHHHHHHHHHhCC------------CeECCeEEEEEEec
Confidence 4889999999999987632 12346666666654
No 36
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.18 E-value=34 Score=21.61 Aligned_cols=18 Identities=39% Similarity=0.283 Sum_probs=15.8
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.+.++|+-|++.|-
T Consensus 66 FVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 66 MVEFESVLCAQKAKAALN 83 (124)
T ss_dssp EEEESSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 478999999999999875
No 37
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=24.00 E-value=42 Score=19.22 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 41 fV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 41 FVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp EEECSSHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHC
Confidence 478999999999998764
No 38
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.68 E-value=42 Score=19.15 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.6
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|-|.++++|+-|.+.|.
T Consensus 58 fV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 58 FVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp EEECSSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998764
No 39
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.43 E-value=39 Score=19.05 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=24.1
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEec
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAV 55 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~ 55 (87)
-|.|.++++|+-|.+.|.- ..+.|..|.|+|.-.
T Consensus 48 fV~f~~~~~a~~A~~~l~g------------~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 48 FVHMERAEDAVEAIRGLDN------------TEFQGKRMHVQLSTS 81 (92)
T ss_dssp EEEESCHHHHHHHHHHHTT------------EEETTEEEEEEESSC
T ss_pred EEEECCHHHHHHHHHHhCC------------CeeCCcEEEEEEccC
Confidence 3789999999999987631 124567777777543
No 40
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.39 E-value=39 Score=18.95 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.0
Q ss_pred EeCCChhHHHHHHhhcc
Q 044191 11 VDYESNENASIVYAALA 27 (87)
Q Consensus 11 VpF~s~~~A~ia~~sL~ 27 (87)
|.|.++++|+-|.+.|.
T Consensus 48 V~f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 48 VHMEKEADAKAAIAQLN 64 (90)
T ss_dssp EEESCHHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHhC
Confidence 78999999999998764
No 41
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.23 E-value=49 Score=18.88 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=24.3
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEec
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAV 55 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~ 55 (87)
-|.|.++++|+-|++.|.- ..+.|..|.|.|...
T Consensus 57 fV~f~~~~~A~~A~~~l~g------------~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 57 FIEFASFEDAKEALNSCNK------------REIEGRAIRLELQGP 90 (101)
T ss_dssp EEECSSHHHHHHHHHHTSS------------EEETTEEEEEEECSS
T ss_pred EEEECCHHHHHHHHHHhCC------------CEeCCeEEEEEEcCC
Confidence 4889999999999987631 234466777777543
No 42
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=23.18 E-value=94 Score=19.94 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=48.2
Q ss_pred eEEEEeCCCh--hHHHHHHhhcccCcccCccceEEEEEEECCEE----EEEEEeccCchHHHHHHHHHHHHHHHHHHHHh
Q 044191 7 NDFEVDYESN--ENASIVYAALAIDKELQPDKVKRQISVIDGKL----LVHFEAVEARFPRALFSAFVDVLTLETKTIEQ 80 (87)
Q Consensus 7 ~~L~VpF~s~--~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L----~v~~~a~d~r~LRvsvnsfld~l~Lv~~tm~~ 80 (87)
+-++.||+.+ +++.-++..|+++----|..+.|.++.+.+.- +=-|+. |.+-..|+++= ..-+.+
T Consensus 12 lqV~F~~~gP~geE~~~~f~~lA~si~~epGLiwKiWte~e~t~~aGGiYLFes------~~~AeaY~~~h---~arl~~ 82 (113)
T 2hiq_A 12 LQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTD------EKSALAYLEKH---TARLKN 82 (113)
T ss_dssp EEEEEECCCCCHHHHHHHSHHHHHHHTTSTTEEEEEEEEETTTTEEEEEEEESS------HHHHHHHHHHH---HHHHGG
T ss_pred EEEEecCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCeeeEEEEeCC------HHHHHHHHHHH---HHHHHH
Confidence 5778899888 78888899999988888998999888775321 113333 55667777765 346666
Q ss_pred hCC
Q 044191 81 FGQ 83 (87)
Q Consensus 81 f~~ 83 (87)
||-
T Consensus 83 ~Gi 85 (113)
T 2hiq_A 83 LGV 85 (113)
T ss_dssp GTC
T ss_pred cCC
Confidence 763
No 43
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.10 E-value=89 Score=19.25 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.6
Q ss_pred EeCCChhHHHHHHhhcccC
Q 044191 11 VDYESNENASIVYAALAID 29 (87)
Q Consensus 11 VpF~s~~~A~ia~~sL~vD 29 (87)
|.|.++++|+-|.+.|.-+
T Consensus 67 Vef~~~~~A~~Ai~~l~~~ 85 (112)
T 1x4f_A 67 IEMETREDAMAMVDHCLKK 85 (112)
T ss_dssp EECSSHHHHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHHHhccC
Confidence 8899999999999988644
No 44
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=23.00 E-value=38 Score=21.77 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=16.1
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|++.++|+-|++.|.
T Consensus 70 FVef~~~~~A~~Ai~~Ln 87 (130)
T 3zzy_A 70 LLQYADPVSAQHAKLSLD 87 (130)
T ss_dssp EEEESCHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHcC
Confidence 488999999999999875
No 45
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.63 E-value=40 Score=18.90 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 46 fV~f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 46 FVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp EEEESSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhc
Confidence 378999999999998764
No 46
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.56 E-value=53 Score=18.72 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=23.6
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEec
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAV 55 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~ 55 (87)
-|-|.+.++|+-|.+.|.- .. +.|..|.|.|...
T Consensus 54 fV~f~~~~~a~~A~~~l~g-~~-----------~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 54 FCEYQDQETALSAMRNLNG-RE-----------FSGRALRVDNAAS 87 (104)
T ss_dssp EEECSCHHHHHHHHHHSSS-BS-----------CSSSCBEEEETTC
T ss_pred EEEECCHHHHHHHHHHhCC-Ce-----------eCCcEEEEEeCCC
Confidence 4889999999999987631 11 2456677776543
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.49 E-value=41 Score=18.85 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhc
Q 044191 10 EVDYESNENASIVYAAL 26 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL 26 (87)
-|-|.++++|+-|++.|
T Consensus 61 fV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 61 FVYFENVDDAKEAKERA 77 (95)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHh
Confidence 48899999999999887
No 48
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=22.12 E-value=41 Score=19.43 Aligned_cols=32 Identities=6% Similarity=0.183 Sum_probs=23.3
Q ss_pred EeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 11 VDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 11 VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
|.|.++++|+-|.+.|.- ..++|..|.|.|..
T Consensus 50 V~f~~~~~a~~A~~~l~g------------~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 50 IHFDERDGAVKAMEEMNG------------KDLEGENIEIVFAK 81 (103)
T ss_dssp EEESSHHHHHHHHHHHTT------------EEETTEEEEEEECC
T ss_pred EEeCCHHHHHHHHHHHCC------------CccCCCEEEEEEcC
Confidence 789999999999987631 12456677777754
No 49
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=21.74 E-value=51 Score=18.55 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.4
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 49 fV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 49 LVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp EECC-CHHHHHHHHHHGG
T ss_pred EEEECCHHHHHHHHHHcC
Confidence 478999999999998764
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.72 E-value=48 Score=18.75 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.5
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.+++.|+-|.+.|.
T Consensus 54 fV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 54 FVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp EEEESSHHHHHHHHHHST
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998763
No 51
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.48 E-value=48 Score=18.89 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|-|.++++|+-|.+.|.
T Consensus 55 fV~f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 55 FIRLETRTLAEIAKVELD 72 (99)
T ss_dssp EEECSSSHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 378999999999998764
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.48 E-value=44 Score=19.45 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.+.++|+-|.+.|.
T Consensus 65 fV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 65 FVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp EEEESCHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHcC
Confidence 478999999999998664
No 53
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=21.46 E-value=48 Score=19.37 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 66 fV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 66 FVQYSNERHARAAVLGEN 83 (110)
T ss_dssp EEECSSSHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHcC
Confidence 388999999999998763
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.45 E-value=43 Score=19.09 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=23.4
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
-|.|.++++|+-|.+.|.- ..+.|..|.|.|.-
T Consensus 62 fV~f~~~~~a~~A~~~l~g------------~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 62 YVEYENESQASQAVMKMDG------------MTIKENIIKVAISN 94 (100)
T ss_dssp EEEESSHHHHHHHHHHHTT------------EESSSCEEEEEECC
T ss_pred EEEECCHHHHHHHHHHhCC------------CEECCEEEEEEECC
Confidence 4789999999999987641 22346667776653
No 55
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=21.39 E-value=55 Score=19.61 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=15.5
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.+.++|+-|.+.|.
T Consensus 52 fV~F~~~~~A~~Ai~~l~ 69 (116)
T 2fy1_A 52 FITFENPADAKNAAKDMN 69 (116)
T ss_dssp EEECSSHHHHHHHHHHCS
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998764
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.37 E-value=45 Score=18.70 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.5
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|-|.++++|+-|.+.|.
T Consensus 51 fV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 51 FITFSDSECARRALEQLN 68 (95)
T ss_dssp EEEESCHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998764
No 57
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=21.31 E-value=44 Score=18.74 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.8
Q ss_pred EEeCCChhHHHHHHhhc
Q 044191 10 EVDYESNENASIVYAAL 26 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL 26 (87)
-|-|.++++|+-|.+.|
T Consensus 61 fV~f~~~~~a~~Ai~~l 77 (95)
T 2ek1_A 61 MVAFESRDEATAAVIDL 77 (95)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHh
Confidence 48899999999999865
No 58
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.27 E-value=79 Score=18.82 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.3
Q ss_pred CccceeEEEEeCCChhHHHHHHhh
Q 044191 2 WFFPCNDFEVDYESNENASIVYAA 25 (87)
Q Consensus 2 ~~~~~~~L~VpF~s~~~A~ia~~s 25 (87)
|++.. .+-|.|||.+.|.-.+++
T Consensus 50 ~~~~~-~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 50 FEHKA-QVILEFPSREDAYNWYHS 72 (94)
T ss_dssp CCCSE-EEEEEESSHHHHHHHHHS
T ss_pred CCCCe-EEEEECCCHHHHHHHHCC
Confidence 44444 889999999999988775
No 59
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.24 E-value=49 Score=19.31 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.4
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 69 fV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 69 TVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp EEEBSSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHcC
Confidence 488999999999998763
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.14 E-value=50 Score=18.95 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.6
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|-|.++++|+-|.+.|.
T Consensus 61 fV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 61 FVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp EEEESSHHHHHHHHHHSS
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998765
No 61
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.10 E-value=52 Score=18.74 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 60 fV~f~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 60 FLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp EEECSSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 378999999999998763
No 62
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=20.95 E-value=45 Score=18.77 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=25.4
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEeccC
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAVEA 57 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~d~ 57 (87)
-|.|.+.++|+-|.+.|.- ..+.|..|.|.|.-...
T Consensus 55 fV~f~~~~~A~~A~~~l~g------------~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 55 FVIFKEVSSATNALRSMQG------------FPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp EEEESSHHHHHHHHHHHTT------------CEETTEECEEEECSSCC
T ss_pred EEEeCCHHHHHHHHHHhCC------------CEECCcEEEEEEccCCC
Confidence 3789999999999987642 12356777777765543
No 63
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=20.94 E-value=45 Score=19.53 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=22.8
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEE
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFE 53 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~ 53 (87)
-|-|.++++|+-|.+.|. . ..+.|..|.|.|+
T Consensus 65 fV~f~~~~~A~~Ai~~ln------g------~~~~gr~l~V~~A 96 (99)
T 4fxv_A 65 FVNYVTAKDAERAINTLN------G------LRLQSKTIKVSYA 96 (99)
T ss_dssp EEEESSHHHHHHHHHHHT------T------CEETTEECEEEEC
T ss_pred EEEECCHHHHHHHHHHhC------C------CEECCEEEEEEEe
Confidence 388999999999998763 1 1245666777664
No 64
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.82 E-value=51 Score=18.67 Aligned_cols=34 Identities=21% Similarity=0.071 Sum_probs=24.1
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEec
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEAV 55 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a~ 55 (87)
-|-|.++++|+-|.+.|.- ..+.|..|.|.+.-.
T Consensus 54 fV~f~~~~~a~~A~~~l~g------------~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 54 FVTFMFPEHAVKAYAEVDG------------QVFQGRMLHVLPSTI 87 (99)
T ss_dssp EEEESSHHHHHHHHHHTTT------------EESSSCEEEEEECCC
T ss_pred EEEECCHHHHHHHHHHhCC------------CEECCcEEEEEEcCC
Confidence 4889999999999987631 223467777777543
No 65
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=20.79 E-value=46 Score=18.53 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.3
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.+.++|+-|.+.|.
T Consensus 52 fV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 52 VVKFESPEVAERACRMMN 69 (92)
T ss_dssp EEEESSHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 478999999999988764
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=20.78 E-value=45 Score=19.20 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=22.6
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEE
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFE 53 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~ 53 (87)
-|.|.++++|+-|.+.|.- ..+.|..|.|.|.
T Consensus 74 fV~f~~~~~a~~A~~~l~g------------~~~~g~~l~V~~a 105 (107)
T 3ulh_A 74 DVHFERKADALKAMKQYNG------------VPLDGRPMNIQLV 105 (107)
T ss_dssp EEEESSHHHHHHHHHHHTT------------CEETTEECEEEEE
T ss_pred EEEECCHHHHHHHHHHhCC------------CEeCCcEEEEEEe
Confidence 4789999999999987631 1235566666664
No 67
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=20.65 E-value=1.3e+02 Score=20.26 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=23.3
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEE-CCEEEEEEE
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVI-DGKLLVHFE 53 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~-g~~L~v~~~ 53 (87)
-|-|.+.++|+-|.+.|.= ..+. |..|.|.|.
T Consensus 248 fV~f~~~~~A~~A~~~l~g------------~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 248 FVEFDNEVQAGAARDALQG------------FKITQNNAMKISFA 280 (282)
T ss_pred EEEeCCHHHHHHHHHHcCC------------cEeCCCCEEEEEEe
Confidence 4789999999999998742 2233 667777774
No 68
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.56 E-value=1.2e+02 Score=17.30 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.6
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 56 fV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 56 FVEYESHRAAAMARRKLM 73 (109)
T ss_dssp EEEESSHHHHHHHHTTTT
T ss_pred EEEecCHHHHHHHHHHhh
Confidence 478999999999998873
No 69
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.50 E-value=47 Score=19.06 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=23.4
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEEe
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFEA 54 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~a 54 (87)
-|.|.++++|+-|.+.|.- ..+.|..|.|.|.-
T Consensus 59 fV~f~~~~~a~~A~~~l~g------------~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 59 FVEFYEHRDAAAALAAMNG------------RKILGKEVKVNWAT 91 (103)
T ss_dssp EEEESSHHHHHHHHHHHTT------------EEETTEEEEEEECC
T ss_pred EEEECCHHHHHHHHHHhCC------------CCcCCCeEEEEECC
Confidence 3789999999999986641 12446677777754
No 70
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.41 E-value=61 Score=19.15 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.5
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.++++|+-|.+.|.
T Consensus 68 fV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 68 SVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp EEECSCHHHHHHHHHHST
T ss_pred EEEECCHHHHHHHHHHcC
Confidence 488999999999998764
No 71
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Probab=20.29 E-value=1.2e+02 Score=21.99 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.1
Q ss_pred ceEEEEEEE-CCEEEEEEEeccCc
Q 044191 36 KVKRQISVI-DGKLLVHFEAVEAR 58 (87)
Q Consensus 36 ~v~r~l~v~-g~~L~v~~~a~d~r 58 (87)
.++.+|+++ ++.|.|+++|++.+
T Consensus 138 ~~~vtY~L~~~~~L~i~~~a~~d~ 161 (347)
T 1nsx_A 138 EMSVTHSFDDDNKWKIHYEAISDK 161 (347)
T ss_dssp EEEEEEEEETTSEEEEEEEEEESS
T ss_pred EEEEEEEECCCCeEEEEEEEEcCC
Confidence 568889998 69999999997554
No 72
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.16 E-value=53 Score=19.23 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=21.7
Q ss_pred EEeCCChhHHHHHHhhcccCcccCccceEEEEEEECCEEEEEEE
Q 044191 10 EVDYESNENASIVYAALAIDKELQPDKVKRQISVIDGKLLVHFE 53 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~vD~e~~p~~v~r~l~v~g~~L~v~~~ 53 (87)
-|.|.+.+.|+-|. .|. ...+.|..|.|.+.
T Consensus 71 fV~f~~~~~a~~A~-~l~------------g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 71 YVEFCEIQSVPLAI-GLT------------GQRLLGVPIIVQAS 101 (114)
T ss_dssp EEEESCGGGHHHHH-HHT------------TEEETTEEEEEEEH
T ss_pred EEEeCcHHHHHHHH-HcC------------CCEeCCeEEEEEec
Confidence 47899999999998 652 12345667777764
No 73
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.07 E-value=62 Score=18.85 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=15.7
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|.|.+.+.|+-|.+.|.
T Consensus 71 fV~f~~~~~a~~Ai~~l~ 88 (115)
T 2cpx_A 71 FITFPNKEIAWQALHLVN 88 (115)
T ss_dssp EEECSSHHHHHHHHHHST
T ss_pred EEEECCHHHHHHHHHHhC
Confidence 488999999999998774
No 74
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.03 E-value=55 Score=18.69 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=15.4
Q ss_pred EEeCCChhHHHHHHhhcc
Q 044191 10 EVDYESNENASIVYAALA 27 (87)
Q Consensus 10 ~VpF~s~~~A~ia~~sL~ 27 (87)
-|-|.++++|+-|.+.|.
T Consensus 55 fV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 55 FVKFTDELEQKRALTECQ 72 (104)
T ss_dssp EEEESCHHHHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHcc
Confidence 378999999999998764
Done!