BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044195
(1024 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 369 LKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVL----NNDICNLPEENC----N 420
L E I+ +CKG PL +G LLR P WE+ L N + + +
Sbjct: 312 LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEA 369
Query: 421 IIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLG 480
+ A+ +S L +K + S+ K + + + LW E ++ED+
Sbjct: 370 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEVEDIL 421
Query: 481 REFVQELLSRSFFQRSSKNASRFLMHDLINDL 512
+EFV + S F R+ K + R+ +HDL D
Sbjct: 422 QEFVNK--SLLFCDRNGK-SFRYYLHDLQVDF 450
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 369 LKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVL----NNDICNLPEENC----N 420
L E I+ +CKG PL +G LLR P WE+ L N + + +
Sbjct: 306 LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEA 363
Query: 421 IIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLG 480
+ A+ +S L +K + S+ K + + + LW E ++ED+
Sbjct: 364 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEVEDIL 415
Query: 481 REFVQELLSRSFFQRSSKNASRFLMHDLINDL 512
+EFV + S F R+ K + R+ +HDL D
Sbjct: 416 QEFVNK--SLLFCDRNGK-SFRYYLHDLQVDF 444
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 11 ASFELLIKKLASL--ELFTQHEKLKADFMRWKDKMEMIQAVLADAED--RQTKDKSVKKW 66
A+ LI KL L E F H+ +K + ++E A L + R+ D K W
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 67 LDKLQNLAYDVEDILDEF 84
D+++ L+Y +ED++D+F
Sbjct: 61 ADEVRELSYVIEDVVDKF 78
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 373 GEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVL----NNDICNLPEENC----NIIPA 424
I+ +CKG PL +G LLR P W + L N + + + + A
Sbjct: 317 AHSIIKECKGSPLVVSLIGALLRDF--PNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 374
Query: 425 LGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLGREFV 484
+ +S L +K + S+ K + + + LW E ++ED+ +EFV
Sbjct: 375 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEEVEDILQEFV 426
Query: 485 QELLSRSFFQRSSKNASRFLMHDLINDLARWAAGGICFRLEYTLESENRQMFSQSLRHF 543
+ S F R+ K+ +L HDL D + + L+ +R+M +Q R++
Sbjct: 427 NK--SLLFCNRNGKSFCYYL-HDLQVDF-------LTEKNRSQLQDLHRKMVTQFQRYY 475
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 373 GEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVL----NNDICNLPEENC----NIIPA 424
I+ +CKG PL +G LLR P W + L N + + + + A
Sbjct: 310 AHSIIKECKGSPLVVSLIGALLRDF--PNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367
Query: 425 LGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLGREFV 484
+ +S L +K + S+ K + + + LW E ++ED+ +EFV
Sbjct: 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEEVEDILQEFV 419
Query: 485 QELLSRSFFQRSSKNASRFLMHDLINDLARWAAGGICFRLEYTLESENRQMFSQSLRHF 543
+ S F R+ K+ +L HDL D + + L+ +R+M +Q R++
Sbjct: 420 NK--SLLFCNRNGKSFCYYL-HDLQVDF-------LTEKNRSQLQDLHRKMVTQFQRYY 468
>pdb|2XDQ|B Chain B, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 511
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 34/177 (19%)
Query: 622 LNLSRT---NIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLE 678
L S+T ++ I+ + +N H DCR LK+L D+G L + VH L+
Sbjct: 159 LGTSKTPTPSVNIIGITTLGFHNQH-----DCRELKQLMADLGIQVNLVIPAAATVHDLQ 213
Query: 679 EMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSL---ENVKCVGDAIE 735
+P+ + L R + G + RE Q ++ I+ + E +C+ AI+
Sbjct: 214 RLPQAWFNLVPY----REIGGLTAQYLEREFG-----QPSVRITPMGVVETARCI-RAIQ 263
Query: 736 AQLNRK---VNLEALV---------LRWCNRSC-ISNIRNEDAVDLETQTRVLDMLK 779
LN + VN EA + W +RS N+ + AV T M K
Sbjct: 264 GVLNAQGAGVNYEAFIEQQTREVSQAAWFSRSIDCQNLTGKKAVVFGDNTHAAAMTK 320
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 603 YCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGN 662
+ I LP I NL++L+ L + + + L +I+ L L + L C L+ G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 663 LTKLHHLRNSNVHSLEEMPKGFGKLTCLTTL 693
L L + +L +P +LT L L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,679,303
Number of Sequences: 62578
Number of extensions: 1083333
Number of successful extensions: 2702
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2679
Number of HSP's gapped (non-prelim): 35
length of query: 1024
length of database: 14,973,337
effective HSP length: 109
effective length of query: 915
effective length of database: 8,152,335
effective search space: 7459386525
effective search space used: 7459386525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)