Query 044195
Match_columns 1024
No_of_seqs 573 out of 4634
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.8E-84 1.3E-88 763.9 46.9 828 9-922 5-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.8E-63 1.9E-67 620.2 50.5 689 179-971 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.5E-42 1.6E-46 370.0 14.3 277 186-469 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.4E-30 3E-35 330.5 21.8 429 561-1021 138-584 (968)
5 PLN00113 leucine-rich repeat r 100.0 7.9E-30 1.7E-34 323.6 21.5 394 590-1020 137-559 (968)
6 PLN03210 Resistant to P. syrin 99.9 1.4E-22 2.9E-27 256.5 27.2 227 456-696 470-712 (1153)
7 KOG0472 Leucine-rich repeat pr 99.9 5.7E-26 1.2E-30 230.2 -6.4 394 585-1020 83-540 (565)
8 KOG4194 Membrane glycoprotein 99.9 2E-23 4.4E-28 221.2 3.5 360 564-1016 79-447 (873)
9 KOG0444 Cytoskeletal regulator 99.9 5.5E-24 1.2E-28 226.5 -5.4 363 539-950 8-379 (1255)
10 KOG4194 Membrane glycoprotein 99.9 7.6E-23 1.7E-27 216.9 2.9 335 594-1019 79-427 (873)
11 KOG0618 Serine/threonine phosp 99.8 1.2E-22 2.5E-27 227.6 -5.9 111 556-675 38-148 (1081)
12 KOG0444 Cytoskeletal regulator 99.8 1.9E-22 4.1E-27 214.9 -7.7 359 591-1022 5-376 (1255)
13 KOG0472 Leucine-rich repeat pr 99.8 5.9E-22 1.3E-26 201.3 -9.8 385 558-992 86-540 (565)
14 KOG0618 Serine/threonine phosp 99.7 1E-19 2.2E-24 204.3 -6.1 400 587-1021 39-489 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 4.1E-14 8.8E-19 165.7 15.5 158 807-995 302-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 3.9E-14 8.4E-19 165.9 13.7 254 593-944 201-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 2E-13 4.3E-18 161.3 12.2 81 593-682 178-258 (754)
18 PRK04841 transcriptional regul 99.5 4.3E-12 9.3E-17 160.9 25.0 292 181-517 14-332 (903)
19 KOG4237 Extracellular matrix p 99.4 1.3E-14 2.9E-19 148.3 -6.4 383 594-1017 68-497 (498)
20 KOG4658 Apoptotic ATPase [Sign 99.3 7.4E-13 1.6E-17 159.0 6.6 130 560-698 520-652 (889)
21 PRK00411 cdc6 cell division co 99.3 2.5E-10 5.3E-15 129.5 25.2 302 179-496 28-358 (394)
22 PRK15370 E3 ubiquitin-protein 99.3 3.1E-12 6.7E-17 151.4 9.1 90 593-693 199-288 (754)
23 KOG0617 Ras suppressor protein 99.3 4.2E-14 9E-19 127.6 -6.3 129 557-694 27-156 (264)
24 KOG4237 Extracellular matrix p 99.3 1.4E-13 3.1E-18 140.8 -4.0 374 581-990 79-498 (498)
25 KOG0617 Ras suppressor protein 99.3 7.7E-14 1.7E-18 125.9 -6.1 87 587-675 27-113 (264)
26 TIGR02928 orc1/cdc6 family rep 99.2 3.1E-09 6.6E-14 119.3 28.4 300 181-496 15-350 (365)
27 COG2909 MalT ATP-dependent tra 99.2 9.9E-10 2.1E-14 124.9 21.4 294 182-518 20-339 (894)
28 TIGR03015 pepcterm_ATPase puta 99.2 1.5E-09 3.3E-14 116.1 20.9 182 208-394 43-242 (269)
29 PF01637 Arch_ATPase: Archaeal 99.2 1.1E-10 2.3E-15 122.4 11.0 195 183-389 1-233 (234)
30 TIGR00635 ruvB Holliday juncti 99.1 1.1E-09 2.3E-14 119.4 17.0 276 182-497 5-290 (305)
31 PRK00080 ruvB Holliday junctio 99.1 2.1E-09 4.5E-14 117.6 16.6 277 181-497 25-311 (328)
32 COG2256 MGS1 ATPase related to 99.0 1.7E-09 3.7E-14 112.7 11.8 222 178-435 27-266 (436)
33 PTZ00112 origin recognition co 99.0 3.6E-08 7.7E-13 113.1 20.0 300 180-497 754-1087(1164)
34 PF05729 NACHT: NACHT domain 98.9 4.4E-09 9.6E-14 103.4 10.4 142 209-356 1-162 (166)
35 cd00116 LRR_RI Leucine-rich re 98.9 1.5E-10 3.2E-15 127.8 -0.9 238 558-842 18-290 (319)
36 COG3899 Predicted ATPase [Gene 98.9 3.9E-08 8.5E-13 119.4 19.6 308 183-515 2-384 (849)
37 cd00116 LRR_RI Leucine-rich re 98.9 4.1E-10 8.8E-15 124.3 0.5 268 588-901 18-318 (319)
38 KOG4341 F-box protein containi 98.7 3.2E-10 6.9E-15 117.8 -5.1 134 859-996 293-442 (483)
39 PRK06893 DNA replication initi 98.7 1.1E-07 2.3E-12 98.0 13.3 156 208-394 39-207 (229)
40 KOG4341 F-box protein containi 98.7 2.3E-10 4.9E-15 118.9 -6.7 299 640-988 138-460 (483)
41 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.4E-13 98.4 4.5 127 560-698 16-150 (175)
42 PRK13342 recombination factor 98.7 2.6E-07 5.7E-12 104.3 16.3 176 182-391 13-197 (413)
43 PF13401 AAA_22: AAA domain; P 98.7 6.1E-08 1.3E-12 90.9 8.2 118 207-326 3-125 (131)
44 TIGR03420 DnaA_homol_Hda DnaA 98.6 3.1E-07 6.6E-12 95.4 11.7 171 186-393 22-204 (226)
45 KOG3207 Beta-tubulin folding c 98.6 1.6E-08 3.5E-13 106.0 1.6 149 538-693 121-276 (505)
46 PRK05564 DNA polymerase III su 98.6 1.2E-06 2.7E-11 95.1 16.4 178 182-389 5-189 (313)
47 PRK14961 DNA polymerase III su 98.6 1.7E-06 3.7E-11 95.8 17.2 175 182-387 17-217 (363)
48 COG4886 Leucine-rich repeat (L 98.6 4.2E-08 9E-13 111.5 4.6 105 587-694 110-215 (394)
49 PF13191 AAA_16: AAA ATPase do 98.5 1.4E-07 3.1E-12 94.5 7.1 47 182-231 1-47 (185)
50 PRK04195 replication factor C 98.5 4.8E-06 1.1E-10 96.0 20.6 247 181-469 14-271 (482)
51 KOG2028 ATPase related to the 98.5 1E-06 2.2E-11 90.2 12.7 176 178-384 141-330 (554)
52 PRK12402 replication factor C 98.5 1.7E-06 3.7E-11 96.1 15.9 198 181-389 15-225 (337)
53 PF05496 RuvB_N: Holliday junc 98.5 1.4E-06 3.1E-11 85.3 13.1 182 181-395 24-226 (233)
54 PRK14960 DNA polymerase III su 98.5 1.6E-06 3.5E-11 98.7 15.4 178 181-388 15-217 (702)
55 KOG3207 Beta-tubulin folding c 98.5 9E-09 1.9E-13 107.8 -2.3 159 736-922 115-281 (505)
56 PRK07003 DNA polymerase III su 98.5 4E-06 8.6E-11 96.6 18.1 180 181-390 16-221 (830)
57 PTZ00202 tuzin; Provisional 98.5 4.2E-06 9.1E-11 89.5 17.0 167 178-356 259-433 (550)
58 PRK14949 DNA polymerase III su 98.5 2.2E-06 4.7E-11 100.7 16.2 182 181-389 16-219 (944)
59 PF13173 AAA_14: AAA domain 98.5 4E-07 8.7E-12 84.4 7.2 119 209-349 3-127 (128)
60 cd00009 AAA The AAA+ (ATPases 98.4 1.4E-06 3.1E-11 83.7 11.1 125 184-328 1-131 (151)
61 PRK14963 DNA polymerase III su 98.4 7.3E-07 1.6E-11 101.7 10.1 194 182-387 15-214 (504)
62 KOG0532 Leucine-rich repeat (L 98.4 1.2E-08 2.5E-13 110.3 -4.4 180 585-817 90-270 (722)
63 PRK12323 DNA polymerase III su 98.4 4.5E-06 9.6E-11 94.9 15.6 196 181-389 16-224 (700)
64 COG3903 Predicted ATPase [Gene 98.4 2.9E-07 6.2E-12 97.3 5.7 290 207-516 13-313 (414)
65 COG1474 CDC6 Cdc6-related prot 98.4 1.8E-05 3.9E-10 86.4 19.5 204 183-390 19-238 (366)
66 PRK14957 DNA polymerase III su 98.4 4.4E-06 9.6E-11 95.3 15.4 184 182-392 17-223 (546)
67 PLN03025 replication factor C 98.4 4.9E-06 1.1E-10 90.7 15.2 181 181-386 13-196 (319)
68 PRK06645 DNA polymerase III su 98.4 7.5E-06 1.6E-10 93.0 16.7 193 182-387 22-226 (507)
69 PRK09112 DNA polymerase III su 98.4 1E-05 2.2E-10 88.1 17.0 198 179-391 21-241 (351)
70 PRK07471 DNA polymerase III su 98.4 1.3E-05 2.8E-10 87.8 17.8 198 180-391 18-239 (365)
71 PRK14956 DNA polymerase III su 98.4 3.7E-06 8E-11 93.2 13.6 189 181-385 18-217 (484)
72 PRK00440 rfc replication facto 98.4 7.6E-06 1.7E-10 90.1 16.1 180 181-387 17-200 (319)
73 PRK08727 hypothetical protein; 98.4 5E-06 1.1E-10 85.8 13.4 148 209-387 42-201 (233)
74 PRK13341 recombination factor 98.4 5.1E-06 1.1E-10 98.6 15.1 169 181-385 28-212 (725)
75 PRK08691 DNA polymerase III su 98.4 5.4E-06 1.2E-10 95.5 14.8 181 181-388 16-218 (709)
76 PRK07940 DNA polymerase III su 98.4 7.9E-06 1.7E-10 90.2 15.7 179 182-390 6-213 (394)
77 PRK14964 DNA polymerase III su 98.4 8E-06 1.7E-10 91.9 15.8 181 181-387 13-214 (491)
78 PRK07994 DNA polymerase III su 98.3 7.4E-06 1.6E-10 95.0 15.5 194 181-390 16-220 (647)
79 TIGR00678 holB DNA polymerase 98.3 1.3E-05 2.8E-10 80.1 15.4 90 286-385 95-186 (188)
80 PRK08084 DNA replication initi 98.3 9E-06 2E-10 84.0 14.6 155 208-393 45-212 (235)
81 PRK14962 DNA polymerase III su 98.3 1.6E-05 3.5E-10 90.0 17.6 187 181-394 14-223 (472)
82 KOG0532 Leucine-rich repeat (L 98.3 1.3E-08 2.8E-13 110.0 -6.8 121 561-693 96-216 (722)
83 TIGR02903 spore_lon_C ATP-depe 98.3 6.1E-06 1.3E-10 97.2 14.7 200 182-391 155-396 (615)
84 PRK08903 DnaA regulatory inact 98.3 7.9E-06 1.7E-10 84.6 13.7 153 207-394 41-203 (227)
85 PF14580 LRR_9: Leucine-rich r 98.3 2.7E-07 5.8E-12 88.8 2.5 87 589-680 15-103 (175)
86 TIGR02397 dnaX_nterm DNA polym 98.3 1.7E-05 3.7E-10 88.7 17.1 181 182-390 15-218 (355)
87 PRK05896 DNA polymerase III su 98.3 1.1E-05 2.3E-10 92.2 15.3 195 182-392 17-223 (605)
88 PRK14951 DNA polymerase III su 98.3 1.5E-05 3.2E-10 92.5 16.3 195 182-389 17-224 (618)
89 PRK14958 DNA polymerase III su 98.3 1.4E-05 3.1E-10 91.6 15.5 180 182-387 17-217 (509)
90 cd01128 rho_factor Transcripti 98.3 1.8E-06 3.8E-11 88.9 7.2 91 207-298 15-114 (249)
91 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.2E-11 69.3 4.1 56 594-650 2-59 (61)
92 KOG2227 Pre-initiation complex 98.2 1.8E-05 3.9E-10 84.7 14.3 214 179-394 148-376 (529)
93 KOG1259 Nischarin, modulator o 98.2 2.2E-07 4.7E-12 92.4 0.1 125 560-696 281-407 (490)
94 PRK05642 DNA replication initi 98.2 1.6E-05 3.5E-10 82.0 13.2 156 208-394 45-212 (234)
95 PRK14969 DNA polymerase III su 98.2 3E-05 6.6E-10 89.5 16.5 183 182-390 17-221 (527)
96 PRK09111 DNA polymerase III su 98.2 2.6E-05 5.6E-10 90.7 15.9 196 181-389 24-232 (598)
97 PLN03150 hypothetical protein; 98.2 2.5E-06 5.4E-11 101.4 7.5 94 594-687 419-513 (623)
98 COG4886 Leucine-rich repeat (L 98.2 1.3E-06 2.7E-11 99.4 4.7 126 558-693 111-237 (394)
99 PRK14955 DNA polymerase III su 98.2 2.4E-05 5.2E-10 87.8 14.7 199 182-390 17-229 (397)
100 PF00308 Bac_DnaA: Bacterial d 98.2 3E-05 6.5E-10 79.0 14.0 183 183-390 11-208 (219)
101 PF14516 AAA_35: AAA-like doma 98.2 0.00025 5.5E-09 77.3 21.8 199 182-397 12-246 (331)
102 PRK09087 hypothetical protein; 98.1 2.5E-05 5.3E-10 79.9 12.8 142 208-391 44-196 (226)
103 KOG1259 Nischarin, modulator o 98.1 5.2E-07 1.1E-11 89.8 0.3 43 632-675 206-248 (490)
104 TIGR01242 26Sp45 26S proteasom 98.1 1.7E-05 3.7E-10 88.3 12.4 181 179-384 120-328 (364)
105 PRK14959 DNA polymerase III su 98.1 5E-05 1.1E-09 87.4 16.2 197 182-394 17-225 (624)
106 PRK14952 DNA polymerase III su 98.1 5.6E-05 1.2E-09 87.4 16.7 197 182-394 14-224 (584)
107 PLN03150 hypothetical protein; 98.1 3.3E-06 7.2E-11 100.4 6.6 109 565-679 420-530 (623)
108 PRK14087 dnaA chromosomal repl 98.1 4.8E-05 1E-09 86.2 15.1 169 208-392 141-321 (450)
109 PRK07133 DNA polymerase III su 98.1 8E-05 1.7E-09 87.1 17.0 192 182-391 19-221 (725)
110 KOG2120 SCF ubiquitin ligase, 98.1 2.9E-08 6.3E-13 98.6 -9.4 184 742-968 185-376 (419)
111 PRK09376 rho transcription ter 98.1 8.5E-06 1.8E-10 87.1 8.3 101 192-298 158-267 (416)
112 PRK14970 DNA polymerase III su 98.1 8.5E-05 1.8E-09 83.1 16.9 184 182-391 18-211 (367)
113 PF13855 LRR_8: Leucine rich r 98.1 4.4E-06 9.5E-11 65.7 4.6 58 617-675 1-60 (61)
114 KOG2120 SCF ubiquitin ligase, 98.1 9.7E-08 2.1E-12 95.0 -6.2 173 723-922 191-373 (419)
115 KOG0989 Replication factor C, 98.1 2.4E-05 5.1E-10 79.2 10.2 183 181-384 36-224 (346)
116 PRK14950 DNA polymerase III su 98.1 9.1E-05 2E-09 87.3 16.9 193 182-390 17-221 (585)
117 PRK15386 type III secretion pr 98.1 2.2E-05 4.9E-10 85.0 10.7 137 777-943 47-187 (426)
118 PRK07764 DNA polymerase III su 98.0 7.9E-05 1.7E-09 89.8 16.5 176 182-387 16-218 (824)
119 KOG1909 Ran GTPase-activating 98.0 6.3E-07 1.4E-11 91.8 -1.1 256 586-870 23-308 (382)
120 PRK14953 DNA polymerase III su 98.0 0.00014 3.1E-09 82.8 17.6 182 182-390 17-220 (486)
121 PF05621 TniB: Bacterial TniB 98.0 0.00015 3.2E-09 75.1 15.9 198 188-389 44-260 (302)
122 PRK15386 type III secretion pr 98.0 3E-05 6.5E-10 84.0 11.3 57 806-873 51-107 (426)
123 COG2255 RuvB Holliday junction 98.0 0.00024 5.1E-09 71.4 16.4 266 181-498 26-313 (332)
124 PRK14954 DNA polymerase III su 98.0 9.3E-05 2E-09 86.3 15.8 200 182-390 17-229 (620)
125 TIGR02881 spore_V_K stage V sp 98.0 8.5E-05 1.8E-09 78.5 14.2 161 182-358 7-192 (261)
126 PHA02544 44 clamp loader, smal 98.0 0.0001 2.2E-09 80.8 15.3 147 181-355 21-171 (316)
127 PRK06620 hypothetical protein; 98.0 0.00011 2.5E-09 74.3 13.9 138 209-390 45-189 (214)
128 PRK14948 DNA polymerase III su 98.0 0.00015 3.4E-09 85.0 16.8 195 182-390 17-222 (620)
129 PRK06305 DNA polymerase III su 98.0 0.00015 3.3E-09 82.2 16.0 182 182-391 18-224 (451)
130 PRK08451 DNA polymerase III su 97.9 0.00021 4.6E-09 81.3 16.5 179 182-390 15-218 (535)
131 TIGR03345 VI_ClpV1 type VI sec 97.9 8.4E-05 1.8E-09 90.8 14.0 152 181-356 187-362 (852)
132 CHL00181 cbbX CbbX; Provisiona 97.9 0.00035 7.6E-09 74.2 17.0 135 208-358 59-210 (287)
133 TIGR00767 rho transcription te 97.9 2.3E-05 4.9E-10 84.4 7.6 91 207-298 167-266 (415)
134 PF05673 DUF815: Protein of un 97.9 0.00032 6.9E-09 70.2 15.0 126 177-329 23-153 (249)
135 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 57.8 3.2 33 618-650 2-34 (44)
136 PRK03992 proteasome-activating 97.9 7E-05 1.5E-09 83.6 11.4 179 180-383 130-336 (389)
137 PRK11331 5-methylcytosine-spec 97.9 7.5E-05 1.6E-09 82.0 11.2 120 181-312 175-298 (459)
138 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 57.4 3.6 41 593-634 1-41 (44)
139 PRK14971 DNA polymerase III su 97.9 0.00031 6.7E-09 82.6 17.0 175 182-387 18-219 (614)
140 TIGR02880 cbbX_cfxQ probable R 97.9 0.00028 6E-09 75.1 14.8 134 209-358 59-209 (284)
141 TIGR02639 ClpA ATP-dependent C 97.9 0.00012 2.5E-09 89.1 13.4 155 182-357 183-358 (731)
142 PRK06647 DNA polymerase III su 97.9 0.00045 9.7E-09 80.2 17.4 191 182-388 17-218 (563)
143 PRK07399 DNA polymerase III su 97.8 0.00052 1.1E-08 73.8 16.6 195 182-390 5-221 (314)
144 PRK05707 DNA polymerase III su 97.8 0.00031 6.8E-09 75.9 14.9 97 286-390 105-203 (328)
145 PRK14965 DNA polymerase III su 97.8 0.00026 5.7E-09 83.0 15.2 193 182-390 17-221 (576)
146 CHL00095 clpC Clp protease ATP 97.8 0.00011 2.4E-09 90.4 12.7 153 182-355 180-352 (821)
147 TIGR00362 DnaA chromosomal rep 97.8 0.0004 8.6E-09 78.7 15.9 159 208-388 136-308 (405)
148 PRK05563 DNA polymerase III su 97.8 0.00071 1.5E-08 79.0 17.8 191 181-387 16-217 (559)
149 PRK12422 chromosomal replicati 97.8 0.00073 1.6E-08 76.4 17.3 155 208-384 141-307 (445)
150 COG3267 ExeA Type II secretory 97.8 0.001 2.2E-08 66.3 15.9 182 207-393 50-248 (269)
151 KOG1909 Ran GTPase-activating 97.8 3.1E-06 6.7E-11 86.9 -1.5 257 611-903 24-310 (382)
152 COG0593 DnaA ATPase involved i 97.8 0.00024 5.2E-09 77.3 12.7 158 180-359 87-259 (408)
153 KOG0531 Protein phosphatase 1, 97.8 6E-06 1.3E-10 93.9 0.4 102 587-693 89-191 (414)
154 PRK00149 dnaA chromosomal repl 97.8 0.00043 9.3E-09 79.4 15.3 160 207-388 147-320 (450)
155 PRK14088 dnaA chromosomal repl 97.8 0.00059 1.3E-08 77.4 16.0 160 208-388 130-303 (440)
156 PRK14086 dnaA chromosomal repl 97.7 0.00062 1.3E-08 78.2 15.2 158 209-388 315-486 (617)
157 KOG2543 Origin recognition com 97.7 0.0012 2.6E-08 69.3 15.6 169 180-356 5-192 (438)
158 KOG0531 Protein phosphatase 1, 97.7 4.6E-06 1E-10 94.8 -2.6 99 591-694 70-168 (414)
159 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00047 1E-08 85.2 14.0 151 182-356 174-348 (852)
160 PF00004 AAA: ATPase family as 97.6 8.3E-05 1.8E-09 69.6 5.8 21 211-231 1-21 (132)
161 PRK11034 clpA ATP-dependent Cl 97.6 0.00037 8E-09 83.5 12.5 154 182-356 187-361 (758)
162 TIGR00602 rad24 checkpoint pro 97.6 0.00044 9.6E-09 80.6 11.7 50 180-230 83-132 (637)
163 TIGR00763 lon ATP-dependent pr 97.6 0.0019 4.2E-08 79.1 17.9 164 181-356 320-504 (775)
164 smart00382 AAA ATPases associa 97.6 0.00033 7.2E-09 66.5 9.0 88 209-300 3-91 (148)
165 PRK10536 hypothetical protein; 97.6 0.0015 3.2E-08 66.4 13.7 136 182-329 56-215 (262)
166 KOG2004 Mitochondrial ATP-depe 97.6 0.0025 5.5E-08 72.1 16.6 107 180-298 410-516 (906)
167 PRK08116 hypothetical protein; 97.5 0.00029 6.3E-09 74.0 9.0 103 209-326 115-220 (268)
168 PRK10865 protein disaggregatio 97.5 0.00094 2E-08 82.2 14.4 44 181-230 178-221 (857)
169 PTZ00361 26 proteosome regulat 97.5 0.00027 5.9E-09 78.9 8.7 157 181-357 183-367 (438)
170 PRK08769 DNA polymerase III su 97.5 0.003 6.5E-08 67.7 16.3 175 188-391 11-209 (319)
171 KOG2982 Uncharacterized conser 97.5 3.2E-05 7E-10 77.5 1.2 88 587-675 64-157 (418)
172 KOG4579 Leucine-rich repeat (L 97.5 1.7E-05 3.6E-10 70.1 -0.9 96 585-683 45-141 (177)
173 CHL00176 ftsH cell division pr 97.5 0.0015 3.3E-08 76.9 14.5 177 181-382 183-386 (638)
174 PRK08058 DNA polymerase III su 97.5 0.0021 4.6E-08 70.1 14.8 162 183-356 7-181 (329)
175 COG0466 Lon ATP-dependent Lon 97.5 0.0011 2.3E-08 75.5 12.4 166 180-357 322-508 (782)
176 TIGR03689 pup_AAA proteasome A 97.5 0.0015 3.2E-08 74.2 13.8 165 181-357 182-378 (512)
177 PRK06090 DNA polymerase III su 97.4 0.004 8.6E-08 66.6 16.1 167 188-390 10-201 (319)
178 PRK06871 DNA polymerase III su 97.4 0.0044 9.6E-08 66.5 16.3 177 188-387 9-200 (325)
179 COG1222 RPT1 ATP-dependent 26S 97.4 0.0013 2.8E-08 68.5 11.6 186 182-394 152-371 (406)
180 PTZ00454 26S protease regulato 97.4 0.0012 2.6E-08 73.3 12.0 179 181-384 145-351 (398)
181 PF13177 DNA_pol3_delta2: DNA 97.4 0.0017 3.7E-08 62.7 11.3 137 185-345 1-162 (162)
182 KOG1947 Leucine rich repeat pr 97.4 1.2E-05 2.7E-10 94.4 -4.6 118 738-873 184-308 (482)
183 KOG4579 Leucine-rich repeat (L 97.4 1.1E-05 2.4E-10 71.2 -3.7 99 593-694 27-129 (177)
184 PRK10787 DNA-binding ATP-depen 97.3 0.0014 3.1E-08 79.3 12.5 166 180-357 321-506 (784)
185 KOG1947 Leucine rich repeat pr 97.3 2E-05 4.4E-10 92.6 -3.2 113 781-903 187-308 (482)
186 KOG0991 Replication factor C, 97.3 0.0023 4.9E-08 62.2 11.1 44 181-230 27-70 (333)
187 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.4E-09 87.0 2.7 132 537-675 121-261 (699)
188 COG1373 Predicted ATPase (AAA+ 97.3 0.0021 4.5E-08 71.9 12.5 147 210-389 39-191 (398)
189 TIGR01241 FtsH_fam ATP-depende 97.3 0.0029 6.2E-08 73.6 14.0 185 181-390 55-267 (495)
190 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0032 6.9E-08 66.4 13.1 56 188-256 9-64 (262)
191 PRK12377 putative replication 97.3 0.0005 1.1E-08 70.8 6.8 101 209-326 102-205 (248)
192 KOG1859 Leucine-rich repeat pr 97.3 1.2E-05 2.5E-10 90.1 -5.5 81 590-675 184-265 (1096)
193 KOG2982 Uncharacterized conser 97.3 7.8E-05 1.7E-09 74.8 0.7 82 592-675 44-132 (418)
194 PRK08181 transposase; Validate 97.3 0.001 2.3E-08 69.4 8.9 101 209-327 107-209 (269)
195 PF10443 RNA12: RNA12 protein; 97.3 0.0092 2E-07 64.9 16.1 199 186-400 1-288 (431)
196 PRK07993 DNA polymerase III su 97.2 0.0096 2.1E-07 64.7 16.3 178 188-388 9-202 (334)
197 COG2812 DnaX DNA polymerase II 97.2 0.003 6.4E-08 71.2 12.2 186 182-384 17-214 (515)
198 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0015 3.2E-08 80.1 10.7 136 181-326 566-718 (852)
199 COG2607 Predicted ATPase (AAA+ 97.2 0.0025 5.3E-08 62.6 9.7 121 177-326 56-182 (287)
200 PRK07952 DNA replication prote 97.1 0.0047 1E-07 63.5 12.0 103 208-326 99-204 (244)
201 KOG3665 ZYG-1-like serine/thre 97.1 0.0002 4.3E-09 84.9 2.3 153 859-1018 121-285 (699)
202 COG5238 RNA1 Ran GTPase-activa 97.1 0.00017 3.6E-09 71.5 1.2 93 586-680 23-135 (388)
203 KOG1514 Origin recognition com 97.1 0.025 5.4E-07 64.5 18.1 204 182-393 397-624 (767)
204 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0027 5.9E-08 78.6 11.9 136 181-326 565-717 (852)
205 PRK06964 DNA polymerase III su 97.1 0.011 2.4E-07 64.0 14.9 94 286-391 131-226 (342)
206 PRK08939 primosomal protein Dn 97.1 0.0019 4.2E-08 69.1 9.1 122 185-326 135-260 (306)
207 PF04665 Pox_A32: Poxvirus A32 97.1 0.00089 1.9E-08 67.8 6.1 36 209-246 14-49 (241)
208 PF01695 IstB_IS21: IstB-like 97.1 0.00091 2E-08 65.5 5.9 101 208-326 47-149 (178)
209 PRK06526 transposase; Provisio 97.0 0.0009 1.9E-08 69.6 5.6 23 209-231 99-121 (254)
210 COG1223 Predicted ATPase (AAA+ 97.0 0.0079 1.7E-07 59.7 11.5 177 181-383 121-318 (368)
211 PRK10865 protein disaggregatio 97.0 0.0036 7.8E-08 77.1 11.5 125 181-313 568-696 (857)
212 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0081 1.8E-07 66.9 12.8 98 181-298 190-293 (802)
213 PF02562 PhoH: PhoH-like prote 97.0 0.0026 5.7E-08 62.9 8.4 129 186-329 5-158 (205)
214 PRK13531 regulatory ATPase Rav 97.0 0.0032 6.9E-08 70.1 9.8 41 182-230 21-61 (498)
215 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00072 1.6E-08 72.4 4.6 50 182-231 52-101 (361)
216 PRK09183 transposase/IS protei 97.0 0.002 4.3E-08 67.5 7.7 22 209-230 103-124 (259)
217 PRK06921 hypothetical protein; 97.0 0.0023 5E-08 67.2 8.2 37 208-246 117-154 (266)
218 COG0470 HolB ATPase involved i 97.0 0.0047 1E-07 68.2 11.1 144 182-345 2-169 (325)
219 TIGR02639 ClpA ATP-dependent C 97.0 0.0042 9.1E-08 75.7 11.5 120 181-313 454-579 (731)
220 COG0542 clpA ATP-binding subun 96.9 0.0025 5.4E-08 74.8 8.8 123 181-314 491-620 (786)
221 KOG0734 AAA+-type ATPase conta 96.9 0.0037 8E-08 68.3 9.2 51 182-232 305-361 (752)
222 CHL00095 clpC Clp protease ATP 96.9 0.0043 9.4E-08 76.6 11.1 136 181-326 509-661 (821)
223 PRK08118 topology modulation p 96.9 0.00046 1E-08 67.0 2.2 34 210-243 3-37 (167)
224 PRK04296 thymidine kinase; Pro 96.9 0.0021 4.6E-08 64.0 6.8 114 209-329 3-118 (190)
225 TIGR02237 recomb_radB DNA repa 96.9 0.0039 8.5E-08 63.6 8.9 48 206-256 10-57 (209)
226 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0063 1.4E-07 69.3 11.2 158 182-359 229-407 (489)
227 KOG0741 AAA+-type ATPase [Post 96.9 0.034 7.4E-07 61.0 15.8 151 206-380 536-704 (744)
228 PF00910 RNA_helicase: RNA hel 96.9 0.0024 5.1E-08 56.8 6.2 21 211-231 1-21 (107)
229 PRK09361 radB DNA repair and r 96.9 0.0053 1.1E-07 63.4 9.7 47 206-255 21-67 (225)
230 TIGR01243 CDC48 AAA family ATP 96.9 0.0059 1.3E-07 74.8 11.6 180 181-385 178-382 (733)
231 PRK12608 transcription termina 96.8 0.0055 1.2E-07 66.1 9.8 100 190-296 120-229 (380)
232 KOG0733 Nuclear AAA ATPase (VC 96.8 0.013 2.7E-07 65.5 12.2 155 208-384 545-718 (802)
233 PRK05541 adenylylsulfate kinas 96.7 0.0036 7.7E-08 61.8 6.9 37 207-245 6-42 (176)
234 PRK06835 DNA replication prote 96.7 0.0016 3.5E-08 70.2 4.7 102 209-326 184-288 (329)
235 KOG2228 Origin recognition com 96.7 0.013 2.8E-07 60.7 10.7 171 182-357 25-219 (408)
236 PF00158 Sigma54_activat: Sigm 96.7 0.0047 1E-07 59.8 7.4 131 183-326 1-143 (168)
237 PRK08699 DNA polymerase III su 96.7 0.014 3.1E-07 63.1 11.8 71 286-356 112-184 (325)
238 PF00448 SRP54: SRP54-type pro 96.7 0.0091 2E-07 59.5 9.5 88 208-297 1-93 (196)
239 PF07728 AAA_5: AAA domain (dy 96.7 0.00064 1.4E-08 64.2 1.2 88 211-311 2-89 (139)
240 TIGR01243 CDC48 AAA family ATP 96.7 0.021 4.5E-07 70.0 14.6 179 181-384 453-657 (733)
241 cd01394 radB RadB. The archaea 96.7 0.0086 1.9E-07 61.5 9.7 44 206-251 17-60 (218)
242 PF14532 Sigma54_activ_2: Sigm 96.7 0.0018 3.9E-08 60.9 4.0 108 184-327 1-110 (138)
243 PF07693 KAP_NTPase: KAP famil 96.6 0.049 1.1E-06 60.0 15.8 42 187-231 2-43 (325)
244 PRK04132 replication factor C 96.6 0.032 6.8E-07 67.4 14.9 153 216-388 574-729 (846)
245 KOG1859 Leucine-rich repeat pr 96.6 0.00023 5E-09 80.1 -2.7 106 559-675 183-290 (1096)
246 TIGR02902 spore_lonB ATP-depen 96.6 0.0072 1.6E-07 70.4 9.3 43 182-230 66-108 (531)
247 COG5238 RNA1 Ran GTPase-activa 96.6 0.00018 3.8E-09 71.4 -3.3 258 611-900 24-313 (388)
248 PRK11034 clpA ATP-dependent Cl 96.6 0.0092 2E-07 71.8 10.3 120 182-312 459-582 (758)
249 cd01393 recA_like RecA is a b 96.6 0.011 2.5E-07 61.0 9.8 89 206-297 17-124 (226)
250 PRK11889 flhF flagellar biosyn 96.5 0.028 6.1E-07 60.9 12.3 89 207-298 240-331 (436)
251 KOG0730 AAA+-type ATPase [Post 96.5 0.022 4.8E-07 64.5 12.0 54 183-238 436-496 (693)
252 PHA00729 NTP-binding motif con 96.5 0.012 2.6E-07 59.0 9.0 24 207-230 16-39 (226)
253 cd00983 recA RecA is a bacter 96.5 0.007 1.5E-07 64.6 7.7 84 206-296 53-142 (325)
254 PRK07261 topology modulation p 96.5 0.0062 1.3E-07 59.5 6.7 66 210-298 2-68 (171)
255 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.011 2.4E-07 61.6 8.9 90 206-296 17-124 (235)
256 KOG1644 U2-associated snRNP A' 96.4 0.0049 1.1E-07 59.0 5.4 62 588-650 59-123 (233)
257 KOG0731 AAA+-type ATPase conta 96.4 0.064 1.4E-06 62.9 15.2 183 181-387 311-521 (774)
258 COG1484 DnaC DNA replication p 96.4 0.0092 2E-07 62.2 7.8 76 207-299 104-179 (254)
259 PF08423 Rad51: Rad51; InterP 96.4 0.0098 2.1E-07 62.1 7.9 89 207-296 37-142 (256)
260 PF13207 AAA_17: AAA domain; P 96.4 0.0025 5.4E-08 58.4 3.1 21 210-230 1-21 (121)
261 TIGR03499 FlhF flagellar biosy 96.4 0.013 2.8E-07 62.4 8.7 88 207-296 193-281 (282)
262 COG1136 SalX ABC-type antimicr 96.4 0.027 5.8E-07 56.5 10.3 60 273-334 146-210 (226)
263 TIGR02012 tigrfam_recA protein 96.4 0.011 2.3E-07 63.2 8.0 84 206-296 53-142 (321)
264 TIGR01817 nifA Nif-specific re 96.3 0.025 5.4E-07 66.7 11.9 135 180-326 195-340 (534)
265 KOG0728 26S proteasome regulat 96.3 0.09 2E-06 51.9 13.3 153 183-356 148-330 (404)
266 KOG1969 DNA replication checkp 96.3 0.01 2.3E-07 67.6 7.9 81 206-306 324-406 (877)
267 TIGR02238 recomb_DMC1 meiotic 96.3 0.014 3E-07 62.8 8.6 90 206-296 94-200 (313)
268 KOG0744 AAA+-type ATPase [Post 96.3 0.01 2.2E-07 60.9 7.1 80 207-296 176-259 (423)
269 KOG2035 Replication factor C, 96.3 0.011 2.4E-07 59.4 7.0 180 183-384 15-222 (351)
270 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.015 3.4E-07 55.0 7.7 117 209-328 3-139 (159)
271 cd01131 PilT Pilus retraction 96.2 0.01 2.2E-07 59.6 6.8 109 209-329 2-111 (198)
272 KOG1644 U2-associated snRNP A' 96.2 0.0058 1.3E-07 58.5 4.6 100 592-695 41-147 (233)
273 PRK06696 uridine kinase; Valid 96.2 0.006 1.3E-07 62.7 5.2 43 185-230 2-44 (223)
274 COG1875 NYN ribonuclease and A 96.2 0.019 4E-07 60.3 8.5 133 185-329 228-390 (436)
275 PRK09354 recA recombinase A; P 96.2 0.016 3.4E-07 62.5 8.3 84 206-296 58-147 (349)
276 PRK15455 PrkA family serine pr 96.2 0.0036 7.8E-08 70.6 3.5 49 182-230 77-125 (644)
277 cd03247 ABCC_cytochrome_bd The 96.2 0.018 4E-07 56.8 8.2 117 209-331 29-161 (178)
278 PF13604 AAA_30: AAA domain; P 96.2 0.014 3E-07 58.4 7.4 109 209-329 19-133 (196)
279 PLN00020 ribulose bisphosphate 96.2 0.009 1.9E-07 63.6 6.1 26 206-231 146-171 (413)
280 COG4608 AppF ABC-type oligopep 96.2 0.019 4.2E-07 58.4 8.2 125 207-334 38-177 (268)
281 COG2884 FtsE Predicted ATPase 96.1 0.046 1E-06 52.1 9.8 125 207-334 27-204 (223)
282 KOG2123 Uncharacterized conser 96.1 0.00032 6.8E-09 69.9 -4.6 102 591-696 17-125 (388)
283 cd01120 RecA-like_NTPases RecA 96.1 0.027 5.8E-07 54.7 9.0 40 210-251 1-40 (165)
284 COG0542 clpA ATP-binding subun 96.1 0.015 3.1E-07 68.6 8.0 152 182-356 171-345 (786)
285 PRK07132 DNA polymerase III su 96.1 0.24 5.1E-06 52.8 16.4 157 208-390 18-185 (299)
286 PF03215 Rad17: Rad17 cell cyc 96.1 0.03 6.5E-07 64.3 10.3 58 183-245 21-78 (519)
287 cd01133 F1-ATPase_beta F1 ATP 96.1 0.028 6.1E-07 58.3 9.1 88 207-296 68-172 (274)
288 KOG0652 26S proteasome regulat 96.1 0.076 1.7E-06 52.7 11.4 56 181-238 171-233 (424)
289 COG0468 RecA RecA/RadA recombi 96.1 0.031 6.6E-07 58.3 9.3 88 206-296 58-150 (279)
290 PRK14722 flhF flagellar biosyn 96.0 0.021 4.5E-07 62.4 8.4 87 208-298 137-226 (374)
291 cd03228 ABCC_MRP_Like The MRP 96.0 0.034 7.5E-07 54.4 9.1 120 208-331 28-159 (171)
292 cd03214 ABC_Iron-Siderophores_ 96.0 0.046 1E-06 54.0 10.1 120 208-330 25-161 (180)
293 PRK12727 flagellar biosynthesi 96.0 0.029 6.4E-07 63.3 9.3 89 207-297 349-438 (559)
294 PTZ00494 tuzin-like protein; P 96.0 0.44 9.6E-06 51.9 17.4 167 178-356 368-543 (664)
295 COG0464 SpoVK ATPases of the A 96.0 0.056 1.2E-06 63.2 12.3 133 206-358 274-424 (494)
296 KOG2739 Leucine-rich acidic nu 95.9 0.0032 6.9E-08 63.0 1.5 61 590-650 62-126 (260)
297 PRK11608 pspF phage shock prot 95.9 0.024 5.2E-07 61.8 8.5 134 182-327 7-151 (326)
298 KOG0729 26S proteasome regulat 95.9 0.042 9E-07 54.7 9.1 55 182-238 178-239 (435)
299 PHA02244 ATPase-like protein 95.9 0.036 7.8E-07 59.7 9.4 21 210-230 121-141 (383)
300 PRK14974 cell division protein 95.9 0.053 1.2E-06 58.6 10.8 88 207-298 139-233 (336)
301 PRK05703 flhF flagellar biosyn 95.9 0.048 1E-06 61.4 10.9 87 208-296 221-308 (424)
302 TIGR02239 recomb_RAD51 DNA rep 95.9 0.029 6.2E-07 60.6 8.8 58 206-264 94-155 (316)
303 PRK12724 flagellar biosynthesi 95.9 0.035 7.5E-07 61.1 9.2 24 207-230 222-245 (432)
304 PF01583 APS_kinase: Adenylyls 95.9 0.0052 1.1E-07 57.8 2.5 36 208-245 2-37 (156)
305 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.057 1.2E-06 55.1 10.0 120 209-330 31-202 (254)
306 PRK12726 flagellar biosynthesi 95.9 0.082 1.8E-06 57.2 11.7 90 207-298 205-296 (407)
307 PF00560 LRR_1: Leucine Rich R 95.8 0.0037 8E-08 37.0 0.9 18 619-636 2-19 (22)
308 PRK15429 formate hydrogenlyase 95.8 0.038 8.2E-07 67.3 10.3 134 182-327 377-521 (686)
309 KOG2739 Leucine-rich acidic nu 95.8 0.0044 9.6E-08 62.0 1.8 104 591-698 41-153 (260)
310 PRK00771 signal recognition pa 95.8 0.052 1.1E-06 60.9 10.4 87 207-296 94-184 (437)
311 cd03216 ABC_Carb_Monos_I This 95.8 0.03 6.4E-07 54.3 7.4 114 209-329 27-144 (163)
312 PRK10867 signal recognition pa 95.8 0.048 1E-06 61.0 10.0 24 207-230 99-122 (433)
313 TIGR02974 phageshock_pspF psp 95.7 0.025 5.3E-07 61.7 7.5 132 183-326 1-143 (329)
314 cd03115 SRP The signal recogni 95.7 0.075 1.6E-06 52.2 10.3 86 210-297 2-92 (173)
315 PRK06067 flagellar accessory p 95.7 0.038 8.2E-07 57.4 8.5 87 206-297 23-130 (234)
316 PF10236 DAP3: Mitochondrial r 95.7 0.36 7.8E-06 52.1 16.1 49 338-387 258-306 (309)
317 PRK08233 hypothetical protein; 95.7 0.03 6.6E-07 55.6 7.3 23 208-230 3-25 (182)
318 cd03223 ABCD_peroxisomal_ALDP 95.7 0.09 2E-06 51.1 10.4 115 208-330 27-151 (166)
319 cd03238 ABC_UvrA The excision 95.7 0.049 1.1E-06 53.2 8.4 113 208-330 21-152 (176)
320 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.075 1.6E-06 55.2 10.4 48 207-258 20-67 (237)
321 PF00485 PRK: Phosphoribulokin 95.6 0.045 9.8E-07 54.9 8.5 79 210-291 1-87 (194)
322 COG1618 Predicted nucleotide k 95.6 0.011 2.4E-07 54.5 3.5 22 209-230 6-27 (179)
323 TIGR01650 PD_CobS cobaltochela 95.6 0.27 5.9E-06 52.5 14.4 61 182-255 46-106 (327)
324 PLN03187 meiotic recombination 95.6 0.057 1.2E-06 58.6 9.5 90 206-296 124-230 (344)
325 KOG1051 Chaperone HSP104 and r 95.6 0.065 1.4E-06 64.3 10.7 120 182-312 563-685 (898)
326 PLN03186 DNA repair protein RA 95.6 0.06 1.3E-06 58.5 9.7 59 206-265 121-183 (342)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.074 1.6E-06 50.2 9.3 103 209-330 27-130 (144)
328 PRK07667 uridine kinase; Provi 95.6 0.027 5.8E-07 56.4 6.5 37 190-230 3-39 (193)
329 PF07724 AAA_2: AAA domain (Cd 95.6 0.0086 1.9E-07 58.2 2.9 42 208-251 3-45 (171)
330 TIGR00064 ftsY signal recognit 95.5 0.073 1.6E-06 56.1 9.9 89 206-297 70-164 (272)
331 TIGR02236 recomb_radA DNA repa 95.5 0.049 1.1E-06 59.3 8.9 57 207-264 94-154 (310)
332 cd03230 ABC_DR_subfamily_A Thi 95.5 0.042 9E-07 54.0 7.5 118 208-331 26-159 (173)
333 COG0572 Udk Uridine kinase [Nu 95.5 0.031 6.7E-07 55.3 6.3 78 206-288 6-85 (218)
334 PRK12723 flagellar biosynthesi 95.5 0.059 1.3E-06 59.5 9.2 89 207-298 173-265 (388)
335 KOG0735 AAA+-type ATPase [Post 95.5 0.027 5.8E-07 64.1 6.4 72 207-296 430-503 (952)
336 COG4618 ArpD ABC-type protease 95.4 0.1 2.2E-06 57.6 10.5 22 209-230 363-384 (580)
337 cd01125 repA Hexameric Replica 95.4 0.084 1.8E-06 55.0 9.8 142 210-351 3-198 (239)
338 PRK13695 putative NTPase; Prov 95.4 0.014 3.1E-07 57.3 3.7 22 210-231 2-23 (174)
339 COG1102 Cmk Cytidylate kinase 95.3 0.033 7.1E-07 51.5 5.5 44 210-266 2-45 (179)
340 PRK05022 anaerobic nitric oxid 95.3 0.063 1.4E-06 62.7 9.5 135 181-327 187-332 (509)
341 cd03246 ABCC_Protease_Secretio 95.3 0.054 1.2E-06 53.2 7.7 119 209-331 29-160 (173)
342 PRK05439 pantothenate kinase; 95.3 0.091 2E-06 56.0 9.7 80 205-288 83-166 (311)
343 KOG3864 Uncharacterized conser 95.3 0.0037 8.1E-08 59.9 -0.6 83 914-996 103-192 (221)
344 PF00154 RecA: recA bacterial 95.3 0.047 1E-06 58.2 7.4 83 207-296 52-140 (322)
345 PRK09270 nucleoside triphospha 95.3 0.087 1.9E-06 54.4 9.4 25 206-230 31-55 (229)
346 cd01122 GP4d_helicase GP4d_hel 95.3 0.15 3.2E-06 54.4 11.4 53 207-262 29-81 (271)
347 PRK04301 radA DNA repair and r 95.3 0.069 1.5E-06 58.2 8.9 58 206-264 100-161 (317)
348 cd03222 ABC_RNaseL_inhibitor T 95.3 0.086 1.9E-06 51.5 8.6 103 208-331 25-136 (177)
349 cd01121 Sms Sms (bacterial rad 95.2 0.086 1.9E-06 58.1 9.6 82 207-296 81-167 (372)
350 PRK00889 adenylylsulfate kinas 95.2 0.053 1.1E-06 53.4 7.2 23 208-230 4-26 (175)
351 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.024 5.2E-07 60.3 4.9 51 180-230 60-110 (358)
352 PTZ00035 Rad51 protein; Provis 95.2 0.13 2.8E-06 56.1 10.7 90 206-296 116-222 (337)
353 TIGR00959 ffh signal recogniti 95.2 0.064 1.4E-06 60.0 8.5 24 207-230 98-121 (428)
354 COG1066 Sms Predicted ATP-depe 95.2 0.053 1.1E-06 58.2 7.3 82 208-298 93-179 (456)
355 PTZ00088 adenylate kinase 1; P 95.2 0.021 4.6E-07 58.3 4.4 20 211-230 9-28 (229)
356 PTZ00301 uridine kinase; Provi 95.2 0.026 5.7E-07 56.7 4.9 23 208-230 3-25 (210)
357 PRK10733 hflB ATP-dependent me 95.1 0.21 4.5E-06 59.9 13.1 157 182-358 153-336 (644)
358 cd02025 PanK Pantothenate kina 95.1 0.074 1.6E-06 54.3 8.1 21 210-230 1-21 (220)
359 TIGR00554 panK_bact pantothena 95.1 0.1 2.2E-06 55.2 9.3 25 206-230 60-84 (290)
360 TIGR00708 cobA cob(I)alamin ad 95.1 0.13 2.9E-06 49.4 9.1 118 208-327 5-140 (173)
361 KOG0727 26S proteasome regulat 95.1 0.53 1.2E-05 46.8 13.2 50 182-231 156-212 (408)
362 cd03229 ABC_Class3 This class 95.1 0.06 1.3E-06 53.1 7.1 23 208-230 26-48 (178)
363 PF13238 AAA_18: AAA domain; P 95.0 0.018 3.9E-07 53.3 3.1 20 211-230 1-20 (129)
364 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.029 6.3E-07 56.9 4.9 23 208-230 29-51 (213)
365 TIGR02858 spore_III_AA stage I 95.0 0.11 2.3E-06 54.5 9.2 114 207-330 110-232 (270)
366 cd02027 APSK Adenosine 5'-phos 95.0 0.06 1.3E-06 51.2 6.7 21 210-230 1-21 (149)
367 PF00006 ATP-synt_ab: ATP synt 95.0 0.074 1.6E-06 53.5 7.6 85 208-296 15-114 (215)
368 cd02019 NK Nucleoside/nucleoti 95.0 0.016 3.5E-07 46.5 2.3 21 210-230 1-21 (69)
369 KOG0736 Peroxisome assembly fa 94.9 0.41 8.8E-06 55.6 13.7 97 182-298 673-775 (953)
370 KOG3864 Uncharacterized conser 94.9 0.0033 7.2E-08 60.2 -2.2 59 910-968 123-189 (221)
371 KOG0735 AAA+-type ATPase [Post 94.9 0.6 1.3E-05 53.7 14.8 155 183-357 669-848 (952)
372 TIGR00390 hslU ATP-dependent p 94.8 0.067 1.5E-06 58.6 7.2 50 181-230 12-69 (441)
373 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.098 2.1E-06 55.0 8.3 42 207-250 35-76 (259)
374 COG4181 Predicted ABC-type tra 94.8 0.42 9.1E-06 44.8 11.1 126 209-335 37-215 (228)
375 PF13671 AAA_33: AAA domain; P 94.8 0.024 5.2E-07 53.7 3.4 21 210-230 1-21 (143)
376 PRK05973 replicative DNA helic 94.8 0.15 3.1E-06 52.2 9.1 41 207-249 63-103 (237)
377 PRK04328 hypothetical protein; 94.8 0.096 2.1E-06 54.7 8.1 42 207-250 22-63 (249)
378 PF03969 AFG1_ATPase: AFG1-lik 94.8 0.038 8.3E-07 60.5 5.2 105 206-329 60-169 (362)
379 PRK08972 fliI flagellum-specif 94.8 0.13 2.7E-06 57.2 9.1 86 207-296 161-261 (444)
380 PRK13948 shikimate kinase; Pro 94.7 0.19 4.2E-06 49.2 9.5 24 207-230 9-32 (182)
381 PRK05480 uridine/cytidine kina 94.7 0.027 5.8E-07 57.4 3.7 25 206-230 4-28 (209)
382 COG4240 Predicted kinase [Gene 94.7 0.18 3.9E-06 49.4 8.8 83 206-289 48-135 (300)
383 PF06745 KaiC: KaiC; InterPro 94.7 0.054 1.2E-06 55.9 6.0 85 207-296 18-124 (226)
384 cd03282 ABC_MSH4_euk MutS4 hom 94.7 0.044 9.6E-07 55.1 5.1 120 208-334 29-158 (204)
385 PF08433 KTI12: Chromatin asso 94.6 0.095 2.1E-06 55.0 7.5 22 209-230 2-23 (270)
386 PRK13538 cytochrome c biogenes 94.6 0.24 5.2E-06 50.1 10.3 24 208-231 27-50 (204)
387 COG0563 Adk Adenylate kinase a 94.6 0.057 1.2E-06 52.7 5.4 22 210-231 2-23 (178)
388 TIGR00235 udk uridine kinase. 94.6 0.03 6.6E-07 56.8 3.6 25 206-230 4-28 (207)
389 PF13481 AAA_25: AAA domain; P 94.6 0.17 3.7E-06 50.7 9.1 42 209-250 33-82 (193)
390 PRK10463 hydrogenase nickel in 94.6 0.14 3.1E-06 53.6 8.6 86 206-297 102-194 (290)
391 PF07726 AAA_3: ATPase family 94.6 0.016 3.5E-07 51.9 1.4 27 211-239 2-28 (131)
392 KOG1532 GTPase XAB1, interacts 94.5 0.13 2.8E-06 51.8 7.6 64 206-269 17-89 (366)
393 cd02021 GntK Gluconate kinase 94.5 0.26 5.7E-06 46.9 9.9 21 210-230 1-21 (150)
394 PRK14721 flhF flagellar biosyn 94.5 0.17 3.6E-06 56.4 9.4 88 207-296 190-278 (420)
395 PRK09519 recA DNA recombinatio 94.5 0.11 2.5E-06 61.9 8.6 85 206-297 58-148 (790)
396 PRK06762 hypothetical protein; 94.5 0.028 6.1E-07 54.8 3.1 22 209-230 3-24 (166)
397 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.18 3.8E-06 52.2 9.2 41 207-249 19-59 (229)
398 TIGR01425 SRP54_euk signal rec 94.5 0.19 4.1E-06 56.0 9.7 24 207-230 99-122 (429)
399 PRK08533 flagellar accessory p 94.5 0.17 3.8E-06 52.0 8.9 48 208-259 24-71 (230)
400 cd01135 V_A-ATPase_B V/A-type 94.5 0.14 3.1E-06 53.0 8.1 91 207-297 68-176 (276)
401 KOG2123 Uncharacterized conser 94.5 0.0033 7.1E-08 62.9 -3.5 80 589-670 37-123 (388)
402 PRK05201 hslU ATP-dependent pr 94.5 0.093 2E-06 57.6 7.1 50 181-230 15-72 (443)
403 KOG0739 AAA+-type ATPase [Post 94.4 0.4 8.8E-06 49.0 10.9 94 183-297 135-235 (439)
404 COG1120 FepC ABC-type cobalami 94.4 0.2 4.2E-06 51.5 9.0 60 273-334 142-206 (258)
405 PRK07276 DNA polymerase III su 94.4 1.4 3E-05 46.6 15.6 70 285-355 102-173 (290)
406 cd02028 UMPK_like Uridine mono 94.4 0.063 1.4E-06 52.8 5.4 21 210-230 1-21 (179)
407 COG0529 CysC Adenylylsulfate k 94.4 0.078 1.7E-06 49.9 5.5 25 206-230 21-45 (197)
408 TIGR00150 HI0065_YjeE ATPase, 94.4 0.058 1.2E-06 49.4 4.6 40 188-231 6-45 (133)
409 PRK03846 adenylylsulfate kinas 94.4 0.11 2.3E-06 52.4 7.1 25 206-230 22-46 (198)
410 smart00534 MUTSac ATPase domai 94.4 0.03 6.5E-07 55.6 3.1 21 210-230 1-21 (185)
411 COG0465 HflB ATP-dependent Zn 94.4 0.56 1.2E-05 54.1 13.4 55 179-233 148-208 (596)
412 PRK10820 DNA-binding transcrip 94.4 0.094 2E-06 61.3 7.6 134 182-327 205-349 (520)
413 cd03215 ABC_Carb_Monos_II This 94.4 0.13 2.8E-06 51.0 7.5 24 208-231 26-49 (182)
414 PRK06547 hypothetical protein; 94.4 0.036 7.7E-07 53.9 3.4 25 206-230 13-37 (172)
415 COG4133 CcmA ABC-type transpor 94.3 0.34 7.4E-06 46.4 9.6 22 209-230 29-50 (209)
416 KOG2170 ATPase of the AAA+ sup 94.3 0.098 2.1E-06 53.7 6.4 115 182-312 83-203 (344)
417 PF03308 ArgK: ArgK protein; 94.3 0.048 1E-06 55.3 4.2 65 189-257 14-78 (266)
418 PRK08149 ATP synthase SpaL; Va 94.3 0.15 3.3E-06 56.7 8.5 86 207-296 150-250 (428)
419 KOG0473 Leucine-rich repeat pr 94.3 0.002 4.2E-08 62.7 -5.3 88 586-675 35-122 (326)
420 COG3598 RepA RecA-family ATPas 94.3 0.14 3E-06 53.0 7.4 70 190-267 79-157 (402)
421 cd03244 ABCC_MRP_domain2 Domai 94.3 0.3 6.4E-06 50.2 10.3 23 208-230 30-52 (221)
422 TIGR01069 mutS2 MutS2 family p 94.3 0.04 8.7E-07 66.9 4.3 24 207-230 321-344 (771)
423 cd03369 ABCC_NFT1 Domain 2 of 94.3 0.41 8.9E-06 48.6 11.2 23 208-230 34-56 (207)
424 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.11 2.4E-06 50.0 6.6 116 209-332 26-145 (157)
425 PRK10416 signal recognition pa 94.2 0.18 3.9E-06 54.4 8.8 25 207-231 113-137 (318)
426 COG0396 sufC Cysteine desulfur 94.2 0.35 7.5E-06 47.9 9.7 25 208-232 30-54 (251)
427 COG1703 ArgK Putative periplas 94.2 0.042 9.1E-07 56.4 3.6 64 191-258 38-101 (323)
428 COG1126 GlnQ ABC-type polar am 94.2 0.22 4.8E-06 48.8 8.2 23 208-230 28-50 (240)
429 PRK11823 DNA repair protein Ra 94.2 0.22 4.8E-06 56.7 9.8 82 207-296 79-165 (446)
430 PRK08927 fliI flagellum-specif 94.2 0.23 4.9E-06 55.5 9.5 86 207-296 157-257 (442)
431 TIGR00416 sms DNA repair prote 94.2 0.29 6.2E-06 55.8 10.6 54 190-249 80-133 (454)
432 PF00560 LRR_1: Leucine Rich R 94.2 0.025 5.3E-07 33.5 1.1 22 594-616 1-22 (22)
433 PRK06002 fliI flagellum-specif 94.1 0.18 3.9E-06 56.3 8.7 87 207-296 164-263 (450)
434 KOG0743 AAA+-type ATPase [Post 94.1 0.61 1.3E-05 51.1 12.3 24 208-231 235-258 (457)
435 TIGR01420 pilT_fam pilus retra 94.1 0.14 3E-06 56.4 7.8 108 209-327 123-230 (343)
436 TIGR01313 therm_gnt_kin carboh 94.1 0.097 2.1E-06 50.8 6.0 20 211-230 1-20 (163)
437 COG0467 RAD55 RecA-superfamily 94.1 0.062 1.3E-06 56.8 4.9 42 206-249 21-62 (260)
438 TIGR03498 FliI_clade3 flagella 94.1 0.18 3.8E-06 56.3 8.5 86 207-296 139-239 (418)
439 PRK10875 recD exonuclease V su 94.1 0.15 3.3E-06 60.0 8.5 116 209-329 168-304 (615)
440 PRK14723 flhF flagellar biosyn 94.1 0.21 4.6E-06 59.5 9.6 87 208-297 185-273 (767)
441 COG2842 Uncharacterized ATPase 94.1 0.86 1.9E-05 47.2 12.7 116 182-310 73-188 (297)
442 PRK03839 putative kinase; Prov 94.1 0.035 7.6E-07 54.9 2.8 21 210-230 2-22 (180)
443 PRK07594 type III secretion sy 94.1 0.22 4.8E-06 55.6 9.2 86 207-296 154-254 (433)
444 PRK04040 adenylate kinase; Pro 94.1 0.041 8.8E-07 54.5 3.2 22 209-230 3-24 (188)
445 KOG0737 AAA+-type ATPase [Post 94.0 0.23 5.1E-06 52.6 8.7 29 208-238 127-155 (386)
446 PF13479 AAA_24: AAA domain 94.0 0.15 3.3E-06 51.8 7.5 31 209-249 4-34 (213)
447 TIGR01360 aden_kin_iso1 adenyl 94.0 0.042 9.1E-07 54.9 3.3 24 207-230 2-25 (188)
448 PF13245 AAA_19: Part of AAA d 94.0 0.076 1.6E-06 43.4 4.2 22 209-230 11-32 (76)
449 PRK13543 cytochrome c biogenes 94.0 0.43 9.4E-06 48.7 10.7 24 208-231 37-60 (214)
450 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.21 4.5E-06 50.3 8.3 24 208-231 26-49 (200)
451 PRK12597 F0F1 ATP synthase sub 94.0 0.12 2.6E-06 58.1 7.0 89 207-296 142-246 (461)
452 PRK00625 shikimate kinase; Pro 94.0 0.037 8.1E-07 53.8 2.7 21 210-230 2-22 (173)
453 PRK05917 DNA polymerase III su 94.0 0.75 1.6E-05 48.5 12.4 131 190-344 6-154 (290)
454 PRK05986 cob(I)alamin adenolsy 94.0 0.2 4.4E-06 48.8 7.6 119 207-327 21-158 (191)
455 PRK06731 flhF flagellar biosyn 93.9 0.47 1E-05 49.7 10.9 89 208-298 75-165 (270)
456 PF12775 AAA_7: P-loop contain 93.9 0.063 1.4E-06 56.6 4.4 33 191-230 23-55 (272)
457 cd03254 ABCC_Glucan_exporter_l 93.9 0.38 8.3E-06 49.7 10.3 23 209-231 30-52 (229)
458 TIGR03522 GldA_ABC_ATP gliding 93.8 0.34 7.3E-06 52.4 10.0 24 208-231 28-51 (301)
459 PRK06995 flhF flagellar biosyn 93.8 0.22 4.8E-06 56.5 8.7 88 208-297 256-344 (484)
460 PF13504 LRR_7: Leucine rich r 93.8 0.04 8.6E-07 30.2 1.4 16 618-633 2-17 (17)
461 PRK09280 F0F1 ATP synthase sub 93.8 0.24 5.3E-06 55.5 8.9 89 207-296 143-247 (463)
462 COG1428 Deoxynucleoside kinase 93.8 0.041 8.9E-07 53.7 2.5 24 208-231 4-27 (216)
463 PRK13765 ATP-dependent proteas 93.8 0.092 2E-06 61.9 5.8 75 181-265 31-105 (637)
464 TIGR03575 selen_PSTK_euk L-ser 93.8 0.16 3.6E-06 54.8 7.3 20 211-230 2-21 (340)
465 PRK06217 hypothetical protein; 93.8 0.089 1.9E-06 52.2 5.0 22 210-231 3-24 (183)
466 TIGR03574 selen_PSTK L-seryl-t 93.8 0.15 3.2E-06 53.5 6.9 20 211-230 2-21 (249)
467 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.31 6.7E-06 50.6 9.0 87 207-297 68-171 (274)
468 COG0714 MoxR-like ATPases [Gen 93.7 0.12 2.6E-06 56.7 6.4 106 182-310 25-135 (329)
469 cd03245 ABCC_bacteriocin_expor 93.7 0.39 8.5E-06 49.3 9.9 23 208-230 30-52 (220)
470 KOG0726 26S proteasome regulat 93.7 0.41 8.8E-06 48.7 9.3 56 181-238 185-247 (440)
471 PTZ00185 ATPase alpha subunit; 93.7 0.35 7.6E-06 54.3 9.7 91 207-297 188-299 (574)
472 cd03233 ABC_PDR_domain1 The pl 93.7 0.42 9.2E-06 48.2 9.8 24 208-231 33-56 (202)
473 PRK12678 transcription termina 93.7 0.13 2.8E-06 58.3 6.3 98 192-296 405-512 (672)
474 PF06309 Torsin: Torsin; Inte 93.6 0.11 2.4E-06 46.5 4.8 41 188-231 36-76 (127)
475 cd01134 V_A-ATPase_A V/A-type 93.6 0.53 1.1E-05 50.5 10.5 49 207-259 156-205 (369)
476 TIGR02329 propionate_PrpR prop 93.6 0.17 3.6E-06 58.7 7.5 45 182-230 213-257 (526)
477 cd03251 ABCC_MsbA MsbA is an e 93.6 0.64 1.4E-05 48.2 11.3 23 208-230 28-50 (234)
478 PRK11388 DNA-binding transcrip 93.6 0.24 5.2E-06 60.0 9.2 130 182-326 326-466 (638)
479 cd01136 ATPase_flagellum-secre 93.6 0.43 9.3E-06 51.3 10.0 85 208-296 69-168 (326)
480 PRK15453 phosphoribulokinase; 93.6 0.37 8E-06 50.1 9.1 78 207-286 4-89 (290)
481 cd02029 PRK_like Phosphoribulo 93.6 0.18 4E-06 51.8 6.8 77 210-288 1-85 (277)
482 cd00984 DnaB_C DnaB helicase C 93.5 0.45 9.7E-06 49.7 10.2 53 207-262 12-64 (242)
483 COG3640 CooC CO dehydrogenase 93.5 0.11 2.3E-06 51.5 4.9 45 210-255 2-46 (255)
484 PRK00131 aroK shikimate kinase 93.5 0.056 1.2E-06 53.2 3.1 23 208-230 4-26 (175)
485 cd03253 ABCC_ATM1_transporter 93.5 0.47 1E-05 49.3 10.1 24 208-231 27-50 (236)
486 COG1419 FlhF Flagellar GTP-bin 93.5 0.25 5.3E-06 53.7 8.0 89 207-298 202-292 (407)
487 TIGR01447 recD exodeoxyribonuc 93.5 0.22 4.8E-06 58.6 8.3 116 209-329 161-298 (586)
488 COG0003 ArsA Predicted ATPase 93.5 0.12 2.6E-06 55.4 5.5 48 208-257 2-49 (322)
489 TIGR01359 UMP_CMP_kin_fam UMP- 93.4 0.049 1.1E-06 54.1 2.5 21 210-230 1-21 (183)
490 PRK06936 type III secretion sy 93.4 0.24 5.3E-06 55.2 8.0 86 207-296 161-261 (439)
491 cd02024 NRK1 Nicotinamide ribo 93.4 0.052 1.1E-06 53.4 2.5 21 210-230 1-21 (187)
492 TIGR00041 DTMP_kinase thymidyl 93.4 0.3 6.5E-06 49.0 8.3 23 209-231 4-26 (195)
493 CHL00206 ycf2 Ycf2; Provisiona 93.4 0.37 8E-06 62.1 10.4 25 207-231 1629-1653(2281)
494 PRK00409 recombination and DNA 93.4 0.069 1.5E-06 65.1 4.1 176 207-407 326-522 (782)
495 cd02023 UMPK Uridine monophosp 93.4 0.047 1E-06 55.0 2.3 21 210-230 1-21 (198)
496 PRK10751 molybdopterin-guanine 93.4 0.078 1.7E-06 51.1 3.7 24 207-230 5-28 (173)
497 TIGR02322 phosphon_PhnN phosph 93.4 0.061 1.3E-06 53.2 3.1 22 209-230 2-23 (179)
498 cd00227 CPT Chloramphenicol (C 93.4 0.062 1.3E-06 52.8 3.1 22 209-230 3-24 (175)
499 PRK06793 fliI flagellum-specif 93.3 0.2 4.3E-06 55.9 7.2 88 207-298 155-257 (432)
500 COG1936 Predicted nucleotide k 93.3 0.064 1.4E-06 50.5 2.9 20 210-229 2-21 (180)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-84 Score=763.88 Aligned_cols=828 Identities=29% Similarity=0.425 Sum_probs=595.4
Q ss_pred HHHHHHHHHHHHhcHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhccchhhhHHHHH
Q 044195 9 LTASFELLIKKLASLELFTQHEKLKADFMRWKDKMEMIQAVLADAEDRQTKDKSVKKWLDKLQNLAYDVEDILDEFETEA 88 (1024)
Q Consensus 9 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~~~~~~ 88 (1024)
++..++++.+.+...... ..++++.+..|++++..++++++|+++++.....+..|...+++++|++||.++.|....
T Consensus 5 ~s~~~~~~~~~l~~~~~~--~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~ 82 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESEC--LDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEE 82 (889)
T ss_pred EEEehhhHHHHHHHHHHH--HhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555543322222 234667899999999999999999999988888999999999999999999999999988
Q ss_pred HHHHHhhcCCCCcCCCCccccccccccccccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCc-cc
Q 044195 89 LRREMLLQGPAAADQPGTSTSKFRKLIPTGCTNFSPRSIQFDSMMVSKMKEVTARLQDIERDINLLKLKNVISDGTS-RS 167 (1024)
Q Consensus 89 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 167 (1024)
.+.+.. + .-.......+. . |. ..+.+..+..+..+.+++-.+......++.......+.. ..
T Consensus 83 ~~~~~~-~-------~l~~~~~~~~~--~-c~------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~ 145 (889)
T KOG4658|consen 83 IERKAN-D-------LLSTRSVERQR--L-CL------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLD 145 (889)
T ss_pred HHHHHh-H-------HhhhhHHHHHH--H-hh------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccccc
Confidence 776543 1 00000001111 1 11 124555666666666776666666666665543322111 11
Q ss_pred CCCCCCCccccccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChh-hhccCCceEEEEe
Q 044195 168 IGQRLPTTSLVNEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDR-VQRRFQIKAWTFV 246 (1024)
Q Consensus 168 ~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~ 246 (1024)
..+..++.+...... ||.++.++++.+.|.+.+ .++++|+||||+||||||++++|+.. ++.+|+.++||.|
T Consensus 146 ~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V 218 (889)
T KOG4658|consen 146 PREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV 218 (889)
T ss_pred chhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE
Confidence 112234445555555 999999999999998763 28999999999999999999999887 9999999999999
Q ss_pred cCCCCHHHHHHHHHHhccCCCCCC--CcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc
Q 044195 247 SEDFNVFRVTKSILKSITNDQSKD--DDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT 324 (1024)
Q Consensus 247 ~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 324 (1024)
|+.++...++++|++.++...... ...++++..+.+.|+++||+||+||||+.. +|+.+..++|....||||++||
T Consensus 219 Sk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTT 296 (889)
T KOG4658|consen 219 SKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTT 296 (889)
T ss_pred cccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEe
Confidence 999999999999999988754433 334688899999999999999999999974 5999999999998999999999
Q ss_pred CCchhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHH
Q 044195 325 RNLRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDW 403 (1024)
Q Consensus 325 R~~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w 403 (1024)
|+..|+.. +++...++++.|+++|||.||.+.|+.... ..++.++++|++|+++|+|+|||++++|+.|+.+++.++|
T Consensus 297 Rs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW 375 (889)
T KOG4658|consen 297 RSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEW 375 (889)
T ss_pred ccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHH
Confidence 99999998 777889999999999999999999987644 4556699999999999999999999999999999999999
Q ss_pred HHHHhccccCC----CCCCCChhhHHHhhhcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHHH
Q 044195 404 EFVLNNDICNL----PEENCNIIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDL 479 (1024)
Q Consensus 404 ~~~l~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~~ 479 (1024)
+++.+...+.. +...+.+..++.+||+.||++.|.||+|||+||+||.|+++.++.+|+||||+.....+..+++.
T Consensus 376 ~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~ 455 (889)
T KOG4658|consen 376 RRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDV 455 (889)
T ss_pred HHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcc
Confidence 99998776552 22346789999999999998899999999999999999999999999999999987778999999
Q ss_pred HHHHHHHHHhcCCccccC--CCCCcEEEchhHHHHHHHHhc-----CceEEeccc--cccccccccccceeEEEEEccCC
Q 044195 480 GREFVQELLSRSFFQRSS--KNASRFLMHDLINDLARWAAG-----GICFRLEYT--LESENRQMFSQSLRHFSYIRGEC 550 (1024)
Q Consensus 480 ~~~~~~~Lv~~~l~~~~~--~~~~~~~~Hdli~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~ 550 (1024)
|++|+.+||+++++.... .....|+|||+||++|.++++ .+...+... ....+....+...|+++++++..
T Consensus 456 G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~ 535 (889)
T KOG4658|consen 456 GYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI 535 (889)
T ss_pred hHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch
Confidence 999999999999999876 245789999999999999999 444443321 11122223456789999998754
Q ss_pred CCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcc
Q 044195 551 DGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQ 630 (1024)
Q Consensus 551 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~ 630 (1024)
.. ...-..+++|++|.+..+.+ ++.......|..++.|++|||++|..+.++|+.|++|-+||||+|+++.++
T Consensus 536 ~~---~~~~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 536 EH---IAGSSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred hh---ccCCCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence 32 23334666899999988752 122223334688999999999999899999999999999999999999999
Q ss_pred ccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCccccccc
Q 044195 631 ILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELK 710 (1024)
Q Consensus 631 ~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~ 710 (1024)
.+|.++.+|.+|.+||+..+..+..+|.....|++||+|.+.... ...-...++++.+|++|..+.....+......+.
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~ 687 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLL 687 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhh
Confidence 999999999999999999988777777777779999999987654 2222223556666777666555443332233344
Q ss_pred CcccCCCceEec-cCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhcc--C-CCCCccE
Q 044195 711 SLTNLQGTLEIS-SLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDML--K-PHQKLEE 786 (1024)
Q Consensus 711 ~L~~L~~~L~i~-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l--~-~~~~L~~ 786 (1024)
.+..|. .+... .... .........+..+.+|+.|.+..|......- ...... . ..+++..
T Consensus 688 ~~~~L~-~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-------------~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 688 GMTRLR-SLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVI-------------EWEESLIVLLCFPNLSK 751 (889)
T ss_pred hhHHHH-HHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhc-------------ccccccchhhhHHHHHH
Confidence 444333 11111 0011 1223344456667777777777776521000 000000 0 1234444
Q ss_pred EEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCC-CCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCccee
Q 044195 787 LTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSL-PSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETL 865 (1024)
Q Consensus 787 L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L 865 (1024)
+.+.++.....+.|... .++|+.|.+..|...+.+ |....+..++.+.+ +|.++..+
T Consensus 752 ~~~~~~~~~r~l~~~~f--~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~--------------------~f~~~~~l 809 (889)
T KOG4658|consen 752 VSILNCHMLRDLTWLLF--APHLTSLSLVSCRLLEDIIPKLKALLELKELIL--------------------PFNKLEGL 809 (889)
T ss_pred HHhhccccccccchhhc--cCcccEEEEecccccccCCCHHHHhhhcccEEe--------------------cccccccc
Confidence 44555555555555432 466666666666655442 23333333333222 24444444
Q ss_pred -eccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecc
Q 044195 866 -CFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSC 922 (1024)
Q Consensus 866 -~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c 922 (1024)
.+.+...+..+...... ++.|+.+.+..||++. . +|.+..+.+.+|
T Consensus 810 ~~~~~l~~l~~i~~~~l~------~~~l~~~~ve~~p~l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 810 RMLCSLGGLPQLYWLPLS------FLKLEELIVEECPKLG-K----LPLLSTLTIVGC 856 (889)
T ss_pred eeeecCCCCceeEecccC------ccchhheehhcCcccc-c----Cccccccceecc
Confidence 34444444443333222 4557777777777666 2 344555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-63 Score=620.15 Aligned_cols=689 Identities=21% Similarity=0.262 Sum_probs=486.4
Q ss_pred ccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEe---cCC------
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFV---SED------ 249 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~------ 249 (1024)
....+|||++.++++..+|.-. ...+++|+|+||||+||||||+++|+ ++..+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 3456999999999999988543 35789999999999999999999998 67888998888742 111
Q ss_pred -----CC-HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEE
Q 044195 250 -----FN-VFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVT 323 (1024)
Q Consensus 250 -----~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvT 323 (1024)
.+ ...++++++.++......... . ...+++.++++|+||||||||+. ..|+.+.......++||+||||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~--~-~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIY--H-LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccC--C-HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 123445555554333211110 1 14567788999999999999764 5788887666656789999999
Q ss_pred cCCchhhhccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHH
Q 044195 324 TRNLRVTVNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDW 403 (1024)
Q Consensus 324 tR~~~~~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w 403 (1024)
||+..++..++..++|+++.+++++||+||+++||+... ..+.+.+++++|+++|+|+|||++++|++|+++ +..+|
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W 407 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDW 407 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHH
Confidence 999999877777789999999999999999999997642 345678999999999999999999999999987 68999
Q ss_pred HHHHhccccCCCCCCCChhhHHHhhhcCCChh-HHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHHHHHH
Q 044195 404 EFVLNNDICNLPEENCNIIPALGVSCHFLPPQ-LKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLGRE 482 (1024)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~-~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~~~~~ 482 (1024)
..++.+...... ..+.++|++||+.|+++ .|.||+++|+||.+..++ .+..|.+.+.+.. +.
T Consensus 408 ~~~l~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~ 470 (1153)
T PLN03210 408 MDMLPRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NI 470 (1153)
T ss_pred HHHHHHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hh
Confidence 999988665432 45999999999999874 999999999999987543 3667777654432 22
Q ss_pred HHHHHHhcCCccccCCCCCcEEEchhHHHHHHHHhcCce-------EEecc-cccc-ccccccccceeEEEEEccCCCC-
Q 044195 483 FVQELLSRSFFQRSSKNASRFLMHDLINDLARWAAGGIC-------FRLEY-TLES-ENRQMFSQSLRHFSYIRGECDG- 552 (1024)
Q Consensus 483 ~~~~Lv~~~l~~~~~~~~~~~~~Hdli~~~~~~~~~~~~-------~~~~~-~~~~-~~~~~~~~~~r~ls~~~~~~~~- 552 (1024)
.++.|++++|++... .++.|||++|++++.++.++. +.... +... -........++.+++.......
T Consensus 471 ~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred ChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 388999999998754 579999999999999986543 11000 0000 0011233556777665433221
Q ss_pred CcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCC-CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccc
Q 044195 553 GTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDL-PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQI 631 (1024)
Q Consensus 553 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~ 631 (1024)
......|.+|++|+.|.+.....-.........+..+..+ .+||.|.+.++ .+..+|..+ ...+|+.|+++++.+..
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccc
Confidence 1123457789999999886542100111223345556555 46999999999 799999877 57999999999999999
Q ss_pred cCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccC
Q 044195 632 LPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKS 711 (1024)
Q Consensus 632 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 711 (1024)
+|..+..+++|+.|++++|..+..+|. ++.+++|+.|++++|..+..+|..++++++|+.|....+.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~------------ 692 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE------------ 692 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC------------
Confidence 999999999999999999888888874 8899999999999998899999999999999888443221
Q ss_pred cccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEe
Q 044195 712 LTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITG 791 (1024)
Q Consensus 712 L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 791 (1024)
.+. .+ +..+ ++++|+.|++++|... ...+. .+++|+.|++.+
T Consensus 693 --~L~-~L---------------p~~i-~l~sL~~L~Lsgc~~L----------------~~~p~---~~~nL~~L~L~~ 734 (1153)
T PLN03210 693 --NLE-IL---------------PTGI-NLKSLYRLNLSGCSRL----------------KSFPD---ISTNISWLDLDE 734 (1153)
T ss_pred --CcC-cc---------------CCcC-CCCCCCEEeCCCCCCc----------------ccccc---ccCCcCeeecCC
Confidence 111 00 0111 3467777777776530 00111 135778888888
Q ss_pred cCCCCCCcccCCCCCCCceEEEEecCCCCCC------CC--CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcc
Q 044195 792 YGGTKFPIWLGDFPFSKLVSLKFEYCGMCTS------LP--SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLE 863 (1024)
Q Consensus 792 ~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~------l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 863 (1024)
+....+|..+. +++|++|.+.++..... ++ .....++|+.|++++|+.+..++..+ ..+++|+
T Consensus 735 n~i~~lP~~~~---l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si------~~L~~L~ 805 (1153)
T PLN03210 735 TAIEEFPSNLR---LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI------QNLHKLE 805 (1153)
T ss_pred Ccccccccccc---ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh------hCCCCCC
Confidence 87777776653 67788887776542211 11 11234677777777777666665443 2267777
Q ss_pred eeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEeccc--CccccCCCCCCcCEEEEc
Q 044195 864 TLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCK--QLLVTIQCLPALSELQIR 941 (1024)
Q Consensus 864 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~ 941 (1024)
.|++++|.++..+... . . +++|+.|++++|..+. .+|...++|+.|+++++. .+|..+..+++|+.|+++
T Consensus 806 ~L~Ls~C~~L~~LP~~-~--~----L~sL~~L~Ls~c~~L~-~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 806 HLEIENCINLETLPTG-I--N----LESLESLDLSGCSRLR-TFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred EEECCCCCCcCeeCCC-C--C----ccccCEEECCCCCccc-cccccccccCEeECCCCCCccChHHHhcCCCCCEEECC
Confidence 7777777666654321 1 1 6777777777777666 666666677777776663 445566667777777777
Q ss_pred cCCCccccCC--CCCCCccEEEEcCCCCcccc
Q 044195 942 GCRRVVFSSP--IDFSSLKSVFLGDIANQVVL 971 (1024)
Q Consensus 942 ~~~~l~~~~~--~~l~~L~~L~l~~c~~l~~l 971 (1024)
+|+.+..++. ..+++|+.|++++|..++.+
T Consensus 878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 878 GCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 7776665543 34566777777777666544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.5e-42 Score=370.00 Aligned_cols=277 Identities=36% Similarity=0.607 Sum_probs=224.8
Q ss_pred chhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccC
Q 044195 186 REKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITN 265 (1024)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 265 (1024)
||.++++|.++|.... .+.++|+|+||||+||||||.+++++.+++.+|+.++|++++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998752 578999999999999999999999976689999999999999999999999999999987
Q ss_pred CCC---CCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhccCC-ccceec
Q 044195 266 DQS---KDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNMGA-DQAYQL 341 (1024)
Q Consensus 266 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~~-~~~~~l 341 (1024)
... ...+.+.....+.+.++++++||||||+|+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567788999999999999999999999764 4788888777777779999999999988877654 678999
Q ss_pred CCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhccccCCC---CCC
Q 044195 342 KELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVLNNDICNLP---EEN 418 (1024)
Q Consensus 342 ~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 418 (1024)
++|+++||++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++....... ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 12334456788999999999999999999999766677899998876544432 234
Q ss_pred CChhhHHHhhhcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCccc
Q 044195 419 CNIIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQ 469 (1024)
Q Consensus 419 ~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~ 469 (1024)
..+..++.+||+.||++.|.||+|||+||+++.|+++.++++|+++|++..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 679999999999999999999999999999999999999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.4e-30 Score=330.53 Aligned_cols=429 Identities=21% Similarity=0.223 Sum_probs=261.3
Q ss_pred CCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcc-ccCcccccC
Q 044195 561 GVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQ-ILPQSINSL 639 (1024)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L 639 (1024)
.+++|++|.+.++. +....+..+..+++|++|+|++|.....+|..++++++|++|+|++|.+. .+|..++++
T Consensus 138 ~l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 138 SIPNLETLDLSNNM------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred ccCCCCEEECcCCc------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 34556666655543 33344455566666666666666333456666666666666666666655 456666666
Q ss_pred CCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCce
Q 044195 640 YNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTL 719 (1024)
Q Consensus 640 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 719 (1024)
++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|....+. ..+..+..+..+++|+ .|
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~-~L 289 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIFSLQKLI-SL 289 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe-eeccCchhHhhccCcC-EE
Confidence 666666666664444566666666666666666665334556666666666666433221 1122233344444444 44
Q ss_pred EeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCC--------ccccccccccchhhHHHHhhccCCCCCccEEEEEe
Q 044195 720 EISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSC--------ISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITG 791 (1024)
Q Consensus 720 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 791 (1024)
.+..... ...++..+..+++|+.|++++|.... ++.++.++..........+..+..+++|+.|++++
T Consensus 290 ~Ls~n~l----~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 290 DLSDNSL----SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred ECcCCee----ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 4432211 11233344555566666665554311 11112222221111222333445556666666666
Q ss_pred cCCC-CCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccc
Q 044195 792 YGGT-KFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVN 869 (1024)
Q Consensus 792 ~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 869 (1024)
|... ..|.++.. +++|+.|++++|.....+| .++.+++|+.|++++|.....++..+ ..+++|+.|++++
T Consensus 366 n~l~~~~p~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~Ls~ 437 (968)
T PLN00113 366 NNLTGEIPEGLCS--SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF------TKLPLVYFLDISN 437 (968)
T ss_pred CeeEeeCChhHhC--cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH------hcCCCCCEEECcC
Confidence 6543 34555443 5666777777666555555 46677778888877775444443332 2377888888887
Q ss_pred cccccccccccccccccccCcccceeeeccCcCCcccCCC--CCCCccEEEEeccc---CccccCCCCCCcCEEEEccCC
Q 044195 870 MQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPE--RLLLLEKLVIQSCK---QLLVTIQCLPALSELQIRGCR 944 (1024)
Q Consensus 870 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~--~l~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~~~ 944 (1024)
+. +....+..... +++|+.|++++| .+.+.+|. ..++|+.|++++|. ..|..+..+++|+.|++++|.
T Consensus 438 N~-l~~~~~~~~~~-----l~~L~~L~L~~n-~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 438 NN-LQGRINSRKWD-----MPSLQMLSLARN-KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510 (968)
T ss_pred Cc-ccCccChhhcc-----CCCCcEEECcCc-eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence 43 33322222122 789999999998 55557774 35789999999885 345667889999999999998
Q ss_pred CccccCC--CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCCCC
Q 044195 945 RVVFSSP--IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCPQL 1021 (1024)
Q Consensus 945 ~l~~~~~--~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~~L 1021 (1024)
.....|. ..+++|+.|++++|.....+|. .+.++++|+.|++++|.....+ |..+.++++|+.|++++|+-.
T Consensus 511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEI----PKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ceeeCChHHcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCCCcccccC----ChhHhcCcccCEEeccCCcce
Confidence 5444443 5678999999998765555554 6778999999999999776677 778999999999999999743
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=7.9e-30 Score=323.58 Aligned_cols=394 Identities=19% Similarity=0.220 Sum_probs=240.9
Q ss_pred CCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcc-ccCcccccCCCCcEEecCCCccccccccccCCCCcccE
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQ-ILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHH 668 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 668 (1024)
..+++|++|+|++|.....+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34566666666666322355666666777777777766654 56666666777777777666544556666667777777
Q ss_pred EeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 669 LRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 669 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
|++++|.....+|..++++++|++|+...+. ..+..+..+..+++|+ .|.+..... ....+..+..+++|++|+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~-~L~L~~n~l----~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQ-YLFLYQNKL----SGPIPPSIFSLQKLISLD 290 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCC-EEECcCCee----eccCchhHhhccCcCEEE
Confidence 7776666444566666666666666443322 2223344455555555 554433211 112334455666777777
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCC-CCCcccCCCCCCCceEEEEecCCCCCCCC-CC
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGT-KFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SV 826 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l 826 (1024)
+++|.. ....+..+..+++|+.|++++|... ..|.++.. +++|+.|++++|.....+| .+
T Consensus 291 Ls~n~l----------------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 291 LSDNSL----------------SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred CcCCee----------------ccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCCCCcCcCChHH
Confidence 766654 1223344556677777777776653 34555543 6777777777776655555 56
Q ss_pred CCCCCCceeeecCCCCceEeccccccC------------------CCCCCCCCcceeecccccccccccccccccccccc
Q 044195 827 GQLPVLKHLEMRGMDRVKSVGLEFYGN------------------SCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEV 888 (1024)
Q Consensus 827 ~~l~~L~~L~L~~~~~l~~~~~~~~~~------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 888 (1024)
+.+++|+.|++++|.....++..+... .....+++|+.|++.++. +....+..+..
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~----- 426 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEFTK----- 426 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChhHhc-----
Confidence 667777777777665433333222110 001235666666666543 22222222222
Q ss_pred CcccceeeeccCcCCcccCCC---CCCCccEEEEecccC---ccccCCCCCCcCEEEEccCCCccccCC--CCCCCccEE
Q 044195 889 FPKLRKLSLLRCSKLQGTLPE---RLLLLEKLVIQSCKQ---LLVTIQCLPALSELQIRGCRRVVFSSP--IDFSSLKSV 960 (1024)
Q Consensus 889 ~~~L~~L~l~~c~~L~~~lp~---~l~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~--~~l~~L~~L 960 (1024)
+++|+.|++++| .+++.+|. .+++|+.|++++|.. +|..+ ..++|+.|++++|......|. ..+++|+.|
T Consensus 427 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 504 (968)
T PLN00113 427 LPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504 (968)
T ss_pred CCCCCEEECcCC-cccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEE
Confidence 677778888777 56655553 567888888887753 23322 356788888888874433332 457789999
Q ss_pred EEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCCC
Q 044195 961 FLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCPQ 1020 (1024)
Q Consensus 961 ~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~~ 1020 (1024)
++++|.....+|. .+.++++|+.|++++|...+.+ |..+..+++|+.|++++|.-
T Consensus 505 ~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 505 KLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQI----PASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred ECcCCcceeeCCh-HHcCccCCCEEECCCCcccccC----ChhHhCcccCCEEECCCCcc
Confidence 9998765555654 5678999999999999666666 77889999999999999864
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.4e-22 Score=256.54 Aligned_cols=227 Identities=19% Similarity=0.187 Sum_probs=157.2
Q ss_pred HHHHHHHhcCCcccCCCCccHHHHHHHHHHHHHhcCCccccCCCCCcEEEchhHHHHHHHHhcCceEE---eccc-----
Q 044195 456 EIISLWAAEGFLHQENSGRKMEDLGREFVQELLSRSFFQRSSKNASRFLMHDLINDLARWAAGGICFR---LEYT----- 527 (1024)
Q Consensus 456 ~li~~w~~~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~~~~~~~~~~Hdli~~~~~~~~~~~~~~---~~~~----- 527 (1024)
..+..+++.++|+...+...||+..+++.++++.....+ ++ ...+.+.++-+.++.....+.+... ++..
T Consensus 470 ~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~-~~-~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 470 IGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNE-PG-EREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred hChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCC-CC-cceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 347788999999876667899999999999998776522 22 3456666766777665544333221 1110
Q ss_pred -cccccccccccceeEEEEEccCCCCC-----cccccccCC-CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEe
Q 044195 528 -LESENRQMFSQSLRHFSYIRGECDGG-----TRFDFIRGV-QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSL 600 (1024)
Q Consensus 528 -~~~~~~~~~~~~~r~ls~~~~~~~~~-----~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 600 (1024)
.....- ......+.+.+..+..... .....+..+ .+||.|.+.++.- ...+.. ..+.+|+.|+|
T Consensus 548 ~i~~~aF-~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-------~~lP~~-f~~~~L~~L~L 618 (1153)
T PLN03210 548 HIHENAF-KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-------RCMPSN-FRPENLVKLQM 618 (1153)
T ss_pred eecHHHH-hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-------CCCCCc-CCccCCcEEEC
Confidence 000000 1123445555543321110 011223333 4588888766531 222223 35789999999
Q ss_pred CCCCCcccCCccccCCCCCcEeeccCCC-ccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccc
Q 044195 601 CGYCNIIDLPNEIGNLKHLRFLNLSRTN-IQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEE 679 (1024)
Q Consensus 601 ~~~~~l~~lp~~l~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ 679 (1024)
++| .+..+|..+..+++|++|+|+++. +..+|. ++.+++|++|++++|..+..+|..++++++|+.|++++|..+..
T Consensus 619 ~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 619 QGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 999 799999999999999999999875 677874 88999999999999999999999999999999999999988999
Q ss_pred cCccCCCCCCCCccCce
Q 044195 680 MPKGFGKLTCLTTLCRF 696 (1024)
Q Consensus 680 ~p~~i~~l~~L~~L~~~ 696 (1024)
+|..+ ++++|+.|...
T Consensus 697 Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred cCCcC-CCCCCCEEeCC
Confidence 99876 67888877543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=5.7e-26 Score=230.20 Aligned_cols=394 Identities=20% Similarity=0.206 Sum_probs=221.7
Q ss_pred hhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCC
Q 044195 585 VLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLT 664 (1024)
Q Consensus 585 ~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 664 (1024)
.++.++.+..+..|+.++| .+.++|..++.+..|+.|+.++|.+.++|++|+.+..|+.|+..+| .+..+|.+++.+.
T Consensus 83 lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLS 160 (565)
T ss_pred CCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHH
Confidence 3444444555555555555 4555555555555555555555555555555555555555555544 4455555555555
Q ss_pred cccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCC
Q 044195 665 KLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNL 744 (1024)
Q Consensus 665 ~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L 744 (1024)
+|..|++.+|+ +..+|+..-+++.|++|+...+ .-...+.+++.+..|. .+.+... . . .+...+.+|..|
T Consensus 161 ~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~-~LyL~~N---k--i-~~lPef~gcs~L 230 (565)
T KOG0472|consen 161 KLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLE-LLYLRRN---K--I-RFLPEFPGCSLL 230 (565)
T ss_pred HHHHhhccccc-hhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhH-HHHhhhc---c--c-ccCCCCCccHHH
Confidence 55555555554 4444444434555554422111 0112233333333332 2211111 0 0 111134455555
Q ss_pred CcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC
Q 044195 745 EALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP 824 (1024)
Q Consensus 745 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 824 (1024)
.+|++..|.+ .....+.+..+++|..|++..|+..++|..+.. +.+|.+|++++|....-.+
T Consensus 231 ~Elh~g~N~i----------------~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 231 KELHVGENQI----------------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPY 292 (565)
T ss_pred HHHHhcccHH----------------HhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCc
Confidence 5555554443 333345566889999999999999999998865 8899999999998655555
Q ss_pred CCCCCCCCceeeecCCCCceEecccc------------------------ccC------CCCCCCC------Ccceeecc
Q 044195 825 SVGQLPVLKHLEMRGMDRVKSVGLEF------------------------YGN------SCSAPFP------SLETLCFV 868 (1024)
Q Consensus 825 ~l~~l~~L~~L~L~~~~~l~~~~~~~------------------------~~~------~~~~~~~------~L~~L~l~ 868 (1024)
.++++ .|++|.+.|++. +++-.+. .+. .....|| +.+.|+++
T Consensus 293 sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred ccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 89999 999999999762 1110000 000 0111222 35555555
Q ss_pred cccccccccccccc-------------ccccc----cCc---ccc-eeeeccCcCCcccCC---CCCCCccEEEEecc--
Q 044195 869 NMQEWEEWIPRGFA-------------QEVNE----VFP---KLR-KLSLLRCSKLQGTLP---ERLLLLEKLVIQSC-- 922 (1024)
Q Consensus 869 ~~~~l~~~~~~~~~-------------~~~~~----~~~---~L~-~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c-- 922 (1024)
+ .+++......+. ..... .++ .+. .+.++++ .+. .+| +.+++|..|+++++
T Consensus 371 ~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn-~is-fv~~~l~~l~kLt~L~L~NN~L 447 (565)
T KOG0472|consen 371 D-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN-KIS-FVPLELSQLQKLTFLDLSNNLL 447 (565)
T ss_pred c-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC-ccc-cchHHHHhhhcceeeecccchh
Confidence 4 122211111000 00000 011 111 1223332 333 344 46688888888887
Q ss_pred cCccccCCCCCCcCEEEEccCCCccccCC--CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccc
Q 044195 923 KQLLVTIQCLPALSELQIRGCRRVVFSSP--IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSE 1000 (1024)
Q Consensus 923 ~~l~~~l~~l~~L~~L~l~~~~~l~~~~~--~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1000 (1024)
..+|..++.+..|+.|+++.|+ ....|. ..+..|+.+-. ..+.+..++...+.++.+|..|++.++ .+..+
T Consensus 448 n~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtlla-s~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~I---- 520 (565)
T KOG0472|consen 448 NDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLA-SNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQI---- 520 (565)
T ss_pred hhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHh-ccccccccChHHhhhhhhcceeccCCC-chhhC----
Confidence 4778888888889999998885 332222 11223444333 446778888777889999999999988 77788
Q ss_pred cccccCCCCCCEEeeeCCCC
Q 044195 1001 TRLLQDIRSLNRLHISRCPQ 1020 (1024)
Q Consensus 1001 p~~l~~l~~L~~L~l~~c~~ 1020 (1024)
|..++++++|++|.++|+|-
T Consensus 521 Pp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ChhhccccceeEEEecCCcc
Confidence 78999999999999999973
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2e-23 Score=221.23 Aligned_cols=360 Identities=17% Similarity=0.170 Sum_probs=218.5
Q ss_pred CceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccC-cccccCCCC
Q 044195 564 QLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILP-QSINSLYNL 642 (1024)
Q Consensus 564 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L 642 (1024)
.-++|.+.++. ++...+..|.++++|+.+++..| .++.+|...+-..||+.|+|.+|.|.++- +++.-++.|
T Consensus 79 ~t~~LdlsnNk------l~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNK------LSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ceeeeeccccc------cccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 34567777665 55566677788888888888888 78888877777778888888888887663 457778888
Q ss_pred cEEecCCCcccccccc-ccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCceeeCCCCCcccccccCcccCCCceE
Q 044195 643 HTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLE 720 (1024)
Q Consensus 643 ~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~ 720 (1024)
+.|||+.| .+.++|. .+..-.++++|++++|. ++.+-.+ |..+.+|.+|.
T Consensus 152 rslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlk-------------------------- 203 (873)
T KOG4194|consen 152 RSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLK-------------------------- 203 (873)
T ss_pred hhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeee--------------------------
Confidence 88888887 7777764 46667788888888887 6665432 33344443331
Q ss_pred eccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcc
Q 044195 721 ISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIW 800 (1024)
Q Consensus 721 i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 800 (1024)
+...... ......++++++|+.|+|..|.+.. ...-.+..+++|+.|.+..|...++...
T Consensus 204 LsrNrit----tLp~r~Fk~L~~L~~LdLnrN~iri----------------ve~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 204 LSRNRIT----TLPQRSFKRLPKLESLDLNRNRIRI----------------VEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred cccCccc----ccCHHHhhhcchhhhhhccccceee----------------ehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 1111100 0112346778888888888877521 1234567788889999988888777655
Q ss_pred cCCCCCCCceEEEEecCCCCCC-CCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccc
Q 044195 801 LGDFPFSKLVSLKFEYCGMCTS-LPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPR 879 (1024)
Q Consensus 801 ~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 879 (1024)
.+- .+.+++.|+|+.|..... -.++-.+..|+.|+++.| .+..+..+... .+++|+.|+++. +.+......
T Consensus 264 ~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws-----ftqkL~~LdLs~-N~i~~l~~~ 335 (873)
T KOG4194|consen 264 AFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS-----FTQKLKELDLSS-NRITRLDEG 335 (873)
T ss_pred cee-eecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhh-----hcccceeEeccc-cccccCChh
Confidence 432 378888999988864332 226777888888888875 34444222111 145555555554 333333332
Q ss_pred cccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCcCEEEEccCCCcc-----ccCCCCC
Q 044195 880 GFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVV-----FSSPIDF 954 (1024)
Q Consensus 880 ~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~-----~~~~~~l 954 (1024)
.+.. +..|+.|++++| .++ .+.+ ..+..+++|+.|++++|..-- ..+...+
T Consensus 336 sf~~-----L~~Le~LnLs~N-si~-~l~e-----------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 336 SFRV-----LSQLEELNLSHN-SID-HLAE-----------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred HHHH-----HHHhhhhccccc-chH-HHHh-----------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 2222 455555555555 333 2221 234445556666665554111 1122346
Q ss_pred CCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeee
Q 044195 955 SSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHIS 1016 (1024)
Q Consensus 955 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~ 1016 (1024)
++|+.|.+.+ +++.+++...+.++++|+.|++.++ .+.++- |..|..+ .|++|.++
T Consensus 392 ~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq---~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 392 PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQ---PNAFEPM-ELKELVMN 447 (873)
T ss_pred hhhhheeecC-ceeeecchhhhccCcccceecCCCC-cceeec---ccccccc-hhhhhhhc
Confidence 6666666665 4566666666666667777766666 333331 4455555 66666554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=5.5e-24 Score=226.52 Aligned_cols=363 Identities=20% Similarity=0.204 Sum_probs=215.6
Q ss_pred ceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCC
Q 044195 539 SLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKH 618 (1024)
Q Consensus 539 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 618 (1024)
-+|-+.+.++++.....+.....|++++.|.+.... -...++.++.+.+|..|.+++| .+.++...++.|+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-------L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-------LEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPR 79 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhh-------hhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchh
Confidence 355666666666655556666777888887775442 1344566666777777777777 56666666666677
Q ss_pred CcEeeccCCCcc--ccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCc
Q 044195 619 LRFLNLSRTNIQ--ILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCR 695 (1024)
Q Consensus 619 L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 695 (1024)
||.+.++.|+++ .+|..|.+|..|.+||||+| .+++.|.++..-+++-.|++++|. +..+|.. +.+|+.|-.|+.
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc
Confidence 777777766665 46666667777777777776 666666666666667777777666 6666654 334444444432
Q ss_pred eeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHh
Q 044195 696 FVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVL 775 (1024)
Q Consensus 696 ~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 775 (1024)
..+.. ...+.....|..|+ +|.+++.... ......+..+.+|+.|++++... ....++
T Consensus 158 S~NrL--e~LPPQ~RRL~~Lq-tL~Ls~NPL~----hfQLrQLPsmtsL~vLhms~TqR---------------Tl~N~P 215 (1255)
T KOG0444|consen 158 SNNRL--EMLPPQIRRLSMLQ-TLKLSNNPLN----HFQLRQLPSMTSLSVLHMSNTQR---------------TLDNIP 215 (1255)
T ss_pred ccchh--hhcCHHHHHHhhhh-hhhcCCChhh----HHHHhcCccchhhhhhhcccccc---------------hhhcCC
Confidence 22111 12233344444444 3333221110 00111234455566666665543 133445
Q ss_pred hccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCC
Q 044195 776 DMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSC 855 (1024)
Q Consensus 776 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 855 (1024)
..+..+.+|..++++.|+...+|..+.. +++|+.|+|++|...+.--..+.+.+|+.|++++| .+..+|...+
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~vPecly~--l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avc---- 288 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPIVPECLYK--LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVC---- 288 (1255)
T ss_pred CchhhhhhhhhccccccCCCcchHHHhh--hhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHh----
Confidence 5666677777788887777777777765 77788888887764433335566777778887775 3444444432
Q ss_pred CCCCCCcceeeccccccccc-cccccccccccccCcccceeeeccCcCCcccCCCC---CCCccEEEEeccc--CccccC
Q 044195 856 SAPFPSLETLCFVNMQEWEE-WIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPER---LLLLEKLVIQSCK--QLLVTI 929 (1024)
Q Consensus 856 ~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~---l~~L~~L~l~~c~--~l~~~l 929 (1024)
.+++|+.|.+.+. .+.- -.+++ .+. +.+|+.+...+| +|. .+|++ ++.|+.|.++.+. .+|..+
T Consensus 289 --KL~kL~kLy~n~N-kL~FeGiPSG-IGK----L~~Levf~aanN-~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 289 --KLTKLTKLYANNN-KLTFEGIPSG-IGK----LIQLEVFHAANN-KLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred --hhHHHHHHHhccC-cccccCCccc-hhh----hhhhHHHHhhcc-ccc-cCchhhhhhHHHHHhcccccceeechhhh
Confidence 2666776666552 2221 12222 222 677777777776 676 67743 4667777776665 346677
Q ss_pred CCCCCcCEEEEccCCCccccC
Q 044195 930 QCLPALSELQIRGCRRVVFSS 950 (1024)
Q Consensus 930 ~~l~~L~~L~l~~~~~l~~~~ 950 (1024)
+-++.|+.|++.+|+++.-.|
T Consensus 359 HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhcCCcceeeccCCcCccCCC
Confidence 777777777777777665443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=7.6e-23 Score=216.92 Aligned_cols=335 Identities=20% Similarity=0.217 Sum_probs=237.2
Q ss_pred ceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccc-cccCCCCcccEEec
Q 044195 594 RLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLC-KDMGNLTKLHHLRN 671 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l 671 (1024)
.-+.||+++| .+.++ +..|.++++|+.++|.+|.++.+|.......+|+.|+|.+| .+.++. +.+..++.|+.||+
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhh
Confidence 3456888888 56665 35567888888888888888888877777777888888887 554443 34667777788887
Q ss_pred cCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEe
Q 044195 672 SNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRW 751 (1024)
Q Consensus 672 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 751 (1024)
+.|. +..+|.. .+....++++|+|++
T Consensus 157 SrN~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 157 SRNL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLAS 182 (873)
T ss_pred hhch-hhcccCC-----------------------------------------------------CCCCCCCceEEeecc
Confidence 7776 5554421 122234677777777
Q ss_pred cCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCC-CCCCCCCC
Q 044195 752 CNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTS-LPSVGQLP 830 (1024)
Q Consensus 752 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~ 830 (1024)
|.++. .....+..+.+|..|.|+.|.++++|...+. .+++|+.|+|..|..-.. ...+..+|
T Consensus 183 N~It~----------------l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 183 NRITT----------------LETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred ccccc----------------cccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCch
Confidence 76632 2234455667888999999999999876653 488999999988863221 33678899
Q ss_pred CCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC--
Q 044195 831 VLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP-- 908 (1024)
Q Consensus 831 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp-- 908 (1024)
+|+.|.+..|.--+--...|++ +.++++|++.. +++......++-+ +..|+.|++++| .+...-+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~------l~kme~l~L~~-N~l~~vn~g~lfg-----Lt~L~~L~lS~N-aI~rih~d~ 312 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYG------LEKMEHLNLET-NRLQAVNEGWLFG-----LTSLEQLDLSYN-AIQRIHIDS 312 (873)
T ss_pred hhhhhhhhhcCcccccCcceee------ecccceeeccc-chhhhhhcccccc-----cchhhhhccchh-hhheeecch
Confidence 9999999886433322334444 78899999886 4555444443333 899999999998 5552223
Q ss_pred -CCCCCccEEEEeccc--Cc-cccCCCCCCcCEEEEccCCCccccCC---CCCCCccEEEEcCCCCcccc--hhhhcCCC
Q 044195 909 -ERLLLLEKLVIQSCK--QL-LVTIQCLPALSELQIRGCRRVVFSSP---IDFSSLKSVFLGDIANQVVL--AALFEQGL 979 (1024)
Q Consensus 909 -~~l~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l--~~~~l~~l 979 (1024)
+..++|+.|+++++. .+ +..+..+..|++|.+++|+ +..+.. ..+.+|++|++.++..--.+ ....+.++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 467899999999885 33 3567778999999999998 554443 45669999999875432222 23457889
Q ss_pred CCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 980 PQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 980 ~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
++|+.|.+.++ ++++++. ..|..+++|++|++.+++
T Consensus 392 ~~LrkL~l~gN-qlk~I~k---rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 392 PSLRKLRLTGN-QLKSIPK---RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhheeecCc-eeeecch---hhhccCcccceecCCCCc
Confidence 99999999998 8999953 489999999999999875
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-22 Score=227.63 Aligned_cols=111 Identities=25% Similarity=0.285 Sum_probs=69.1
Q ss_pred cccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcc
Q 044195 556 FDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQS 635 (1024)
Q Consensus 556 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 635 (1024)
+++..+.-+|++|.+.++.- ...+..+..+.+|+.|+++.| .+.+.|.+++++.+|++|+|.+|.+..+|.+
T Consensus 38 l~~~~~~v~L~~l~lsnn~~-------~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQI-------SSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS 109 (1081)
T ss_pred hHHhhheeeeEEeecccccc-------ccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchh
Confidence 33444444566666666541 233444556666666666666 5666666666666777777766666666666
Q ss_pred cccCCCCcEEecCCCccccccccccCCCCcccEEeccCCc
Q 044195 636 INSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 636 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 675 (1024)
+..+++|+.|+++.| ....+|.-+..+..+..+..++|.
T Consensus 110 ~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred HHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcch
Confidence 666777777777666 555666666666666666666663
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.9e-22 Score=214.94 Aligned_cols=359 Identities=18% Similarity=0.204 Sum_probs=250.7
Q ss_pred CCCceEEEEeCCCCCc-ccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEE
Q 044195 591 DLPRLRVFSLCGYCNI-IDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHL 669 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 669 (1024)
-++-.|-.|+++|..- ..+|..+..|+.++.|.|..+++..+|+.++.|.+|++|.+++| .+..+...+..|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3566778899999433 45899999999999999999999999999999999999999998 677777778899999999
Q ss_pred eccCCc-cccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 670 RNSNVH-SLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 670 ~l~~~~-~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
.+..|. +-..+|..|..|..|..|+...+. |+ ..+..+..-+++-.|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNq---------------L~----------------EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ---------------LR----------------EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhh---------------hh----------------hcchhhhhhcCcEEEE
Confidence 998876 123588888888888777432211 11 1223344556777788
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCC-CCCCCC
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCT-SLPSVG 827 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~~l~ 827 (1024)
|++|++..+++ +.+.++..|-.|++++|....+|..+.. +.+|+.|.|++|+... .+..+.
T Consensus 133 LS~N~IetIPn----------------~lfinLtDLLfLDLS~NrLe~LPPQ~RR--L~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 133 LSYNNIETIPN----------------SLFINLTDLLFLDLSNNRLEMLPPQIRR--LSMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred cccCccccCCc----------------hHHHhhHhHhhhccccchhhhcCHHHHH--HhhhhhhhcCCChhhHHHHhcCc
Confidence 88877644332 2233456677788888888888877765 7788888888887432 122344
Q ss_pred CCCCCceeeecCCCCc-eEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCccc
Q 044195 828 QLPVLKHLEMRGMDRV-KSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGT 906 (1024)
Q Consensus 828 ~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 906 (1024)
.|.+|+.|++++.... ..+|.. ...+.+|..++++. +++..... +...+++|+.|++++| +++ .
T Consensus 195 smtsL~vLhms~TqRTl~N~Pts------ld~l~NL~dvDlS~-N~Lp~vPe------cly~l~~LrrLNLS~N-~it-e 259 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTS------LDDLHNLRDVDLSE-NNLPIVPE------CLYKLRNLRRLNLSGN-KIT-E 259 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCc------hhhhhhhhhccccc-cCCCcchH------HHhhhhhhheeccCcC-cee-e
Confidence 5566667777664332 222222 22366777777765 22222111 1112788888888887 565 4
Q ss_pred CC---CCCCCccEEEEeccc--CccccCCCCCCcCEEEEccCCCcc--ccC--CCCCCCccEEEEcCCCCcccchhhhcC
Q 044195 907 LP---ERLLLLEKLVIQSCK--QLLVTIQCLPALSELQIRGCRRVV--FSS--PIDFSSLKSVFLGDIANQVVLAALFEQ 977 (1024)
Q Consensus 907 lp---~~l~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~--~~~--~~~l~~L~~L~l~~c~~l~~l~~~~l~ 977 (1024)
+. ....+|++|+++.+. .+|..+..++.|+.|.+.+|. ++ .+| ++.+..|+.++..+ +.++-+|. .+.
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aan-N~LElVPE-glc 336 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE-GLC 336 (1255)
T ss_pred eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhc-cccccCch-hhh
Confidence 43 345788888888774 567788888888888887776 43 222 35677888888875 56776775 566
Q ss_pred CCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCCCCc
Q 044195 978 GLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCPQLI 1022 (1024)
Q Consensus 978 ~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~~L~ 1022 (1024)
.|+.|+.|.++.+ .|-++ |+++..++-|+.|++.++|+|.
T Consensus 337 RC~kL~kL~L~~N-rLiTL----PeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN-RLITL----PEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhHHHHHhccccc-ceeec----hhhhhhcCCcceeeccCCcCcc
Confidence 7889999998766 66677 8889999999999999998874
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=5.9e-22 Score=201.27 Aligned_cols=385 Identities=23% Similarity=0.266 Sum_probs=263.1
Q ss_pred cccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccc
Q 044195 558 FIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSIN 637 (1024)
Q Consensus 558 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~ 637 (1024)
.+.....+..+....+. -...++.+..+..|+.|+.++| .+.++|++++.+..|..|+..+|++.++|.+++
T Consensus 86 aig~l~~l~~l~vs~n~-------ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~ 157 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNK-------LSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMV 157 (565)
T ss_pred HHHHHHHHHHhhcccch-------HhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHH
Confidence 33444555555555442 1456777788889999999998 788899999999999999999999999999999
Q ss_pred cCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCC
Q 044195 638 SLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 638 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
++.+|..|++.+| .++.+|+..-+++.|++||...|- ++.+|+++|.+.+|..|+.-.+. ...+.+++.+..|.
T Consensus 158 ~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk---i~~lPef~gcs~L~- 231 (565)
T KOG0472|consen 158 NLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK---IRFLPEFPGCSLLK- 231 (565)
T ss_pred HHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc---cccCCCCCccHHHH-
Confidence 9999999999997 788888776679999999988887 88999999988888877543332 22333555555444
Q ss_pred ceEeccCCCCCCcccchhh-hcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC
Q 044195 718 TLEISSLENVKCVGDAIEA-QLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK 796 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 796 (1024)
.++... +....+++ .++.++++..|++..|.. ...++.++.+.+|++|++++|.+..
T Consensus 232 Elh~g~-----N~i~~lpae~~~~L~~l~vLDLRdNkl-----------------ke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 232 ELHVGE-----NQIEMLPAEHLKHLNSLLVLDLRDNKL-----------------KEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred HHHhcc-----cHHHhhHHHHhcccccceeeecccccc-----------------ccCchHHHHhhhhhhhcccCCcccc
Confidence 443322 11222333 345788889999988875 3456667788899999999999999
Q ss_pred CCcccCCCCCCCceEEEEecCCCCC------------------------------------------CCCCCCCCCCCce
Q 044195 797 FPIWLGDFPFSKLVSLKFEYCGMCT------------------------------------------SLPSVGQLPVLKH 834 (1024)
Q Consensus 797 ~p~~~~~~~l~~L~~L~L~~~~~~~------------------------------------------~l~~l~~l~~L~~ 834 (1024)
+|..++. + .|+.|-+.+|+.-+ ..|....+-+.+.
T Consensus 290 Lp~sLgn--l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 290 LPYSLGN--L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred CCccccc--c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 9988875 5 78888888776210 0011123446677
Q ss_pred eeecCCCCceEeccccccCC-----CCCCC--------C----Cccee--eccccccccccccccccccccccCccccee
Q 044195 835 LEMRGMDRVKSVGLEFYGNS-----CSAPF--------P----SLETL--CFVNMQEWEEWIPRGFAQEVNEVFPKLRKL 895 (1024)
Q Consensus 835 L~L~~~~~l~~~~~~~~~~~-----~~~~~--------~----~L~~L--~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L 895 (1024)
|++++ ..++.+|.+.+... ....| | .++++ .+.--++..+|.+..+.. +++|..|
T Consensus 367 L~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~-----l~kLt~L 440 (565)
T KOG0472|consen 367 LDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ-----LQKLTFL 440 (565)
T ss_pred hcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh-----hhcceee
Confidence 77766 34566665543220 01111 1 11111 000112333444433333 8999999
Q ss_pred eeccCcCCcccCC---CCCCCccEEEEeccc--CccccCCCCCCcCEEEEccCCCccccCC---CCCCCccEEEEcCCCC
Q 044195 896 SLLRCSKLQGTLP---ERLLLLEKLVIQSCK--QLLVTIQCLPALSELQIRGCRRVVFSSP---IDFSSLKSVFLGDIAN 967 (1024)
Q Consensus 896 ~l~~c~~L~~~lp---~~l~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~ 967 (1024)
++++| -|. .+| ..+..|+.|+++.+. .+|..+..+..|+.+-.+++. +...+. ..+.+|..|++.+ +.
T Consensus 441 ~L~NN-~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~n-Nd 516 (565)
T KOG0472|consen 441 DLSNN-LLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQN-ND 516 (565)
T ss_pred ecccc-hhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCC-Cc
Confidence 99998 566 788 467789999999884 556666656666666666565 665554 4566888889886 56
Q ss_pred cccchhhhcCCCCCCCEEeeecCCC
Q 044195 968 QVVLAALFEQGLPQLESLKIDSVRA 992 (1024)
Q Consensus 968 l~~l~~~~l~~l~~L~~L~l~~c~~ 992 (1024)
+..+|. .+++|++|++|+++++|.
T Consensus 517 lq~IPp-~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 517 LQQIPP-ILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhCCh-hhccccceeEEEecCCcc
Confidence 777886 578999999999999954
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1e-19 Score=204.33 Aligned_cols=400 Identities=22% Similarity=0.229 Sum_probs=266.3
Q ss_pred hhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcc
Q 044195 587 QLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKL 666 (1024)
Q Consensus 587 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 666 (1024)
+...+.-+|+.|||++| .+..+|..+..+.+|+.|+++.|.|.+.|.++.++.+|++|+|.+| .+..+|.++..+++|
T Consensus 39 ~~~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNL 116 (1081)
T ss_pred HHhhheeeeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcc
Confidence 33445556999999999 7999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cEEeccCCccccccCccCCCCCCCCccCceeeCC------------------CCCcccccccCcccCCCceEeccCCCCC
Q 044195 667 HHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGK------------------DSGSALRELKSLTNLQGTLEISSLENVK 728 (1024)
Q Consensus 667 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~------------------~~~~~~~~l~~L~~L~~~L~i~~l~~~~ 728 (1024)
+.|++++|. ...+|..+..++.+..+...++.. .....+.+...++. .+.+....
T Consensus 117 ~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~---~ldLr~N~--- 189 (1081)
T KOG0618|consen 117 QYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH---QLDLRYNE--- 189 (1081)
T ss_pred cccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe---eeecccch---
Confidence 999999998 778887766665555543222200 00111111111111 01111100
Q ss_pred CcccchhhhcCCCCCCCcEEEEecCCCCc----cccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCC
Q 044195 729 CVGDAIEAQLNRKVNLEALVLRWCNRSCI----SNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDF 804 (1024)
Q Consensus 729 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 804 (1024)
.. ...+..+.+|+.|+...+....+ +.++.+........ ....-..+.+|++++++.+++..+|+|+..
T Consensus 190 --~~--~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~n~l~~lp~wi~~- 262 (1081)
T KOG0618|consen 190 --ME--VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISHNNLSNLPEWIGA- 262 (1081)
T ss_pred --hh--hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce--eeccccccccceeeecchhhhhcchHHHHh-
Confidence 00 12233444444444433332110 11111111111111 111223356899999999999999999986
Q ss_pred CCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccccccccc--
Q 044195 805 PFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFA-- 882 (1024)
Q Consensus 805 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-- 882 (1024)
+.+|+.|.+.+|.....+..+..+.+|+.|.+..| .++.++... ..+.+|++|++.. +++.......+.
T Consensus 263 -~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~l------e~~~sL~tLdL~~-N~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 263 -CANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFL------EGLKSLRTLDLQS-NNLPSLPDNFLAVL 333 (1081)
T ss_pred -cccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcc------cccceeeeeeehh-ccccccchHHHhhh
Confidence 89999999999986433336667888999988876 466665432 3378899999876 233322211100
Q ss_pred ------------------ccccccCcccceeeeccCcCCcc-cCC--CCCCCccEEEEecc--cCcc-ccCCCCCCcCEE
Q 044195 883 ------------------QEVNEVFPKLRKLSLLRCSKLQG-TLP--ERLLLLEKLVIQSC--KQLL-VTIQCLPALSEL 938 (1024)
Q Consensus 883 ------------------~~~~~~~~~L~~L~l~~c~~L~~-~lp--~~l~~L~~L~l~~c--~~l~-~~l~~l~~L~~L 938 (1024)
......++.|+.|.+.+| .|++ .+| .++..|+.|+++++ ..+| ..+.+++.|++|
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence 001234667888888887 5654 344 57789999999988 4555 457788999999
Q ss_pred EEccCCCccccCC--CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCC-CCCCEEee
Q 044195 939 QIRGCRRVVFSSP--IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDI-RSLNRLHI 1015 (1024)
Q Consensus 939 ~l~~~~~l~~~~~--~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l-~~L~~L~l 1015 (1024)
++++|. ++.+|. ..++.|++|...+ +.+..+| .+..++.|+.++++.+ +|+.+... + ... ++||.|++
T Consensus 413 ~LSGNk-L~~Lp~tva~~~~L~tL~ahs-N~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~--~--~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 413 NLSGNK-LTTLPDTVANLGRLHTLRAHS-NQLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLP--E--ALPSPNLKYLDL 483 (1081)
T ss_pred hcccch-hhhhhHHHHhhhhhHHHhhcC-Cceeech--hhhhcCcceEEecccc-hhhhhhhh--h--hCCCcccceeec
Confidence 999998 666654 4567888888776 5566677 3668899999999866 66655221 1 222 79999999
Q ss_pred eCCCCC
Q 044195 1016 SRCPQL 1021 (1024)
Q Consensus 1016 ~~c~~L 1021 (1024)
+|++.+
T Consensus 484 SGN~~l 489 (1081)
T KOG0618|consen 484 SGNTRL 489 (1081)
T ss_pred cCCccc
Confidence 999865
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=4.1e-14 Score=165.74 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=101.4
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccccccccccccc
Q 044195 807 SKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVN 886 (1024)
Q Consensus 807 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 886 (1024)
++|+.|++++|.. ..+|.+ .++|+.|++++|. ++.++. ..++|+.|++++ +++..+...
T Consensus 302 ~~L~~LdLS~N~L-~~Lp~l--p~~L~~L~Ls~N~-L~~LP~---------lp~~Lq~LdLS~-N~Ls~LP~l------- 360 (788)
T PRK15387 302 PGLQELSVSDNQL-ASLPAL--PSELCKLWAYNNQ-LTSLPT---------LPSGLQELSVSD-NQLASLPTL------- 360 (788)
T ss_pred cccceeECCCCcc-ccCCCC--cccccccccccCc-cccccc---------cccccceEecCC-CccCCCCCC-------
Confidence 4566666766643 333322 2356677776653 333321 124688888876 445543221
Q ss_pred ccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCC-CCCCcCEEEEccCCCccccCCCCCCCccEEEEcCC
Q 044195 887 EVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQ-CLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDI 965 (1024)
Q Consensus 887 ~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~-~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c 965 (1024)
.++|+.|++++| .++ .+|....+|+.|++++|..- .++ ..++|+.|++++|. +..+|. .+.+|+.|++++
T Consensus 361 --p~~L~~L~Ls~N-~L~-~LP~l~~~L~~LdLs~N~Lt--~LP~l~s~L~~LdLS~N~-LssIP~-l~~~L~~L~Ls~- 431 (788)
T PRK15387 361 --PSELYKLWAYNN-RLT-SLPALPSGLKELIVSGNRLT--SLPVLPSELKELMVSGNR-LTSLPM-LPSGLLSLSVYR- 431 (788)
T ss_pred --Ccccceehhhcc-ccc-cCcccccccceEEecCCccc--CCCCcccCCCEEEccCCc-CCCCCc-chhhhhhhhhcc-
Confidence 567888999887 787 68877778999999887522 121 23578899999887 555543 345788888887
Q ss_pred CCcccchhhhcCCCCCCCEEeeecCCCCCc
Q 044195 966 ANQVVLAALFEQGLPQLESLKIDSVRAPTY 995 (1024)
Q Consensus 966 ~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 995 (1024)
+.++.+|. .+.++++|+.|++++|+--..
T Consensus 432 NqLt~LP~-sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 432 NQLTRLPE-SLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CcccccCh-HHhhccCCCeEECCCCCCCch
Confidence 45677775 356788999999988854333
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=3.9e-14 Score=165.92 Aligned_cols=254 Identities=19% Similarity=0.134 Sum_probs=154.9
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
..-.+|+|+.+ .+..+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 45678899988 7888888775 4899999999999988863 578899999988 77778753 4678888888
Q ss_pred CCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEec
Q 044195 673 NVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWC 752 (1024)
Q Consensus 673 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 752 (1024)
+|. +..+|... .+|+.|....+ ++. . ++. ..++|+.|++++|
T Consensus 271 ~N~-L~~Lp~lp---~~L~~L~Ls~N---------------~Lt---------~-------LP~---~p~~L~~LdLS~N 312 (788)
T PRK15387 271 SNP-LTHLPALP---SGLCKLWIFGN---------------QLT---------S-------LPV---LPPGLQELSVSDN 312 (788)
T ss_pred CCc-hhhhhhch---hhcCEEECcCC---------------ccc---------c-------ccc---cccccceeECCCC
Confidence 887 77776532 23333321110 000 0 000 1245777777766
Q ss_pred CCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCC
Q 044195 753 NRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVL 832 (1024)
Q Consensus 753 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 832 (1024)
....++ . .+++|+.|.+++|....+|.. ..+|+.|+|++|.. ..+|.+ .++|
T Consensus 313 ~L~~Lp------------------~--lp~~L~~L~Ls~N~L~~LP~l-----p~~Lq~LdLS~N~L-s~LP~l--p~~L 364 (788)
T PRK15387 313 QLASLP------------------A--LPSELCKLWAYNNQLTSLPTL-----PSGLQELSVSDNQL-ASLPTL--PSEL 364 (788)
T ss_pred ccccCC------------------C--CcccccccccccCcccccccc-----ccccceEecCCCcc-CCCCCC--Cccc
Confidence 542111 0 123566777777777666642 24677777777653 344432 2466
Q ss_pred ceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCC
Q 044195 833 KHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLL 912 (1024)
Q Consensus 833 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~ 912 (1024)
+.|++++|. +..++. ..++|+.|+++++ .+..+... +++|+.|++++| .++ .+|..+.
T Consensus 365 ~~L~Ls~N~-L~~LP~---------l~~~L~~LdLs~N-~Lt~LP~l---------~s~L~~LdLS~N-~Ls-sIP~l~~ 422 (788)
T PRK15387 365 YKLWAYNNR-LTSLPA---------LPSGLKELIVSGN-RLTSLPVL---------PSELKELMVSGN-RLT-SLPMLPS 422 (788)
T ss_pred ceehhhccc-cccCcc---------cccccceEEecCC-cccCCCCc---------ccCCCEEEccCC-cCC-CCCcchh
Confidence 677776542 333321 1345666666653 33332211 456777777777 566 5665555
Q ss_pred CccEEEEeccc--CccccCCCCCCcCEEEEccCC
Q 044195 913 LLEKLVIQSCK--QLLVTIQCLPALSELQIRGCR 944 (1024)
Q Consensus 913 ~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~ 944 (1024)
+|+.|++++|. .+|..+..+++|+.|++++|+
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 66777776653 455666667777777777776
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2e-13 Score=161.34 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=61.4
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
.+...|+++++ .++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 45778888888 6888887664 478899999998888887664 58888888887 6777776553 468888888
Q ss_pred CCccccccCc
Q 044195 673 NVHSLEEMPK 682 (1024)
Q Consensus 673 ~~~~l~~~p~ 682 (1024)
+|. +..+|.
T Consensus 250 ~N~-L~~LP~ 258 (754)
T PRK15370 250 INR-ITELPE 258 (754)
T ss_pred CCc-cCcCCh
Confidence 876 555554
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=4.3e-12 Score=160.95 Aligned_cols=292 Identities=16% Similarity=0.166 Sum_probs=180.4
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i 259 (1024)
..+|-|+.-.+ .|... ...+++.|+|++|.||||++.++... ++.++|+++.. +.+...+...+
T Consensus 14 ~~~~~R~rl~~----~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLA----KLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHH----HHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34677775444 44322 35689999999999999999998851 23689999964 45666777777
Q ss_pred HHhccCCCCC-------------CCcHHHHHHHHHHHhC--CCceeEEeeccCCCCHHHHH-HhhcCCCCCCCCcEEEEE
Q 044195 260 LKSITNDQSK-------------DDDLNWVQEKLKKQLS--GKKFLLVLDDVWNENYEYWS-IFSRPFGAGAPGSKIVVT 323 (1024)
Q Consensus 260 l~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDd~~~~~~~~~~-~l~~~~~~~~~gs~ilvT 323 (1024)
+..+...... ..+...+...+...+. +.+++|||||++..+..... .+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7776421111 0122233333333332 68999999999765433333 332222333356789899
Q ss_pred cCCchhhh--cc-CCccceecC----CCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcC
Q 044195 324 TRNLRVTV--NM-GADQAYQLK----ELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRG 396 (1024)
Q Consensus 324 tR~~~~~~--~~-~~~~~~~l~----~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 396 (1024)
||...... .. .......+. +|+.+|+.++|....... -..+.+..|.+.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99742211 11 112344555 999999999997653211 12356778999999999999999887755
Q ss_pred CCChhHHHHHHhccccCCCC-CCCChhhHHHhh-hcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCc
Q 044195 397 KHDPRDWEFVLNNDICNLPE-ENCNIIPALGVS-CHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGR 474 (1024)
Q Consensus 397 ~~~~~~w~~~l~~~~~~~~~-~~~~~~~~l~~s-y~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~ 474 (1024)
..... ..... .+.. ....+...+.-. |+.||++.+..++..|+++ .++.+..-. +..
T Consensus 232 ~~~~~--~~~~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~------ 290 (903)
T PRK04841 232 NNSSL--HDSAR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTG------ 290 (903)
T ss_pred CCCch--hhhhH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcC------
Confidence 42210 01111 1111 112355544433 7899999999999999986 334332221 111
Q ss_pred cHHHHHHHHHHHHHhcCCccc-cCCCCCcEEEchhHHHHHHHHh
Q 044195 475 KMEDLGREFVQELLSRSFFQR-SSKNASRFLMHDLINDLARWAA 517 (1024)
Q Consensus 475 ~~~~~~~~~~~~Lv~~~l~~~-~~~~~~~~~~Hdli~~~~~~~~ 517 (1024)
.+.+.+.+++|.+.+++.. .+.+...|..|++++++++...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1124678999999999754 3323457889999999998765
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-14 Score=148.25 Aligned_cols=383 Identities=16% Similarity=0.173 Sum_probs=187.2
Q ss_pred ceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCccccccccc-cCCCCcccEEe
Q 044195 594 RLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLR 670 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 670 (1024)
.-..++|..| .|..+| ..|+.+++||.|||++|.|+.+ |..|..|.+|..|-+.++..++.+|.+ |++|..|+.|.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3455666666 566666 4566677777777777777655 566666777766666664467777654 56677777776
Q ss_pred ccCCccccccCcc-CCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCc---
Q 044195 671 NSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEA--- 746 (1024)
Q Consensus 671 l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~--- 746 (1024)
+.-|+ +..++.. +..|++|..|+.+.+...... -..+..+..++ .+....... ....+++.+..
T Consensus 147 lNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~-tlhlA~np~---------icdCnL~wla~~~a 214 (498)
T KOG4237|consen 147 LNANH-INCIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIK-TLHLAQNPF---------ICDCNLPWLADDLA 214 (498)
T ss_pred cChhh-hcchhHHHHHHhhhcchhcccchhhhhhc-cccccchhccc-hHhhhcCcc---------ccccccchhhhHHh
Confidence 66665 4444433 455555555544433221100 00111111111 111100000 00111111110
Q ss_pred ---EEEEecCCCCcccccccccc-chhhHHHHhhccCCCCCcc-EEEEEecCCCCCCc-ccCCCCCCCceEEEEecCCCC
Q 044195 747 ---LVLRWCNRSCISNIRNEDAV-DLETQTRVLDMLKPHQKLE-ELTITGYGGTKFPI-WLGDFPFSKLVSLKFEYCGMC 820 (1024)
Q Consensus 747 ---L~l~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~ 820 (1024)
...+|-. +.......... .......+... ..++. .+.-..+.....|. .+. .+++|+.|++++|+..
T Consensus 215 ~~~ietsgar--c~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~--~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 215 MNPIETSGAR--CVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFK--KLPNLRKLNLSNNKIT 287 (498)
T ss_pred hchhhcccce--ecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHh--hcccceEeccCCCccc
Confidence 0111110 00000000000 00000011111 01110 01111111122221 122 3889999999998855
Q ss_pred CCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeecc
Q 044195 821 TSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLR 899 (1024)
Q Consensus 821 ~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 899 (1024)
..-+ ++..+..++.|.|..| +++.+....+ ..+..|+.|++++ ++++...+..+.. +..|.+|++-.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f-----~~ls~L~tL~L~~-N~it~~~~~aF~~-----~~~l~~l~l~~ 355 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRN-KLEFVSSGMF-----QGLSGLKTLSLYD-NQITTVAPGAFQT-----LFSLSTLNLLS 355 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcc-hHHHHHHHhh-----hccccceeeeecC-CeeEEEecccccc-----cceeeeeehcc
Confidence 4333 7788888999999875 4444433332 2377888899888 5566555544333 56788888877
Q ss_pred CcCCc-----------------ccCC-CCCCCccEEEEecccC------c---------cccCCCCCCcCEEEEccCCCc
Q 044195 900 CSKLQ-----------------GTLP-ERLLLLEKLVIQSCKQ------L---------LVTIQCLPALSELQIRGCRRV 946 (1024)
Q Consensus 900 c~~L~-----------------~~lp-~~l~~L~~L~l~~c~~------l---------~~~l~~l~~L~~L~l~~~~~l 946 (1024)
||..- |..| .....++.+.+++... - +..-+.++-+.+..=..+..+
T Consensus 356 Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l 435 (498)
T KOG4237|consen 356 NPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL 435 (498)
T ss_pred CcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch
Confidence 65321 1112 2234455666654311 0 111122333332221122234
Q ss_pred cccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeC
Q 044195 947 VFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISR 1017 (1024)
Q Consensus 947 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~ 1017 (1024)
+.+|.+.-..-.+|++.+ +.++.+|.. .+.+| .++++++ .+..+. -..|.++++|..|.|+.
T Consensus 436 k~lp~~iP~d~telyl~g-n~~~~vp~~---~~~~l-~~dls~n-~i~~Ls---n~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 436 KLLPRGIPVDVTELYLDG-NAITSVPDE---LLRSL-LLDLSNN-RISSLS---NYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhcCCCCCchhHHHhccc-chhcccCHH---HHhhh-hcccccC-ceehhh---cccccchhhhheeEEec
Confidence 444444434667778876 556777765 45667 7888877 444443 23788888998888875
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=7.4e-13 Score=159.02 Aligned_cols=130 Identities=25% Similarity=0.297 Sum_probs=98.6
Q ss_pred cCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCC-cccCCc-cccCCCCCcEeeccCCC-ccccCccc
Q 044195 560 RGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCN-IIDLPN-EIGNLKHLRFLNLSRTN-IQILPQSI 636 (1024)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~-l~~lp~-~l~~l~~L~~L~L~~~~-i~~lp~~i 636 (1024)
......|...+.++. ......-..++.|++|-+..|.. +..++. .|..++.|++|||++|. +.++|++|
T Consensus 520 ~~~~~~rr~s~~~~~--------~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK--------IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cchhheeEEEEeccc--------hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 344556666665553 11112224566799999998842 566653 47889999999999764 77999999
Q ss_pred ccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceee
Q 044195 637 NSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVV 698 (1024)
Q Consensus 637 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 698 (1024)
++|.+|++|+++++ .++.+|.++++|++|.+|++..+..+..+|..+..|.+|++|..+..
T Consensus 592 ~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 592 GELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999999999997 89999999999999999999988866666665666888988865544
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=2.5e-10 Score=129.50 Aligned_cols=302 Identities=14% Similarity=0.072 Sum_probs=177.1
Q ss_pred ccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.+..++||++++++|...+.... .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 34569999999999999986542 1234456889999999999999999984332221234667777777788889999
Q ss_pred HHHhccCCC--CCCCcHHHHHHHHHHHhC--CCceeEEeeccCCCC----HHHHHHhhcCCCCCC-CCcEEEEEcCCchh
Q 044195 259 ILKSITNDQ--SKDDDLNWVQEKLKKQLS--GKKFLLVLDDVWNEN----YEYWSIFSRPFGAGA-PGSKIVVTTRNLRV 329 (1024)
Q Consensus 259 il~~l~~~~--~~~~~~~~~~~~l~~~l~--~~~~LlVlDd~~~~~----~~~~~~l~~~~~~~~-~gs~ilvTtR~~~~ 329 (1024)
++.++.... .......++...+.+.+. +++.+||||+++.-. .+.+..+...+.... .+..+|.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 999987522 123345666677777764 456899999996522 223333333222211 12235666665433
Q ss_pred hhccC-------CccceecCCCChHhHHHHHHhhhcCC--CCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhh--c---
Q 044195 330 TVNMG-------ADQAYQLKELSNDDCLCLLTQISLGT--GDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLL--R--- 395 (1024)
Q Consensus 330 ~~~~~-------~~~~~~l~~L~~~ea~~lf~~~a~~~--~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~--- 395 (1024)
..... ....+.+++.+.++..+++...+... .....+..++.+++......|..+.|+.++-... +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22211 23467899999999999998765321 1111222233333333333455777777664321 1
Q ss_pred CC--CChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccCCC--CceeCHHHHHHH--HHhcCCccc
Q 044195 396 GK--HDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLFPK--GYEFQEEEIISL--WAAEGFLHQ 469 (1024)
Q Consensus 396 ~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~--~~~i~~~~li~~--w~~~gli~~ 469 (1024)
+. -+.++...+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-..
T Consensus 266 ~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred CCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 2345555555432 1223455678999998876655543321 134555555432 222211100
Q ss_pred CCCCccHHHHHHHHHHHHHhcCCcccc
Q 044195 470 ENSGRKMEDLGREFVQELLSRSFFQRS 496 (1024)
Q Consensus 470 ~~~~~~~~~~~~~~~~~Lv~~~l~~~~ 496 (1024)
.. -.....++++.|...+++...
T Consensus 336 ---~~-~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 ---PR-THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ---cC-cHHHHHHHHHHHHhcCCeEEE
Confidence 01 123456689999999998754
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=3.1e-12 Score=151.35 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=69.4
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
++|+.|+|++| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|++++| .+..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECc
Confidence 46888999988 7888887664 589999999999998887654 47899999998 6778887664 578999998
Q ss_pred CCccccccCccCCCCCCCCcc
Q 044195 673 NVHSLEEMPKGFGKLTCLTTL 693 (1024)
Q Consensus 673 ~~~~l~~~p~~i~~l~~L~~L 693 (1024)
+|. +..+|..+. .+|+.|
T Consensus 271 ~N~-L~~LP~~l~--~sL~~L 288 (754)
T PRK15370 271 HNK-ISCLPENLP--EELRYL 288 (754)
T ss_pred CCc-cCccccccC--CCCcEE
Confidence 887 777776543 244444
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=4.2e-14 Score=127.57 Aligned_cols=129 Identities=26% Similarity=0.312 Sum_probs=98.1
Q ss_pred ccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccc
Q 044195 557 DFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSI 636 (1024)
Q Consensus 557 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i 636 (1024)
..+.++++...|.++.+. + ...++.+..+.+|++|++++| .++++|.+++.++.|+.|++.-|++..+|..|
T Consensus 27 ~gLf~~s~ITrLtLSHNK------l-~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK------L-TVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred ccccchhhhhhhhcccCc------e-eecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 334455666666666553 1 345677788888888888888 68888888888888888888888888888888
Q ss_pred ccCCCCcEEecCCCcc-ccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccC
Q 044195 637 NSLYNLHTVLLEDCRR-LKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLC 694 (1024)
Q Consensus 637 ~~L~~L~~L~l~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 694 (1024)
+.++.|++||+..|.. -..+|..+..|+.|+-|++++|. .+-+|++++++++||.|.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILS 156 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEe
Confidence 8888888888877632 23577778888888888888887 778888888888888774
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.4e-13 Score=140.79 Aligned_cols=374 Identities=17% Similarity=0.130 Sum_probs=178.8
Q ss_pred hhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccC-CCccccCcc-cccCCCCcEEecCCCccccccc
Q 044195 581 LAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSR-TNIQILPQS-INSLYNLHTVLLEDCRRLKKLC 657 (1024)
Q Consensus 581 ~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~-~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp 657 (1024)
++......|+.+++||.|||++| +|+.| |+.|..+..|-.|-+-+ |+|+.+|+. |..|..|+.|.+.-| .+..++
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir 156 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIR 156 (498)
T ss_pred cccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchh
Confidence 33444455677777777777777 56665 56667776666665555 667777754 666777777777665 333333
Q ss_pred -cccCCCCcccEEeccCCccccccCc-cCCCCCCCCccCceeeCCCCCcccc-----------cccCcccCCCceEeccC
Q 044195 658 -KDMGNLTKLHHLRNSNVHSLEEMPK-GFGKLTCLTTLCRFVVGKDSGSALR-----------ELKSLTNLQGTLEISSL 724 (1024)
Q Consensus 658 -~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~-----------~l~~L~~L~~~L~i~~l 724 (1024)
..+..|++|..|.+.+|. +..++. .+..+..++++....+.....-.+. +.+...... ...+...
T Consensus 157 ~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~-p~rl~~~ 234 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS-PYRLYYK 234 (498)
T ss_pred HHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc-hHHHHHH
Confidence 346677777777777766 666665 3555556655533222111000000 011110000 0000000
Q ss_pred CCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCC-cccCC
Q 044195 725 ENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFP-IWLGD 803 (1024)
Q Consensus 725 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~ 803 (1024)
.........+... ...+.+--.+.+.. + ....-..+..+++|++|++++|..+.+. .|+..
T Consensus 235 Ri~q~~a~kf~c~---~esl~s~~~~~d~~---------d------~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 235 RINQEDARKFLCS---LESLPSRLSSEDFP---------D------SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred Hhcccchhhhhhh---HHhHHHhhccccCc---------C------CcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 0000000111111 01110000001110 0 0011123566677777777777665543 34443
Q ss_pred CCCCCceEEEEecCCCCCCCC--CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccc----cccccc
Q 044195 804 FPFSKLVSLKFEYCGMCTSLP--SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQ----EWEEWI 877 (1024)
Q Consensus 804 ~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~ 877 (1024)
...++.|.|..|+. +.+. .+..+.+|+.|+|.+|. ++.+....+. ...+|.+|++...+ ---.|.
T Consensus 297 --~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~-----~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 297 --AAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQ-----TLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred --hhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCe-eEEEeccccc-----ccceeeeeehccCcccCccchHHH
Confidence 56677777766653 2222 45566777777777653 3333222211 14455555554321 111111
Q ss_pred ccccc-----cc-ccccCcccceeeeccCcC--Ccc------------cCCCCCCCccEEEEeccc---CccccCCCCCC
Q 044195 878 PRGFA-----QE-VNEVFPKLRKLSLLRCSK--LQG------------TLPERLLLLEKLVIQSCK---QLLVTIQCLPA 934 (1024)
Q Consensus 878 ~~~~~-----~~-~~~~~~~L~~L~l~~c~~--L~~------------~lp~~l~~L~~L~l~~c~---~l~~~l~~l~~ 934 (1024)
..++. +. .......++.+.+++.+. .+. ..|+.++-+.+..-..+. .+|..++ ..
T Consensus 368 ~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d 445 (498)
T KOG4237|consen 368 GEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VD 445 (498)
T ss_pred HHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--ch
Confidence 11110 00 001123455555554311 111 122233333332221111 2233332 24
Q ss_pred cCEEEEccCCCccccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecC
Q 044195 935 LSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSV 990 (1024)
Q Consensus 935 L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 990 (1024)
-.+|++.+|. ++.+|...+.+| .+++++ +.+..+....+.+++.|.+|.|+.+
T Consensus 446 ~telyl~gn~-~~~vp~~~~~~l-~~dls~-n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 446 VTELYLDGNA-ITSVPDELLRSL-LLDLSN-NRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHHHhcccch-hcccCHHHHhhh-hccccc-CceehhhcccccchhhhheeEEecC
Confidence 5678888887 566666677788 888886 5566677777888889998888753
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=7.7e-14 Score=125.88 Aligned_cols=87 Identities=29% Similarity=0.401 Sum_probs=59.0
Q ss_pred hhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcc
Q 044195 587 QLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKL 666 (1024)
Q Consensus 587 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 666 (1024)
+.+..+.+++.|.|++| .+..+|..|..+.+|+.|++++|.|+++|.+|+.|++|++|+++-| .+..+|.+++.++.|
T Consensus 27 ~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchh
Confidence 34455666666777777 5666666677777777777777777777777777777777777665 566666677777777
Q ss_pred cEEeccCCc
Q 044195 667 HHLRNSNVH 675 (1024)
Q Consensus 667 ~~L~l~~~~ 675 (1024)
+.||++.|.
T Consensus 105 evldltynn 113 (264)
T KOG0617|consen 105 EVLDLTYNN 113 (264)
T ss_pred hhhhccccc
Confidence 777766655
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.25 E-value=3.1e-09 Score=119.28 Aligned_cols=300 Identities=13% Similarity=0.110 Sum_probs=172.3
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh-ccC---CceEEEEecCCCCHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ-RRF---QIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~ 256 (1024)
..++||++++++|..+|..... +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 3699999999999999875321 2344678999999999999999999742111 111 145688887777788899
Q ss_pred HHHHHhcc---CCCC-CCCcHHHHHHHHHHHh--CCCceeEEeeccCCC---CHHHHHHhhcCC-CCCC--CCcEEEEEc
Q 044195 257 KSILKSIT---NDQS-KDDDLNWVQEKLKKQL--SGKKFLLVLDDVWNE---NYEYWSIFSRPF-GAGA--PGSKIVVTT 324 (1024)
Q Consensus 257 ~~il~~l~---~~~~-~~~~~~~~~~~l~~~l--~~~~~LlVlDd~~~~---~~~~~~~l~~~~-~~~~--~gs~ilvTt 324 (1024)
..++.++. ...+ ...+..+....+.+.+ .+++++||||+++.- .......+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999884 2211 1223445555566655 356889999999653 111222332221 1111 233445555
Q ss_pred CCchhhhccC-------CccceecCCCChHhHHHHHHhhhcCC-CCCCCCccHHHHHHHHHHHcCCChHHH-HHHHhhh-
Q 044195 325 RNLRVTVNMG-------ADQAYQLKELSNDDCLCLLTQISLGT-GDFNIHPSLKEVGEKIVMKCKGLPLAA-KTLGGLL- 394 (1024)
Q Consensus 325 R~~~~~~~~~-------~~~~~~l~~L~~~ea~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~g~PLai-~~~~~~l- 394 (1024)
........+. ....+.+++.+.++..+++..++... ......++..+.+..++....|.|-.+ .++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4433211111 12468899999999999998875311 111223333344455777778888443 3332111
Q ss_pred -c---C--CCChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccCC--CCceeCHHHHHHHHH--hc
Q 044195 395 -R---G--KHDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLFP--KGYEFQEEEIISLWA--AE 464 (1024)
Q Consensus 395 -~---~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~i~~~~li~~w~--~~ 464 (1024)
. + .-+.+....+.+.. -.....-.+..||.+.+..+..++..- ++..+....+...+. ++
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 1 12333444433321 122344566889998886665554221 334466666655332 22
Q ss_pred CCcccCCCCccHHHHHHHHHHHHHhcCCcccc
Q 044195 465 GFLHQENSGRKMEDLGREFVQELLSRSFFQRS 496 (1024)
Q Consensus 465 gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~ 496 (1024)
.+ .. .........+++..|...|++...
T Consensus 323 ~~-~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DI-GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hc-CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 11 112245677888999999999865
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.21 E-value=9.9e-10 Score=124.87 Aligned_cols=294 Identities=17% Similarity=0.202 Sum_probs=188.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-CCHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-FNVFRVTKSIL 260 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il 260 (1024)
..|-|. ++.+.|.. ..+.|.+.|..|+|.|||||+.+.+. ....=..+.|.++++. .++..+...++
T Consensus 20 ~~v~R~----rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 20 NYVVRP----RLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred cccccH----HHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHH
Confidence 355565 45555543 24789999999999999999999975 1223356889998864 56778888888
Q ss_pred HhccCCCCC-------------CCcHHHHHHHHHHHhC--CCceeEEeeccCCCCHHHHHH-hhcCCCCCCCCcEEEEEc
Q 044195 261 KSITNDQSK-------------DDDLNWVQEKLKKQLS--GKKFLLVLDDVWNENYEYWSI-FSRPFGAGAPGSKIVVTT 324 (1024)
Q Consensus 261 ~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDd~~~~~~~~~~~-l~~~~~~~~~gs~ilvTt 324 (1024)
..+..-.+. ..+...+...+...+. .++..+||||.+-........ +...+.....+-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 777633221 2233445555555443 468999999986543323322 222233344678999999
Q ss_pred CCchhhhc---cCCccceecC----CCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCC
Q 044195 325 RNLRVTVN---MGADQAYQLK----ELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGK 397 (1024)
Q Consensus 325 R~~~~~~~---~~~~~~~~l~----~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 397 (1024)
|....... --....+++. .|+.+|+.++|.... ..+-.+..++.+.+..+|-+-|+..++-.++++
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-------~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG-------SLPLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC-------CCCCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 98643211 1122233332 579999999998863 122334667889999999999999999888844
Q ss_pred CChhHHHHHHhccccCCCCCCCChhh-HHHhhhcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccH
Q 044195 398 HDPRDWEFVLNNDICNLPEENCNIIP-ALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKM 476 (1024)
Q Consensus 398 ~~~~~w~~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~ 476 (1024)
.+.+.--..+... ...+.+ ...--++.||+++|..++-+|+++.- -+.|+.....
T Consensus 241 ~~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg------------- 296 (894)
T COG2909 241 TSAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG------------- 296 (894)
T ss_pred CcHHHHhhhccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc-------------
Confidence 3332222221110 000111 12234588999999999999998542 2333333211
Q ss_pred HHHHHHHHHHHHhcCCcccc-CCCCCcEEEchhHHHHHHHHhc
Q 044195 477 EDLGREFVQELLSRSFFQRS-SKNASRFLMHDLINDLARWAAG 518 (1024)
Q Consensus 477 ~~~~~~~~~~Lv~~~l~~~~-~~~~~~~~~Hdli~~~~~~~~~ 518 (1024)
++.+..++++|.+++++-.. +.....|+.|.++.+|.+..-.
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 34478899999999998643 3356789999999999986543
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=1.5e-09 Score=116.07 Aligned_cols=182 Identities=18% Similarity=0.141 Sum_probs=115.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHH----HH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLK----KQ 283 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~----~~ 283 (1024)
.+++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..++++.++..++.+... .+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 458999999999999999999984321 111 12233 333456778888999888765433 22222233333 22
Q ss_pred -hCCCceeEEeeccCCCCHHHHHHhhcCCC---CCCCCcEEEEEcCCchhhhccC----------CccceecCCCChHhH
Q 044195 284 -LSGKKFLLVLDDVWNENYEYWSIFSRPFG---AGAPGSKIVVTTRNLRVTVNMG----------ADQAYQLKELSNDDC 349 (1024)
Q Consensus 284 -l~~~~~LlVlDd~~~~~~~~~~~l~~~~~---~~~~gs~ilvTtR~~~~~~~~~----------~~~~~~l~~L~~~ea 349 (1024)
..+++.++|+||+|.-....++.+..... .......|++|.... ....+. ....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 26788999999998876666666543211 112233556666543 111111 124578999999999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhh
Q 044195 350 LCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLL 394 (1024)
Q Consensus 350 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 394 (1024)
.+++...+..........-.++..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999887653322111112234788899999999999999988775
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.1e-10 Score=122.44 Aligned_cols=195 Identities=23% Similarity=0.243 Sum_probs=100.6
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH---
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI--- 259 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 259 (1024)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++++.+ .....-..++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 799999999999999753 346899999999999999999998 3322212444554444432221 1111
Q ss_pred -----------HHhccCCC------CCCCcHHHHHHHHHHHh--CCCceeEEeeccCCCC------HHHHHHhhcCCCC-
Q 044195 260 -----------LKSITNDQ------SKDDDLNWVQEKLKKQL--SGKKFLLVLDDVWNEN------YEYWSIFSRPFGA- 313 (1024)
Q Consensus 260 -----------l~~l~~~~------~~~~~~~~~~~~l~~~l--~~~~~LlVlDd~~~~~------~~~~~~l~~~~~~- 313 (1024)
...+.... ............+.+.+ .+++++|||||+.... ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11111110 01112222233333333 3356999999995433 1222222222222
Q ss_pred -CCCCcEEEEEcCCchhhhc--------cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 314 -GAPGSKIVVTTRNLRVTVN--------MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 314 -~~~gs~ilvTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
......+|+++........ .+....+.+++|+.+++++++...+-.. ... +..++..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1233344555444333322 2233459999999999999999864332 111 223466689999999999
Q ss_pred HHHHH
Q 044195 385 LAAKT 389 (1024)
Q Consensus 385 Lai~~ 389 (1024)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98865
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=1.1e-09 Score=119.44 Aligned_cols=276 Identities=17% Similarity=0.134 Sum_probs=143.7
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+|||++..++++..++..... .......+.|+|++|+|||+||+.+++. ....+ ..+..+...... .+...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHHH
Confidence 599999999999998864321 1234567889999999999999999983 22222 112111111111 1112222
Q ss_pred hccCCC----CCCC-cHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhccC--
Q 044195 262 SITNDQ----SKDD-DLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNMG-- 334 (1024)
Q Consensus 262 ~l~~~~----~~~~-~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~-- 334 (1024)
.+.... ++.. -.......+...+.+.+..+|+|+..... .+ ...++ +.+-|..||+...+...+.
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHHhh
Confidence 221110 0000 00111222333334444444444432211 00 11111 2445666777654433221
Q ss_pred CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhccccCC
Q 044195 335 ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVLNNDICNL 414 (1024)
Q Consensus 335 ~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~ 414 (1024)
....+.+++++.++..+++.+.+..... .. ..+.+..|++.|+|.|-.+..++..+ |..........+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCc
Confidence 1246789999999999999987643221 22 23667889999999997665554432 211110000001
Q ss_pred CC-CCCChhhHHHhhhcCCChhHHHHHh-hhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHHHHHHHHH-HHHhcC
Q 044195 415 PE-ENCNIIPALGVSCHFLPPQLKQCFA-YCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLGREFVQ-ELLSRS 491 (1024)
Q Consensus 415 ~~-~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~~~~~~~~-~Lv~~~ 491 (1024)
.. ........+...|..++++.+..+. ..+.+..+ .+..+.+.... | .. ...+...++ .|++++
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~-~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------ED-ADTIEDVYEPYLLQIG 284 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CC-cchHHHhhhHHHHHcC
Confidence 00 0011222356678889988877666 55666543 55554444332 1 11 223556667 699999
Q ss_pred CccccC
Q 044195 492 FFQRSS 497 (1024)
Q Consensus 492 l~~~~~ 497 (1024)
+++.+.
T Consensus 285 li~~~~ 290 (305)
T TIGR00635 285 FLQRTP 290 (305)
T ss_pred CcccCC
Confidence 997654
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=2.1e-09 Score=117.64 Aligned_cols=277 Identities=18% Similarity=0.158 Sum_probs=143.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+|+|++..++.+..++..... .+...+.+.|+|++|+|||++|+.+++. ....+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 4599999999999888865321 1234568899999999999999999983 32221 122211 111111122222
Q ss_pred HhccCCC----CCCCc-HHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhccC-
Q 044195 261 KSITNDQ----SKDDD-LNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNMG- 334 (1024)
Q Consensus 261 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~- 334 (1024)
..+.... ++... .......+...+.+.+..+|+|+...... +...++ +.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecCC---CceEEeecCCcccCCHHHHH
Confidence 2221100 00000 00011112222333333333333211100 000011 2344556666544432221
Q ss_pred -CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhccccC
Q 044195 335 -ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVLNNDICN 413 (1024)
Q Consensus 335 -~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 413 (1024)
....+.+++++.++..+++...+....- .. .++.+..|++.|+|.|-.+..+...+ ..|..... ...
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~---~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~--~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-EI---DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKG--DGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcC--CCC
Confidence 1246899999999999999987654321 22 23678899999999996554444322 12221110 011
Q ss_pred CCC-CCCChhhHHHhhhcCCChhHHHHHh-hhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHHHHHHHHH-HHHhc
Q 044195 414 LPE-ENCNIIPALGVSCHFLPPQLKQCFA-YCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLGREFVQ-ELLSR 490 (1024)
Q Consensus 414 ~~~-~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~~~~~~~~-~Lv~~ 490 (1024)
+.. ........+...+..|++..+..+. ....|+.+ .+..+.+...+- .. .+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~lg-----------~~-~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAALG-----------EE-RDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHHC-----------CC-cchHHHHhhHHHHHc
Confidence 110 0012334556677889888888775 66777665 566666543331 11 123444455 78999
Q ss_pred CCccccC
Q 044195 491 SFFQRSS 497 (1024)
Q Consensus 491 ~l~~~~~ 497 (1024)
++++..+
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997655
No 32
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.02 E-value=1.7e-09 Score=112.74 Aligned_cols=222 Identities=23% Similarity=0.233 Sum_probs=129.6
Q ss_pred cccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 178 VNEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
+...+++|.+..+.++++ .+.+....+||++|+||||||+.++. .....| ..++...+-
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~g----- 85 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSG----- 85 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEecccccc-----
Confidence 445567777766666544 35778899999999999999999998 444444 222322222
Q ss_pred HHHHhccCCCCCCCcHHHHHHHH-HHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE--EcCCchhh---h
Q 044195 258 SILKSITNDQSKDDDLNWVQEKL-KKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV--TTRNLRVT---V 331 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~~~---~ 331 (1024)
..++..+...- +....+++.+|++|.|+.-+....+.+...+ ..|.-|+| ||.++... .
T Consensus 86 ------------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 86 ------------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred ------------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHH
Confidence 22223333333 2234589999999999876655555555444 36777777 67766432 2
Q ss_pred ccCCccceecCCCChHhHHHHHHhhhcCCCCC-C-CCc-cHHHHHHHHHHHcCCChHHHHH---HHhhhcCC---CChhH
Q 044195 332 NMGADQAYQLKELSNDDCLCLLTQISLGTGDF-N-IHP-SLKEVGEKIVMKCKGLPLAAKT---LGGLLRGK---HDPRD 402 (1024)
Q Consensus 332 ~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~-~-~~~-~~~~~~~~i~~~~~g~PLai~~---~~~~l~~~---~~~~~ 402 (1024)
.....+++.+++|+.++...++.+.+...... . ... -.++....|++.++|---++-. ++..+... ...+.
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~ 230 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILEL 230 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHH
Confidence 23456899999999999999998843222211 1 111 1234667788999886432222 22222222 13455
Q ss_pred HHHHHhccccCCCCCC---CChhhHHHhhhcCCChh
Q 044195 403 WEFVLNNDICNLPEEN---CNIIPALGVSCHFLPPQ 435 (1024)
Q Consensus 403 w~~~l~~~~~~~~~~~---~~~~~~l~~sy~~L~~~ 435 (1024)
.+..++.......... .++..+|.-|...=+++
T Consensus 231 l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 231 LEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 5555554333333222 34555666666554433
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.96 E-value=3.6e-08 Score=113.14 Aligned_cols=300 Identities=13% Similarity=0.096 Sum_probs=163.6
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh---hccCC--ceEEEEecCCCCHHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV---QRRFQ--IKAWTFVSEDFNVFR 254 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 254 (1024)
+..++||++|+++|...|...-. +.+...++.|+|++|+|||+.++.|...... +.... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35688999999999999876532 2233467899999999999999999873211 11122 356788877778888
Q ss_pred HHHHHHHhccCCCCC-CCcHHHHHHHHHHHh-C--CCceeEEeeccCCCC---HHHHHHhhcCCCCCCCCcEEEE--EcC
Q 044195 255 VTKSILKSITNDQSK-DDDLNWVQEKLKKQL-S--GKKFLLVLDDVWNEN---YEYWSIFSRPFGAGAPGSKIVV--TTR 325 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l-~--~~~~LlVlDd~~~~~---~~~~~~l~~~~~~~~~gs~ilv--TtR 325 (1024)
++..|..++....+. ..........+...+ . +...+||||+++.-. ++.+-.+..+. ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh--hccCCeEEEEEecC
Confidence 888998888544322 222333444444443 2 234599999995422 11122222211 123455544 443
Q ss_pred Cchh--------hhccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCC
Q 044195 326 NLRV--------TVNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGK 397 (1024)
Q Consensus 326 ~~~~--------~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 397 (1024)
.... ...++ ...+..+|.+.++..+++..++......-.+..++.+|+.++...|-.=.||.++-.+....
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 2221 11222 23477799999999999998875332222333344455544444455666776665444322
Q ss_pred C----ChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccC-C--CCceeCHHHHHHHH--Hhc--C-
Q 044195 398 H----DPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLF-P--KGYEFQEEEIISLW--AAE--G- 465 (1024)
Q Consensus 398 ~----~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~f-p--~~~~i~~~~li~~w--~~~--g- 465 (1024)
. ..++-..+.... -...+.-....||.+.|..+..+... - ....++...+.... +++ |
T Consensus 990 egskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred CCCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 1 112222222111 01123334467898877655433322 1 12245555544432 222 1
Q ss_pred CcccCCCCccHHHHHHHHHHHHHhcCCccccC
Q 044195 466 FLHQENSGRKMEDLGREFVQELLSRSFFQRSS 497 (1024)
Q Consensus 466 li~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~~ 497 (1024)
.+. ....-+ ...+++++|...|++...+
T Consensus 1060 ~iG---v~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1060 YIG---MCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hcC---CCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 111 111223 6777888888888876544
No 34
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=4.4e-09 Score=103.44 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=86.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhcc----CCceEEEEecCCCCHH---HHHHHHHHhccCCCCCCCcHHHHHHHHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRR----FQIKAWTFVSEDFNVF---RVTKSILKSITNDQSKDDDLNWVQEKLK 281 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 281 (1024)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 58999999999999999999975433322 3455666665443322 23333333332211 11111 121
Q ss_pred H-HhCCCceeEEeeccCCCCH--H-----HHHH-hhcCCCC-CCCCcEEEEEcCCchh---hhccCCccceecCCCChHh
Q 044195 282 K-QLSGKKFLLVLDDVWNENY--E-----YWSI-FSRPFGA-GAPGSKIVVTTRNLRV---TVNMGADQAYQLKELSNDD 348 (1024)
Q Consensus 282 ~-~l~~~~~LlVlDd~~~~~~--~-----~~~~-l~~~~~~-~~~gs~ilvTtR~~~~---~~~~~~~~~~~l~~L~~~e 348 (1024)
. .-+.++++||||+++.-.. . .+.. +...+.. ..++.+++||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 2267899999999955321 1 1222 2222222 2468999999998655 3334455689999999999
Q ss_pred HHHHHHhh
Q 044195 349 CLCLLTQI 356 (1024)
Q Consensus 349 a~~lf~~~ 356 (1024)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999876
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=1.5e-10 Score=127.81 Aligned_cols=238 Identities=20% Similarity=0.151 Sum_probs=131.8
Q ss_pred cccCCCCceEEecCCCCCCCCCchhh----hhhhhhCCCCceEEEEeCCCCCccc-------CCccccCCCCCcEeeccC
Q 044195 558 FIRGVQQLRTFLPMKLSDYGGDYLAW----SVLQLLLDLPRLRVFSLCGYCNIID-------LPNEIGNLKHLRFLNLSR 626 (1024)
Q Consensus 558 ~~~~~~~Lr~L~l~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~~-------lp~~l~~l~~L~~L~L~~ 626 (1024)
.+..+.+|+.+.+.++. ++. .....+...+.|+.|+++++ .+.. ++..+..+++|++|++++
T Consensus 18 ~~~~l~~L~~l~l~~~~------l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 18 LLPKLLCLQVLRLEGNT------LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred HHHHHhhccEEeecCCC------CcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccC
Confidence 34455567777776654 222 12333466777888888776 3431 334566677888888888
Q ss_pred CCcc-ccCcccccCCC---CcEEecCCCccc----cccccccCCC-CcccEEeccCCcccc-----ccCccCCCCCCCCc
Q 044195 627 TNIQ-ILPQSINSLYN---LHTVLLEDCRRL----KKLCKDMGNL-TKLHHLRNSNVHSLE-----EMPKGFGKLTCLTT 692 (1024)
Q Consensus 627 ~~i~-~lp~~i~~L~~---L~~L~l~~~~~l----~~lp~~i~~L-~~L~~L~l~~~~~l~-----~~p~~i~~l~~L~~ 692 (1024)
|.+. ..+..+..+.+ |++|++++|... ..+...+..+ ++|+.|++++|. +. .++..+..+++|++
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKE 169 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCE
Confidence 7775 34444444444 888888877322 1223345566 778888888776 33 22222333444444
Q ss_pred cCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHH
Q 044195 693 LCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQT 772 (1024)
Q Consensus 693 L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~ 772 (1024)
|. +............+...+...++|+.|++++|.... ....
T Consensus 170 L~--------------------------l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~------------~~~~ 211 (319)
T cd00116 170 LN--------------------------LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD------------EGAS 211 (319)
T ss_pred EE--------------------------CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh------------HHHH
Confidence 42 211110000111222334455688888888776410 1122
Q ss_pred HHhhccCCCCCccEEEEEecCCCCC-----CcccCCCCCCCceEEEEecCCCCC----CC-CCCCCCCCCceeeecCCCC
Q 044195 773 RVLDMLKPHQKLEELTITGYGGTKF-----PIWLGDFPFSKLVSLKFEYCGMCT----SL-PSVGQLPVLKHLEMRGMDR 842 (1024)
Q Consensus 773 ~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~l-~~l~~l~~L~~L~L~~~~~ 842 (1024)
.....+..+++|+.|++++|..... ...+.. ..++|++|++++|.... .+ ..+..+++|+++++++|..
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 3344566678888888888765431 111111 24688888888886431 11 1344567888888887653
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.91 E-value=3.9e-08 Score=119.36 Aligned_cols=308 Identities=14% Similarity=0.148 Sum_probs=178.6
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceE---EEEecCCCC---HHHHH
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKA---WTFVSEDFN---VFRVT 256 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~---wv~~~~~~~---~~~~~ 256 (1024)
++||+.+++.|.+.+.... .+...++.|.|..|||||+|+++|.. .+.+.+...+ +-....+.. ..+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 7999999999999998774 45667999999999999999999987 3333321111 111111111 23344
Q ss_pred HHHHHhccCCC-------------------C-------------C---------CCcHH-----HHHHHHHHHh-CCCce
Q 044195 257 KSILKSITNDQ-------------------S-------------K---------DDDLN-----WVQEKLKKQL-SGKKF 289 (1024)
Q Consensus 257 ~~il~~l~~~~-------------------~-------------~---------~~~~~-----~~~~~l~~~l-~~~~~ 289 (1024)
++++.++.... . + ..... .....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 44444331110 0 0 00001 1122233333 45699
Q ss_pred eEEeeccCCCCHHHHHHhhcCCCCCC------CCcEEEEEcCCc--hhhhccCCccceecCCCChHhHHHHHHhhhcCCC
Q 044195 290 LLVLDDVWNENYEYWSIFSRPFGAGA------PGSKIVVTTRNL--RVTVNMGADQAYQLKELSNDDCLCLLTQISLGTG 361 (1024)
Q Consensus 290 LlVlDd~~~~~~~~~~~l~~~~~~~~------~gs~ilvTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~ 361 (1024)
++|+||+++.+....+.+........ +..-.+.|.+.. .+.........+.+.||+..+...+........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~- 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT- 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-
Confidence 99999997665544444322221111 112223333332 222233355789999999999999998764321
Q ss_pred CCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCC------CChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChh
Q 044195 362 DFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGK------HDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQ 435 (1024)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 435 (1024)
.....+....|+++..|+|+.+..+-..+... .+...|+.-..+. ......+.+...+..-.+.||..
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCHH
Confidence 22334778889999999999999998888764 2333443322111 11111122455688889999999
Q ss_pred HHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHHHHHHHHHHHHhcCCccc-----cCCCCC---cEEEch
Q 044195 436 LKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLGREFVQELLSRSFFQR-----SSKNAS---RFLMHD 507 (1024)
Q Consensus 436 ~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~-----~~~~~~---~~~~Hd 507 (1024)
.+..+...|++. -.|+.+.|...+.. .....+....+.|....++-. ...... +-..|+
T Consensus 310 t~~Vl~~AA~iG--~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 310 TREVLKAAACIG--NRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHhC--ccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 999999999995 45566666665532 223445555555544444431 111111 225688
Q ss_pred hHHHHHHH
Q 044195 508 LINDLARW 515 (1024)
Q Consensus 508 li~~~~~~ 515 (1024)
.+++.+-.
T Consensus 377 ~vqqaaY~ 384 (849)
T COG3899 377 RVQQAAYN 384 (849)
T ss_pred HHHHHHhc
Confidence 88877643
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=4.1e-10 Score=124.32 Aligned_cols=268 Identities=21% Similarity=0.144 Sum_probs=159.2
Q ss_pred hhCCCCceEEEEeCCCCCc-----ccCCccccCCCCCcEeeccCCCccc-------cCcccccCCCCcEEecCCCccccc
Q 044195 588 LLLDLPRLRVFSLCGYCNI-----IDLPNEIGNLKHLRFLNLSRTNIQI-------LPQSINSLYNLHTVLLEDCRRLKK 655 (1024)
Q Consensus 588 ~l~~l~~L~~L~L~~~~~l-----~~lp~~l~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~~l~~ 655 (1024)
.+..+.+|++|++++| .+ ..++..+...++|++|+++++.+.. ++..+.++++|+.|++++|.....
T Consensus 18 ~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 18 LLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3456666999999998 45 3356667788889999998887652 345567788999999998854434
Q ss_pred cccccCCCCc---ccEEeccCCccccc-----cCccCCCC-CCCCccCceeeCCCCCcccccccCcccCCCceEeccCCC
Q 044195 656 LCKDMGNLTK---LHHLRNSNVHSLEE-----MPKGFGKL-TCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLEN 726 (1024)
Q Consensus 656 lp~~i~~L~~---L~~L~l~~~~~l~~-----~p~~i~~l-~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~ 726 (1024)
.+..+..+.+ |++|++++|. +.. +...+..+ ++|+. +.+.+...
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~--------------------------L~L~~n~l 149 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEK--------------------------LVLGRNRL 149 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceE--------------------------EEcCCCcC
Confidence 4444544444 9999998887 331 11122222 33333 33333222
Q ss_pred CCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC-----Cccc
Q 044195 727 VKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF-----PIWL 801 (1024)
Q Consensus 727 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~ 801 (1024)
.......+...+..+++|++|++++|.... .........+...++|+.|++++|.+... +..+
T Consensus 150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 150 EGASCEALAKALRANRDLKELNLANNGIGD------------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CchHHHHHHHHHHhCCCcCEEECcCCCCch------------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 111122344456677899999999887511 11223344566678999999999876432 2233
Q ss_pred CCCCCCCceEEEEecCCCCC-CCCCC-----CCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccc
Q 044195 802 GDFPFSKLVSLKFEYCGMCT-SLPSV-----GQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEE 875 (1024)
Q Consensus 802 ~~~~l~~L~~L~L~~~~~~~-~l~~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 875 (1024)
. .+++|+.|++++|.... .+..+ ...+.|++|++++|... ..+..... .....+++|+.++++++ .+..
T Consensus 218 ~--~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~-~~~~~~~~L~~l~l~~N-~l~~ 292 (319)
T cd00116 218 A--SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT-DDGAKDLA-EVLAEKESLLELDLRGN-KFGE 292 (319)
T ss_pred c--ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC-cHHHHHHH-HHHhcCCCccEEECCCC-CCcH
Confidence 3 37899999999997543 11111 13489999999998532 11111000 01123689999999883 3332
Q ss_pred cccccccccccccC-cccceeeeccCc
Q 044195 876 WIPRGFAQEVNEVF-PKLRKLSLLRCS 901 (1024)
Q Consensus 876 ~~~~~~~~~~~~~~-~~L~~L~l~~c~ 901 (1024)
........ ....+ +.|+.|++.+++
T Consensus 293 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 293 EGAQLLAE-SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHH-HHhhcCCchhhcccCCCC
Confidence 21111000 00013 688888887764
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.75 E-value=3.2e-10 Score=117.83 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=66.1
Q ss_pred CCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcc----cCCCCCCCccEEEEecccCcc-----ccC
Q 044195 859 FPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQG----TLPERLLLLEKLVIQSCKQLL-----VTI 929 (1024)
Q Consensus 859 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~----~lp~~l~~L~~L~l~~c~~l~-----~~l 929 (1024)
+..|+.|..+++..+.+.....+... .++|+.|.++.|..++. .+..+.+.|+.+++..|.... +.-
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~----~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQH----CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcC----CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 44555555555555444333333322 45566666665554442 111344555555555554221 223
Q ss_pred CCCCCcCEEEEccCCCccccCC-------CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcc
Q 044195 930 QCLPALSELQIRGCRRVVFSSP-------IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYL 996 (1024)
Q Consensus 930 ~~l~~L~~L~l~~~~~l~~~~~-------~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l 996 (1024)
.+++.|+.|.+++|..++...+ .....|+.|.+++|+.+++-....+..+++|+.+++.+|...+.-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 3455566666665554443311 123355555666666555544445555566666666666555443
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.74 E-value=1.1e-07 Score=97.95 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=96.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
.+.+.|+|++|+|||+|++++++. .......+.|+++.... .... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-c
Confidence 367899999999999999999983 33334456777654210 0000 1111122 3
Q ss_pred ceeEEeeccCCCC-HHHHHH-hhcCCCCC-CCCcEEEE-EcCC---------chhhhccCCccceecCCCChHhHHHHHH
Q 044195 288 KFLLVLDDVWNEN-YEYWSI-FSRPFGAG-APGSKIVV-TTRN---------LRVTVNMGADQAYQLKELSNDDCLCLLT 354 (1024)
Q Consensus 288 ~~LlVlDd~~~~~-~~~~~~-l~~~~~~~-~~gs~ilv-TtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~lf~ 354 (1024)
.-+|||||+|... ...|+. +...+... ..|..+|| |++. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 4599999998632 234542 33322221 13555554 4543 2444445556789999999999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhh
Q 044195 355 QISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLL 394 (1024)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 394 (1024)
+.++...- .. -+++.+-|++++.|..-++..+-..+
T Consensus 172 ~~a~~~~l-~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI-EL---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88764321 22 23677889999998876665554433
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=2.3e-10 Score=118.89 Aligned_cols=299 Identities=17% Similarity=0.179 Sum_probs=180.1
Q ss_pred CCCcEEecCCCccccccc--cccCCCCcccEEeccCCccccccC--ccCCCCCCCCccCceeeCCCCCcccccccCcccC
Q 044195 640 YNLHTVLLEDCRRLKKLC--KDMGNLTKLHHLRNSNVHSLEEMP--KGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNL 715 (1024)
Q Consensus 640 ~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 715 (1024)
..|+.|.+++|..+..-+ ..-.+++++++|.+.+|..+++-- ..-..+.+|++|..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L-------------------- 197 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL-------------------- 197 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh--------------------
Confidence 457788888885543322 234567888888888877444311 00112333443321
Q ss_pred CCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCC
Q 044195 716 QGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGT 795 (1024)
Q Consensus 716 ~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 795 (1024)
..+..+ ....+...-..+++|+.|+++||..-. ...+-.....+..++.+..+||...
T Consensus 198 ------~~c~~i--T~~~Lk~la~gC~kL~~lNlSwc~qi~--------------~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 198 ------HSCSSI--TDVSLKYLAEGCRKLKYLNLSWCPQIS--------------GNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred ------cccchh--HHHHHHHHHHhhhhHHHhhhccCchhh--------------cCcchHHhccchhhhhhhhcccccc
Confidence 111111 111122234567889999999987410 0111222334555666666665543
Q ss_pred CCCcccC-CCCCCCceEEEEecCCCCCCCC---CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccc
Q 044195 796 KFPIWLG-DFPFSKLVSLKFEYCGMCTSLP---SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQ 871 (1024)
Q Consensus 796 ~~p~~~~-~~~l~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 871 (1024)
.+..... ....+-+..+++..|..+++.. .-..+..|+.|..++|..+.+....-.+ ...++|+.|.+..|.
T Consensus 256 ~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 256 ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQ 331 (483)
T ss_pred cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccc
Confidence 3322211 1134556677777776665433 1234677888888888776554333333 236888888888888
Q ss_pred cccccccccccccccccCcccceeeeccCcCCccc----CCCCCCCccEEEEecccCcc--------ccCCCCCCcCEEE
Q 044195 872 EWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGT----LPERLLLLEKLVIQSCKQLL--------VTIQCLPALSELQ 939 (1024)
Q Consensus 872 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~----lp~~l~~L~~L~l~~c~~l~--------~~l~~l~~L~~L~ 939 (1024)
++.+.....+... .+.|+.+++..|...+.. +..+++.|+.|.++.|.... .+-.....|+.+.
T Consensus 332 ~fsd~~ft~l~rn----~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 332 QFSDRGFTMLGRN----CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred hhhhhhhhhhhcC----ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 8777666665555 788999988888544321 23577889999998886543 2234466799999
Q ss_pred EccCCCccccC---CCCCCCccEEEEcCCCCcccchhhhc-CCCCCCCEEeee
Q 044195 940 IRGCRRVVFSS---PIDFSSLKSVFLGDIANQVVLAALFE-QGLPQLESLKID 988 (1024)
Q Consensus 940 l~~~~~l~~~~---~~~l~~L~~L~l~~c~~l~~l~~~~l-~~l~~L~~L~l~ 988 (1024)
+++|+.+.... ...+++|+.+++.+|...+.-+...+ .++|+++...+-
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 99999765432 24577999999999988776655445 578888776543
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1.1e-08 Score=98.37 Aligned_cols=127 Identities=24% Similarity=0.272 Sum_probs=53.0
Q ss_pred cCCCCceEEecCCCCCCCCCchhhhhhhhhC-CCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccc-c
Q 044195 560 RGVQQLRTFLPMKLSDYGGDYLAWSVLQLLL-DLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSI-N 637 (1024)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~ 637 (1024)
.+..++|.|.+.++. -..++.+. .+.+|++|+|++| .+..++ .+..+++|++|++++|.|+++++.+ .
T Consensus 16 ~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccc--------cccccchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 345567788877765 22345564 6789999999999 788885 5888999999999999999887655 3
Q ss_pred cCCCCcEEecCCCccccccc--cccCCCCcccEEeccCCccccccCcc----CCCCCCCCccCceee
Q 044195 638 SLYNLHTVLLEDCRRLKKLC--KDMGNLTKLHHLRNSNVHSLEEMPKG----FGKLTCLTTLCRFVV 698 (1024)
Q Consensus 638 ~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~ 698 (1024)
.+++|++|++++| .+..+. ..+..+++|++|++.+|+ +...+.. +..+++|+.|+...+
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 6899999999998 665543 346788999999999998 6554432 566788888865544
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.71 E-value=2.6e-07 Score=104.29 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=105.1
Q ss_pred ccccchhhHHH---HHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 182 KVYGREKDKEA---IVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 182 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
++||++..+.. +..++.. .....+.|+|++|+||||+|+.+++. .... |+.++........++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHH
Confidence 48888776555 7777643 34457889999999999999999873 2222 2222221111111122
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE--EcCCchhh---hc
Q 044195 259 ILKSITNDQSKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV--TTRNLRVT---VN 332 (1024)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~~~---~~ 332 (1024)
++ ...... ..+++.+|+||+++.-.....+.+...+. .|..++| ||.+.... ..
T Consensus 80 ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 22 122111 24578899999998766666666665554 2444544 34433211 11
Q ss_pred cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 333 MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
......+.+.+++.++...++.+.+..... ...+-..+..+.|++.|+|.|..+..+.
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 123367899999999999999886432111 0002224667789999999997665443
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=6.1e-08 Score=90.86 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=83.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhh---ccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQ---RRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ 283 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 283 (1024)
+.+++.|+|++|+|||+++..++...... ..-..++|+.+....+...+...++.+++.......+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999842111 013456799998888999999999999998876656777777888888
Q ss_pred hCCCc-eeEEeeccCCC-CHHHHHHhhcCCCCCCCCcEEEEEcCC
Q 044195 284 LSGKK-FLLVLDDVWNE-NYEYWSIFSRPFGAGAPGSKIVVTTRN 326 (1024)
Q Consensus 284 l~~~~-~LlVlDd~~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~ 326 (1024)
+...+ .+||||+++.- ....++.+..... ..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 86554 59999999665 5555666654433 466788887765
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=3.1e-07 Score=95.37 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=101.2
Q ss_pred chhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccC
Q 044195 186 REKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITN 265 (1024)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 265 (1024)
.+..++.+.+++.. ...+.|.|+|++|+|||+||+.+++. ........++++++.-.... .
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~---~-------- 82 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQAD---P-------- 82 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhH---H--------
Confidence 34566777776532 24568999999999999999999973 33333455666654322100 0
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHH-H-HHHhhcCCCC-CCCCcEEEEEcCCchh---------hhcc
Q 044195 266 DQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYE-Y-WSIFSRPFGA-GAPGSKIVVTTRNLRV---------TVNM 333 (1024)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~-~-~~~l~~~~~~-~~~gs~ilvTtR~~~~---------~~~~ 333 (1024)
.+...+.+ .-+|||||++.-... . .+.+...+.. ...+.++|+||+.... ...+
T Consensus 83 -------------~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 83 -------------EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred -------------HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 11111222 348999999653321 2 2333333221 1234578898885321 1122
Q ss_pred CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhh
Q 044195 334 GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGL 393 (1024)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 393 (1024)
.....++++++++++...++...+.... .. -.++..+.|++.++|+|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~---~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRG-LQ---LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2235789999999999999887543211 11 22366678888999999877766433
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.6e-08 Score=105.97 Aligned_cols=149 Identities=18% Similarity=0.177 Sum_probs=98.0
Q ss_pred cceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhh-CCCCceEEEEeCCCCCcccCCccc--c
Q 044195 538 QSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLL-LDLPRLRVFSLCGYCNIIDLPNEI--G 614 (1024)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~lp~~l--~ 614 (1024)
+++|.+++..+.......-.....|+++|.|.++.+.- ..+.....| ..+++|+.|+|+.| .+...-++. .
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~-----~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~ 194 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF-----HNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL 194 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhH-----HhHHHHHHHHHhcccchhcccccc-cccCCccccchh
Confidence 44566666554322111114566889999999988752 224444445 88999999999998 444332221 4
Q ss_pred CCCCCcEeeccCCCcc--ccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccC--ccCCCCCCC
Q 044195 615 NLKHLRFLNLSRTNIQ--ILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMP--KGFGKLTCL 690 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L 690 (1024)
.+++|+.|.|+.|+++ .+-.....+++|+.|++..|..+.........+..|+.|++++|. +..++ ..++.++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccch
Confidence 6789999999999987 444455678999999999884332222234567889999999998 55655 335666666
Q ss_pred Ccc
Q 044195 691 TTL 693 (1024)
Q Consensus 691 ~~L 693 (1024)
..|
T Consensus 274 ~~L 276 (505)
T KOG3207|consen 274 NQL 276 (505)
T ss_pred hhh
Confidence 666
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.2e-06 Score=95.15 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=115.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcCh----hhhccCCceEEEEe-cCCCCHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDD----RVQRRFQIKAWTFV-SEDFNVFRVT 256 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~ 256 (1024)
+++|-+..++.+..++... .-.....++|+.|+||||+|+.++... ....|+|...|... +......+ +
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 4789888889999988543 334577899999999999999998721 12334454445431 22222222 2
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhh-hc-cC
Q 044195 257 KSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVT-VN-MG 334 (1024)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~-~~-~~ 334 (1024)
+++.+.+... -..+++-++|+|+++.-+...++.+...+.....++.+|++|.+.+.. .. ..
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2222222111 123456688888887667778888888888777788888888654321 11 12
Q ss_pred CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 335 ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 335 ~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
..+.+.+.++++++....+.+...+ . ..+.+..++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND-I-------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC-C-------CHHHHHHHHHHcCCCHHHHHH
Confidence 3468999999999998888664311 1 124467789999999875543
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.7e-06 Score=95.81 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=108.2
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc-------------------CCceE
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-------------------FQIKA 242 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~ 242 (1024)
+++|.+..++.+.+.+... .-...+.++|++|+||||+|+.++........ +....
T Consensus 17 ~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred hccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 5899999999998888643 23456789999999999999999873211000 11112
Q ss_pred EEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCC
Q 044195 243 WTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPG 317 (1024)
Q Consensus 243 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~g 317 (1024)
+++.+.. ...+... .+.+.+ .+++-++|||+++.-+...++.+...+......
T Consensus 92 ~~~~~~~---------------------~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 92 EIDAASR---------------------TKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred Eeccccc---------------------CCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 2211111 1112211 122221 245569999999776666677777666655556
Q ss_pred cEEEEEcCCc-hhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 318 SKIVVTTRNL-RVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 318 s~ilvTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
.++|++|.+. .+... .+....+++.+++.++..+.+...+...+. . -.++.+..|++.++|.|-.+
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~---i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-D---TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 6777766543 23222 123468999999999999888775433221 1 12356778999999988543
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=4.2e-08 Score=111.48 Aligned_cols=105 Identities=34% Similarity=0.456 Sum_probs=90.6
Q ss_pred hhhCCCCceEEEEeCCCCCcccCCccccCCC-CCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCc
Q 044195 587 QLLLDLPRLRVFSLCGYCNIIDLPNEIGNLK-HLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTK 665 (1024)
Q Consensus 587 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 665 (1024)
..+..+..++.|++.++ .+.++|...+.+. +|+.|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++
T Consensus 110 ~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 34456688999999999 7999998888885 999999999999999888999999999999998 88899887779999
Q ss_pred ccEEeccCCccccccCccCCCCCCCCccC
Q 044195 666 LHHLRNSNVHSLEEMPKGFGKLTCLTTLC 694 (1024)
Q Consensus 666 L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 694 (1024)
|+.|++++|. +..+|..++.+..|+.|.
T Consensus 188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 188 LNNLDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred hhheeccCCc-cccCchhhhhhhhhhhhh
Confidence 9999999998 889988765666666663
No 49
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.54 E-value=1.4e-07 Score=94.54 Aligned_cols=47 Identities=26% Similarity=0.397 Sum_probs=32.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.||||+++++++...+... ..+..+.+.|+|++|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999622 3456799999999999999999999984
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.54 E-value=4.8e-06 Score=96.05 Aligned_cols=247 Identities=17% Similarity=0.125 Sum_probs=137.8
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|.+..++++.+|+..... +...+.+.|+|++|+||||+|++++++. .|+ .+-+++++..+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHH
Confidence 4599999999999999976431 1236789999999999999999999842 122 233444433222 2222332
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCH----HHHHHhhcCCCCCCCCcEEEEEcCCch-hhh-cc-
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENY----EYWSIFSRPFGAGAPGSKIVVTTRNLR-VTV-NM- 333 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~----~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~-~~- 333 (1024)
....... .....++-+||||+++.-.. ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221110 00113677999999965321 234444444332 2344666665432 211 11
Q ss_pred CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCC---CChhHHHHHHhcc
Q 044195 334 GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGK---HDPRDWEFVLNND 410 (1024)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~---~~~~~w~~~l~~~ 410 (1024)
.....+.+.+++.++....+...+...+- ..+ .+....|++.++|..-.+......+... -+.+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 23467899999999999888876543221 222 3677889999999776554333333322 12233332221
Q ss_pred ccCCCCCCCChhhHHHhhhc-CCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCccc
Q 044195 411 ICNLPEENCNIIPALGVSCH-FLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQ 469 (1024)
Q Consensus 411 ~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~ 469 (1024)
.+....++.++..-+. .-.......+.. ..++.+ .+-.|+.+.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 1122356666665554 223333333222 223333 3668999998764
No 51
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.53 E-value=1e-06 Score=90.21 Aligned_cols=176 Identities=17% Similarity=0.214 Sum_probs=107.8
Q ss_pred cccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 178 VNEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
+...++||-+..+.. ++. ......+.+||++|+||||||+.++...... ...||..+....-..-.+
T Consensus 141 vGQ~hlv~q~gllrs---~ie------q~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 141 VGQSHLVGQDGLLRS---LIE------QNRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVR 207 (554)
T ss_pred cchhhhcCcchHHHH---HHH------cCCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHH
Confidence 444556665443333 332 2466789999999999999999999843222 255777776554444445
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE--EcCCchhh---hc
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV--TTRNLRVT---VN 332 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~~~---~~ 332 (1024)
+++++... ...+.++|.+|++|.|+.-+..+.+. ++|....|.-++| ||.++... ..
T Consensus 208 ~ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 208 DIFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHH
Confidence 55444221 12346789999999996644333333 3455557777776 77776442 22
Q ss_pred cCCccceecCCCChHhHHHHHHhhhc--C-CCC---CCCCc---cHHHHHHHHHHHcCCCh
Q 044195 333 MGADQAYQLKELSNDDCLCLLTQISL--G-TGD---FNIHP---SLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~lf~~~a~--~-~~~---~~~~~---~~~~~~~~i~~~~~g~P 384 (1024)
+....++.+++|..++...++.+... + .+. .-..+ -...+.+-++..|+|--
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 34567899999999999988877322 2 221 11111 12345566777888864
No 52
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.52 E-value=1.7e-06 Score=96.08 Aligned_cols=198 Identities=13% Similarity=0.116 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEecCCCCH-HHHHH-
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVSEDFNV-FRVTK- 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~- 257 (1024)
..++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..+++++++-... ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 35899999999999888532 334688999999999999999987321 12222 2344544321100 00000
Q ss_pred --HHHHhccCC-CCCCCcHHHHHHHHHHH---h--CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-h
Q 044195 258 --SILKSITND-QSKDDDLNWVQEKLKKQ---L--SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-R 328 (1024)
Q Consensus 258 --~il~~l~~~-~~~~~~~~~~~~~l~~~---l--~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~ 328 (1024)
.....++.. .......+.....+... . .+.+-+||+||+..-.......+...+......+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00000111111112111 1 2345589999996554444445554443333456787777543 2
Q ss_pred hhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 329 VTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 329 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
+...+ .....+.+.+++.++...++...+...+- . -..+.++.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22222 23357889999999999988876543221 1 1236778899999998655433
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.52 E-value=1.4e-06 Score=85.32 Aligned_cols=182 Identities=20% Similarity=0.200 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+|||-+.-++.+.-++..... .+.....+.+||++|+||||||..+++ .....|. +.+...-..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k--------- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEK--------- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--S---------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhh---------
Confidence 4699999888887666543211 234677899999999999999999998 4444442 222211000
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC--------CCC-----------cEEE
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG--------APG-----------SKIV 321 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~--------~~g-----------s~il 321 (1024)
..++...+. .+ +++.+|++|+++.-+...-+.+..++.++ +++ +-|=
T Consensus 89 ------------~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 89 ------------AGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp ------------CHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ------------HHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 111111111 12 24557888999775544444444333221 111 1233
Q ss_pred EEcCCchhhhccCCc--cceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhc
Q 044195 322 VTTRNLRVTVNMGAD--QAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLR 395 (1024)
Q Consensus 322 vTtR~~~~~~~~~~~--~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 395 (1024)
.|||...+...+..- -..+++.-+.+|-..+..+.+..- .-+-.++.+..|+++|.|-|--+.-+-+.++
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 477765544433321 234799999999999998765332 2233457889999999999965555444443
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.6e-06 Score=98.67 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh-------------------ccCCce
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ-------------------RRFQIK 241 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~~~ 241 (1024)
.++||.+...+.|.+++... .-...+.++|++|+||||+|+.+++..-.. ..|..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 35899999999999999643 234678999999999999999998631100 011112
Q ss_pred EEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHH----HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCC
Q 044195 242 AWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKK----QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPG 317 (1024)
Q Consensus 242 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~g 317 (1024)
+.++.+.. ...+++...+.. ...++.-++|||+++.-+...++.+...+.....+
T Consensus 90 iEIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 22222211 112222221111 12356679999999876666777777666655456
Q ss_pred cEEEEEcCCch-hh-hccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 318 SKIVVTTRNLR-VT-VNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 318 s~ilvTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
.++|++|.+.. +. ........+++++++.++....+...+...+. . -..+....|++.++|.+-.+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-A---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 67777776532 22 11234478999999999999888776533221 1 223566789999999875443
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=9e-09 Score=107.85 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=77.0
Q ss_pred hhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCccc-CCCCCCCceEEEE
Q 044195 736 AQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWL-GDFPFSKLVSLKF 814 (1024)
Q Consensus 736 ~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-~~~~l~~L~~L~L 814 (1024)
+.-.++++|+.+.|..+...+.+. . .....+++++.|++++|-+...-.-. ....+|+|+.|+|
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~------------~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGI------------E---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNL 179 (505)
T ss_pred HHhhhHHhhhheeecCccccccch------------h---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccc
Confidence 334566777777777766522210 0 23445677777777776543221100 0124677777777
Q ss_pred ecCCCCCCCC--CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCccc
Q 044195 815 EYCGMCTSLP--SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKL 892 (1024)
Q Consensus 815 ~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 892 (1024)
+.|....... .-..++.|+.|.|+.|..-.. +. + .....||+|+.|++.+...+..... ....+..|
T Consensus 180 s~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k---~V-~-~~~~~fPsl~~L~L~~N~~~~~~~~------~~~i~~~L 248 (505)
T KOG3207|consen 180 SSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWK---DV-Q-WILLTFPSLEVLYLEANEIILIKAT------STKILQTL 248 (505)
T ss_pred ccccccCCccccchhhhhhhheEEeccCCCCHH---HH-H-HHHHhCCcHHHhhhhcccccceecc------hhhhhhHH
Confidence 7765432221 123466677777776632100 00 0 0112366666666665432111110 11125566
Q ss_pred ceeeeccCcCCcccCC-----CCCCCccEEEEecc
Q 044195 893 RKLSLLRCSKLQGTLP-----ERLLLLEKLVIQSC 922 (1024)
Q Consensus 893 ~~L~l~~c~~L~~~lp-----~~l~~L~~L~l~~c 922 (1024)
+.|+|++|+.+. ++ .+++.|..|.++.|
T Consensus 249 ~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 249 QELDLSNNNLID--FDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hhccccCCcccc--cccccccccccchhhhhcccc
Confidence 666666664332 22 24455555555554
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4e-06 Score=96.57 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc-------------------cCCce
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR-------------------RFQIK 241 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~ 241 (1024)
.++||.+..++.|.+++... .-...+.++|..|+||||+|+.+++...... .|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 35899999999999998643 2345667999999999999998876321111 11112
Q ss_pred EEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCC
Q 044195 242 AWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPG 317 (1024)
Q Consensus 242 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~g 317 (1024)
++++.+... ..+++...+... ..++.-++|||+++.-+...++.+...+.....+
T Consensus 91 iEIDAas~r---------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNR---------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecccccc---------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 222222111 122222222211 1345558999999887777788887766655567
Q ss_pred cEEEEEcCCch-hhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 044195 318 SKIVVTTRNLR-VTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP-LAAKTL 390 (1024)
Q Consensus 318 s~ilvTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 390 (1024)
.++|+||.+.. +... ......+++++++.++..+.+.+.+.... .. -..+....|++.++|.. -|+.++
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~---id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IA---FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78888777643 2211 22446899999999999998887643221 11 12366778999999865 455543
No 57
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=4.2e-06 Score=89.51 Aligned_cols=167 Identities=14% Similarity=0.186 Sum_probs=103.4
Q ss_pred cccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 178 VNEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
.+...|+||++++..+...|...+. ...+++.|+|++|+|||||++.+..... + ...+++.. +..++++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 3456799999999999999975432 3457999999999999999999996322 1 12233322 6799999
Q ss_pred HHHHhccCCCCCC--CcHHHHHHHHHHHh-C-CCceeEEeeccCCCC-HHHHHHhhcCCCCCCCCcEEEEEcCCchhhh-
Q 044195 258 SILKSITNDQSKD--DDLNWVQEKLKKQL-S-GKKFLLVLDDVWNEN-YEYWSIFSRPFGAGAPGSKIVVTTRNLRVTV- 331 (1024)
Q Consensus 258 ~il~~l~~~~~~~--~~~~~~~~~l~~~l-~-~~~~LlVlDd~~~~~-~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~- 331 (1024)
.++.+++.+.... .-...+.+.+.+.- . +++.+||+-=-...+ ...+++... +.....-|+|++---.+.+..
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcchh
Confidence 9999999743322 11233333443322 3 677777775332221 123333222 222334567777544333211
Q ss_pred --ccCCccceecCCCChHhHHHHHHhh
Q 044195 332 --NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 332 --~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
....-..|.+++++.++|.++....
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 1123357889999999998877553
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.2e-06 Score=100.75 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc-------------------CCce
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-------------------FQIK 241 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 241 (1024)
.++||-+..+..|.+++... .-...+.++|++|+||||+|+.+++....... |..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 35899999999999988643 22345689999999999999999973211100 1111
Q ss_pred EEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEE
Q 044195 242 AWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKI 320 (1024)
Q Consensus 242 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~i 320 (1024)
++++......+ .++.++...+.. ...+++-++|||+++.-+...++.+...+.....+.++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22211111111 111222222211 12467779999999887777888887777655556676
Q ss_pred EEEcCCc-hhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 321 VVTTRNL-RVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 321 lvTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
|++|.+. .+... ......|++++++.++...++...+-... .. ...+.+..|++.++|.|--+..
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~---~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LP---FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 6666553 33212 22347899999999999998887543211 11 1236678899999998864433
No 59
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=4e-07 Score=84.38 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=76.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
+++.|.|+.|+||||++++++.+.. ....++|++..+........ .+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 6899999999999999999997322 33456677655433211000 00 2233333344478
Q ss_pred eeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhc------cCCccceecCCCChHhH
Q 044195 289 FLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVN------MGADQAYQLKELSNDDC 349 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~------~~~~~~~~l~~L~~~ea 349 (1024)
.+|+||++... ..|......+.+..+..+|++|+........ .+....++|.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999553 4566665555555466899999997654322 12335689999998774
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.4e-06 Score=83.70 Aligned_cols=125 Identities=18% Similarity=0.084 Sum_probs=72.3
Q ss_pred ccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhc
Q 044195 184 YGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSI 263 (1024)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (1024)
+|++..+..+...+... ..+.+.|+|++|+|||++++++++.. ...-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888888888887542 34689999999999999999999843 2222456666655443322221111000
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCH---HHHHHhhcCCCCC---CCCcEEEEEcCCch
Q 044195 264 TNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENY---EYWSIFSRPFGAG---APGSKIVVTTRNLR 328 (1024)
Q Consensus 264 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~---~~~~~l~~~~~~~---~~gs~ilvTtR~~~ 328 (1024)
............++.++|+||++.... ..+......+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222345788999999975322 2222222322221 35678888887643
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=7.3e-07 Score=101.67 Aligned_cols=194 Identities=17% Similarity=0.180 Sum_probs=110.6
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|-+..++.|..++... .-...+.++|++|+||||+|+.+++.......+....|.+.+-. .+......-+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 5899998888888888653 23356799999999999999999873221111211122211000 00000000000
Q ss_pred hccCCCCCCCcHHH---HHHHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhhhcc-CC
Q 044195 262 SITNDQSKDDDLNW---VQEKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVTVNM-GA 335 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~---~~~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~~~~-~~ 335 (1024)
.+... .....+. +...+.. -+.+++-++|||+++..+...++.+...+........+|++|.. ..+...+ ..
T Consensus 89 el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred Eeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 01100 1111222 2111211 12356679999999877767788877777655455555555543 3332222 23
Q ss_pred ccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 336 DQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 336 ~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
...+++.+++.++....+...+...+- .. ..+.+..|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi-~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGR-EA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 467999999999999999886543221 11 2366788999999998544
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.2e-08 Score=110.32 Aligned_cols=180 Identities=22% Similarity=0.270 Sum_probs=117.7
Q ss_pred hhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCC
Q 044195 585 VLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLT 664 (1024)
Q Consensus 585 ~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 664 (1024)
.+..+..|..|..|.|..| .+..+|..++++..|.+|||+.|.+..+|..++.|+ |+.|-+++| +++.+|..++.+.
T Consensus 90 lp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred CchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccch
Confidence 3444555666777777777 577777778888888888888888888887777665 777877776 7777888888777
Q ss_pred cccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCC
Q 044195 665 KLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNL 744 (1024)
Q Consensus 665 ~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L 744 (1024)
.|.+|+.+.|. +..+|..++.+.+|+.|....+. ...++..+.. -.|
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-------------------------------l~~lp~El~~-LpL 213 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-------------------------------LEDLPEELCS-LPL 213 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-------------------------------hhhCCHHHhC-Cce
Confidence 88888888777 77777777777777766321110 0112222332 256
Q ss_pred CcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCC-CCCCceEEEEecC
Q 044195 745 EALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDF-PFSKLVSLKFEYC 817 (1024)
Q Consensus 745 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~-~l~~L~~L~L~~~ 817 (1024)
.+|++++|... ..+-.+..+..|++|.|.+|....=|..+... ...=.++|+..-|
T Consensus 214 i~lDfScNkis-----------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKIS-----------------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCcee-----------------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 77777777652 23445667778888888887776655444221 1233456666666
No 63
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.5e-06 Score=94.92 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc--CCceEEEEecCCCCHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR--FQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.++||-+..++.|.+++... .-...+.++|+.|+||||+|+.+++...-... -.... +.........+.
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 35899999999999999654 23456789999999999999999862211000 00000 000000011111
Q ss_pred HHHh-----ccCCCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-ch
Q 044195 259 ILKS-----ITNDQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LR 328 (1024)
Q Consensus 259 il~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~ 328 (1024)
|... +..+......++++...+... ..++.-++|||+++.-+...++.+...+.....+.++|++|.+ ..
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1100 000000111223222222221 2456669999999887777888887777655455665555544 34
Q ss_pred hhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 329 VTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 329 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
+...+ .....+.++.++.++..+.+.+.+.... ... ..+....|++.++|.|.-...
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~---d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAH---EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 33222 2347899999999999998886543211 111 135567899999999964433
No 64
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.41 E-value=2.9e-07 Score=97.30 Aligned_cols=290 Identities=17% Similarity=0.176 Sum_probs=176.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCc-eEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQI-KAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
..|-|.++|.|||||||++-.+.. ++..|.. +.++....-.+...+.-.+...++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 458999999999999999999886 5666754 44565555555555555555555544322 1223345566677
Q ss_pred CCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhccCCccceecCCCChH-hHHHHHHhhhcCCC-CC
Q 044195 286 GKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNMGADQAYQLKELSND-DCLCLLTQISLGTG-DF 363 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~lf~~~a~~~~-~~ 363 (1024)
+++.++|+||...-- ..-..+...+..+.+.-.|+.|+|..-. ..+...+.+++|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999983211 1222233334444455678999986433 234567788888775 78888876653221 11
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhccccCC-------CCCCCChhhHHHhhhcCCChhH
Q 044195 364 NIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVLNNDICNL-------PEENCNIIPALGVSCHFLPPQL 436 (1024)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~-------~~~~~~~~~~l~~sy~~L~~~~ 436 (1024)
............|.++.+|.|++|..+++....- ....-...++.....+ ..........+.+||.-|+...
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 2233345777889999999999999998887655 2222222222211111 1112457889999999999999
Q ss_pred HHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHHHHHHHHHHHHhcCCccccCC-CCCcEEEchhHHHHHHH
Q 044195 437 KQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDLGREFVQELLSRSFFQRSSK-NASRFLMHDLINDLARW 515 (1024)
Q Consensus 437 k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~~~-~~~~~~~Hdli~~~~~~ 515 (1024)
+--|-.++.|...+... ...|++-|--. ....-..-..+..+++++++..... ....|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998776543 33455543211 0011123334566777777654331 22344444444555443
Q ss_pred H
Q 044195 516 A 516 (1024)
Q Consensus 516 ~ 516 (1024)
+
T Consensus 313 e 313 (414)
T COG3903 313 E 313 (414)
T ss_pred H
Confidence 3
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.8e-05 Score=86.44 Aligned_cols=204 Identities=15% Similarity=0.124 Sum_probs=128.1
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC--ceEEEEecCCCCHHHHHHHHH
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ--IKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il 260 (1024)
+.+|+++++++...|...-. ++.+.-+.|+|.+|+|||+.++.++. ++..... .+++|++-...+..+++..|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 88999999999988876642 23344599999999999999999998 4444432 278999999999999999999
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHh--CCCceeEEeeccCCCCHHHHHHhhcCCCCCC-CCcEEEE--EcCCchhhhccC-
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQL--SGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-PGSKIVV--TTRNLRVTVNMG- 334 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-~gs~ilv--TtR~~~~~~~~~- 334 (1024)
.+++..+.......+....+.+.+ .++.+++|||++..-....-+.+...+.... .+++|++ .+-+......+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 999865555556666666777766 4588999999984321110022222222111 2454433 333332222111
Q ss_pred ------CccceecCCCChHhHHHHHHhhhcCCCC-CCCCc-cHHHHHHHHHHHcCCChHHHHHH
Q 044195 335 ------ADQAYQLKELSNDDCLCLLTQISLGTGD-FNIHP-SLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 335 ------~~~~~~l~~L~~~ea~~lf~~~a~~~~~-~~~~~-~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
....+..+|=+.+|-..++..++-..-. ....+ .++-++...++..|--=.||..+
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2234788999999999999887532211 12223 33334443333343445555555
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.4e-06 Score=95.35 Aligned_cols=184 Identities=19% Similarity=0.188 Sum_probs=112.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh-------------------hccCCceE
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV-------------------QRRFQIKA 242 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-------------------~~~f~~~~ 242 (1024)
+++|-+..++.+...+... .-...+.++|+.|+||||+|+.++....- ...|...+
T Consensus 17 diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 5899999999999888643 23356789999999999999999862110 01122333
Q ss_pred EEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEE
Q 044195 243 WTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIV 321 (1024)
Q Consensus 243 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~il 321 (1024)
+++........ +...+...+.. -..+++-++|||+++.-+...++.+...+......+.+|
T Consensus 92 eidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 92 EIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 33322222221 11222222221 134567799999997777777777777777655566666
Q ss_pred EEc-CCchhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHh
Q 044195 322 VTT-RNLRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLGG 392 (1024)
Q Consensus 322 vTt-R~~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 392 (1024)
++| ....+... ......+++++++.++....+...+...+ .. ..+.....|++.++|.+- |+..+-.
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~---~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-IN---SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 544 43333322 22447899999999998888776543211 11 123566779999999774 5555433
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.40 E-value=4.9e-06 Score=90.69 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=104.7
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEecCCCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 259 (1024)
.+++|.++.++.|..++.. +..+.+.++|++|+||||+|+.+++.. ....|. .++-++.++..+.. .++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 3588988888888877753 234567899999999999999998732 122232 12222222222211 12222
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhcc-CCcc
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVNM-GADQ 337 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~-~~~~ 337 (1024)
+..+...... .-.++.-++|||+++.-+....+.+...+......+++++++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2111100000 002346699999997765555555554444333456777766543 221111 1235
Q ss_pred ceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHH
Q 044195 338 AYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLA 386 (1024)
Q Consensus 338 ~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 386 (1024)
.++++++++++....+...+...+- ..+ .+....|++.++|..-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi-~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV-PYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHH
Confidence 7899999999999888876543221 112 35678899999987643
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7.5e-06 Score=92.96 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=110.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCc-eEEEEecCCCCHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQI-KAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il 260 (1024)
++||-+..+..+...+... .-...+.++|++|+||||+|+.++...-....... .-+..+... .....+.
T Consensus 22 dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHh
Confidence 5899999888888877543 23467899999999999999999873211100000 000000000 0001110
Q ss_pred Hhcc-----CCCCCCCcHHHHHHHHHH----HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE-EcCCchhh
Q 044195 261 KSIT-----NDQSKDDDLNWVQEKLKK----QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV-TTRNLRVT 330 (1024)
Q Consensus 261 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv-TtR~~~~~ 330 (1024)
.... .........+++...+.. -+.+++-++|||+++.-+...++.+...+......+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0000 000011122222222211 1245677999999988777788888777765555666655 44444443
Q ss_pred hcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 331 VNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 331 ~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
..+ .....+++.+++.++....+...+...+. .. ..+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 322 23467899999999999999887643221 11 2355677999999987433
No 69
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1e-05 Score=88.09 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=115.6
Q ss_pred ccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc--cCCceEEEEecCCCCHHHHH
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR--RFQIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~ 256 (1024)
.-..++|-++..+.+...+.+. .-...+.|+|+.|+||||+|..++...--.. .+.... ...+.......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHH
Confidence 3456899999999999988643 2345789999999999999999887321100 011110 01111111223
Q ss_pred HHHHHh-------ccCCCC-------CCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCC
Q 044195 257 KSILKS-------ITNDQS-------KDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPG 317 (1024)
Q Consensus 257 ~~il~~-------l~~~~~-------~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~g 317 (1024)
+.+... +..+.+ ..-.++++. .+.+++ .+++-++|||+++.-+....+.+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 333222 111100 111233332 344443 356679999999877776777776666544344
Q ss_pred cE-EEEEcCCchhhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 318 SK-IVVTTRNLRVTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 318 s~-ilvTtR~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
.. |++|++...+...+ .....+++.+++.++..+++...+... . -..+.+..|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 44554443332211 234689999999999999998743211 1 113556789999999998665443
No 70
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.3e-05 Score=87.81 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=113.2
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEE---EEecCCCCHHHHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAW---TFVSEDFNVFRVT 256 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w---v~~~~~~~~~~~~ 256 (1024)
..+++|.++.++.+.+.+... .-...+.++|+.|+||+|+|..++...--......... .............
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 356999999999999888653 23456889999999999999888762110010000000 0000000000111
Q ss_pred HHHHHhc-------cCCC-C------CCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCC
Q 044195 257 KSILKSI-------TNDQ-S------KDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPG 317 (1024)
Q Consensus 257 ~~il~~l-------~~~~-~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~g 317 (1024)
+.+...- .... . ..-.+++ ++.+.+.+ .+.+-++|||+++.-+....+.+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111110 0000 0 1112333 23333443 356779999999877777777777666655456
Q ss_pred cEEEEEcCCch-hhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 318 SKIVVTTRNLR-VTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 318 s~ilvTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
+.+|++|.... +... ....+.+.+.+++.+++.+++...... . + ......+++.++|.|+.+..+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~-~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L-P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C-C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 66666666543 3211 234578999999999999999875311 0 1 1222678999999998665543
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=3.7e-06 Score=93.22 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.++||-+..+..|..++.... -...+.++|++|+||||+|+.++....- ..... ...+..... .+.+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcH----HHHHH
Confidence 358999988899988886432 2346899999999999999999873211 11000 001111111 11111
Q ss_pred HhccCC--------CCCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhh
Q 044195 261 KSITND--------QSKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVT 330 (1024)
Q Consensus 261 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~ 330 (1024)
...... ..+..+..++...+... ..++.-++|||+++.-+...++.+...+........+|.+|.. ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 111100 00111222222222211 2456679999999887777888887777654445555545443 3332
Q ss_pred hcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044195 331 VNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL 385 (1024)
Q Consensus 331 ~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 385 (1024)
..+ ...+.|.+.+++.++..+.+...+...+ ... ..+....|++.++|.+-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~---e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQY---DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCChHH
Confidence 222 3446799999999999888887653322 111 23667889999999984
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.37 E-value=7.6e-06 Score=90.07 Aligned_cols=180 Identities=14% Similarity=0.163 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEe--cCCCCHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFV--SEDFNVFRVTKS 258 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 258 (1024)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++.. ....+.. .++.+ +...... ..++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHHH
Confidence 35899999999999998543 33457999999999999999998732 1112211 12222 2211111 1111
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhcc-CCc
Q 044195 259 ILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVNM-GAD 336 (1024)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~-~~~ 336 (1024)
.+.++....+ .....+-++++|+++.-.......+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001345689999986555445555555554444456777766432 221111 123
Q ss_pred cceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 337 QAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 337 ~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
..+.+.+++.++....+...+...+- .. .++.+..+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~-~i---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI-EI---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 46899999999998888876543221 11 2366788999999987653
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.36 E-value=5e-06 Score=85.84 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=88.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
..+.|+|.+|+|||+|++++++. .......++|+++.+ ....+. ..+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 46999999999999999999883 333344666776432 111000 111 111 133
Q ss_pred eeEEeeccCCCC-HHHHH-HhhcCCCC-CCCCcEEEEEcCCch---------hhhccCCccceecCCCChHhHHHHHHhh
Q 044195 289 FLLVLDDVWNEN-YEYWS-IFSRPFGA-GAPGSKIVVTTRNLR---------VTVNMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 289 ~LlVlDd~~~~~-~~~~~-~l~~~~~~-~~~gs~ilvTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
-+|||||+.... ...|. .+...+.. ...|..||+|++... +..++.....+++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 599999995421 11232 22222211 124567999998532 1223334568899999999999999987
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 357 SLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
+.... .. -.++...-|++.++|-.-.+
T Consensus 175 a~~~~-l~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG-LA---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC-CC---CCHHHHHHHHHhCCCCHHHH
Confidence 65321 11 22366777888898766554
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.36 E-value=5.1e-06 Score=98.58 Aligned_cols=169 Identities=22% Similarity=0.263 Sum_probs=98.3
Q ss_pred CccccchhhHH---HHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKE---AIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
.+|+|.+..+. .+..++.. +....+.|+|++|+||||+|+.+++ .....|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhh-----
Confidence 35889887664 45555542 3456789999999999999999997 3333331 111110 000
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHh--CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEE--cCCch--hhh
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKKQL--SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVT--TRNLR--VTV 331 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvT--tR~~~--~~~ 331 (1024)
.+.........+.+ .+++.+|||||++.-....++.+...+. .|+.++|+ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 01111112222222 2467799999997766556666665443 35555553 33321 111
Q ss_pred c-cCCccceecCCCChHhHHHHHHhhhcC------CCCCCCCccHHHHHHHHHHHcCCChH
Q 044195 332 N-MGADQAYQLKELSNDDCLCLLTQISLG------TGDFNIHPSLKEVGEKIVMKCKGLPL 385 (1024)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~lf~~~a~~------~~~~~~~~~~~~~~~~i~~~~~g~PL 385 (1024)
. ......+.+++++.++...++...+-. ..... -.++....|++.+.|.--
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCHH
Confidence 1 123467999999999999998876531 11111 223566778888888743
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=5.4e-06 Score=95.52 Aligned_cols=181 Identities=16% Similarity=0.179 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc-------------------cCCce
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR-------------------RFQIK 241 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~ 241 (1024)
.++||.+..+..|.+++... .-...+.++|+.|+||||+|+.++....... .|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 35999999999999998643 2345789999999999999999876311110 01111
Q ss_pred EEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEE
Q 044195 242 AWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKI 320 (1024)
Q Consensus 242 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~i 320 (1024)
+.++.+..... .++.++...... -..+++-++|||++..-+....+.+...+.......++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 22221111111 111111111111 12356679999999776655666666666544455677
Q ss_pred EEEcCCc-hhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 321 VVTTRNL-RVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 321 lvTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
|++|.+. .+... .+....+.+.+++.++....+.+.+-..+- .. ..+.+..|++.++|.+.-+.
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~i---d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AY---EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHhCCCHHHHH
Confidence 7766543 22211 123356888999999999988876543221 11 23667889999999885443
No 76
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=7.9e-06 Score=90.19 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=107.8
Q ss_pred ccccchhhHHHHHHHHHhCCCC----CCCCeEEEEEEecCCCcHHHHHHHHhcChhhh------------------ccCC
Q 044195 182 KVYGREKDKEAIVELLLRDGLR----ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ------------------RRFQ 239 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~------------------~~f~ 239 (1024)
+++|-+..++.|.+++...... +..-...+.++|++|+|||++|+.++...--. ..++
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999999765210 01134678899999999999999987521000 0011
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCC
Q 044195 240 IKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAG 314 (1024)
Q Consensus 240 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~ 314 (1024)
...++.... .....+++.. +.+.+ .+++-++|||+++.-+....+.+...+...
T Consensus 86 D~~~i~~~~--------------------~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 86 DVRVVAPEG--------------------LSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CEEEecccc--------------------ccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111221110 1112222222 22221 345568999999776666666666666554
Q ss_pred CCCcEEEEEcCCc-hhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 315 APGSKIVVTTRNL-RVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 315 ~~gs~ilvTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
..+..+|++|.+. .+... ......+.+.+++.++..+.+.... + .. .+.+..+++.++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4566666666553 33322 2344789999999999998887432 1 11 255778999999999755444
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=8e-06 Score=91.86 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChh------------------h-hccCCce
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDR------------------V-QRRFQIK 241 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~------------------~-~~~f~~~ 241 (1024)
.++||-+..++.+.+.+... .-...+.++|+.|+||||+|+.++.... + ...+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 35899998888888888543 2345789999999999999999875110 0 0112233
Q ss_pred EEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEE
Q 044195 242 AWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIV 321 (1024)
Q Consensus 242 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~il 321 (1024)
+.++.+...+..+ .+++++.... .-+.++.-++|||+++.-+...++.+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4444433332222 1222221110 0123456689999997767667777777777655667777
Q ss_pred EEcCC-chhhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 322 VTTRN-LRVTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 322 vTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
++|.. ..+...+ .....+.+++++.++....+.+.+...+. . -.++.+..|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~---i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-E---HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 66643 3333222 24467899999999999988876543221 1 12356678999999987533
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=7.4e-06 Score=95.01 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.++||-+..++.|.+.+... .-...+.++|+.|+||||+|+.++...--...+. ..+.......+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 35899999999998888643 2234568999999999999999986321110000 00001111111111
Q ss_pred Hhcc-----CCCCCCCcHHH---HHHHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhh
Q 044195 261 KSIT-----NDQSKDDDLNW---VQEKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVT 330 (1024)
Q Consensus 261 ~~l~-----~~~~~~~~~~~---~~~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~ 330 (1024)
..-. .........++ +...+.. -..++.-++|||+++.-+...++.+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1000 00000111222 2222211 124667799999998877777888777776555566666655553 332
Q ss_pred hc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 331 VN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
.. ......+.+++++.++....+...+.... .. ...+....|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IP---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 22347899999999999998887542211 11 12355678999999988644433
No 79
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.33 E-value=1.3e-05 Score=80.13 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=63.5
Q ss_pred CCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCC
Q 044195 286 GKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDF 363 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~ 363 (1024)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 456689999997766666777777776555566677766643 222211 23468999999999999988876 1 1
Q ss_pred CCCccHHHHHHHHHHHcCCChH
Q 044195 364 NIHPSLKEVGEKIVMKCKGLPL 385 (1024)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~g~PL 385 (1024)
. ++.+..|++.++|.|.
T Consensus 170 --~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --S---EEAAELLLALAGGSPG 186 (188)
T ss_pred --C---HHHHHHHHHHcCCCcc
Confidence 1 3668889999999985
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.33 E-value=9e-06 Score=84.03 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=91.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
.+.+.|+|++|+|||+|++++++. ....-..+.|+++..... ...+.. +.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~----~~~~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVL----EGME-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHH----HHhh-h
Confidence 358999999999999999999983 333334456666543110 001111 1111 1
Q ss_pred ceeEEeeccCCCC-HHHHHH-hhcCCCCC-CCC-cEEEEEcCCch---------hhhccCCccceecCCCChHhHHHHHH
Q 044195 288 KFLLVLDDVWNEN-YEYWSI-FSRPFGAG-APG-SKIVVTTRNLR---------VTVNMGADQAYQLKELSNDDCLCLLT 354 (1024)
Q Consensus 288 ~~LlVlDd~~~~~-~~~~~~-l~~~~~~~-~~g-s~ilvTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~ 354 (1024)
--+|+|||+.... ...|+. +...+... ..| .++|+||+... ...++....++.++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999995421 123432 22222111 123 47999998542 22334455789999999999999988
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhh
Q 044195 355 QISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGL 393 (1024)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 393 (1024)
+++.... .. --+++..-|++++.|..-++..+-..
T Consensus 178 ~~a~~~~-~~---l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 178 LRARLRG-FE---LPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHcC-CC---CCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 7654321 12 22477788999999877665554433
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.6e-05 Score=90.02 Aligned_cols=187 Identities=19% Similarity=0.245 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc-------------------CCce
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-------------------FQIK 241 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 241 (1024)
.++||.+.....|...+... .-...+.++|++|+||||+|+.+++....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 35899988888888877543 22356889999999999999999863211000 0112
Q ss_pred EEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEE
Q 044195 242 AWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKI 320 (1024)
Q Consensus 242 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~i 320 (1024)
+.++.+...+...+ +.+. ..+.. ...+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~-----------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIR-----------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHH-----------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 1111 11111 12346679999999665555566666665544334444
Q ss_pred EEEcCC-chhhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHHhhh
Q 044195 321 VVTTRN-LRVTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG-LPLAAKTLGGLL 394 (1024)
Q Consensus 321 lvTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~l 394 (1024)
|++|.+ ..+...+ .....+.+.+++.++....+.+.+...+- .. .++....|++.++| .+.|+..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444433 3332222 24467899999999999888876543221 11 23566778888865 467777775543
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.33 E-value=1.3e-08 Score=110.01 Aligned_cols=121 Identities=23% Similarity=0.373 Sum_probs=102.0
Q ss_pred CCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCC
Q 044195 561 GVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLY 640 (1024)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~ 640 (1024)
.+..|..+.+..+.. ...+..+..+..|++|||+.| .+..+|..++.|+ |+.|-+++|+++.+|..|+.+.
T Consensus 96 ~f~~Le~liLy~n~~-------r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 96 AFVSLESLILYHNCI-------RTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLP 166 (722)
T ss_pred HHHHHHHHHHHhccc-------eecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccch
Confidence 444555666554431 345677889999999999999 7999999888774 9999999999999999999999
Q ss_pred CCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCcc
Q 044195 641 NLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTL 693 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 693 (1024)
.|..||.+.| .+..+|..++.+.+|+.|++..|. +..+|.++..| .|..|
T Consensus 167 tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~l 216 (722)
T KOG0532|consen 167 TLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRL 216 (722)
T ss_pred hHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeee
Confidence 9999999998 899999999999999999999998 89999987744 35555
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=6.1e-06 Score=97.16 Aligned_cols=200 Identities=18% Similarity=0.180 Sum_probs=115.2
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC---CceEEEEecC---CCCHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF---QIKAWTFVSE---DFNVFRV 255 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~---~~~~~~~ 255 (1024)
.++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 4889999988888777432 34579999999999999999998743322222 1233444432 1122222
Q ss_pred HHHH---------------HHhccCCC----------------CC-CCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHH
Q 044195 256 TKSI---------------LKSITNDQ----------------SK-DDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEY 303 (1024)
Q Consensus 256 ~~~i---------------l~~l~~~~----------------~~-~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~ 303 (1024)
...+ +...+... ++ ..-....+..+.+.++++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11111100 00 0111235677888888889998888787776667
Q ss_pred HHHhhcCCCCCCCCcEEEE--EcCCchh-hhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHH
Q 044195 304 WSIFSRPFGAGAPGSKIVV--TTRNLRV-TVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMK 379 (1024)
Q Consensus 304 ~~~l~~~~~~~~~gs~ilv--TtR~~~~-~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~ 379 (1024)
|+.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.+.++.+.+-... .... +++.+.|.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHC
Confidence 8887766666555555555 5664431 1111 1234678899999999999998653221 1111 2444445444
Q ss_pred cCCChHHHHHHH
Q 044195 380 CKGLPLAAKTLG 391 (1024)
Q Consensus 380 ~~g~PLai~~~~ 391 (1024)
+..-+-|+..++
T Consensus 385 s~~gRraln~L~ 396 (615)
T TIGR02903 385 TIEGRKAVNILA 396 (615)
T ss_pred CCcHHHHHHHHH
Confidence 443345555444
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.31 E-value=7.9e-06 Score=84.59 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=89.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (1024)
..+.+.|+|.+|+|||+||+++++.. ...=...++++....... + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~--~~~~~~~~~i~~~~~~~~----------~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA--SYGGRNARYLDAASPLLA----------F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEehHHhHHH----------H------------------hh-cc
Confidence 34678999999999999999999832 111123445554331100 0 01 12
Q ss_pred CceeEEeeccCCCCHHHHHHhhcCCCCC-CCCc-EEEEEcCCchhhh--------ccCCccceecCCCChHhHHHHHHhh
Q 044195 287 KKFLLVLDDVWNENYEYWSIFSRPFGAG-APGS-KIVVTTRNLRVTV--------NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 287 ~~~LlVlDd~~~~~~~~~~~l~~~~~~~-~~gs-~ilvTtR~~~~~~--------~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
..-+||+||+..-+...-..+...+... ..+. .||+|++...... .+.....+.++++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3457999999543322223333333211 1333 4667766533211 2222367899999998877777664
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhh
Q 044195 357 SLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLL 394 (1024)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 394 (1024)
+.... .. -.++..+.+++.+.|++..+..+...+
T Consensus 170 ~~~~~-v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-LQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32211 12 223677888999999999887776554
No 85
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=2.7e-07 Score=88.81 Aligned_cols=87 Identities=28% Similarity=0.433 Sum_probs=30.5
Q ss_pred hCCCCceEEEEeCCCCCcccCCcccc-CCCCCcEeeccCCCccccCcccccCCCCcEEecCCCcccccccccc-CCCCcc
Q 044195 589 LLDLPRLRVFSLCGYCNIIDLPNEIG-NLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDM-GNLTKL 666 (1024)
Q Consensus 589 l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L 666 (1024)
+.+..+++.|+|++| .|..+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 345567899999999 788774 466 5889999999999999886 4888999999999998 788886555 468999
Q ss_pred cEEeccCCcccccc
Q 044195 667 HHLRNSNVHSLEEM 680 (1024)
Q Consensus 667 ~~L~l~~~~~l~~~ 680 (1024)
++|++++|. +..+
T Consensus 91 ~~L~L~~N~-I~~l 103 (175)
T PF14580_consen 91 QELYLSNNK-ISDL 103 (175)
T ss_dssp -EEE-TTS----SC
T ss_pred CEEECcCCc-CCCh
Confidence 999999998 6554
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=1.7e-05 Score=88.67 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=108.1
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh--c------------------cCCce
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ--R------------------RFQIK 241 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~------------------~f~~~ 241 (1024)
+++|.+..++.+.+++... .-...+.++|++|+||||+|+.++....-. . +++ .
T Consensus 15 ~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~ 88 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-V 88 (355)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-E
Confidence 5899999999999988643 234578899999999999999887621100 0 111 1
Q ss_pred EEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEE
Q 044195 242 AWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKI 320 (1024)
Q Consensus 242 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~i 320 (1024)
++++.+...... +...+...+... +.+++-++|+|++..-.....+.+...+......+.+
T Consensus 89 ~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 222221111111 111122221111 2345568999998665555666666666544455666
Q ss_pred EEEcCCch-hhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 321 VVTTRNLR-VTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 321 lvTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
|++|.+.. +...+ .....+.+.++++++...++...+...+. .. .++.+..|++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KI---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCChHHHHHH
Confidence 66665443 22211 23357889999999999888876533221 11 2367788999999998655444
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.1e-05 Score=92.18 Aligned_cols=195 Identities=17% Similarity=0.214 Sum_probs=108.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|.+..++.+.+++... .-.+.+.++|++|+||||+|+.++....-.. |... ...+.....+.+..
T Consensus 17 dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 17 QIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHc
Confidence 5899999999999988543 2346788999999999999999986211000 1110 01111111111111
Q ss_pred hccC-----CCCCCCcHHHH---HHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcC-Cchhhh
Q 044195 262 SITN-----DQSKDDDLNWV---QEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTR-NLRVTV 331 (1024)
Q Consensus 262 ~l~~-----~~~~~~~~~~~---~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR-~~~~~~ 331 (1024)
.... ........+++ ...+... ..+++-++|+|+++.-+...++.+...+........+|++|. ...+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 1000 00001112222 2111111 123444799999977666677777766655444555655553 333322
Q ss_pred c-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHh
Q 044195 332 N-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLGG 392 (1024)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 392 (1024)
. ......+++.+++.++....+...+...+. ... .+.+..|++.++|.+- |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 234468999999999999888875532211 111 3567789999999764 4444443
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.5e-05 Score=92.46 Aligned_cols=195 Identities=17% Similarity=0.202 Sum_probs=110.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc--CCceEEEEecCCCCHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR--FQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
++||-+..++.|.+++... .-...+.++|+.|+||||+|+.++...--... ..+.-. ...+.....+.|
T Consensus 17 dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 5899888888899888653 23456789999999999999999652110000 000000 000111111111
Q ss_pred HHhc-----cCCCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chh
Q 044195 260 LKSI-----TNDQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRV 329 (1024)
Q Consensus 260 l~~l-----~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~ 329 (1024)
-..- ..........+++...+... ..++.-++|||+++.-+...++.+...+.......++|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 00000111222222222111 1344558999999887777888888777665556666655543 333
Q ss_pred hhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 330 TVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 330 ~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
... ......+++++++.++....+...+...+- .. ..+....|++.++|.+--+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 222 234478999999999999888876533221 11 235677899999998754433
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.4e-05 Score=91.55 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=108.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh-------------------ccCCceE
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ-------------------RRFQIKA 242 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~~~~ 242 (1024)
++||-+..++.|.+++.... -...+.++|++|+||||+|+.++...--. ..|..++
T Consensus 17 divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 58999999999999996542 23467899999999999999988622110 1122233
Q ss_pred EEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE
Q 044195 243 WTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV 322 (1024)
Q Consensus 243 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv 322 (1024)
.++.+....+.++ +++++.+... -..++.-++|||+++.-+....+.+...+......+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 3332222222221 2222211110 1135566899999987777777777776665555677776
Q ss_pred EcCCc-hhhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 323 TTRNL-RVTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 323 TtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
+|.+. .+...+ .....+++++++.++....+...+-..+- .. ..+....|++.++|.+--+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~---~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EF---ENAALDLLARAANGSVRDA 217 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHH
Confidence 65442 332111 23467889999999888776655432211 11 1355677999999988544
No 90
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=1.8e-06 Score=88.87 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=63.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC--CCHHHHHHHHHHhccCCCCCCCcHH------HHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED--FNVFRVTKSILKSITNDQSKDDDLN------WVQE 278 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 278 (1024)
....++|+|++|+|||||+++++++.... +|+..+|+.+... .+..++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999965433 8999999997766 7899999998444433222211111 1122
Q ss_pred HHHHH-hCCCceeEEeeccCC
Q 044195 279 KLKKQ-LSGKKFLLVLDDVWN 298 (1024)
Q Consensus 279 ~l~~~-l~~~~~LlVlDd~~~ 298 (1024)
....+ -.++++++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 258999999999943
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=1e-06 Score=69.28 Aligned_cols=56 Identities=27% Similarity=0.487 Sum_probs=32.7
Q ss_pred ceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCC
Q 044195 594 RLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDC 650 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~ 650 (1024)
+|++|++++| .+..+| ..+.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4566666666 565555 345556666666666666665543 4555666666666555
No 92
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=1.8e-05 Score=84.71 Aligned_cols=214 Identities=16% Similarity=0.141 Sum_probs=130.1
Q ss_pred ccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.+..++||+.|++.+.+|+...-. ....+.+.|.|.+|.|||.+...++.+..-...=..++++++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 345689999999999999987642 345678999999999999999999875322222135578888776777788888
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCC--CceeEEeeccCCCCHHHHHHhhcCCCCC-CCCcEEEEEcCCch--hh---
Q 044195 259 ILKSITNDQSKDDDLNWVQEKLKKQLSG--KKFLLVLDDVWNENYEYWSIFSRPFGAG-APGSKIVVTTRNLR--VT--- 330 (1024)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDd~~~~~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~--~~--- 330 (1024)
|...+...........+....+..++.. ..+|+|+|..+.-....-..+...|.+. -+++++|+.---.. ..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8877732222222224455566666643 4789999998432111112233333322 35676665432111 10
Q ss_pred -----hcc-CCccceecCCCChHhHHHHHHhhhcCCCCCC-CCccHHHHHHHHHHHcCCChHHHHHHHhhh
Q 044195 331 -----VNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFN-IHPSLKEVGEKIVMKCKGLPLAAKTLGGLL 394 (1024)
Q Consensus 331 -----~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 394 (1024)
... ...+.+..+|-+.++..++|..+.-...... .+..++-.|++++...|.+--|+.+.-+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 111 2446788899999999999998754332211 222344444555544555556665555443
No 93
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=2.2e-07 Score=92.41 Aligned_cols=125 Identities=24% Similarity=0.261 Sum_probs=95.0
Q ss_pred cCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccC
Q 044195 560 RGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSL 639 (1024)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L 639 (1024)
.....|.+++++.+. + ..+-++..-.+.+|+|++++| .+..+-. +..|++|+.|||++|.++++-..-.+|
T Consensus 281 dTWq~LtelDLS~N~------I-~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL------I-TQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred chHhhhhhccccccc------h-hhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhh
Confidence 344556677776654 2 222344466788999999999 6777644 888899999999999988887777788
Q ss_pred CCCcEEecCCCccccccccccCCCCcccEEeccCCccccccC--ccCCCCCCCCccCce
Q 044195 640 YNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMP--KGFGKLTCLTTLCRF 696 (1024)
Q Consensus 640 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~ 696 (1024)
-|.++|.+++| .+..+ .++++|-+|..||+.+|. +..+. .+||+|+.|+++...
T Consensus 352 GNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 352 GNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred cCEeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhc
Confidence 89999999997 77776 568889999999999988 76553 358888888888543
No 94
>PRK05642 DNA replication initiation factor; Validated
Probab=98.21 E-value=1.6e-05 Score=81.98 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=92.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
...+.|+|..|+|||.|++++++. ....-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 367899999999999999999873 332234566776432 1110 0 1122223222
Q ss_pred ceeEEeeccCCC-CHHHHHH-hhcCCCC-CCCCcEEEEEcCCchh---------hhccCCccceecCCCChHhHHHHHHh
Q 044195 288 KFLLVLDDVWNE-NYEYWSI-FSRPFGA-GAPGSKIVVTTRNLRV---------TVNMGADQAYQLKELSNDDCLCLLTQ 355 (1024)
Q Consensus 288 ~~LlVlDd~~~~-~~~~~~~-l~~~~~~-~~~gs~ilvTtR~~~~---------~~~~~~~~~~~l~~L~~~ea~~lf~~ 355 (1024)
-+||+||+... ....|.. +...+.. ...|..||+|++.... ..++....+++++++++++-.+++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 37889999532 1123332 3333321 1246679998885322 12223446789999999999999986
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhh
Q 044195 356 ISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLL 394 (1024)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 394 (1024)
++.... ... .+++..-|++++.|..-++..+-..|
T Consensus 178 ka~~~~-~~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-LHL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-CCC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 654321 112 24777889999998876665554443
No 95
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3e-05 Score=89.54 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=108.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh-------------------ccCCceE
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ-------------------RRFQIKA 242 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~~~~ 242 (1024)
++||-+..++.+.+++... .-...+.++|++|+||||+|+.++...... ..|...+
T Consensus 17 divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 5899999999999988643 223467899999999999999997632110 0111222
Q ss_pred EEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE
Q 044195 243 WTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV 322 (1024)
Q Consensus 243 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv 322 (1024)
+++.+...... .++++++.+... -..+++-++|+|+++.-+....+.+...+......+.+|+
T Consensus 92 ei~~~~~~~vd-~ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 92 EVDAASNTQVD-AMRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred EeeccccCCHH-HHHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 23222111111 111222111100 1135667999999977666667777766665545566666
Q ss_pred EcCC-chhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044195 323 TTRN-LRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTL 390 (1024)
Q Consensus 323 TtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 390 (1024)
+|.+ ..+... ......+++++++.++....+...+...+ .. ..++.+..|++.++|.+- |+..+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IP---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 333211 12236789999999999988876543221 11 123566789999999875 44444
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.6e-05 Score=90.71 Aligned_cols=196 Identities=16% Similarity=0.209 Sum_probs=112.3
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC--ceEEEEecCCCCHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ--IKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 258 (1024)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.++...-...... ...+-.+ ......+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHH
Confidence 35899999999999998643 2345788999999999999999987321111000 0000000 01111111
Q ss_pred HHHhccC-----CCCCCCcHHHHHH---HHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc-CCch
Q 044195 259 ILKSITN-----DQSKDDDLNWVQE---KLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT-RNLR 328 (1024)
Q Consensus 259 il~~l~~-----~~~~~~~~~~~~~---~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~ 328 (1024)
|...-.. ........+++.. .+.. -+.+++-++|+|+++.-+....+.+...+.....++++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2111100 0001112222222 2211 123455689999997766667777777666555566666655 3333
Q ss_pred hhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 329 VTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 329 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
+...+ .....+.+.+++.++....+.+.+...+. .. ..+.+..|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i---~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EV---EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 32222 23467999999999999888876532221 11 126677899999999865543
No 97
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=2.5e-06 Score=101.41 Aligned_cols=94 Identities=24% Similarity=0.284 Sum_probs=74.8
Q ss_pred ceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcc-ccCcccccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 594 RLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQ-ILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
.++.|+|++|.-...+|..++++++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788888888433467888888888888888888887 788888888888888888885556788888888888888888
Q ss_pred CCccccccCccCCCC
Q 044195 673 NVHSLEEMPKGFGKL 687 (1024)
Q Consensus 673 ~~~~l~~~p~~i~~l 687 (1024)
+|...+.+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 888566778776553
No 98
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.3e-06 Score=99.38 Aligned_cols=126 Identities=24% Similarity=0.289 Sum_probs=101.0
Q ss_pred cccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCC-ceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccc
Q 044195 558 FIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLP-RLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSI 636 (1024)
Q Consensus 558 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i 636 (1024)
.+...+.+..|.+.++.. .........+. +|+.|++++| .+..+|..++.+++|+.|++++|.+.++|...
T Consensus 111 ~~~~~~~l~~L~l~~n~i-------~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~ 182 (394)
T COG4886 111 ELLELTNLTSLDLDNNNI-------TDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL 182 (394)
T ss_pred hhhcccceeEEecCCccc-------ccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhh
Confidence 344556788888877651 22233335553 9999999999 79999888999999999999999999999988
Q ss_pred ccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCcc
Q 044195 637 NSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTL 693 (1024)
Q Consensus 637 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 693 (1024)
+.+++|+.|++++| .+..+|..+..+..|++|.+++|. +...+..+.++.++..|
T Consensus 183 ~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 183 SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 89999999999998 899999888888889999999996 45555556666666555
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.4e-05 Score=87.79 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=110.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE-ecCCCCHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF-VSEDFNVFRVTKSIL 260 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il 260 (1024)
+++|.+..++.|..++... .-...+.++|++|+||||+|+.+++...-...+....|.. ...+...-...+.+.
T Consensus 17 eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred hccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 5889988888888888643 2234588999999999999999886321111111100110 000111111111111
Q ss_pred HhccC-----CCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc-CCchh
Q 044195 261 KSITN-----DQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT-RNLRV 329 (1024)
Q Consensus 261 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~~ 329 (1024)
..... ........+++.. +.+.+ .+++-++|+|+++.-+...++.+...+....+.+.+|++| +...+
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 11000 0001111233332 22222 3456689999997766667777777766555566666555 33333
Q ss_pred hhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044195 330 TVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTL 390 (1024)
Q Consensus 330 ~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 390 (1024)
...+ .....+++.++++++....+...+...+. . -..+.+..|++.++|.+- |+..+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~---i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-S---VDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 12357899999999998888775432211 1 123677889999999875 44433
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.17 E-value=3e-05 Score=78.99 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=101.0
Q ss_pred cccch-hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC--CceEEEEecCCCCHHHHHHHH
Q 044195 183 VYGRE-KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF--QIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 183 ~vGr~-~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 259 (1024)
++|.. +........+.... +.....+.|+|..|+|||.|.+++++ ...... ..++|++ ..++...+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~ 79 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREF 79 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHH
Confidence 45643 33334444454442 23445689999999999999999998 333332 2455664 44555555
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCH-HHHHH-hhcCCCCC-CCCcEEEEEcCCch--------
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENY-EYWSI-FSRPFGAG-APGSKIVVTTRNLR-------- 328 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~-~~~~~-l~~~~~~~-~~gs~ilvTtR~~~-------- 328 (1024)
...+... .. ..+.+.++ .-=+|+|||++.-.. ..|.. +...+... ..|.+||+|++...
T Consensus 80 ~~~~~~~-----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 80 ADALRDG-----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHHHTT-----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHHHcc-----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 5554331 11 22334444 355899999965322 22322 22222111 24678999997532
Q ss_pred -hhhccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 329 -VTVNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 329 -~~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
...++...-++++++.++++..+++.+.+....- . --++++.-|++.+.+..-.+.-+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 1223335568999999999999999987653221 1 23477777888887766555444
No 101
>PF14516 AAA_35: AAA-like domain
Probab=98.16 E-value=0.00025 Score=77.34 Aligned_cols=199 Identities=12% Similarity=0.124 Sum_probs=118.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-----CCHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-----FNVFRVT 256 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 256 (1024)
..|.|....+++.+.|..+ ...+.|.|+..+|||+|...+.+..+. ..| ..+++++... .+...++
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred cccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHH
Confidence 4678886667777777543 258999999999999999999874322 233 4457776542 2456566
Q ss_pred HHHHHhccCCCCC-----------CCcHHHHHHHHHHHh---CCCceeEEeeccCCCC------HHHHHHhhcCCCCCC-
Q 044195 257 KSILKSITNDQSK-----------DDDLNWVQEKLKKQL---SGKKFLLVLDDVWNEN------YEYWSIFSRPFGAGA- 315 (1024)
Q Consensus 257 ~~il~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~~~~LlVlDd~~~~~------~~~~~~l~~~~~~~~- 315 (1024)
+.++..+...-.. ..........+.+.+ .+++.+|+||+++.-. .+.+..++.......
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 6555544332211 112223333444433 2689999999995421 123333333322111
Q ss_pred ---CCc-EEEEEcC-Cchhhhc-----cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044195 316 ---PGS-KIVVTTR-NLRVTVN-----MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL 385 (1024)
Q Consensus 316 ---~gs-~ilvTtR-~~~~~~~-----~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 385 (1024)
..+ ++++... ....... +.....+.|++++.+|+..|+..+-.. .. ....+.|...+||+|.
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHPY 234 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCHH
Confidence 111 2222221 1111111 112357899999999999999886322 11 1337889999999999
Q ss_pred HHHHHHhhhcCC
Q 044195 386 AAKTLGGLLRGK 397 (1024)
Q Consensus 386 ai~~~~~~l~~~ 397 (1024)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999998664
No 102
>PRK09087 hypothetical protein; Validated
Probab=98.15 E-value=2.5e-05 Score=79.86 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=87.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
.+.+.|+|++|+|||+|++.++... ...|++.. .+..+++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~---------------------~~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAAN---------------------AAAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHH---------------------hhhc-
Confidence 4678999999999999999888632 12244321 11111111 1111
Q ss_pred ceeEEeeccCCC--CHHHHHHhhcCCCCCCCCcEEEEEcCC---------chhhhccCCccceecCCCChHhHHHHHHhh
Q 044195 288 KFLLVLDDVWNE--NYEYWSIFSRPFGAGAPGSKIVVTTRN---------LRVTVNMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 288 ~~LlVlDd~~~~--~~~~~~~l~~~~~~~~~gs~ilvTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
-+|++||+... ++..+-.+...+. ..|..||+|++. +....++....+++++++++++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 28889999542 2222222222222 236679998874 223344456678999999999999999987
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 357 SLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
+.... .. --+++..-|++++.|..-++..+-
T Consensus 166 ~~~~~-~~---l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQ-LY---VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcC-CC---CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 64321 12 224777888999998887776543
No 103
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=5.2e-07 Score=89.77 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=24.2
Q ss_pred cCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCc
Q 044195 632 LPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 632 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 675 (1024)
+|-.+.-+++|..+.++.| .-+.+-.-...-+.|+++.+.+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~-~~~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSAL-STENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred cccchHHhhhhheeeeecc-chhheeceeecCchhheeeeeccc
Confidence 4444555677777877777 333332222233667777766554
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.14 E-value=1.7e-05 Score=88.28 Aligned_cols=181 Identities=15% Similarity=0.087 Sum_probs=99.8
Q ss_pred ccCccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN 251 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 251 (1024)
...++.|+++.+++|.+.+...-.. +-...+.+.|+|++|+|||++|+++++ .....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch---
Confidence 3456899999999998887543110 112346699999999999999999998 333333 22211
Q ss_pred HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CHH---HHHHhhcCCC--CCC
Q 044195 252 VFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NYE---YWSIFSRPFG--AGA 315 (1024)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~~---~~~~l~~~~~--~~~ 315 (1024)
..+.... ++ .....+...+...-...+.+|+||+++.- +.. .+..+...+. ...
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 01111112222222446789999998541 111 1222222221 112
Q ss_pred CCcEEEEEcCCchhh-hcc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 316 PGSKIVVTTRNLRVT-VNM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 316 ~gs~ilvTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
.+.+||.||...... ..+ .-...+.++..+.++..++|..++.+..- ...-. ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 467788888754321 111 12356889999999999999887643221 11112 345777777754
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5e-05 Score=87.37 Aligned_cols=197 Identities=17% Similarity=0.215 Sum_probs=112.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|-+..++.|.+++... .-...+.++|+.|+||||+|+.+++..--...... ...+.-...+.+..
T Consensus 17 dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 5889888888888888543 22467889999999999999999873211100000 00111111111111
Q ss_pred hccC-----CCCCCCcHHHHH---HHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhhh
Q 044195 262 SITN-----DQSKDDDLNWVQ---EKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVTV 331 (1024)
Q Consensus 262 ~l~~-----~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~~ 331 (1024)
.... .......++.+. ..+.. -..+++-+||||+++.-+...++.|...+........+|++|.. ..+..
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 1000 000011122211 11111 12456679999999776666777777776544345556665544 33332
Q ss_pred c-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHHHhhh
Q 044195 332 N-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP-LAAKTLGGLL 394 (1024)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 394 (1024)
. ......+++++++.++....+...+..... .. ..+.+..|++.++|.+ -|+..+...+
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 223467899999999999888875543221 11 2366788999999965 6777765544
No 106
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.6e-05 Score=87.38 Aligned_cols=197 Identities=14% Similarity=0.143 Sum_probs=111.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
++||.+..++.|..++... .-...+.++|+.|+||||+|+.++....-..... + .+.+.-...+.+..
T Consensus 14 eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~ 81 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAP 81 (584)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhc
Confidence 5899999999999998643 2334578999999999999999986321000000 0 00000011111110
Q ss_pred h---------ccCC-CCCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc-CCchh
Q 044195 262 S---------ITND-QSKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT-RNLRV 329 (1024)
Q Consensus 262 ~---------l~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~~ 329 (1024)
. +... ..+..+..++...+... ..+++-++|||+++.-+....+.|...+........+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 0000 00111112222222111 23556699999998777777888777777655566666555 43333
Q ss_pred hhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHhhh
Q 044195 330 TVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLGGLL 394 (1024)
Q Consensus 330 ~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 394 (1024)
... ......+++.+++.++..+.+...+...+. .. ..+.+..|++.++|.+- |+..+-.++
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i---~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VV---DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 224478999999999998888775433221 11 13566778999999874 555554433
No 107
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=3.3e-06 Score=100.39 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=82.0
Q ss_pred ceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcc-ccCcccccCCCCc
Q 044195 565 LRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQ-ILPQSINSLYNLH 643 (1024)
Q Consensus 565 Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~ 643 (1024)
+..|.+.++. +....+..+..+++|+.|+|++|.....+|..++.+++|++|+|++|.+. .+|..+++|++|+
T Consensus 420 v~~L~L~~n~------L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQG------LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCC------ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 5566665543 45566777888888888888888433478888888888888998888887 6788888888888
Q ss_pred EEecCCCccccccccccCCC-CcccEEeccCCccccc
Q 044195 644 TVLLEDCRRLKKLCKDMGNL-TKLHHLRNSNVHSLEE 679 (1024)
Q Consensus 644 ~L~l~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~l~~ 679 (1024)
+|++++|.....+|..++.+ .++..+++.+|..+..
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 88888886666788777653 4667788887764443
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=4.8e-05 Score=86.18 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=100.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
..-+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... .....+.+.++ +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 35689999999999999999998322111122344553 3456666666554210 11223333333 3
Q ss_pred ceeEEeeccCCCC--HHHHHHhhcCCCCC-CCCcEEEEEcCCch---------hhhccCCccceecCCCChHhHHHHHHh
Q 044195 288 KFLLVLDDVWNEN--YEYWSIFSRPFGAG-APGSKIVVTTRNLR---------VTVNMGADQAYQLKELSNDDCLCLLTQ 355 (1024)
Q Consensus 288 ~~LlVlDd~~~~~--~~~~~~l~~~~~~~-~~gs~ilvTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~~ 355 (1024)
.-+|||||+.... ....+.+...+... ..|..||+|+.... +..++...-++.+++++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4589999995432 22223333322211 23457888876532 222333456788999999999999998
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHh
Q 044195 356 ISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGG 392 (1024)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 392 (1024)
.+...+- . ..-.+++..-|++.++|.|-.+.-+..
T Consensus 287 ~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 7643221 0 123357788899999999977766543
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=8e-05 Score=87.07 Aligned_cols=192 Identities=14% Similarity=0.154 Sum_probs=108.2
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|.+..++.+..++... .-...+.++|+.|+||||+|+.++...- ..+.. ..+-.+. .......
T Consensus 19 dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~~pC~-------~C~~~~~ 84 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLLEPCQ-------ECIENVN 84 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCCCchh-------HHHHhhc
Confidence 5889999899999988643 2345678999999999999999986211 00000 0000000 0000000
Q ss_pred ----hccCCC---CCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE-EcCCchhhhc
Q 044195 262 ----SITNDQ---SKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV-TTRNLRVTVN 332 (1024)
Q Consensus 262 ----~l~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv-TtR~~~~~~~ 332 (1024)
-+.... ....++.++...+... ..+++-++|+|+++.-....+..+...+........+|+ |++...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000000 0011122222222211 235666999999977666777777776665444555554 5444444322
Q ss_pred -cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHH
Q 044195 333 -MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLG 391 (1024)
Q Consensus 333 -~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 391 (1024)
....+.+++.+++.++....+...+...+- .. ..+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~i---d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI-SY---EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 234468999999999998888765432211 11 13557789999999774 444443
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.9e-08 Score=98.63 Aligned_cols=184 Identities=16% Similarity=0.114 Sum_probs=89.0
Q ss_pred CCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC-CCcccCCCCCCCceEEEEecCCCC
Q 044195 742 VNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK-FPIWLGDFPFSKLVSLKFEYCGMC 820 (1024)
Q Consensus 742 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~ 820 (1024)
..|+.|+|+...+ ........++++..|+.|.|.|+.... +...+.. -.+|+.|+|+.|...
T Consensus 185 sRlq~lDLS~s~i---------------t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk--N~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI---------------TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK--NSNLVRLNLSMCSGF 247 (419)
T ss_pred hhhHHhhcchhhe---------------eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc--cccceeecccccccc
Confidence 4577777776654 123344456667777777777665422 1112221 356777777776655
Q ss_pred CCCC---CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccc-cccccccccccccccCcccceee
Q 044195 821 TSLP---SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEW-EEWIPRGFAQEVNEVFPKLRKLS 896 (1024)
Q Consensus 821 ~~l~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~ 896 (1024)
+... .+.++..|..|+|+.|............ ..-++|+.|+++++..- .......+... +|+|..|+
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~sh~~tL~~r----cp~l~~LD 319 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKSHLSTLVRR----CPNLVHLD 319 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhhHHHHHHHh----CCceeeec
Confidence 4432 3455666666666666433222111100 01244555555554221 11111111111 44555555
Q ss_pred eccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCcCEEEEccCCCcc---ccCCCCCCCccEEEEcCCCCc
Q 044195 897 LLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVV---FSSPIDFSSLKSVFLGDIANQ 968 (1024)
Q Consensus 897 l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~---~~~~~~l~~L~~L~l~~c~~l 968 (1024)
+++|-.++. .....+-.++.|++|.++.|..+. .+.....|+|.+|++.+|-.-
T Consensus 320 LSD~v~l~~------------------~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 320 LSDSVMLKN------------------DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred cccccccCc------------------hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 555443331 112345556677777777776442 112245567777777766433
No 111
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.09 E-value=8.5e-06 Score=87.10 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC--CHHHHHHHHHHhccCCCCC
Q 044195 192 AIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF--NVFRVTKSILKSITNDQSK 269 (1024)
Q Consensus 192 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~ 269 (1024)
++++++..- +......|+|++|+||||||+++|++.... +|+..+||.+.+.. +..++++.+...+-....+
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455555432 345678899999999999999999964433 89999999998877 7788888886443322222
Q ss_pred CCcHH------HHHHHHHHH-hCCCceeEEeeccCC
Q 044195 270 DDDLN------WVQEKLKKQ-LSGKKFLLVLDDVWN 298 (1024)
Q Consensus 270 ~~~~~------~~~~~l~~~-l~~~~~LlVlDd~~~ 298 (1024)
..... ......... -.++.++|++|++..
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11111 111111111 367999999999943
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=8.5e-05 Score=83.10 Aligned_cols=184 Identities=15% Similarity=0.223 Sum_probs=104.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh------hccCCceEE-EEecCCCCHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV------QRRFQIKAW-TFVSEDFNVFR 254 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~------~~~f~~~~w-v~~~~~~~~~~ 254 (1024)
+++|.+..++.+..++... .-.+.+.++|++|+|||++|+.+++.... ...|...+. +......+. +
T Consensus 18 ~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 91 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-D 91 (367)
T ss_pred hcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-H
Confidence 4899999999999988643 23468889999999999999999763211 011211111 111111111 1
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc-CCchhhhc-
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT-RNLRVTVN- 332 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~~~~~- 332 (1024)
..+.+++++... -..+++-++|+|++..-....++.+...+........+|++| ....+...
T Consensus 92 ~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 92 DIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred HHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 111111111100 112455689999996655555666655554333445555555 33333222
Q ss_pred cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHH
Q 044195 333 MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLG 391 (1024)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 391 (1024)
......++++++++++....+...+...+- .. ..+.++.|++.++|.+- |+..+-
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KF---EDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhCCCCHHHHHHHHH
Confidence 123357899999999999888876543221 11 13677889999999765 444333
No 113
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.08 E-value=4.4e-06 Score=65.66 Aligned_cols=58 Identities=31% Similarity=0.390 Sum_probs=51.7
Q ss_pred CCCcEeeccCCCccccCc-ccccCCCCcEEecCCCcccccccc-ccCCCCcccEEeccCCc
Q 044195 617 KHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 617 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 675 (1024)
++|++|++++|.++.+|. .+..+++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999999999985 6789999999999998 7777765 68999999999999986
No 114
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=9.7e-08 Score=94.98 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=117.5
Q ss_pred cCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC-Cccc
Q 044195 723 SLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF-PIWL 801 (1024)
Q Consensus 723 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~ 801 (1024)
++.+.......+...+..|.+|+.|+|.++.. ++.+...+.+..+|+.|+|+++.+.+- ....
T Consensus 191 DLS~s~it~stl~~iLs~C~kLk~lSlEg~~L----------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 191 DLSNSVITVSTLHGILSQCSKLKNLSLEGLRL----------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hcchhheeHHHHHHHHHHHHhhhhcccccccc----------------CcHHHHHHhccccceeeccccccccchhHHHH
Confidence 34444455666777788999999999998876 556677788899999999999876432 1111
Q ss_pred CCCCCCCceEEEEecCCCCCCCC--CC-CCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccccc
Q 044195 802 GDFPFSKLVSLKFEYCGMCTSLP--SV-GQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIP 878 (1024)
Q Consensus 802 ~~~~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 878 (1024)
...+++.|.+|+|++|......- .+ .--++|..|+|+||...-... ... .....+|+|..|+++++..+..-..
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--h~~-tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--HLS-TLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--HHH-HHHHhCCceeeeccccccccCchHH
Confidence 11258999999999998765422 11 123789999999985321110 000 1123489999999999988877444
Q ss_pred ccccccccccCcccceeeeccCcCCcccCC------CCCCCccEEEEecc
Q 044195 879 RGFAQEVNEVFPKLRKLSLLRCSKLQGTLP------ERLLLLEKLVIQSC 922 (1024)
Q Consensus 879 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp------~~l~~L~~L~l~~c 922 (1024)
..+.. |+.|++|.++.|-. .+| ...|+|.+|++.+|
T Consensus 332 ~~~~k-----f~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 332 QEFFK-----FNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHh-----cchheeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence 33333 89999999999932 234 24577777777766
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.06 E-value=2.4e-05 Score=79.24 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEE-EEecCCCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAW-TFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i 259 (1024)
.+++|-+..++.+.+.+.. ....+...+|++|.|||+-|++++...--...|.+++- .++|....+. +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4588999989999888864 35578999999999999999998873222344555443 2333322211 1000
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHh--CCCc-eeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hhhcc-C
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQL--SGKK-FLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VTVNM-G 334 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~~~-~ 334 (1024)
...+...+.....+.. .-++ =.||||+++.-..+.|..+...+......++.|+.+..-. +...+ .
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0111111111110000 1123 3889999988888899999888777666677666554422 21111 2
Q ss_pred CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 335 ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 335 ~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
...-++.++|.+++...-+...+-..+- +-..+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcH
Confidence 3356889999999998888776643322 222366778999999854
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=9.1e-05 Score=87.32 Aligned_cols=193 Identities=15% Similarity=0.208 Sum_probs=110.7
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
++||-+..++.|..++... .-...+.++|+.|+||||+|+.++.......... .....+.....+.+..
T Consensus 17 eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 5899999999998888643 2335678999999999999999986221000000 0011111222233322
Q ss_pred hccCC-----CCCCCcHHHHHHHHHHH-----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhh
Q 044195 262 SITND-----QSKDDDLNWVQEKLKKQ-----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVT 330 (1024)
Q Consensus 262 ~l~~~-----~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~ 330 (1024)
..+.. .......+.+.. +.+. ..+++-++|||+++.-+....+.+...+......+.+|+++.+ ..+.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 21110 001122222222 2221 1245669999999766666677776666554455666666543 2222
Q ss_pred hc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 331 VN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
.. ......+.+.+++.++....+...+...+. .. ..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NL---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 21 123357889999999998888776543221 11 2366788999999998654433
No 117
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=2.2e-05 Score=84.96 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred ccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCC
Q 044195 777 MLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCS 856 (1024)
Q Consensus 777 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 856 (1024)
-+..+.+++.|++++|....+|. + .++|+.|.+++|..+..+|..- .++|+.|.+++|..+..+
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~-L----P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL---------- 110 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPV-L----PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL---------- 110 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCC-C----CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc----------
Confidence 34556888999999888888882 1 3468999998888777776311 357888888888655433
Q ss_pred CCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCC-cccCCCCC-CCccEEEEecccCc--cccCCCC
Q 044195 857 APFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKL-QGTLPERL-LLLEKLVIQSCKQL--LVTIQCL 932 (1024)
Q Consensus 857 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~lp~~l-~~L~~L~l~~c~~l--~~~l~~l 932 (1024)
.++|+.|.+.+ .....+. .- .++|+.|.+.++... ...+|..+ ++|+.|.+++|..+ |..++
T Consensus 111 --P~sLe~L~L~~-n~~~~L~-----~L----PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP-- 176 (426)
T PRK15386 111 --PESVRSLEIKG-SATDSIK-----NV----PNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP-- 176 (426)
T ss_pred --ccccceEEeCC-CCCcccc-----cC----cchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--
Confidence 34566666543 2211111 00 356777776433111 11222222 45777777666533 22222
Q ss_pred CCcCEEEEccC
Q 044195 933 PALSELQIRGC 943 (1024)
Q Consensus 933 ~~L~~L~l~~~ 943 (1024)
.+|+.|.++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 46666666554
No 118
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=7.9e-05 Score=89.78 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=108.7
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC---------------------Cc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF---------------------QI 240 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---------------------~~ 240 (1024)
++||.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-.... ..
T Consensus 16 eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 5899999999999998643 223467899999999999999998632111100 01
Q ss_pred eEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHH---HHH-HHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCC
Q 044195 241 KAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQE---KLK-KQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAP 316 (1024)
Q Consensus 241 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~---~l~-~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~ 316 (1024)
+++++.... ..++++.. .+. .-..++.-++|||+++.-+...++.|...+.....
T Consensus 91 v~eidaas~---------------------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 91 VTEIDAASH---------------------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred EEEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 112211111 11222222 111 11245566899999988777788888877776556
Q ss_pred CcEEEEEcCC-chhhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 317 GSKIVVTTRN-LRVTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 317 gs~ilvTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
.+.+|++|.+ ..+...+ .....|++..++.++...++.+.+-..+ ... ..+....|++.++|.+..+
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHH
Confidence 6666665543 3333222 2456899999999999888876542211 111 2355677999999988433
No 119
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=6.3e-07 Score=91.79 Aligned_cols=256 Identities=21% Similarity=0.184 Sum_probs=128.2
Q ss_pred hhhhCCCCceEEEEeCCCCCccc-----CCccccCCCCCcEeeccCC---Cc-cccCcc-------cccCCCCcEEecCC
Q 044195 586 LQLLLDLPRLRVFSLCGYCNIID-----LPNEIGNLKHLRFLNLSRT---NI-QILPQS-------INSLYNLHTVLLED 649 (1024)
Q Consensus 586 ~~~l~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~~---~i-~~lp~~-------i~~L~~L~~L~l~~ 649 (1024)
.+.+..+..++.++|++| .+.. +-..+.+.++|+.-+++.- +. .++|+. +...++|++||||.
T Consensus 23 ~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 344466677777777777 3432 3344556667777777652 11 244543 33456788888887
Q ss_pred Cccccccc----cccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccC
Q 044195 650 CRRLKKLC----KDMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSL 724 (1024)
Q Consensus 650 ~~~l~~lp----~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l 724 (1024)
|-.-...+ .-+.++..|++|.+.+|. ++..... ++ ..|..|. + .+..++-+.|+ .+...+.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~--~al~~l~---~-------~kk~~~~~~Lr-v~i~~rN 167 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG--RALFELA---V-------NKKAASKPKLR-VFICGRN 167 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH--HHHHHHH---H-------HhccCCCcceE-EEEeecc
Confidence 74332222 235567888888888876 4322111 11 1122221 0 00111112222 2222222
Q ss_pred CCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccC--
Q 044195 725 ENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLG-- 802 (1024)
Q Consensus 725 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~-- 802 (1024)
..-......+...++..+.|+.+.+..|.+.. .........+..+++|+.|+|..|.++.-.....
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~------------eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRP------------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccC------------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 11112223344456666777777777766511 1122345566777778888887776543211100
Q ss_pred -CCCCCCceEEEEecCCCCCC----CC--CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccc
Q 044195 803 -DFPFSKLVSLKFEYCGMCTS----LP--SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNM 870 (1024)
Q Consensus 803 -~~~l~~L~~L~L~~~~~~~~----l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 870 (1024)
-..+++|+.|++++|..... +. .-...|+|+.|.+.+|.-...-...... ....-|.|+.|+++++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~--~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA--CMAEKPDLEKLNLNGN 308 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH--HHhcchhhHHhcCCcc
Confidence 01256777888888764321 00 1133677888887776432221111110 1122577777777764
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00014 Score=82.85 Aligned_cols=182 Identities=14% Similarity=0.159 Sum_probs=106.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh--h-----------------ccCCceE
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV--Q-----------------RRFQIKA 242 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~-----------------~~f~~~~ 242 (1024)
+++|-+..+..+.+++... .-...+.++|+.|+||||+|+.++....- . ..|...+
T Consensus 17 diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 5889999999999998643 22346678999999999999998762110 0 0111122
Q ss_pred EEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEE
Q 044195 243 WTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIV 321 (1024)
Q Consensus 243 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~il 321 (1024)
+++.+..... .+...+...+... ..+++-++|+|+++.-+....+.+...+........+|
T Consensus 92 eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 92 EIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 2222111111 1111222222111 23566799999997666666677766665544455555
Q ss_pred EEc-CCchhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 322 VTT-RNLRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 322 vTt-R~~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
++| +...+... ......+.+.+++.++....+...+-..+- . -..+.+..|++.++|.+-.+...
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~---id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-E---YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 43333222 123457899999999998888776533221 1 12366677899999987644443
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.04 E-value=0.00015 Score=75.10 Aligned_cols=198 Identities=15% Similarity=0.120 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc----cCCceEEEEecCCCCHHHHHHHHHHhc
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR----RFQIKAWTFVSEDFNVFRVTKSILKSI 263 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (1024)
+.++++.+++..+ .....+.+.|+|.+|.|||++++.++...-... .--.++.|.....++...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 4566777777655 345667899999999999999999986321111 112577888889999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCC-CceeEEeeccCCC------CHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhcc---
Q 044195 264 TNDQSKDDDLNWVQEKLKKQLSG-KKFLLVLDDVWNE------NYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNM--- 333 (1024)
Q Consensus 264 ~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDd~~~~------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~--- 333 (1024)
+.+.........+...+...++. +--+||||++++- .+...-.....+...-.=+-|.|-|++-.-+-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 99887666666666666666654 4559999999651 1111222222232222334556655532111111
Q ss_pred --CCccceecCCCCh-HhHHHHHHhhh--cCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 334 --GADQAYQLKELSN-DDCLCLLTQIS--LGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 334 --~~~~~~~l~~L~~-~ea~~lf~~~a--~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
.....+.++.-.. +|...|+.+.. ..-.. ...-..+++++.|...++|+.--+..
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 1224455555444 44555655432 11111 12234468899999999998754433
No 122
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=3e-05 Score=84.01 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=26.0
Q ss_pred CCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccc
Q 044195 806 FSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEW 873 (1024)
Q Consensus 806 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 873 (1024)
+.+++.|++++| .+..+|.+ .++|+.|.+++|..+..++..+ .++|+.|.+++|.++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--------P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVL--PNELTEITIENCNNLTTLPGSI--------PEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCC--CCCCcEEEccCCCCcccCCchh--------hhhhhheEccCcccc
Confidence 345555555555 23444411 1235555555555544443211 235555555554443
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.03 E-value=0.00024 Score=71.38 Aligned_cols=266 Identities=17% Similarity=0.189 Sum_probs=138.7
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+|||-+..++++.=++..... .++.+-.|.++|++|.||||||.-+++ .....+.. ..+....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~----tsGp~le--------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI----TSGPALE--------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe----ccccccc---------
Confidence 4699999999998878776543 456778999999999999999999998 33333311 1000000
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCC--------CCCCcEE-----------E
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGA--------GAPGSKI-----------V 321 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~--------~~~gs~i-----------l 321 (1024)
...++...+ ..++ +.-++++|.++.-....-+.+..++.+ .++++|. =
T Consensus 90 -----------K~gDlaaiL-t~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 90 -----------KPGDLAAIL-TNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred -----------ChhhHHHHH-hcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 011111111 1111 334667788765444333333332221 1233332 2
Q ss_pred EEcCCchhhhccC--CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCC
Q 044195 322 VTTRNLRVTVNMG--ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHD 399 (1024)
Q Consensus 322 vTtR~~~~~~~~~--~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~ 399 (1024)
-|||--.+...+. -.-+.+++--+.+|-.++..+.|.. .+.. -.++.+.+|+++..|-|--..-+-+..+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~---i~~~~a~eIA~rSRGTPRIAnRLLrRVR---- 228 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIE---IDEEAALEIARRSRGTPRIANRLLRRVR---- 228 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCC---CChHHHHHHHHhccCCcHHHHHHHHHHH----
Confidence 4777543332221 1135677777888888888876532 1111 2237788999999999954433333322
Q ss_pred hhHHHHHHhccccCCCCC-CCChhhHHHhhhcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHH
Q 044195 400 PRDWEFVLNNDICNLPEE-NCNIIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMED 478 (1024)
Q Consensus 400 ~~~w~~~l~~~~~~~~~~-~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~ 478 (1024)
++..+-... .+... .......|.+-=..|....++.+..+.-.+.|-++..+.+.... | ....+.||
T Consensus 229 --Dfa~V~~~~--~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~l---g-----e~~~TiEd 296 (332)
T COG2255 229 --DFAQVKGDG--DIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAAL---G-----EDRDTIED 296 (332)
T ss_pred --HHHHHhcCC--cccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHh---c-----CchhHHHH
Confidence 222221110 00000 01122233333344555555555555544445555555543221 1 12245566
Q ss_pred HHHHHHHHHHhcCCccccCC
Q 044195 479 LGREFVQELLSRSFFQRSSK 498 (1024)
Q Consensus 479 ~~~~~~~~Lv~~~l~~~~~~ 498 (1024)
+.+=| |++.+++++..+
T Consensus 297 v~EPy---Liq~gfi~RTpR 313 (332)
T COG2255 297 VIEPY---LIQQGFIQRTPR 313 (332)
T ss_pred HHhHH---HHHhchhhhCCC
Confidence 55544 678899988764
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=9.3e-05 Score=86.28 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=110.0
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE-ecCCCCHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF-VSEDFNVFRVTKSIL 260 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il 260 (1024)
++||-+..+..|.+++... .-...+.++|+.|+||||+|+.+++..-.....+...|.. +....+.....+.+.
T Consensus 17 eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 5899998888898888543 2335688999999999999999886321111111001110 000111111111111
Q ss_pred HhccC-----CCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc-CCchhh
Q 044195 261 KSITN-----DQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT-RNLRVT 330 (1024)
Q Consensus 261 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~~~ 330 (1024)
..-.. ........+++...+... +.+++-++|+|+++.-+....+.+...+......+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 10000 000111133333322222 24556689999997766666777777776554455555544 433333
Q ss_pred hc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044195 331 VN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTL 390 (1024)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 390 (1024)
.. ......+++.+++.++....+.+.+...+. .. ..+.+..|++.++|..- |+..+
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I---~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QI---DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 22 234578999999999988887765432111 11 23677889999999664 44433
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.01 E-value=8.5e-05 Score=78.47 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=82.1
Q ss_pred ccccchhhHHHHHHHHHhC---------CCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCH
Q 044195 182 KVYGREKDKEAIVELLLRD---------GLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNV 252 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 252 (1024)
.++|.+..+++|.+..... +....+....+.++|++|+||||+|+.++.............++.+...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4788887776665433221 1112234567889999999999999999863211111111123333221
Q ss_pred HHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC--------HHHHHHhhcCCCCCCCCcEEEEEc
Q 044195 253 FRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN--------YEYWSIFSRPFGAGAPGSKIVVTT 324 (1024)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~--------~~~~~~l~~~~~~~~~gs~ilvTt 324 (1024)
++. ....+ .........+.+. ..-+|+||+++.-. .+..+.+...+........+|+++
T Consensus 84 -~l~----~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 11100 0111122222221 23589999995411 223444554444433334555665
Q ss_pred CCchhhh------cc-CC-ccceecCCCChHhHHHHHHhhhc
Q 044195 325 RNLRVTV------NM-GA-DQAYQLKELSNDDCLCLLTQISL 358 (1024)
Q Consensus 325 R~~~~~~------~~-~~-~~~~~l~~L~~~ea~~lf~~~a~ 358 (1024)
....... .+ .. ...+.+++++.++..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4432211 11 11 24578999999999999987653
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.01 E-value=0.0001 Score=80.77 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=84.3
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|.+...+.+..++... .-..++.++|++|+|||++|+.+++. ... ....++.+. .. ...+++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-cc-HHHHHHHH
Confidence 45899999999999998643 23467778999999999999999873 221 233444443 11 11111111
Q ss_pred HhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCCC-CHHHHHHhhcCCCCCCCCcEEEEEcCCchh-hhcc-CCc
Q 044195 261 KSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAGAPGSKIVVTTRNLRV-TVNM-GAD 336 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~-~~~~-~~~ 336 (1024)
... ... .+.+.+-++||||+... .....+.+...+.....++++|+||..... ...+ ...
T Consensus 89 ~~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111 000 01234568999999654 222333444434444456788888865321 1111 122
Q ss_pred cceecCCCChHhHHHHHHh
Q 044195 337 QAYQLKELSNDDCLCLLTQ 355 (1024)
Q Consensus 337 ~~~~l~~L~~~ea~~lf~~ 355 (1024)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4567777777777666543
No 127
>PRK06620 hypothetical protein; Validated
Probab=97.99 E-value=0.00011 Score=74.29 Aligned_cols=138 Identities=11% Similarity=0.022 Sum_probs=81.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
+.+.|+|++|+|||+|++++++.. .. .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 679999999999999999988732 11 1211 00000 0 011 133
Q ss_pred eeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh-------hhccCCccceecCCCChHhHHHHHHhhhcCCC
Q 044195 289 FLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV-------TVNMGADQAYQLKELSNDDCLCLLTQISLGTG 361 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~-------~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~ 361 (1024)
-++++||++.......-.+...+. ..|..||+|++.... ..++....++.++++++++...++.+.+...
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~- 163 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS- 163 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-
Confidence 578999995322112222221121 246689999885432 2223345589999999999888887765422
Q ss_pred CCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 362 DFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
... -.+++.+-|++++.|.--.+.-+
T Consensus 164 ~l~---l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 164 SVT---ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CCC---CCHHHHHHHHHHccCCHHHHHHH
Confidence 111 22477778888888765544433
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00015 Score=85.02 Aligned_cols=195 Identities=14% Similarity=0.201 Sum_probs=109.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|.+..+..|..++... .-...+.++|+.|+||||+|+.++...-- ........ .........+.+..
T Consensus 17 ~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~~~----~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 17 ELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKPTP----EPCGKCELCRAIAA 86 (620)
T ss_pred hccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCCCC----CCCcccHHHHHHhc
Confidence 5889999999999988653 22357889999999999999999873211 11110000 01111122222222
Q ss_pred hccC-----CCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhh
Q 044195 262 SITN-----DQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTV 331 (1024)
Q Consensus 262 ~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~ 331 (1024)
.... ........+.+...+... ..+++-++|||+++.-+...++.+...+........+|++|.+. .+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 1111 000112222222222111 13456689999997766667777777666544455555555432 2222
Q ss_pred c-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 332 N-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
. ......+.+.+++.++....+...+...+. ... .+.+..|++.++|.+..+...
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 223467888899999888877765432211 111 256778999999988644433
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00015 Score=82.18 Aligned_cols=182 Identities=15% Similarity=0.188 Sum_probs=106.6
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc---------------------cCCc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR---------------------RFQI 240 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~f~~ 240 (1024)
+++|.+..+..+.+++... .-...+.++|++|+||||+|+.++...--.. +++
T Consensus 18 diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 5899999999999988643 2235788999999999999999876211000 011
Q ss_pred eEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcE
Q 044195 241 KAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSK 319 (1024)
Q Consensus 241 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ 319 (1024)
.+++........ .+...+...+.. ...+++-++|+|++..-.....+.+...+.....+..
T Consensus 92 ~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 111111111111 111111111111 1235677899999966555556666666665445666
Q ss_pred EEEEcCC-chhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHH
Q 044195 320 IVVTTRN-LRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLG 391 (1024)
Q Consensus 320 ilvTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 391 (1024)
+|++|.. ..+... ......++++++++++....+...+-..+. . -..+.+..|++.++|.+- |+..+-
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~---i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-E---TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666643 222221 123467899999999998888775432211 1 123667889999999764 444443
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00021 Score=81.34 Aligned_cols=179 Identities=14% Similarity=0.170 Sum_probs=109.4
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh--hcc----------------CC-ceE
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV--QRR----------------FQ-IKA 242 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~~~----------------f~-~~~ 242 (1024)
++||-+..++.+..++... .-..+..++|+.|+||||+|+.++...-- ... +. .++
T Consensus 15 eiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 5899888888998888543 23456689999999999999988762100 000 11 111
Q ss_pred EEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCc
Q 044195 243 WTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGS 318 (1024)
Q Consensus 243 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs 318 (1024)
.++.+.. ...+.+...+... ..+++-++|+|+++.-+.+..+.+...+......+
T Consensus 90 eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t 148 (535)
T PRK08451 90 EMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYV 148 (535)
T ss_pred Eeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCce
Confidence 2211111 1122222222211 12456699999998777777777777666555567
Q ss_pred EEEEEcCCc-hhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 319 KIVVTTRNL-RVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 319 ~ilvTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
++|++|.+. .+... ......+++.+++.++....+...+...+- .. .++.+..|++.++|.+--+...
T Consensus 149 ~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 149 KFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 777766553 22211 123468999999999998888765433221 11 2367788999999998544433
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.93 E-value=8.4e-05 Score=90.84 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=85.4
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc------CCceEE-EEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR------FQIKAW-TFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~w-v~~~~~~~~~ 253 (1024)
..+|||+.++.+++..|... ...-+.++|++|+||||+|+.++. ++... ....+| ++.+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l---- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLL---- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhh----
Confidence 45899999999999998654 234567999999999999999997 33211 122333 222210
Q ss_pred HHHHHHHHhccCCCCCCCcHH-HHHHHHHHHh-CCCceeEEeeccCCCC-------HHHH-HHhhcCCCCCCCCcEEEEE
Q 044195 254 RVTKSILKSITNDQSKDDDLN-WVQEKLKKQL-SGKKFLLVLDDVWNEN-------YEYW-SIFSRPFGAGAPGSKIVVT 323 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~-~~~~~l~~~l-~~~~~LlVlDd~~~~~-------~~~~-~~l~~~~~~~~~gs~ilvT 323 (1024)
..+. ....+.+ .+...+...- .+.+.+|+||+++.-. ..+. +.+...+..+ .-++|-|
T Consensus 255 ---------~ag~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 255 ---------QAGA-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ---------hccc-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 0000 0111111 1222222221 2468999999985421 1111 1233333321 2456666
Q ss_pred cCCchhhh-------ccCCccceecCCCChHhHHHHHHhh
Q 044195 324 TRNLRVTV-------NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 324 tR~~~~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
|...+... .....+.+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 66532211 1124468999999999999997544
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=97.93 E-value=0.00035 Score=74.19 Aligned_cols=135 Identities=14% Similarity=0.063 Sum_probs=72.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
...+.++|++|+|||++|+.++........-...-|+.++. .++ .....+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc---c
Confidence 34588999999999999999987321111111122444441 122 22221111 11112222222 2
Q ss_pred ceeEEeeccCCC---------CHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhcc--------CCccceecCCCChHhHH
Q 044195 288 KFLLVLDDVWNE---------NYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNM--------GADQAYQLKELSNDDCL 350 (1024)
Q Consensus 288 ~~LlVlDd~~~~---------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~--------~~~~~~~l~~L~~~ea~ 350 (1024)
.-+|+||++..- ..+..+.+...+.....+.+||+++......... .-...+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999531 1223344444444444456777777543321111 12347899999999999
Q ss_pred HHHHhhhc
Q 044195 351 CLLTQISL 358 (1024)
Q Consensus 351 ~lf~~~a~ 358 (1024)
+++...+.
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99887754
No 133
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.91 E-value=2.3e-05 Score=84.44 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=63.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC--CCHHHHHHHHHHhccCCCCCCCcHH------HHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED--FNVFRVTKSILKSITNDQSKDDDLN------WVQE 278 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 278 (1024)
....++|+|++|+|||||++.+++... ..+|+..+||.+.+. .+..++++.++..+-...-+..... .+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 446899999999999999999998543 337999999998865 7889999998655543332211111 1112
Q ss_pred HHHHH-hCCCceeEEeeccCC
Q 044195 279 KLKKQ-LSGKKFLLVLDDVWN 298 (1024)
Q Consensus 279 ~l~~~-l~~~~~LlVlDd~~~ 298 (1024)
..... -++++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 368999999999944
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.91 E-value=0.00032 Score=70.20 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=71.9
Q ss_pred ccccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHH
Q 044195 177 LVNEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 177 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (1024)
...-..++|.+.+++.|++-...-- .+....-|.+||..|+|||++++++.+...-+. .--|.+.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH--------
Confidence 3445679999999888866443322 123445788899999999999999987321111 11122221
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCC-CCHHHHHHhhcCCCCC----CCCcEEEEEcCCchh
Q 044195 257 KSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWN-ENYEYWSIFSRPFGAG----APGSKIVVTTRNLRV 329 (1024)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~-~~~~~~~~l~~~~~~~----~~gs~ilvTtR~~~~ 329 (1024)
..-.+...+.+.++ -...||+|++||+.= .....+..+.+.+..+ ..+..|-.||..++.
T Consensus 89 -----------~~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -----------HHhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 11223333333333 145799999999832 3334566666555433 233344455555444
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=57.82 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCcEeeccCCCccccCcccccCCCCcEEecCCC
Q 044195 618 HLRFLNLSRTNIQILPQSINSLYNLHTVLLEDC 650 (1024)
Q Consensus 618 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~ 650 (1024)
+|++|++++|.|+.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555544555555555555555
No 136
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.89 E-value=7e-05 Score=83.62 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=96.6
Q ss_pred cCccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNV 252 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 252 (1024)
..++.|+++.++++.+.+..+-.. +-..++-|.++|++|+|||++|+++++ +.... |+.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----
Confidence 346899999999998877432110 123456799999999999999999998 33222 222211
Q ss_pred HHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CHHHHHHh---hcCCCC--CCC
Q 044195 253 FRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NYEYWSIF---SRPFGA--GAP 316 (1024)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~~~~~~l---~~~~~~--~~~ 316 (1024)
.++ .....+ .....+...+...-...+.+|+|||++.- +......+ ...+.. ...
T Consensus 199 ~~l----~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SEL----VQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHH----hHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 111110 01111112222222456789999999531 11111222 211111 123
Q ss_pred CcEEEEEcCCchhh-hcc---C-CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC
Q 044195 317 GSKIVVTTRNLRVT-VNM---G-ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL 383 (1024)
Q Consensus 317 gs~ilvTtR~~~~~-~~~---~-~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 383 (1024)
+..||.||...... ..+ + -...+.+++.+.++..++|..+..+.. ....-. ...+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~-~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN-LADDVD----LEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC-CCCcCC----HHHHHHHcCCC
Confidence 56777777754321 111 1 234688999999999999988754321 111122 24466667664
No 137
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=7.5e-05 Score=81.99 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=76.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.++++.+...+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.++...+..+++...-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788889999998888643 5788999999999999999998543345677888999998888777654221
Q ss_pred HhccCCCCCCCc-HHHHHHHHHHHh--CCCceeEEeeccCCCCHHH-HHHhhcCCC
Q 044195 261 KSITNDQSKDDD-LNWVQEKLKKQL--SGKKFLLVLDDVWNENYEY-WSIFSRPFG 312 (1024)
Q Consensus 261 ~~l~~~~~~~~~-~~~~~~~l~~~l--~~~~~LlVlDd~~~~~~~~-~~~l~~~~~ 312 (1024)
- ...+-.- ..-..+.+.+.. .++++++|||++...+... +..+...+.
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1 0000000 011122233322 2478999999996654332 444444333
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.3e-05 Score=57.42 Aligned_cols=41 Identities=37% Similarity=0.505 Sum_probs=30.1
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCc
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQ 634 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~ 634 (1024)
++|++|++++| .+.++|..+++|++|++|++++|.++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46788888888 688887778888888888888888776653
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00031 Score=82.59 Aligned_cols=175 Identities=16% Similarity=0.186 Sum_probs=108.0
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh---------------------hccCCc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV---------------------QRRFQI 240 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---------------------~~~f~~ 240 (1024)
+++|.+..++.|..++... .-...+.++|+.|+||||+|+.++....- ..+|+
T Consensus 18 ~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n- 91 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN- 91 (614)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-
Confidence 5899999999999998643 23456889999999999999988762110 01122
Q ss_pred eEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCC
Q 044195 241 KAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAP 316 (1024)
Q Consensus 241 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~ 316 (1024)
+..++.+... ..+.+...+.+. +.+++-++|||++..-+...++.+...+.....
T Consensus 92 ~~~ld~~~~~---------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 92 IHELDAASNN---------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred eEEecccccC---------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 1122221111 122222222111 124455889999977777777888777765545
Q ss_pred CcEEEEEc-CCchhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 317 GSKIVVTT-RNLRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 317 gs~ilvTt-R~~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
++.+|++| +...+... ......+++.+++.++....+.+.+...+- .. ..+.+..|++.++|..--+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 66655544 44444332 234467999999999999888875433221 11 1256788999999977533
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.86 E-value=0.00028 Score=75.09 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=72.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
.-+.++|++|+|||++|+.++............-|+.++. .+ ++..+.+.. .......+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cC
Confidence 3688999999999999988876221111111122444442 12 222222211 11122222222 33
Q ss_pred eeEEeeccCCC---------CHHHHHHhhcCCCCCCCCcEEEEEcCCchhhhcc--------CCccceecCCCChHhHHH
Q 044195 289 FLLVLDDVWNE---------NYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNM--------GADQAYQLKELSNDDCLC 351 (1024)
Q Consensus 289 ~LlVlDd~~~~---------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~--------~~~~~~~l~~L~~~ea~~ 351 (1024)
-+|+||++..- ..+.++.+...+.....+.+||+++......... .-...+.+++++.+|...
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999999521 1223445555554444556777776543221111 112468999999999999
Q ss_pred HHHhhhc
Q 044195 352 LLTQISL 358 (1024)
Q Consensus 352 lf~~~a~ 358 (1024)
++...+.
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9887653
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.85 E-value=0.00012 Score=89.06 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=85.7
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh---hccC-CceEEEEecCCCCHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV---QRRF-QIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~f-~~~~wv~~~~~~~~~~~~~ 257 (1024)
.++||+.++++++..|... ...-+.++|++|+|||++|+.++..... ...+ ...+|.. +...+
T Consensus 183 ~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l-- 249 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL-- 249 (731)
T ss_pred cccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH--
Confidence 5899999999999988654 2345679999999999999999973211 1111 2334321 11111
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccCCC---------CHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVWNE---------NYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~~~---------~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
+. +.. ...+.++....+.+.+ +.++.+|+||+++.- ..+..+.+...+..+ .-++|-+|...
T Consensus 250 --~a---~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~ 321 (731)
T TIGR02639 250 --LA---GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYE 321 (731)
T ss_pred --hh---hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHH
Confidence 10 000 1112222222233322 346889999999521 111223344433321 23455555532
Q ss_pred hhhh-------ccCCccceecCCCChHhHHHHHHhhh
Q 044195 328 RVTV-------NMGADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 328 ~~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
+... .....+.+.+++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2111 11234578999999999999998643
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00045 Score=80.24 Aligned_cols=191 Identities=16% Similarity=0.112 Sum_probs=110.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|-+..+..+..++... .-...+.++|+.|+||||+|+.++...-....... ..+... ..-+.+..
T Consensus 17 diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~~ 84 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSIDN 84 (563)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHHc
Confidence 5899999999999999643 23457889999999999999999873211100000 000000 00011111
Q ss_pred hccC-----CCCCCCcHHHHHHHH---HH-HhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhhh
Q 044195 262 SITN-----DQSKDDDLNWVQEKL---KK-QLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVTV 331 (1024)
Q Consensus 262 ~l~~-----~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~~ 331 (1024)
.-.. ........+.+.... .. -..+++-++|+|+++.-+...++.+...+........+|++|.. ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 0000 000011222222211 11 12456668999999777777778887777655556666666543 33322
Q ss_pred c-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 332 N-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
. ......+++.+++.++....+...+...+- . -.++.+..|++.++|.+-.+.
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~---id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-K---YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 2 123457899999999998888876543221 1 223667789999999885443
No 143
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00052 Score=73.80 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=111.4
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh-------------hccCCceEEEEecC
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV-------------QRRFQIKAWTFVSE 248 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-------------~~~f~~~~wv~~~~ 248 (1024)
+++|.+..++.+...+... .-.....++|+.|+||+++|..++...-- ....+...|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 5889999999999988654 23468999999999999999888752100 11223344543210
Q ss_pred CCCHHHHHHHHHHhccC--CCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEE
Q 044195 249 DFNVFRVTKSILKSITN--DQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIV 321 (1024)
Q Consensus 249 ~~~~~~~~~~il~~l~~--~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~il 321 (1024)
..+-..+-..-++..+. .....-.++++ +.+.+.+ .+.+-++|+|++..-+....+.+...+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000000011111110 00111122222 2333333 3566799999997766667777766665443 34455
Q ss_pred EEcC-Cchhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 322 VTTR-NLRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 322 vTtR-~~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
++|. ...+... ....+.+++.++++++..+.+........ .......++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 4444 3333222 23457899999999999999987632111 0111357899999999765543
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00031 Score=75.88 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=66.6
Q ss_pred CCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCC
Q 044195 286 GKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDF 363 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~ 363 (1024)
+++-++|||+++.-+....+.+...+.....++.+|+||.+.. +... ....+.+.+.+++.+++.+.+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 4455667899988777778887777766556677777777643 3222 2345679999999999999887652111
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 364 NIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
..+.+..++..++|.|+.+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1244567889999999765544
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00026 Score=82.96 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=106.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
++||.+..+..|.+++... .-...+.++|+.|+||||+|+.++...--....+. .+.+.....+.+..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 5899998889999988643 22356789999999999999998863110000000 00000011111100
Q ss_pred h-------ccCC-CCCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc-CCchhhh
Q 044195 262 S-------ITND-QSKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT-RNLRVTV 331 (1024)
Q Consensus 262 ~-------l~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~~~~ 331 (1024)
. +.+. .....+..++...+... ..+++-++|||+++.-+....+.+...+........+|++| ....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 0 0000 00001122222222111 13455589999997766667777777666554566666555 4443432
Q ss_pred cc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 044195 332 NM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP-LAAKTL 390 (1024)
Q Consensus 332 ~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 390 (1024)
.+ .....+++++++.++....+...+...+- . -..+.+..|++.++|.. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-S---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 23467889999999988877765432211 1 12366778999999976 455544
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.83 E-value=0.00011 Score=90.37 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=84.7
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh---hccC-CceEEEEecCCCCHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV---QRRF-QIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~f-~~~~wv~~~~~~~~~~~~~ 257 (1024)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++..... .... +..+|. + +...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l-- 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL-- 246 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH--
Confidence 48999999999999996542 335679999999999999999873210 0111 234442 1 11111
Q ss_pred HHHHhccCCCCCCCcHHHHHHHH-HHHhCCCceeEEeeccCCC--------CHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 258 SILKSITNDQSKDDDLNWVQEKL-KKQLSGKKFLLVLDDVWNE--------NYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDd~~~~--------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
+.+... ..+.++....+ .+.-..++.+|+||+++.- ....-+.+...+..+ .-++|.+|....
T Consensus 247 -----~ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~e 318 (821)
T CHL00095 247 -----LAGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLDE 318 (821)
T ss_pred -----hccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHHH
Confidence 111111 12222222222 2222457899999999421 111112233333221 245666666544
Q ss_pred hhh-------ccCCccceecCCCChHhHHHHHHh
Q 044195 329 VTV-------NMGADQAYQLKELSNDDCLCLLTQ 355 (1024)
Q Consensus 329 ~~~-------~~~~~~~~~l~~L~~~ea~~lf~~ 355 (1024)
... .....+.+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 321 112345678888898998888764
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.0004 Score=78.73 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=91.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccC--CceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRF--QIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
...+.|+|++|+|||+|++++++. ..... ..++|+++ .++...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 456899999999999999999983 33333 24556643 23344444444321 122 2233333
Q ss_pred CCceeEEeeccCCCCHH--HHHHhhcCCCCC-CCCcEEEEEcCCch---------hhhccCCccceecCCCChHhHHHHH
Q 044195 286 GKKFLLVLDDVWNENYE--YWSIFSRPFGAG-APGSKIVVTTRNLR---------VTVNMGADQAYQLKELSNDDCLCLL 353 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~~--~~~~l~~~~~~~-~~gs~ilvTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf 353 (1024)
+ .-+|||||++..... ..+.+...+... ..|..+|+|+.... +...+.....+.+++.+.++...++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348999999642111 112222222111 13456888876421 1222333456889999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 354 TQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
.+.+..... .. .+++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~-~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGL-EL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHH
Confidence 987654221 11 24777788888888766443
No 148
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00071 Score=78.99 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.++...--...-+ ..+.+.....+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 358999999999999987542 345677899999999999999876211000000 00011111111111
Q ss_pred HhccCC-----CCCCCcHH---HHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc-CCchhh
Q 044195 261 KSITND-----QSKDDDLN---WVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT-RNLRVT 330 (1024)
Q Consensus 261 ~~l~~~-----~~~~~~~~---~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~~~ 330 (1024)
.....+ .......+ ++...+... ..++.-++|||+++.-+...++.+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000 00011122 222221111 24566689999997766667777776665544455555544 433332
Q ss_pred hc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 331 VN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
.. ......+.+.+++.++....+...+...+- .. ..+.+..|++.++|.+.-+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 22 123457889999999998888776532211 11 2366778899999887543
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00073 Score=76.35 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=87.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
..-+.|+|+.|+|||+|++++++. .......+++++. ..+...+...+... .. ..++..++ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356889999999999999999983 3333344556642 33444444444211 11 22333333 4
Q ss_pred ceeEEeeccCCCCHH--HHHHhhcCCCCC-CCCcEEEEEcCCc-h--------hhhccCCccceecCCCChHhHHHHHHh
Q 044195 288 KFLLVLDDVWNENYE--YWSIFSRPFGAG-APGSKIVVTTRNL-R--------VTVNMGADQAYQLKELSNDDCLCLLTQ 355 (1024)
Q Consensus 288 ~~LlVlDd~~~~~~~--~~~~l~~~~~~~-~~gs~ilvTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~lf~~ 355 (1024)
.-+|+|||+...... ..+.+...+... ..|..||+||... . +..++.....+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 558999998543211 112222221100 1355788888642 1 122333446788999999999999988
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 356 ISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
.+.... ... .+++..-|++.+.|.-
T Consensus 283 k~~~~~-~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALS-IRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcC-CCC---CHHHHHHHHHhcCCCH
Confidence 764322 112 2355666777776543
No 150
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.001 Score=66.30 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=105.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEec-CCCCHHHHHHHHHHhccCCCCCC--CcHHHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVS-EDFNVFRVTKSILKSITNDQSKD--DDLNWVQEKLKKQ 283 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~ 283 (1024)
+.+++.++|.-|+|||.+.++.... .. =+.++-|.+. ...+...+...++..+..++.-. .-.++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 4469999999999999999954431 11 1112223333 34566778888888887733211 1223333444444
Q ss_pred h-CCCc-eeEEeeccCCCCHHHHHHhhcCCCCCCCC---cEEEEEcCCchh-------hhcc-CCccc-eecCCCChHhH
Q 044195 284 L-SGKK-FLLVLDDVWNENYEYWSIFSRPFGAGAPG---SKIVVTTRNLRV-------TVNM-GADQA-YQLKELSNDDC 349 (1024)
Q Consensus 284 l-~~~~-~LlVlDd~~~~~~~~~~~l~~~~~~~~~g---s~ilvTtR~~~~-------~~~~-~~~~~-~~l~~L~~~ea 349 (1024)
. ++++ ..+++|+..+......+.++-.......+ -+|+..-..+-- .... ..... |.+.|+++++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5666 99999999776665655544332211111 234444332110 0111 12233 89999999999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhh
Q 044195 350 LCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGL 393 (1024)
Q Consensus 350 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 393 (1024)
..++..+..+......- -..+....|..+..|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHHH
Confidence 88887765443321111 12355577999999999999887643
No 151
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.78 E-value=3.1e-06 Score=86.87 Aligned_cols=257 Identities=19% Similarity=0.162 Sum_probs=154.5
Q ss_pred ccccCCCCCcEeeccCCCcc-----ccCcccccCCCCcEEecCCCc---ccccccc-------ccCCCCcccEEeccCCc
Q 044195 611 NEIGNLKHLRFLNLSRTNIQ-----ILPQSINSLYNLHTVLLEDCR---RLKKLCK-------DMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 611 ~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~---~l~~lp~-------~i~~L~~L~~L~l~~~~ 675 (1024)
..+..+..+.+|+|++|.+. .+-+.+.+.++|+..+++.-. ...++|+ .+...++|+.|+|++|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34566788999999999876 345567778899999988631 1123343 34567899999999998
Q ss_pred cccccCcc----CCCCCCCCccCceeeCCCCC--cccc-cccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 676 SLEEMPKG----FGKLTCLTTLCRFVVGKDSG--SALR-ELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 676 ~l~~~p~~----i~~l~~L~~L~~~~~~~~~~--~~~~-~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
.-...++. +..+..|++|...+++.... ..+. .+..|. ......+.++|+.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------------------~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------------------VNKKAASKPKLRVFI 163 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------------------HHhccCCCcceEEEE
Confidence 44344433 45567777774433321110 0000 011111 112345668999999
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCc-c--cCCCCCCCceEEEEecCCCCCC---
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPI-W--LGDFPFSKLVSLKFEYCGMCTS--- 822 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~--~~~~~l~~L~~L~L~~~~~~~~--- 822 (1024)
...|.... ......-..+..++.|+.+.++.|.+..-.. . .....+++|+.|+|.+|.+...
T Consensus 164 ~~rNrlen------------~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 164 CGRNRLEN------------GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred eecccccc------------ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 98887511 1122344556677999999998876532111 0 0112589999999999976532
Q ss_pred -CC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccC
Q 044195 823 -LP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRC 900 (1024)
Q Consensus 823 -l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 900 (1024)
+. .+..+|+|+.|++.+|. ++.-+..-+.......+|+|+.|.+.++..-.+-... ...+....|.|+.|+|++|
T Consensus 232 ~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~--la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA--LAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH--HHHHHhcchhhHHhcCCcc
Confidence 11 56778999999999985 3332221111111233899999999875422211000 0001112799999999999
Q ss_pred cCC
Q 044195 901 SKL 903 (1024)
Q Consensus 901 ~~L 903 (1024)
.+
T Consensus 309 -~l 310 (382)
T KOG1909|consen 309 -RL 310 (382)
T ss_pred -cc
Confidence 55
No 152
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00024 Score=77.34 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=90.7
Q ss_pred cCccccchhhHHH-HHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 180 EAKVYGREKDKEA-IVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 180 ~~~~vGr~~~~~~-l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
+..++|-...... +...+... ++.....+.|||..|.|||.|++++.+ ...........+.++ ......+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHH
Confidence 3445665544332 22333222 223567899999999999999999999 455555433333332 2233333
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC--C---HHHHHHhhcCCCCCCCCcEEEEEcCCc------
Q 044195 259 ILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE--N---YEYWSIFSRPFGAGAPGSKIVVTTRNL------ 327 (1024)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~--~---~~~~~~l~~~~~~~~~gs~ilvTtR~~------ 327 (1024)
++..+.. .-...+++.. .--++++||++-- . ++.+-.+...+.. .|..||+|++..
T Consensus 158 ~v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 158 FVKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhcc
Confidence 3333221 1133455555 4558999999541 1 1122222222222 344899999753
Q ss_pred ---hhhhccCCccceecCCCChHhHHHHHHhhhcC
Q 044195 328 ---RVTVNMGADQAYQLKELSNDDCLCLLTQISLG 359 (1024)
Q Consensus 328 ---~~~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~ 359 (1024)
.+..++...-++.+.+.+.+....++.+.+..
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 22334455678999999999999999886543
No 153
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=6e-06 Score=93.86 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=77.4
Q ss_pred hhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcc
Q 044195 587 QLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKL 666 (1024)
Q Consensus 587 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 666 (1024)
..+..+++|..|++.+| .+..+...+..+.+|++|+|++|.|+.+. .+..+..|+.|++++| .+..+ .++..+++|
T Consensus 89 ~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L 164 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDI-SGLESLKSL 164 (414)
T ss_pred cccccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhc-cCCccchhh
Confidence 34678888999999888 68887665788889999999999888874 3777888999999988 67666 346678888
Q ss_pred cEEeccCCccccccCcc-CCCCCCCCcc
Q 044195 667 HHLRNSNVHSLEEMPKG-FGKLTCLTTL 693 (1024)
Q Consensus 667 ~~L~l~~~~~l~~~p~~-i~~l~~L~~L 693 (1024)
+.+++++|. +..+... +..+.+++.+
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHH
Confidence 899988887 6655442 3555555555
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.76 E-value=0.00043 Score=79.44 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=93.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccC--CceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF--QIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (1024)
...-+.|+|++|+|||+|++++++ .....+ ..++|++.. ++...+...+... .. ..+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 345689999999999999999998 444443 234566433 3333343333211 11 2233333
Q ss_pred CCCceeEEeeccCCCCH--HHHHHhhcCCCCC-CCCcEEEEEcCCch---------hhhccCCccceecCCCChHhHHHH
Q 044195 285 SGKKFLLVLDDVWNENY--EYWSIFSRPFGAG-APGSKIVVTTRNLR---------VTVNMGADQAYQLKELSNDDCLCL 352 (1024)
Q Consensus 285 ~~~~~LlVlDd~~~~~~--~~~~~l~~~~~~~-~~gs~ilvTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 352 (1024)
+ +.-+|||||++.... ...+.+...+... ..|..||+||.... +...+....++.+++.+.++...+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 355899999954211 1112222211110 13445888887532 122334446789999999999999
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 353 LTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 353 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
+.+.+.... .. -.+++..-|++.++|..-.+.
T Consensus 289 l~~~~~~~~-~~---l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEG-ID---LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcC-CC---CCHHHHHHHHcCcCCCHHHHH
Confidence 998865321 11 223778889999998866443
No 155
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00059 Score=77.40 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=93.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccC-C-ceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-Q-IKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
..-+.|+|++|+|||+|++++++ ...... . .++|++. .++..++...+... ..+ .+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 34599999999999999999998 333333 2 4556653 34555555554321 111 2333334
Q ss_pred CCceeEEeeccCCCC-HHHH-HHhhcCCCCC-CCCcEEEEEcC-Cchh--------hhccCCccceecCCCChHhHHHHH
Q 044195 286 GKKFLLVLDDVWNEN-YEYW-SIFSRPFGAG-APGSKIVVTTR-NLRV--------TVNMGADQAYQLKELSNDDCLCLL 353 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~-~~~~-~~l~~~~~~~-~~gs~ilvTtR-~~~~--------~~~~~~~~~~~l~~L~~~ea~~lf 353 (1024)
.+.-+|++||++... ...+ +.+...+... ..|..||+||. .+.- ..++.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 456699999996321 1111 1222211110 13457888885 3221 122334457889999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 354 TQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
.+.+....- .. .+++..-|++.+.|.--.+.
T Consensus 273 ~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHG-EL---PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCC-CC---CHHHHHHHHhccccCHHHHH
Confidence 887643211 12 24677888888888654433
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00062 Score=78.18 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=91.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccC--CceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRF--QIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (1024)
..+.|+|..|+|||.|++++++. ....+ ..++|++. .++..++...+... .. ..+.+.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 35899999999999999999983 33322 24456643 33444444333211 11 123333332
Q ss_pred CceeEEeeccCCCCH-HHHH-HhhcCCCCC-CCCcEEEEEcCCc---------hhhhccCCccceecCCCChHhHHHHHH
Q 044195 287 KKFLLVLDDVWNENY-EYWS-IFSRPFGAG-APGSKIVVTTRNL---------RVTVNMGADQAYQLKELSNDDCLCLLT 354 (1024)
Q Consensus 287 ~~~LlVlDd~~~~~~-~~~~-~l~~~~~~~-~~gs~ilvTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~lf~ 354 (1024)
.-+|||||+..... ..|. .+...+... ..|..|||||+.. .+...+...-++.+++.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 45899999954311 1222 222222211 2356688888853 122334455688999999999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 355 QISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
+++.... ... -++++.-|++++.+..-.+.
T Consensus 457 kka~~r~-l~l---~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 457 KKAVQEQ-LNA---PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHhcC-CCC---CHHHHHHHHHhccCCHHHHH
Confidence 8764432 122 24677778888777654433
No 157
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.0012 Score=69.30 Aligned_cols=169 Identities=19% Similarity=0.184 Sum_probs=104.2
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
++.+.+|+.++..+..++.... ..-+.+|.|+|-.|+|||.+.+++.+.. =...+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 4458899999999999886543 1234567999999999999999999843 1246899999999999999999
Q ss_pred HHhcc-CCCCCCC---cHHHHH---HHHHH--Hh--CCCceeEEeeccCCCC---HHHHHHhhcCCCCCCCCcEEEEEcC
Q 044195 260 LKSIT-NDQSKDD---DLNWVQ---EKLKK--QL--SGKKFLLVLDDVWNEN---YEYWSIFSRPFGAGAPGSKIVVTTR 325 (1024)
Q Consensus 260 l~~l~-~~~~~~~---~~~~~~---~~l~~--~l--~~~~~LlVlDd~~~~~---~~~~~~l~~~~~~~~~gs~ilvTtR 325 (1024)
+.+.. .+.++.. +.+... ..+.+ .. +++.++||+|+++.-. ...+..+.....-.....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 99985 3332211 112222 22222 11 2468999999994321 1111111111001112233444444
Q ss_pred Cch---hhhccCCc--cceecCCCChHhHHHHHHhh
Q 044195 326 NLR---VTVNMGAD--QAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 326 ~~~---~~~~~~~~--~~~~l~~L~~~ea~~lf~~~ 356 (1024)
... ....+++. .++..+.-+.+|...++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 322 22223432 35667888999999998764
No 158
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=4.6e-06 Score=94.76 Aligned_cols=99 Identities=27% Similarity=0.367 Sum_probs=77.8
Q ss_pred CCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 591 DLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
.+..+..+++..| .+..+-..++.+.+|.+|++.+|.|+.+...+..+++|++|++++| .+..+ .++..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhe
Confidence 4555666667777 6776556688899999999999999988766888999999999998 78777 4588888899999
Q ss_pred ccCCccccccCccCCCCCCCCccC
Q 044195 671 NSNVHSLEEMPKGFGKLTCLTTLC 694 (1024)
Q Consensus 671 l~~~~~l~~~p~~i~~l~~L~~L~ 694 (1024)
+.+|. +..+. ++..++.|+.++
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred eccCc-chhcc-CCccchhhhccc
Confidence 99998 76664 455566666553
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.64 E-value=0.00047 Score=85.21 Aligned_cols=151 Identities=13% Similarity=0.162 Sum_probs=83.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC------CceEEEEecCCCCHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF------QIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~ 255 (1024)
.++||+.++.+++..|... ....+.++|++|+|||++|+.++.. +...+ ...+|.- +...+
T Consensus 174 ~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l 240 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL 240 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH
Confidence 4999999999999999654 2345568999999999999999873 22211 2233321 11111
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHh-C-CCceeEEeeccCCCC--------HHHHHHhhcCCCCCCCC-cEEEEEc
Q 044195 256 TKSILKSITNDQSKDDDLNWVQEKLKKQL-S-GKKFLLVLDDVWNEN--------YEYWSIFSRPFGAGAPG-SKIVVTT 324 (1024)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDd~~~~~--------~~~~~~l~~~~~~~~~g-s~ilvTt 324 (1024)
+ .+.. ...+.+.....+.+.+ + +++.+|+||+++.-. .+.-+.+...+. .| -++|-+|
T Consensus 241 ----~---a~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~---~g~i~~IgaT 309 (852)
T TIGR03346 241 ----I---AGAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA---RGELHCIGAT 309 (852)
T ss_pred ----h---hcch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh---cCceEEEEeC
Confidence 1 0000 0112222222222222 2 468999999995311 111222333222 23 3555555
Q ss_pred CCchhhh-------ccCCccceecCCCChHhHHHHHHhh
Q 044195 325 RNLRVTV-------NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 325 R~~~~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
....... .....+.+.++..+.++...++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 5443211 1123356888888999999988765
No 160
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.63 E-value=8.3e-05 Score=69.59 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 044195 211 FSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~~ 231 (1024)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999983
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00037 Score=83.48 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=85.6
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc-----CCceEEEEecCCCCHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-----FQIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~ 256 (1024)
.++||++++.+++..|.... ..-+.++|++|+|||++|+.+++.. .... .+..+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH-
Confidence 48999999999999997642 2345689999999999999998732 1111 13344421 11111
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccCC--------CCHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 257 KSILKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVWN--------ENYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~~--------~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
+ .+.. ...+.+.....+.+.+ +..+.+|+||+++. ....+...+..++... ..-++|-+|...
T Consensus 254 ---l---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 ---L---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred ---h---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1 1111 1112222222232222 45678999999953 1122232222222221 224555555544
Q ss_pred hhhh-------ccCCccceecCCCChHhHHHHHHhh
Q 044195 328 RVTV-------NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 328 ~~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
+... .....+.+.+++.+.+++..++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 3211 1123457999999999999998864
No 162
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.57 E-value=0.00044 Score=80.56 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.4
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
-.+++|-+..++++..|+..... .....+++.|+|++|+||||+++.++.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999876532 123346899999999999999999997
No 163
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.57 E-value=0.0019 Score=79.07 Aligned_cols=164 Identities=19% Similarity=0.214 Sum_probs=84.7
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|.+..+++|.+++......+....+++.++|++|+|||++|+.+++ .....| +-++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~---~~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF---VRFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe---EEEeCCCcccHHHHcC---
Confidence 44789999999998877543211223445899999999999999999998 333333 1222333223222211
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHH----HHHHhhcC--------CCCC-------CCCcEEE
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYE----YWSIFSRP--------FGAG-------APGSKIV 321 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~----~~~~l~~~--------~~~~-------~~gs~il 321 (1024)
. ...........+...+...-. ++-+|+||+++..... ....+... |.+. ..+.-+|
T Consensus 392 -~--~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 -H--RRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred -C--CCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 000011112223333433322 3347899998543210 01112111 1111 1233444
Q ss_pred EEcCCch-hhh-ccCCccceecCCCChHhHHHHHHhh
Q 044195 322 VTTRNLR-VTV-NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 322 vTtR~~~-~~~-~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
.||.... +.. ......++.+.+++.++-.+++..+
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 5554432 111 1123357889999988888887664
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=0.00033 Score=66.50 Aligned_cols=88 Identities=17% Similarity=0.032 Sum_probs=47.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC-C
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG-K 287 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-~ 287 (1024)
..+.|+|++|+||||+|+.++.. .......+++++.+........... ...................+.+..+. +
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999983 2222234556655443322222111 11111111112222222333333333 3
Q ss_pred ceeEEeeccCCCC
Q 044195 288 KFLLVLDDVWNEN 300 (1024)
Q Consensus 288 ~~LlVlDd~~~~~ 300 (1024)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 5999999996643
No 165
>PRK10536 hypothetical protein; Provisional
Probab=97.55 E-value=0.0015 Score=66.44 Aligned_cols=136 Identities=13% Similarity=0.208 Sum_probs=77.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE----ecCC-----CCH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF----VSED-----FNV 252 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~----~~~~-----~~~ 252 (1024)
.+.+|......+..++... .+|.+.|++|+|||+||.+++.+.-....|..++.+. +++. .+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3667888888888888532 4999999999999999999887422233454333321 1110 111
Q ss_pred ----HHHHHHHHHhccCCCCCCCcHHHHHH--------HHHHHhCCCce---eEEeeccCCCCHHHHHHhhcCCCCCCCC
Q 044195 253 ----FRVTKSILKSITNDQSKDDDLNWVQE--------KLKKQLSGKKF---LLVLDDVWNENYEYWSIFSRPFGAGAPG 317 (1024)
Q Consensus 253 ----~~~~~~il~~l~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDd~~~~~~~~~~~l~~~~~~~~~g 317 (1024)
...++.+.+.+..-. +....+.... .=..+++++.+ +||+|++..-+......+...+. .+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g---~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLG---EN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcC---CC
Confidence 112222222221100 0011111100 01235567655 99999998877766666665443 78
Q ss_pred cEEEEEcCCchh
Q 044195 318 SKIVVTTRNLRV 329 (1024)
Q Consensus 318 s~ilvTtR~~~~ 329 (1024)
|++|+|--..++
T Consensus 204 sk~v~~GD~~Qi 215 (262)
T PRK10536 204 VTVIVNGDITQC 215 (262)
T ss_pred CEEEEeCChhhc
Confidence 999999876544
No 166
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0025 Score=72.14 Aligned_cols=107 Identities=24% Similarity=0.284 Sum_probs=68.0
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
+.+-+|.++-+++|.+++.-..-.++.+.++++++|++|+|||++|+.++. ...+.| +-++++.-.+..++-.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKG-- 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcc--
Confidence 455789999999999999776544566789999999999999999999997 444444 1234555444444311
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCC
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWN 298 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~ 298 (1024)
.+...-..-...+++.+++. +...-|+.||.|+.
T Consensus 483 ----HRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 483 ----HRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----cceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 00111111222333333322 44566889999843
No 167
>PRK08116 hypothetical protein; Validated
Probab=97.54 E-value=0.00029 Score=74.05 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=58.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
..+.|+|.+|+|||.||.++++. ...+-..+++++ ..+++..+........ .... ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCCC
Confidence 46899999999999999999984 333334556665 3344444444432211 1111 12333344333
Q ss_pred eeEEeeccCCCCHHHHHH--hhcCCCCC-CCCcEEEEEcCC
Q 044195 289 FLLVLDDVWNENYEYWSI--FSRPFGAG-APGSKIVVTTRN 326 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~~~--l~~~~~~~-~~gs~ilvTtR~ 326 (1024)
||||||+..+...+|.. +...+... ..+..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995433334432 33222211 245679999974
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.53 E-value=0.00094 Score=82.16 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++||+.++.+++..|... ....+.++|++|+|||++|+.++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHH
Confidence 34999999999999999654 234567999999999999999987
No 169
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.52 E-value=0.00027 Score=78.92 Aligned_cols=157 Identities=16% Similarity=0.134 Sum_probs=86.9
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|.+..+++|.+.+.-+-.. +-...+.|.++|++|+|||++|+++++ .....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch-----
Confidence 35778999999888877532110 112446788999999999999999998 333333 2221111
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CHH---HHHHhhcCCCC--CCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NYE---YWSIFSRPFGA--GAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~~---~~~~l~~~~~~--~~~g 317 (1024)
+. ....+ .....+...+.....+.+.+|+||+++.- +.. ....+...+.. ...+
T Consensus 253 -L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 11100 01111222233333567889999997321 000 11112211211 1245
Q ss_pred cEEEEEcCCchhhhc-c----CCccceecCCCChHhHHHHHHhhh
Q 044195 318 SKIVVTTRNLRVTVN-M----GADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 318 s~ilvTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
.+||+||...+.... + .-...+.+...+.++..++|..+.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 678888875433221 1 123568889999999999998764
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.003 Score=67.66 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc----------------cCCceEEEEe-cCCC
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR----------------RFQIKAWTFV-SEDF 250 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----------------~f~~~~wv~~-~~~~ 250 (1024)
...+++...+... .-...+.++|+.|+||+++|..++...--.. ..+...|+.. .+..
T Consensus 11 ~~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 11 RAYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 4455666666432 2345788999999999999988875211000 0111222210 0000
Q ss_pred CHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcC
Q 044195 251 NVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTR 325 (1024)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR 325 (1024)
+. .....-.++++. .+.+.+ .+++-++|||++..-+...-+.+...+.....++.+|++|.
T Consensus 86 ~~-------------k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 86 GD-------------KLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred cc-------------cccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 00 000001122222 233322 34566999999977666666777666665556777777666
Q ss_pred Cc-hhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 326 NL-RVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 326 ~~-~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
.. .+... ......+.+.+++.+++.+.+.... .+ +..+..++..++|.|+.+..+.
T Consensus 152 ~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-------~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 152 QPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-------VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-------CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 53 33222 2345678999999999998887531 11 1335678999999998665443
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=3.2e-05 Score=77.46 Aligned_cols=88 Identities=23% Similarity=0.275 Sum_probs=54.6
Q ss_pred hhh-CCCCceEEEEeCCCCCccc---CCccccCCCCCcEeeccCCCccccCccc-ccCCCCcEEecCCCcc-cccccccc
Q 044195 587 QLL-LDLPRLRVFSLCGYCNIID---LPNEIGNLKHLRFLNLSRTNIQILPQSI-NSLYNLHTVLLEDCRR-LKKLCKDM 660 (1024)
Q Consensus 587 ~~l-~~l~~L~~L~L~~~~~l~~---lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~-l~~lp~~i 660 (1024)
..| ..+.+++.|||.+| .+.+ +-..+.+|++|++|+|+.|.+..-..+. ..+.+|++|-|.++.. .......+
T Consensus 64 ~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 344 56777888888887 4544 3344577888888888887665322222 3567788887777521 12233345
Q ss_pred CCCCcccEEeccCCc
Q 044195 661 GNLTKLHHLRNSNVH 675 (1024)
Q Consensus 661 ~~L~~L~~L~l~~~~ 675 (1024)
..+++++.|+++.|.
T Consensus 143 ~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNS 157 (418)
T ss_pred hcchhhhhhhhccch
Confidence 667777777777664
No 172
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=1.7e-05 Score=70.11 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=79.1
Q ss_pred hhhhhCCCCceEEEEeCCCCCcccCCccc-cCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCC
Q 044195 585 VLQLLLDLPRLRVFSLCGYCNIIDLPNEI-GNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNL 663 (1024)
Q Consensus 585 ~~~~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 663 (1024)
....+....+|+..+|++| .+.++|..+ .+.+.+..|+|++|.|.++|..+..++.|+.|+++.| .+...|.-|..|
T Consensus 45 avy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L 122 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPL 122 (177)
T ss_pred HHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHH
Confidence 3455677888999999999 788888777 4456899999999999999999999999999999998 677788888889
Q ss_pred CcccEEeccCCccccccCcc
Q 044195 664 TKLHHLRNSNVHSLEEMPKG 683 (1024)
Q Consensus 664 ~~L~~L~l~~~~~l~~~p~~ 683 (1024)
.+|-.|+..++. ...+|..
T Consensus 123 ~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 123 IKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HhHHHhcCCCCc-cccCcHH
Confidence 999999888887 6666654
No 173
>CHL00176 ftsH cell division protein; Validated
Probab=97.47 E-value=0.0015 Score=76.88 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=95.1
Q ss_pred CccccchhhHHHHHHH---HHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVEL---LLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.++.++++.+. +..... -+....+-|.++|++|+|||++|++++.. ... -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccHH----H
Confidence 3577877666555444 332211 01223467999999999999999999873 221 12322211 1
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CH---HHHHHhhcCCCC--CCCCc
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NY---EYWSIFSRPFGA--GAPGS 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~---~~~~~l~~~~~~--~~~gs 318 (1024)
+.. ... ......+...+.......+++|+|||++.- .. ..+..+...+.. ...+.
T Consensus 252 f~~----~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVE----MFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHH----Hhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 110 000 011123334445555678999999999431 11 112233322221 22455
Q ss_pred EEEEEcCCchhhh-cc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC
Q 044195 319 KIVVTTRNLRVTV-NM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG 382 (1024)
Q Consensus 319 ~ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 382 (1024)
.||.||...+... .+ .-...+.+...+.++-.++++.++.... .. .......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LS--PDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cc--hhHHHHHHHhcCCC
Confidence 6777776543221 11 1235678888888998999988764311 11 12334667888877
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0021 Score=70.07 Aligned_cols=162 Identities=9% Similarity=0.068 Sum_probs=90.2
Q ss_pred ccc-chhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 183 VYG-REKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 183 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
++| -+..++.+...+... .-.....++|+.|+|||++|+.++...--....... .++. -...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~----C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGT----CTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCc----CHHHHHHhc
Confidence 566 566677777777533 234577999999999999999987621100000000 0000 000000000
Q ss_pred hcc------CCCCCCCcHHHHHHHHHHH----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hh
Q 044195 262 SIT------NDQSKDDDLNWVQEKLKKQ----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VT 330 (1024)
Q Consensus 262 ~l~------~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~ 330 (1024)
.-. .........+++...+... ..+.+-++|||++..-+....+.+...+.....++.+|++|.+.. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 000 0000111223333222211 234556899999977777677778777776666777777776533 22
Q ss_pred hc-cCCccceecCCCChHhHHHHHHhh
Q 044195 331 VN-MGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
.. ......+++.++++++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 234578999999999998888754
No 175
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0011 Score=75.49 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=93.0
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
+.+-+|-++.+++|+++|.-..-...-...++++|||+|+|||+|++.++. ...+.| +-++++.-.+..++-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRG-- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRG-- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcc--
Confidence 345689999999999999654322334557999999999999999999998 555555 2233444434333310
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCH----HHHHHhhcCCCCC-------------CCCcEE--
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENY----EYWSIFSRPFGAG-------------APGSKI-- 320 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~----~~~~~l~~~~~~~-------------~~gs~i-- 320 (1024)
.+...-..-...+.+.+.+ .+.+.-+++||.++.-.. +--..+...+.+. --=|.|
T Consensus 395 ----HRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 395 ----HRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ----ccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0111111122233333332 245677999999843110 0011111111111 011333
Q ss_pred EEEcCCch-h-hhccCCccceecCCCChHhHHHHHHhhh
Q 044195 321 VVTTRNLR-V-TVNMGADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 321 lvTtR~~~-~-~~~~~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
|-|+..-+ + +..+....++++.+-+++|=.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33433322 2 2233456789999999999888877764
No 176
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.46 E-value=0.0015 Score=74.17 Aligned_cols=165 Identities=11% Similarity=0.123 Sum_probs=88.8
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc-----CCceEEEEecC
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-----FQIKAWTFVSE 248 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~ 248 (1024)
.++.|.+..++++.+.+..+-. .+-...+-+.++|++|+|||++|+++++. .... .....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4577899999988887643210 01123467899999999999999999983 3222 12344444433
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCceeEEeeccCCC--------CH----HHHHHhhcCCCCC-
Q 044195 249 DFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNE--------NY----EYWSIFSRPFGAG- 314 (1024)
Q Consensus 249 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~--------~~----~~~~~l~~~~~~~- 314 (1024)
.. + +....+. .......+....+.. -.+++++|+||+++.- .. .....+...+...
T Consensus 260 ~e----L----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 PE----L----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred hh----h----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 11 1 1111000 001111222222222 2357899999999531 00 0112333333221
Q ss_pred -CCCcEEEEEcCCchhhh-cc----CCccceecCCCChHhHHHHHHhhh
Q 044195 315 -APGSKIVVTTRNLRVTV-NM----GADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 315 -~~gs~ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
..+..||.||...+... .+ .-...+.++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445566665443211 11 113458999999999999999875
No 177
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.004 Score=66.65 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc------------------cCCceEEEEecCC
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR------------------RFQIKAWTFVSED 249 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~f~~~~wv~~~~~ 249 (1024)
...+++.+.+... .-...+.++|+.|+||+++|..++...--.. ..+...|+.-..
T Consensus 10 ~~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~- 83 (319)
T PRK06090 10 PVWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK- 83 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-
Confidence 3445666666433 3446889999999999999999875210000 001111221100
Q ss_pred CCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEc
Q 044195 250 FNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTT 324 (1024)
Q Consensus 250 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 324 (1024)
....-.++++. .+.+.+ .+..=++|||++..-+....+.+...+.....++.+|++|
T Consensus 84 -----------------~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (319)
T PRK06090 84 -----------------EGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVT 145 (319)
T ss_pred -----------------CCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 00112233332 233332 3445699999997777778888877777666677766666
Q ss_pred CCc-hhh-hccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 325 RNL-RVT-VNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 325 R~~-~~~-~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
.+. .+. +-....+.+.+.+++.+++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 146 ~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 146 HNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C----c-----hHHHHHHHcCCCHHHHHHH
Confidence 654 332 223355789999999999999887541 1 1 1346788999999877555
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0044 Score=66.46 Aligned_cols=177 Identities=11% Similarity=0.068 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC---Cc-----eEEEEecCCCCHHHHHHHH
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF---QI-----KAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~-----~~wv~~~~~~~~~~~~~~i 259 (1024)
..-+.+...+... .-.....++|+.|+||+++|.+++...--.... .+ .-++..+..+|...
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~----- 78 (325)
T PRK06871 9 PTYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI----- 78 (325)
T ss_pred HHHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE-----
Confidence 3345566666432 234577799999999999999987621100000 00 00001111111100
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhc-
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVN- 332 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~- 332 (1024)
+.......-.++++.+ +.+.+ .+++=++|||+++.-+....+.+...+.....++.+|++|... .+...
T Consensus 79 ---i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 79 ---LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred ---EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 0000001122333332 22222 3566689999998877777888887777666777777777654 33322
Q ss_pred cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 333 MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
....+.+.+.+++++++.+.+..... . . ...+...++.++|.|+.+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~-~-----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSS-A-----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhc-c-----C---hHHHHHHHHHcCCCHHHH
Confidence 23457899999999999988876531 1 1 123556788899999644
No 179
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0013 Score=68.52 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=102.5
Q ss_pred ccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
++=|-++.+++|.+...-+-.. +-..++=|.+||++|+|||-||++|++ +....| +.+..+ +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----H
Confidence 3456888888888876543211 234567899999999999999999999 555555 222221 2
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccCC-----------CCHH---HHHHhhcCCCCC--CCC
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVWN-----------ENYE---YWSIFSRPFGAG--APG 317 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~~-----------~~~~---~~~~l~~~~~~~--~~g 317 (1024)
+ .+...+ +...+.+.+.+.- ...+..|++|.++. .+.+ ..-++...+... ...
T Consensus 221 l----VqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 L----VQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred H----HHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2 222211 1123344444444 35789999999832 1111 122233333322 245
Q ss_pred cEEEEEcCCchhhhc--c--C-CccceecCCCChHhH-HHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh----HHH
Q 044195 318 SKIVVTTRNLRVTVN--M--G-ADQAYQLKELSNDDC-LCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP----LAA 387 (1024)
Q Consensus 318 s~ilvTtR~~~~~~~--~--~-~~~~~~l~~L~~~ea-~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai 387 (1024)
.|||.+|...++... + + -.+.++++ |+..++ .++|+-++ .......+-+++. +++.+.|.- -|+
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHt-rkM~l~~dvd~e~----la~~~~g~sGAdlkai 364 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHT-RKMNLADDVDLEL----LARLTEGFSGADLKAI 364 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHh-hhccCccCcCHHH----HHHhcCCCchHHHHHH
Confidence 699998876654322 1 2 23456666 555555 55666554 2333333334444 566666654 344
Q ss_pred HHHHhhh
Q 044195 388 KTLGGLL 394 (1024)
Q Consensus 388 ~~~~~~l 394 (1024)
.+=|+++
T Consensus 365 ctEAGm~ 371 (406)
T COG1222 365 CTEAGMF 371 (406)
T ss_pred HHHHhHH
Confidence 4445554
No 180
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.40 E-value=0.0012 Score=73.34 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=95.1
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|.+..+++|.+.+..+-. .+-..++-|.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4588888888888776643210 01134578999999999999999999983 22222 22211 1
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CHH---HHHHhhcCCCC--CCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NYE---YWSIFSRPFGA--GAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~~---~~~~l~~~~~~--~~~g 317 (1024)
.+ .....+ .....+...+.......+.+|+||+++.- +.. .+..+...+.. ...+
T Consensus 214 ~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 111110 01112222333333567899999997421 001 12222222221 1245
Q ss_pred cEEEEEcCCchhh-hcc-C---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 318 SKIVVTTRNLRVT-VNM-G---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 318 s~ilvTtR~~~~~-~~~-~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
..||+||...+.. ..+ . -...+.++..+.++...+|..+... ......-++ ..+++.+.|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccCH----HHHHHHcCCCC
Confidence 6788888764332 111 1 2345788888888888888765432 221222222 34666666653
No 181
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.38 E-value=0.0017 Score=62.65 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=77.2
Q ss_pred cchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh------------------ccCCceEEEEe
Q 044195 185 GREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ------------------RRFQIKAWTFV 246 (1024)
Q Consensus 185 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~------------------~~f~~~~wv~~ 246 (1024)
|-+...+.+.+.+... .-...+.++|+.|+||+++|..++...--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4456677777777543 234578999999999999999987621100 11223334332
Q ss_pred cCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEE
Q 044195 247 SEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIV 321 (1024)
Q Consensus 247 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~il 321 (1024)
.... ..-..+++. .+.+.+ .++.=++||||++.-+.+.++.+...+.....++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 011223322 333333 2356699999998888888888887777766788888
Q ss_pred EEcCCchh-h-hccCCccceecCCCC
Q 044195 322 VTTRNLRV-T-VNMGADQAYQLKELS 345 (1024)
Q Consensus 322 vTtR~~~~-~-~~~~~~~~~~l~~L~ 345 (1024)
++|++..- . .-......+.+.++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 88887542 2 222344566776654
No 182
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.36 E-value=1.2e-05 Score=94.44 Aligned_cols=118 Identities=25% Similarity=0.292 Sum_probs=64.0
Q ss_pred cCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEec-CC-CCCC--cccCCCCCCCceEEE
Q 044195 738 LNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGY-GG-TKFP--IWLGDFPFSKLVSLK 813 (1024)
Q Consensus 738 l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~-~~~p--~~~~~~~l~~L~~L~ 813 (1024)
...++.|+.|.+..+.... ..........+++|+.|++.++ .. ...+ .......+++|+.|+
T Consensus 184 ~~~~~~L~~l~l~~~~~~~--------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 249 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKIT--------------DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLD 249 (482)
T ss_pred HhhCchhhHhhhcccccCC--------------hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccc
Confidence 3447778888777776511 1113344556777888887762 11 1111 011112357777777
Q ss_pred EecCCCCCCCC--CCC-CCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccc
Q 044195 814 FEYCGMCTSLP--SVG-QLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEW 873 (1024)
Q Consensus 814 L~~~~~~~~l~--~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 873 (1024)
+++|...++.. .+. .+|+|+.|.+.+|..++..+..... ..+++|++|++++|..+
T Consensus 250 l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~----~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 250 LSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA----ERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH----HhcCcccEEeeecCccc
Confidence 77776544322 222 3677777777777654443332222 23666777777766655
No 183
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=1.1e-05 Score=71.25 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=81.2
Q ss_pred CceEEEEeCCCCCcccCC---ccccCCCCCcEeeccCCCccccCccccc-CCCCcEEecCCCccccccccccCCCCcccE
Q 044195 593 PRLRVFSLCGYCNIIDLP---NEIGNLKHLRFLNLSRTNIQILPQSINS-LYNLHTVLLEDCRRLKKLCKDMGNLTKLHH 668 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp---~~l~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 668 (1024)
+.+..++|+.| .+..++ ..+....+|...+|++|.++.+|+.+.. .+.+.+|++++| .+..+|..+..++.|+.
T Consensus 27 kE~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhh
Confidence 34567888888 565555 4456677888899999999999988754 458999999998 99999999999999999
Q ss_pred EeccCCccccccCccCCCCCCCCccC
Q 044195 669 LRNSNVHSLEEMPKGFGKLTCLTTLC 694 (1024)
Q Consensus 669 L~l~~~~~l~~~p~~i~~l~~L~~L~ 694 (1024)
|+++.|. +...|.-+..|.+|-.|.
T Consensus 105 lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 105 LNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccccCc-cccchHHHHHHHhHHHhc
Confidence 9999998 888888777777776663
No 184
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.34 E-value=0.0014 Score=79.33 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=89.2
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
+.+.+|.++.+++|.++|............++.++|++|+||||+|+.++. .....| +-++.+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch
Confidence 345899999999999988753211123446899999999999999999997 333333 223344433333221111
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHH----HHHhhcCCCCC---------------CCCcEE
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEY----WSIFSRPFGAG---------------APGSKI 320 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~----~~~l~~~~~~~---------------~~gs~i 320 (1024)
-...+ .....+...+... ....-+++||.++.-.... .+.+...+.+. -.+.-+
T Consensus 396 ~~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 01111 1112223333322 2234478999995432211 22333222211 123344
Q ss_pred EEEcCCchhhhc-cCCccceecCCCChHhHHHHHHhhh
Q 044195 321 VVTTRNLRVTVN-MGADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 321 lvTtR~~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
|.|+....+... .....++++.+++.+|-.++.+.+.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445544333222 1244678899999998888877653
No 185
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=2e-05 Score=92.63 Aligned_cols=113 Identities=26% Similarity=0.351 Sum_probs=57.4
Q ss_pred CCCccEEEEEecCCCCC---CcccCCCCCCCceEEEEecC-CCCCCCC-----CCCCCCCCceeeecCCCCceEeccccc
Q 044195 781 HQKLEELTITGYGGTKF---PIWLGDFPFSKLVSLKFEYC-GMCTSLP-----SVGQLPVLKHLEMRGMDRVKSVGLEFY 851 (1024)
Q Consensus 781 ~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~L~~~-~~~~~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~ 851 (1024)
.+.|+.|.+.++..... -... ..+++|+.|++++| ......+ ....+++|+.|++++|..+...+....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 67777777776643221 1112 13677777777763 2222211 223456666666666655544443332
Q ss_pred cCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCC
Q 044195 852 GNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKL 903 (1024)
Q Consensus 852 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 903 (1024)
.. .+++|+.|.+.+|..+++.....+... +++|++|++++|..+
T Consensus 265 ~~----~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 AS----RCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGL 308 (482)
T ss_pred Hh----hCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccc
Confidence 22 155666666555554433322222222 556666666666544
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.33 E-value=0.0023 Score=62.22 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++||-++.++++.-+-.+ ++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4689999999988766543 5667899999999999998888886
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00011 Score=86.98 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=91.1
Q ss_pred ccceeEEEEEccCCCCCccccc-ccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccC
Q 044195 537 SQSLRHFSYIRGECDGGTRFDF-IRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGN 615 (1024)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~ 615 (1024)
....+++.+.+........... -.-+|.|++|.+.+..- ..........++++|+.||+|++ ++..+ ..+++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGT-NISNL-SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecCCC-CccCc-HHHhc
Confidence 3455666665543222222222 23689999999987641 12233333489999999999999 78888 78999
Q ss_pred CCCCcEeeccCCCcccc--CcccccCCCCcEEecCCCcccccc--c----cccCCCCcccEEeccCCc
Q 044195 616 LKHLRFLNLSRTNIQIL--PQSINSLYNLHTVLLEDCRRLKKL--C----KDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 616 l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~l--p----~~i~~L~~L~~L~l~~~~ 675 (1024)
|++|+.|.+.+-.+..- -..+.+|++|++||+|.......- . +.-..|++||.||.+++.
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99999999998777643 245778999999999986433211 1 112358999999999876
No 188
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.0021 Score=71.86 Aligned_cols=147 Identities=17% Similarity=0.124 Sum_probs=85.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCce
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKF 289 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 289 (1024)
++.|+|+.++||||+++.+... .... .+++...+......-+.+. ...+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999666652 2111 4555433221111111111 1111111122778
Q ss_pred eEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhh-----hc-cCCccceecCCCChHhHHHHHHhhhcCCCCC
Q 044195 290 LLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVT-----VN-MGADQAYQLKELSNDDCLCLLTQISLGTGDF 363 (1024)
Q Consensus 290 LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~-----~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~ 363 (1024)
.++||.|+. ...|......+.+.++. +|++|+-+.... .. .+....+.+.||+..|...+-...+
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------ 167 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------ 167 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------
Confidence 999999954 46788877777766555 899988875432 22 2355678999999999876543100
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 364 NIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
....... .-.-.-..||.|-++..
T Consensus 168 -~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 -EPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred -chhHHHH-HHHHHHHhCCCcHHHhC
Confidence 0001111 22233457899987754
No 189
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.29 E-value=0.0029 Score=73.62 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=94.9
Q ss_pred CccccchhhHHHHHHHHH---hCC---CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLL---RDG---LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|-+..++++.+++. ... ..+....+-+.++|++|+|||++|++++.. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 457888777666655443 110 001233456899999999999999999973 2222 222221 11
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC----------HHHH----HHhhcCCC--CCCCCc
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN----------YEYW----SIFSRPFG--AGAPGS 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~----------~~~~----~~l~~~~~--~~~~gs 318 (1024)
+. ....+ .....+...+.......+.+|+|||++.-. ...+ ..+...+. ....+.
T Consensus 124 ~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 111233334444445678999999994310 1111 22222221 122345
Q ss_pred EEEEEcCCch-hhhcc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 044195 319 KIVVTTRNLR-VTVNM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL-PLAAKTL 390 (1024)
Q Consensus 319 ~ilvTtR~~~-~~~~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 390 (1024)
.||.||.... +...+ .-...+.++..+.++..++|..+...... ... .....+++.+.|. +--|..+
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCCHHHHHHH
Confidence 5666676543 11111 12356788888888888888876533211 111 2234678888774 4434333
No 190
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.29 E-value=0.0032 Score=66.40 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHH
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (1024)
+-++++..++... +-|.|.|++|+|||++|++++. ... ...+++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 3445555555432 3567999999999999999986 222 234455665555544443
No 191
>PRK12377 putative replication protein; Provisional
Probab=97.29 E-value=0.0005 Score=70.77 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=55.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
..+.|+|++|+|||+||.++++. .......++++++. +++..+-..... ...... +.+.+ .+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 57899999999999999999983 44444456777543 333333332211 111111 22222 356
Q ss_pred eeEEeeccCCCCHHHHH--HhhcCCCCCC-CCcEEEEEcCC
Q 044195 289 FLLVLDDVWNENYEYWS--IFSRPFGAGA-PGSKIVVTTRN 326 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~~--~l~~~~~~~~-~gs~ilvTtR~ 326 (1024)
-||||||+.......|. .+...+.... ..--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 69999999443222333 3333332221 22347888864
No 192
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=1.2e-05 Score=90.05 Aligned_cols=81 Identities=25% Similarity=0.315 Sum_probs=50.5
Q ss_pred CCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCccccccccccCCCCcccE
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHH 668 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 668 (1024)
.-++.|+.|||++| .+.+.- .+..|++|++|||++|.+..+|.- ...+ +|+.|++++| .++.+ .+|.+|++|+.
T Consensus 184 qll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhc
Confidence 34566677777777 455553 566677777777777776666542 2222 2777777776 55555 45667777777
Q ss_pred EeccCCc
Q 044195 669 LRNSNVH 675 (1024)
Q Consensus 669 L~l~~~~ 675 (1024)
||+++|.
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 7777665
No 193
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=7.8e-05 Score=74.80 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=53.9
Q ss_pred CCceEEEEeCCCCCcccCC--ccc-cCCCCCcEeeccCCCcc---ccCcccccCCCCcEEecCCCcccccccccc-CCCC
Q 044195 592 LPRLRVFSLCGYCNIIDLP--NEI-GNLKHLRFLNLSRTNIQ---ILPQSINSLYNLHTVLLEDCRRLKKLCKDM-GNLT 664 (1024)
Q Consensus 592 l~~L~~L~L~~~~~l~~lp--~~l-~~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~ 664 (1024)
.+.+..|.+.++ .+...- ..| ...++++.|||.+|.|+ ++-....+|+.|++|+++.|. +....... ..+.
T Consensus 44 ~ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLK 121 (418)
T ss_pred ccchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCccccc
Confidence 334556666666 454432 122 45788999999999887 444556789999999999883 32211112 2556
Q ss_pred cccEEeccCCc
Q 044195 665 KLHHLRNSNVH 675 (1024)
Q Consensus 665 ~L~~L~l~~~~ 675 (1024)
+|+.|-+.|+.
T Consensus 122 nl~~lVLNgT~ 132 (418)
T KOG2982|consen 122 NLRVLVLNGTG 132 (418)
T ss_pred ceEEEEEcCCC
Confidence 88888888776
No 194
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.001 Score=69.38 Aligned_cols=101 Identities=19% Similarity=0.122 Sum_probs=54.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
..+.|+|++|+|||.||.++++. .......++|+++ .+++..+.... .......... .+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~-----~~~~~~~~l~----~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVAR-----RELQLESAIA----KL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHH-----hCCcHHHHHH----HH-hcC
Confidence 45999999999999999999873 3333345566643 34444443221 1112222222 22 234
Q ss_pred eeEEeeccCCCCHHHH--HHhhcCCCCCCCCcEEEEEcCCc
Q 044195 289 FLLVLDDVWNENYEYW--SIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~--~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
-||||||+.......| ..+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 5999999954322222 22333232211123589998753
No 195
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.26 E-value=0.0092 Score=64.91 Aligned_cols=199 Identities=12% Similarity=0.117 Sum_probs=118.7
Q ss_pred chhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHH-HHHhcChhhhccCCceEEEEecCC---CCHHHHHHHHHH
Q 044195 186 REKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLA-QLVYNDDRVQRRFQIKAWTFVSED---FNVFRVTKSILK 261 (1024)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~ 261 (1024)
|.+.+++|..||.+.. -..|.|.||.|+||+.|+ .++..+. ..+..++|.+- .+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997653 369999999999999999 6666542 22666665432 233444555554
Q ss_pred hcc-----------------------CCCCC-CCcHHH-HH-------HHHHH-------------------HhC---CC
Q 044195 262 SIT-----------------------NDQSK-DDDLNW-VQ-------EKLKK-------------------QLS---GK 287 (1024)
Q Consensus 262 ~l~-----------------------~~~~~-~~~~~~-~~-------~~l~~-------------------~l~---~~ 287 (1024)
++| +...+ ....+. +. ..|++ +++ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 443 22211 111111 11 11111 110 13
Q ss_pred ceeEEeeccCCCC---------HHHHHHhhcCCCCCCCCcEEEEEcCCchhhhc----cC--CccceecCCCChHhHHHH
Q 044195 288 KFLLVLDDVWNEN---------YEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVN----MG--ADQAYQLKELSNDDCLCL 352 (1024)
Q Consensus 288 ~~LlVlDd~~~~~---------~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~----~~--~~~~~~l~~L~~~ea~~l 352 (1024)
+-+||||+.-... ..+|..... . .+=.+||++|-+...... +. ..+.+.+...+.+-|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv---~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV---Q-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH---h-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6799999984321 123443221 1 234588888887554433 22 346788999999999999
Q ss_pred HHhhhcCCCCC------------CCC----ccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCCh
Q 044195 353 LTQISLGTGDF------------NIH----PSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDP 400 (1024)
Q Consensus 353 f~~~a~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~ 400 (1024)
...+....... ... ..........++..||=-.=+..+++.++...++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 98875432110 000 1233445567889999999999999999887554
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0096 Score=64.68 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC---Cc-----eEEEEecCCCCHHHHHHHH
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF---QI-----KAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~-----~~wv~~~~~~~~~~~~~~i 259 (1024)
..-+++.+.+.+. .-...+.+.|+.|+||+++|.+++...--...- .+ .-++..+..+|...+
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 3445666666433 345678899999999999999987521000000 00 001111111111000
Q ss_pred HHhccCCCC-CCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhc
Q 044195 260 LKSITNDQS-KDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVN 332 (1024)
Q Consensus 260 l~~l~~~~~-~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~ 332 (1024)
..... ..-.++++.+ +.+.+ .+++=++|||+++.-+....+.+...+.....++.+|.+|.+. .+...
T Consensus 80 ----~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ----ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 1122333332 22222 3566799999997777777777877777666677666666653 33322
Q ss_pred -cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 333 -MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 333 -~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
....+.+.+.+++.+++.+.+.... + .+ .+.+..+++.++|.|..+.
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 2345678999999999988886531 1 11 2346678999999996443
No 197
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.003 Score=71.24 Aligned_cols=186 Identities=16% Similarity=0.186 Sum_probs=111.0
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
++||-+.-...|.+.+... .-...-...|+.|+||||+|+.++... .+.. + ....+.+.-...++|-.
T Consensus 17 evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~Akal----NC~~--~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKAL----NCEN--G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHh----cCCC--C-CCCCcchhhhhhHhhhc
Confidence 4799999999999988754 233456788999999999999987521 1100 0 11112222222222222
Q ss_pred hccC-----CCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hh
Q 044195 262 SITN-----DQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VT 330 (1024)
Q Consensus 262 ~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~ 330 (1024)
.-.. +......++++ +.|.+.. +++-=+.|||.|+--+...|+.+..-+.....+.+.|+.|.+.+ +.
T Consensus 85 g~~~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 1000 00011112222 2222222 34555999999987788889998888876667777777666643 32
Q ss_pred -hccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 331 -VNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 331 -~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
.-....+.|.++.++.++....+...+-...- . -.++....|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I-~---~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI-N---IEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCC-c---cCHHHHHHHHHHcCCCh
Confidence 22345688999999999998888876533221 1 22355566777777754
No 198
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.19 E-value=0.0015 Score=80.12 Aligned_cols=136 Identities=20% Similarity=0.219 Sum_probs=77.1
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
..++|-+..++.+.+.+..... .++....++.++|++|+|||.+|++++.. .-......+-++++.-...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 4589999999999888865311 12334558899999999999999998762 2111222233333221111
Q ss_pred HHHHhccCCCCCC---CcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEE
Q 044195 258 SILKSITNDQSKD---DDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVT 323 (1024)
Q Consensus 258 ~il~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvT 323 (1024)
.-...+.+.+++- .....+...++ +...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111222222111 11122333333 2455699999998777777777766655442 34556667
Q ss_pred cCC
Q 044195 324 TRN 326 (1024)
Q Consensus 324 tR~ 326 (1024)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.18 E-value=0.0025 Score=62.61 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=71.6
Q ss_pred ccccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHH
Q 044195 177 LVNEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 177 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (1024)
...-..++|.|...+.+++--..-. .+...--|.+||..|+|||+|++++.+ .+....-..+=| .+
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV--~k-------- 121 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEV--DK-------- 121 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEE--cH--------
Confidence 3444568999888887765433321 122345789999999999999999998 444444332222 21
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHh--CCCceeEEeeccC-CCCHHHHHHhhcCCCCCC---CCcEEEEEcCC
Q 044195 257 KSILKSITNDQSKDDDLNWVQEKLKKQL--SGKKFLLVLDDVW-NENYEYWSIFSRPFGAGA---PGSKIVVTTRN 326 (1024)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDd~~-~~~~~~~~~l~~~~~~~~---~gs~ilvTtR~ 326 (1024)
.++.. ...|.+.+ ...||+|..||+. ++....+..+.+.+..+- +...++..|.+
T Consensus 122 --------------~dl~~-Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 --------------EDLAT-LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred --------------HHHhh-HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11111 11233333 4579999999983 334456777777776442 33344444444
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.0047 Score=63.55 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
...+.++|.+|+|||+||.++++. ....-..++++++ .+++..+-..... ...... .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 357899999999999999999984 3333345566643 3344333332211 111122 2333344 4
Q ss_pred ceeEEeeccCCCCHHHHHH--hhcCCCCC-CCCcEEEEEcCC
Q 044195 288 KFLLVLDDVWNENYEYWSI--FSRPFGAG-APGSKIVVTTRN 326 (1024)
Q Consensus 288 ~~LlVlDd~~~~~~~~~~~--l~~~~~~~-~~gs~ilvTtR~ 326 (1024)
.-+|||||+.......|+. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 5589999996654445553 22222211 123457888864
No 201
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.13 E-value=0.0002 Score=84.93 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=93.2
Q ss_pred CCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcc---cCCCCCCCccEEEEecccCc-cccCCCCCC
Q 044195 859 FPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQG---TLPERLLLLEKLVIQSCKQL-LVTIQCLPA 934 (1024)
Q Consensus 859 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~---~lp~~l~~L~~L~l~~c~~l-~~~l~~l~~ 934 (1024)
-.+|++|++.+...+..-++...... ||+|++|.+.+-.-..+ .+-.++|+|..|||++++.- ..++.++.+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~----LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTM----LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhh----CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhcccc
Confidence 36789999988655544333333333 89999999987421121 23368899999999998622 278888889
Q ss_pred cCEEEEccCCCccc---cCCCCCCCccEEEEcCCCCcccc--hh---hhcCCCCCCCEEeeecCCCCCcccccccccccC
Q 044195 935 LSELQIRGCRRVVF---SSPIDFSSLKSVFLGDIANQVVL--AA---LFEQGLPQLESLKIDSVRAPTYLWQSETRLLQD 1006 (1024)
Q Consensus 935 L~~L~l~~~~~l~~---~~~~~l~~L~~L~l~~c~~l~~l--~~---~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~ 1006 (1024)
|+.|.+.+-..... ...-.|.+|+.|++|.-.....- .. +.-..||.|+.|+.++..--..+ .+ .-+..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~-le--~ll~s 273 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI-LE--ELLNS 273 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH-HH--HHHHh
Confidence 98888876653321 12346789999999875433221 11 22346888888888865221111 11 12344
Q ss_pred CCCCCEEeeeCC
Q 044195 1007 IRSLNRLHISRC 1018 (1024)
Q Consensus 1007 l~~L~~L~l~~c 1018 (1024)
-|+|+.+.+-+|
T Consensus 274 H~~L~~i~~~~~ 285 (699)
T KOG3665|consen 274 HPNLQQIAALDC 285 (699)
T ss_pred CccHhhhhhhhh
Confidence 566666665544
No 202
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.00017 Score=71.55 Aligned_cols=93 Identities=26% Similarity=0.259 Sum_probs=64.2
Q ss_pred hhhhCCCCceEEEEeCCCCCccc-----CCccccCCCCCcEeeccCCCc---c-ccC-------cccccCCCCcEEecCC
Q 044195 586 LQLLLDLPRLRVFSLCGYCNIID-----LPNEIGNLKHLRFLNLSRTNI---Q-ILP-------QSINSLYNLHTVLLED 649 (1024)
Q Consensus 586 ~~~l~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~~~i---~-~lp-------~~i~~L~~L~~L~l~~ 649 (1024)
...+..+..+..++|||| .+.. +-..|.+-.+|+..+++.-.. . ++| +.+-++++|+..+||.
T Consensus 23 ~eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 23 VEELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 444555778888888888 4533 335566677888888876321 1 333 3456789999999999
Q ss_pred Cccccccccc----cCCCCcccEEeccCCcccccc
Q 044195 650 CRRLKKLCKD----MGNLTKLHHLRNSNVHSLEEM 680 (1024)
Q Consensus 650 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~ 680 (1024)
|..-...|+. |++-+.|.+|.+++|. ++.+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 8665555543 6778899999999887 5543
No 203
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.10 E-value=0.025 Score=64.49 Aligned_cols=204 Identities=12% Similarity=0.059 Sum_probs=124.6
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChh---hhccCC--ceEEEEecCCCCHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDR---VQRRFQ--IKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~---~~~~f~--~~~wv~~~~~~~~~~~~ 256 (1024)
.+-+|+.+..+|..++...-+. ++....+.|.|.+|+|||..+..|.+... .++.-. ..+.|+.-.-..+.++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 4668999999999988776532 24456999999999999999999997432 112222 23445555566799999
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeecc---CCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-
Q 044195 257 KSILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDV---WNENYEYWSIFSRPFGAGAPGSKIVVTTRNL- 327 (1024)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~---~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~- 327 (1024)
..|...+.+.... .......+..++ +.+.+++++|++ |...++..-.+..+ +..++||++|.+--.
T Consensus 476 ~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW--pt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 476 EKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW--PTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC--CcCCCCceEEEEeccc
Confidence 9999999876432 222333444444 246789999987 33333222222221 224678776654321
Q ss_pred -hhh---------hccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhh
Q 044195 328 -RVT---------VNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGL 393 (1024)
Q Consensus 328 -~~~---------~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 393 (1024)
+.. ..+ +...+..+|-+.++-.++...+..+... -.....+-+|++|+.-.|-.-.|+.+.-++
T Consensus 551 mdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111 111 2245777888888888888776544321 223344556666766666666666665443
No 204
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.10 E-value=0.0027 Score=78.59 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=78.1
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
..++|.+..++.+...+..... .++....++.++|++|+|||++|+.++.. ....-...+.++.+.-......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 4589999999999988876421 01223467889999999999999999972 2222233445555443221111
Q ss_pred HHHHhccCCCCCC---CcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEE
Q 044195 258 SILKSITNDQSKD---DDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVT 323 (1024)
Q Consensus 258 ~il~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvT 323 (1024)
..+.+.+++. .....+...++ +....+|+||++.......+..+...+..+. ..+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1121111111 11122222222 2233499999998888888887776664431 23347777
Q ss_pred cCC
Q 044195 324 TRN 326 (1024)
Q Consensus 324 tR~ 326 (1024)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 763
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.011 Score=64.01 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=64.4
Q ss_pred CCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCC
Q 044195 286 GKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDF 363 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~ 363 (1024)
++.-++|||+++.-+...++.+...+....+++.+|++|.+ ..+... ....+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45558999999888888888888777766667766655554 443322 2344789999999999999887641 1
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 364 NIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
.+ ...++..++|.|+.+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997554443
No 206
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.10 E-value=0.0019 Score=69.11 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=68.8
Q ss_pred cchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhcc
Q 044195 185 GREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSIT 264 (1024)
Q Consensus 185 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (1024)
+|........+++..-.. +...+-+.|+|..|+|||.||.++++.. ...-..+.|++++ +++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 444455555666654321 2244679999999999999999999843 2322345566543 44444444432
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHH--hhcCC-CCC-CCCcEEEEEcCC
Q 044195 265 NDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSI--FSRPF-GAG-APGSKIVVTTRN 326 (1024)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~--l~~~~-~~~-~~gs~ilvTtR~ 326 (1024)
. ..... .+. .++ +.-||||||+..+....|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~-----~~~~~---~l~-~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKE---KID-AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHH---HHH-Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 11222 222 222 45699999996655555643 33322 222 234568888863
No 207
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.09 E-value=0.00089 Score=67.77 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=28.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEe
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFV 246 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 246 (1024)
-.++|+|..|+||||++..+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3678999999999999999987 46677877666643
No 208
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.07 E-value=0.00091 Score=65.52 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=50.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
..-+.|+|.+|+|||.||.++++.. ..+=..+.|+.+ .+++..+- ... ........ + +.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~--~~~g~~v~f~~~------~~L~~~l~----~~~-~~~~~~~~---~-~~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA--IRKGYSVLFITA------SDLLDELK----QSR-SDGSYEEL---L-KRLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEH------HHHHHHHH----CCH-CCTTHCHH---H-HHHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh--ccCCcceeEeec------Cceecccc----ccc-cccchhhh---c-Cccc-c
Confidence 4579999999999999999999832 222234566653 33443332 221 11122222 2 2222 3
Q ss_pred ceeEEeeccCCCCHHHHHH--hhcCCCCCCCCcEEEEEcCC
Q 044195 288 KFLLVLDDVWNENYEYWSI--FSRPFGAGAPGSKIVVTTRN 326 (1024)
Q Consensus 288 ~~LlVlDd~~~~~~~~~~~--l~~~~~~~~~gs~ilvTtR~ 326 (1024)
.=||||||+-......|.. +...+........+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 4588899996554334432 22211111112358888874
No 209
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0009 Score=69.55 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+.|+|++|+|||+||.++.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999873
No 210
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.01 E-value=0.0079 Score=59.67 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=94.7
Q ss_pred CccccchhhHHH---HHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEA---IVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
.++||.++.+.+ |++.|.++..-++-.++-|..+|++|.|||.+|+++++... ..| +.+- ..+++.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vk----at~liG 189 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVK----ATELIG 189 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEec----hHHHHH
Confidence 458898776654 56677655432445678999999999999999999999432 222 1111 112211
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCC------------CCHHHHHHhhcCCCC--CCCCcEEEE
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWN------------ENYEYWSIFSRPFGA--GAPGSKIVV 322 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~------------~~~~~~~~l~~~~~~--~~~gs~ilv 322 (1024)
+ ..+ +....+..+.+ .-+.-++++.||.++- +-.+..+.+..-+.. .+.|...|-
T Consensus 190 e---hVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 190 E---HVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred H---Hhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1 111 11112222222 2245799999998732 111223333333322 235666666
Q ss_pred EcCCchhhhcc-C--CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC
Q 044195 323 TTRNLRVTVNM-G--ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL 383 (1024)
Q Consensus 323 TtR~~~~~~~~-~--~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 383 (1024)
.|...+..... . -...++..--+++|-.+++..++-.-. ...+ .-.+.++++.+|.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P-lpv~----~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP-LPVD----ADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC-Cccc----cCHHHHHHHhCCC
Confidence 66655443221 1 123455665678888888887753211 1111 2234566666665
No 211
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.01 E-value=0.0036 Score=77.14 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=69.8
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
..++|.+..++.+...+..... .++....++.++|++|+|||++|+.++.. ....-...+.++++.-...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-----
Confidence 3588999999988888865321 01223357889999999999999999862 2112223445554432111
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHhCCC-ceeEEeeccCCCCHHHHHHhhcCCCC
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKKQLSGK-KFLLVLDDVWNENYEYWSIFSRPFGA 313 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDd~~~~~~~~~~~l~~~~~~ 313 (1024)
.....+.+.+++....+. ...+...++.+ .-+|+||++...+...+..+...+..
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 111222222211111110 11122333223 35999999977777777777665543
No 212
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0081 Score=66.90 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=62.1
Q ss_pred CccccchhhHHHHHHHHHhCCCC------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.++=|.++.+.++.+++.....+ +-...+-|.++|++|+|||.||++++++ ..-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 45668888888887777553210 1234577899999999999999999984 33333 333322
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCC
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWN 298 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~ 298 (1024)
+|+..+.+ ...+.+.+.+.+....-+++++||+++-
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 22333322 2233444445555677899999999943
No 213
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.00 E-value=0.0026 Score=62.95 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=64.2
Q ss_pred chhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEec----CCC-----CH----
Q 044195 186 REKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVS----EDF-----NV---- 252 (1024)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~-----~~---- 252 (1024)
+..+-....+.|... .+|.+.|++|+|||.||.+.+-+.-....|+.++++.-. +.. +.
T Consensus 5 ~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 334445556666532 499999999999999999988754445778887776421 111 00
Q ss_pred ---HHHHHHHHHhccCCCCCCCcHHHHHHHH------HHHhCCC---ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEE
Q 044195 253 ---FRVTKSILKSITNDQSKDDDLNWVQEKL------KKQLSGK---KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKI 320 (1024)
Q Consensus 253 ---~~~~~~il~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~i 320 (1024)
..-+.+.+..+. .....+.+...= ..+++|+ ...||+|++.+.+..++..+.... +.||||
T Consensus 77 ~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~ski 149 (205)
T PF02562_consen 77 EPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKI 149 (205)
T ss_dssp -TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EE
T ss_pred HHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEE
Confidence 011112222221 111122211100 1233453 469999999888887887776544 478999
Q ss_pred EEEcCCchh
Q 044195 321 VVTTRNLRV 329 (1024)
Q Consensus 321 lvTtR~~~~ 329 (1024)
|++--..+.
T Consensus 150 i~~GD~~Q~ 158 (205)
T PF02562_consen 150 IITGDPSQI 158 (205)
T ss_dssp EEEE-----
T ss_pred EEecCceee
Confidence 999865443
No 214
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.99 E-value=0.0032 Score=70.13 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=35.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++||++.++.+...+... ..|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHH
Confidence 3899999999988877654 4689999999999999999997
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.98 E-value=0.00072 Score=72.38 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=42.1
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
+++|.++.++++++++.......+...+++.|+|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999998764322345689999999999999999999873
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=96.97 E-value=0.002 Score=67.47 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+.|+|++|+|||+||.++++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4688999999999999999976
No 217
>PRK06921 hypothetical protein; Provisional
Probab=96.97 E-value=0.0023 Score=67.18 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhcc-CCceEEEEe
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRR-FQIKAWTFV 246 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~ 246 (1024)
...+.++|.+|+|||.||.++++. .... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999983 3333 345667764
No 218
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0047 Score=68.17 Aligned_cols=144 Identities=12% Similarity=0.105 Sum_probs=84.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc-------------------cCCceE
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR-------------------RFQIKA 242 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~ 242 (1024)
.++|-+....++..+..... .....+.++|++|+||||+|.++++..--.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 36777888888888887542 1233599999999999999999987321000 112334
Q ss_pred EEEecCCCC---HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcE
Q 044195 243 WTFVSEDFN---VFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSK 319 (1024)
Q Consensus 243 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ 319 (1024)
.+..+.... ..+.++++.+....... .++.-++++|+++.-+.+.-..+...+........
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444443333 23333333333221110 35677999999977666566666666666567778
Q ss_pred EEEEcCCc-hhhhcc-CCccceecCCCC
Q 044195 320 IVVTTRNL-RVTVNM-GADQAYQLKELS 345 (1024)
Q Consensus 320 ilvTtR~~-~~~~~~-~~~~~~~l~~L~ 345 (1024)
+|++|... .+...+ .....+++.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCch
Confidence 88888743 222211 233566776633
No 219
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.96 E-value=0.0042 Score=75.74 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=70.4
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
..++|-+..++.+...+..... ..+....++.++|++|+|||+||+.++. .. +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhccc---
Confidence 4478888888888888765321 0122345789999999999999999987 22 23445555544222111
Q ss_pred HHHHhccCCCC--CCCcHHHHHHHHHHHhCCC-ceeEEeeccCCCCHHHHHHhhcCCCC
Q 044195 258 SILKSITNDQS--KDDDLNWVQEKLKKQLSGK-KFLLVLDDVWNENYEYWSIFSRPFGA 313 (1024)
Q Consensus 258 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~-~~LlVlDd~~~~~~~~~~~l~~~~~~ 313 (1024)
+...++.+.. +...... +.+.++.+ .-+++||+++......++.+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222111 1111122 23333333 45999999988787777777766654
No 220
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0025 Score=74.82 Aligned_cols=123 Identities=20% Similarity=0.294 Sum_probs=77.7
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC---CceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF---QIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~ 254 (1024)
..++|-+..+..+.+.+..... .++....+....|+.|+|||.||++++. .-| +..+-++.|+-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHHHHH---
Confidence 4589999999999888876532 1334567888899999999999999986 223 3333343333221
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCce-eEEeeccCCCCHHHHHHhhcCCCCC
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKF-LLVLDDVWNENYEYWSIFSRPFGAG 314 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDd~~~~~~~~~~~l~~~~~~~ 314 (1024)
+.-+..+.+.+++---.++ --.+-+..+.++| +|.||++...+++.++.+...|.++
T Consensus 563 --kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 1222334333332111111 1234445567777 8999999888888888887777654
No 221
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0037 Score=68.26 Aligned_cols=51 Identities=29% Similarity=0.277 Sum_probs=38.0
Q ss_pred ccccchh---hHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcCh
Q 044195 182 KVYGREK---DKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDD 232 (1024)
Q Consensus 182 ~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 232 (1024)
++-|-|+ |+++|+++|..+.. -++.-++-|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3556554 67788888876531 133446789999999999999999999854
No 222
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.91 E-value=0.0043 Score=76.58 Aligned_cols=136 Identities=16% Similarity=0.243 Sum_probs=77.1
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
..++|-+..++.+...+..... ..+....++.++|+.|+|||+||+.++. ..-..-...+-++.++-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHH-
Confidence 4588999999999888864321 1122345677899999999999999986 221111233444444322211111
Q ss_pred HHHHhccCCCC--CCCcHHHHHHHHHHHhCCCc-eeEEeeccCCCCHHHHHHhhcCCCCC-----------CCCcEEEEE
Q 044195 258 SILKSITNDQS--KDDDLNWVQEKLKKQLSGKK-FLLVLDDVWNENYEYWSIFSRPFGAG-----------APGSKIVVT 323 (1024)
Q Consensus 258 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~-~LlVlDd~~~~~~~~~~~l~~~~~~~-----------~~gs~ilvT 323 (1024)
.-++.++. +..... .+.+.++.++ .+++||++...+...++.+...+..+ ...+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11121111 111112 2334444455 58999999887877888777666543 134456666
Q ss_pred cCC
Q 044195 324 TRN 326 (1024)
Q Consensus 324 tR~ 326 (1024)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 654
No 223
>PRK08118 topology modulation protein; Reviewed
Probab=96.91 E-value=0.00046 Score=66.97 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=26.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhh-ccCCceEE
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQ-RRFQIKAW 243 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 243 (1024)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999843332 34666665
No 224
>PRK04296 thymidine kinase; Provisional
Probab=96.89 E-value=0.0021 Score=64.01 Aligned_cols=114 Identities=11% Similarity=-0.049 Sum_probs=62.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCC--CCcHHHHHHHHHHHhCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSK--DDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 286 (1024)
.++.|+|+.|.||||+|..++. +...+-..++.+. + .++.......++.+++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k-~-~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK-P-AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe-c-cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999999887 4433333333331 1 111122233345555432211 1233444444544 334
Q ss_pred CceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 287 KKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 287 ~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
+.-+||+|.+.--+.++...+...+. ..|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 55699999995433332333333222 257889999987543
No 225
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.88 E-value=0.0039 Score=63.56 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (1024)
....++.|+|++|+|||++|.+++.. ....-..++|++... +...++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 34689999999999999999998873 333456789999876 5554443
No 226
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.87 E-value=0.0063 Score=69.34 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=79.9
Q ss_pred ccccchhhHHHHHHHHHhC----CCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRD----GLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~----~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
++.|.+..++.+......- ...+-...+-|.++|++|+|||.+|+++++. ....| +-++.+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~--------- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK--------- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH---------
Confidence 4667666555544321110 0001234577899999999999999999983 22222 1222211
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC--------CH----HHHHHhhcCCCCCCCCcEEEEEcC
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE--------NY----EYWSIFSRPFGAGAPGSKIVVTTR 325 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~--------~~----~~~~~l~~~~~~~~~gs~ilvTtR 325 (1024)
+..... ......+...+...-...+++|+||+++.. +. .....+...+.....+.-||.||.
T Consensus 295 -l~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 295 -LFGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred -hccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 111110 111122222333233457999999998431 00 011122222222233445666776
Q ss_pred Cch-hhhcc----CCccceecCCCChHhHHHHHHhhhcC
Q 044195 326 NLR-VTVNM----GADQAYQLKELSNDDCLCLLTQISLG 359 (1024)
Q Consensus 326 ~~~-~~~~~----~~~~~~~l~~L~~~ea~~lf~~~a~~ 359 (1024)
... +...+ .-...+.++.-+.++-.++|..+...
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 543 21111 12346777777888888898877543
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.034 Score=60.99 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=86.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
.....|.+.|++|+|||+||..++. ...|+.+=-++-.+ + ++.+ +......+...+.+..+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~------m-------iG~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPED------M-------IGLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHH------c-------cCcc--HHHHHHHHHHHHHHhhc
Confidence 4567888999999999999999986 45676554432111 1 1111 12223334445556667
Q ss_pred CCceeEEeeccCCC----------CHHHHHHhhcCCCCC-CCCcEEE--EEcCCchhhhccC----CccceecCCCCh-H
Q 044195 286 GKKFLLVLDDVWNE----------NYEYWSIFSRPFGAG-APGSKIV--VTTRNLRVTVNMG----ADQAYQLKELSN-D 347 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~----------~~~~~~~l~~~~~~~-~~gs~il--vTtR~~~~~~~~~----~~~~~~l~~L~~-~ 347 (1024)
+.--.||+||+..- +......+...+... ..|-|.+ -||....+...|+ -...|.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 78889999999321 001122222222211 1344544 4777777777775 225788998887 7
Q ss_pred hHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHc
Q 044195 348 DCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKC 380 (1024)
Q Consensus 348 ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~ 380 (1024)
+..+.+...- .-.+...+.++++...+|
T Consensus 677 ~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7777776541 012233445556665555
No 228
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.86 E-value=0.0024 Score=56.81 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 044195 211 FSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~~ 231 (1024)
|.|+|++|+|||++|..++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998873
No 229
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.86 E-value=0.0053 Score=63.43 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=35.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (1024)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 34579999999999999999999873 33345678899887 5554443
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.85 E-value=0.0059 Score=74.76 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=93.1
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|.+..++++.+++...-.. +-...+.|.|+|++|+|||+||+++++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 34789999999998877532100 1123467889999999999999999973 32222 222211
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC-----------HHHHHHhhcCCCCC-CCCcEEE
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN-----------YEYWSIFSRPFGAG-APGSKIV 321 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~-----------~~~~~~l~~~~~~~-~~gs~il 321 (1024)
++ .... .......+...+.......+.+|+||++..-. ......+...+... ..+..++
T Consensus 247 ~i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EI----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HH----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 11 1000 01112223333444445677899999984310 11122333322211 1233344
Q ss_pred E-EcCCch-hhhccC----CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044195 322 V-TTRNLR-VTVNMG----ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL 385 (1024)
Q Consensus 322 v-TtR~~~-~~~~~~----~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 385 (1024)
| ||.... +...+. -...+.+...+.++..+++..+.-+ .....+ .....+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCccc----cCHHHHHHhCCCCCH
Confidence 4 444322 211111 1245677777888888888755322 111111 224567778888643
No 231
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.84 E-value=0.0055 Score=66.06 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC-Cc-eEEEEecCC-CCHHHHHHHHHHhccCC
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-QI-KAWTFVSED-FNVFRVTKSILKSITND 266 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~-~~wv~~~~~-~~~~~~~~~il~~l~~~ 266 (1024)
..++++.+..- +....+.|+|.+|+|||||++.+++. +.... +. .+|+.+.+. ....++++.+...+...
T Consensus 120 ~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 34577777543 23356699999999999999998873 33322 33 367777754 56788888888877765
Q ss_pred CCCCCcHHH-----HHHHHHHHh--CCCceeEEeecc
Q 044195 267 QSKDDDLNW-----VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 267 ~~~~~~~~~-----~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
..+...... ....+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 432222111 122222333 689999999999
No 232
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.013 Score=65.48 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=88.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
+.-|.+||++|+|||-||++|+| +.+.+| +++-.+ ++ +...-+ .....+...+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----EL----lNkYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----EL----LNKYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HH----HHHHhh-----hHHHHHHHHHHHhhcCC
Confidence 45688999999999999999999 445555 333322 11 111111 11222333344444568
Q ss_pred ceeEEeeccCCC-----------CHHHHHHhhcCCCCC--CCCcEEEEEcCCchhhhc-c---C-CccceecCCCChHhH
Q 044195 288 KFLLVLDDVWNE-----------NYEYWSIFSRPFGAG--APGSKIVVTTRNLRVTVN-M---G-ADQAYQLKELSNDDC 349 (1024)
Q Consensus 288 ~~LlVlDd~~~~-----------~~~~~~~l~~~~~~~--~~gs~ilvTtR~~~~~~~-~---~-~~~~~~l~~L~~~ea 349 (1024)
+++|+||.++.- .....+++..-+... -.|.-||-.|..+++... + + -...+-+..=+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998431 112344444433322 256667777766554322 1 1 224566666678888
Q ss_pred HHHHHhhhcCCCC-CCCCccHHHHHHHHHHHcCCCh
Q 044195 350 LCLLTQISLGTGD-FNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 350 ~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
.++++........ ...+-+++++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8999887653221 1334466676653 3566654
No 233
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.72 E-value=0.0036 Score=61.81 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=29.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF 245 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 245 (1024)
...+|.|.|++|+||||+|+.++. +....+...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999997 5555566666653
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.0016 Score=70.18 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=54.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
..+.++|.+|+|||.||.++++. ....-..++|+++.+ ++..+...-. . ...+... . .+.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~-~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRF-N--NDKELEE---V-YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHh-c--cchhHHH---H-HHHhc-cC
Confidence 67999999999999999999984 333333566765432 3332322111 1 1111111 1 12222 23
Q ss_pred eeEEeeccCCCCHHHH--HHhhcCCCCC-CCCcEEEEEcCC
Q 044195 289 FLLVLDDVWNENYEYW--SIFSRPFGAG-APGSKIVVTTRN 326 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~--~~l~~~~~~~-~~gs~ilvTtR~ 326 (1024)
=||||||+.......| ..+...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 5899999955432333 2333322221 134568888874
No 235
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.71 E-value=0.013 Score=60.74 Aligned_cols=171 Identities=20% Similarity=0.186 Sum_probs=92.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC-CceEEEEecCCCCH-HHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-QIKAWTFVSEDFNV-FRVTKSI 259 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~-~~~~~~i 259 (1024)
.++|-.++-.++..++.+..- -++...|.|+|+.|.|||+|......+ ...| +..+-|........ .-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 388988998888888876532 234467899999999999998877764 2223 22333443332222 2244445
Q ss_pred HHhcc----CCCCCCCcHHHHHHHHHHHhC------CCceeEEeeccCCCCHHH-----HHHhhcCCCCCCCCcEEEEEc
Q 044195 260 LKSIT----NDQSKDDDLNWVQEKLKKQLS------GKKFLLVLDDVWNENYEY-----WSIFSRPFGAGAPGSKIVVTT 324 (1024)
Q Consensus 260 l~~l~----~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDd~~~~~~~~-----~~~l~~~~~~~~~gs~ilvTt 324 (1024)
..++. ..........+....+...|+ +-++++|+|.++-..... ++.+-..=....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 44443 221112222333334444442 236788888774321111 111111111223556778899
Q ss_pred CCchh-------hhccCCccceecCCCChHhHHHHHHhhh
Q 044195 325 RNLRV-------TVNMGADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 325 R~~~~-------~~~~~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
|-... -.++.-..++-+++++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 96432 2222222355667788888888887753
No 236
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.70 E-value=0.0047 Score=59.75 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=67.6
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS 262 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (1024)
+||.+..+.++.+.+..... ...-|.|+|..|+||+.+|+.+.+.. ...-..-+-|+++. .+...+-.++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888887776532 22456799999999999999999731 11222334445543 2333343344433
Q ss_pred ccCCCCCC-CcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCC------CCC-----CCcEEEEEcCC
Q 044195 263 ITNDQSKD-DDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFG------AGA-----PGSKIVVTTRN 326 (1024)
Q Consensus 263 l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~------~~~-----~gs~ilvTtR~ 326 (1024)
..+...+. ..... .+. +...=-|+||++..-.......+...+. .+. ...|||.||..
T Consensus 74 ~~~~~~~~~~~~~G---~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKKG---LLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBEH---HHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccCC---cee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 22211111 10101 111 2234478999997755544444433322 111 25688888875
No 237
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.014 Score=63.07 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hhhcc-CCccceecCCCChHhHHHHHHhh
Q 044195 286 GKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VTVNM-GADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
+++-++|+|++..-+....+.+...+.....+..+|++|.+.. +...+ .....+++.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3445667788876665555555555544334566777776643 33222 23468899999999999888654
No 238
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.0091 Score=59.48 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=52.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCCC---CCCcHHHHH-HHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQS---KDDDLNWVQ-EKLKK 282 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~~~-~~l~~ 282 (1024)
++++.++|+.|+||||.+.+++. +....-..+..++... .....+-++..++.++.+.. ...+...+. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 37999999999999999888887 3333333455666543 33566777788887775421 222333333 33443
Q ss_pred HhCCCceeEEeeccC
Q 044195 283 QLSGKKFLLVLDDVW 297 (1024)
Q Consensus 283 ~l~~~~~LlVlDd~~ 297 (1024)
.-.++.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 333344588888763
No 239
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.68 E-value=0.00064 Score=64.15 Aligned_cols=88 Identities=20% Similarity=0.090 Sum_probs=48.1
Q ss_pred EEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcee
Q 044195 211 FSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFL 290 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 290 (1024)
|.|+|++|+|||+||+.++. ... ....-+.++...+..+++...--. ..........+...+. +..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~---~~~~~i~~~~~~~~~dl~g~~~~~---~~~~~~~~~~l~~a~~-----~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLG---RPVIRINCSSDTTEEDLIGSYDPS---NGQFEFKDGPLVRAMR-----KGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHT---CEEEEEE-TTTSTHHHHHCEEET----TTTTCEEE-CCCTTHH-----EEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhh---cceEEEEeccccccccceeeeeec---cccccccccccccccc-----ceeE
Confidence 67999999999999999997 331 123346677777776664322111 0000000000000111 7889
Q ss_pred EEeeccCCCCHHHHHHhhcCC
Q 044195 291 LVLDDVWNENYEYWSIFSRPF 311 (1024)
Q Consensus 291 lVlDd~~~~~~~~~~~l~~~~ 311 (1024)
+|||++.......+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999765555555554443
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.68 E-value=0.021 Score=70.00 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=93.6
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|.+..++.|.+.+..+-.. +-...+-|.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 34678888877777766432100 1123456899999999999999999983 33222 222211
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC--------C----HHHHHHhhcCCCC--CCCCcE
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE--------N----YEYWSIFSRPFGA--GAPGSK 319 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~--------~----~~~~~~l~~~~~~--~~~gs~ 319 (1024)
+++.... ......+...+...-+..+.+|+||+++.- . ......+...+.. ...+.-
T Consensus 522 ----~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111111 111122333333344567899999998421 0 1122333333321 123445
Q ss_pred EEEEcCCchhhh-cc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 320 IVVTTRNLRVTV-NM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 320 ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
||.||...+... .+ .-...+.++..+.++..++|+.+..+ .......+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCC----HHHHHHHcCCCC
Confidence 666775543221 11 12356778888888888888765422 21112222 344667777653
No 241
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.68 E-value=0.0086 Score=61.50 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN 251 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 251 (1024)
....++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35679999999999999999999873 333334677887655543
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.65 E-value=0.0018 Score=60.88 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=61.3
Q ss_pred ccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh-hccCCceEEEEecCCCCHHHHHHHHHHh
Q 044195 184 YGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV-QRRFQIKAWTFVSEDFNVFRVTKSILKS 262 (1024)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (1024)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|.. +++... .
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----------
Confidence 566677777777766542 23356789999999999999988873221 111211 111110 0
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC-CCCcEEEEEcCCc
Q 044195 263 ITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG-APGSKIVVTTRNL 327 (1024)
Q Consensus 263 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~-~~gs~ilvTtR~~ 327 (1024)
.+.+.+ .+.--|+|+|+..-+......+...+... ....|+|.||+..
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 25557889999776665666665555422 4677999999853
No 243
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.61 E-value=0.049 Score=59.98 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 187 EKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 187 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
+.-.+.+.+.+.... .....+|+|.|.=|+|||++.+.+...
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445567777776542 256789999999999999999999873
No 244
>PRK04132 replication factor C small subunit; Provisional
Probab=96.61 E-value=0.032 Score=67.38 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=95.1
Q ss_pred cCCCcHHHHHHHHhcChhhhccC-CceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEee
Q 044195 216 MGGVGKTTLAQLVYNDDRVQRRF-QIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLD 294 (1024)
Q Consensus 216 ~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlD 294 (1024)
|.++||||+|.+++++. ....+ ..++-+++++..+.. .+++++..+...... -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999999842 12223 235566777654443 333333332211100 01245799999
Q ss_pred ccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHH
Q 044195 295 DVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEV 372 (1024)
Q Consensus 295 d~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~ 372 (1024)
+++.-+....+.+...+.......++|.++.+. .+...+ .....+++.+++.++....+...+...+ ... .++.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i---~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LEL---TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCC---CHHH
Confidence 998877777788877776544566777766654 332222 3457899999999999888776543211 111 1356
Q ss_pred HHHHHHHcCCChHHHH
Q 044195 373 GEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 373 ~~~i~~~~~g~PLai~ 388 (1024)
...|++.++|.+-.+.
T Consensus 714 L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 714 LQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 7889999999885443
No 245
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.60 E-value=0.00023 Score=80.09 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=82.2
Q ss_pred ccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccccc
Q 044195 559 IRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINS 638 (1024)
Q Consensus 559 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~ 638 (1024)
+.-++.|+.|.+..|. + .....+..|++|+.|||++| .+..+|.--..-.+|+.|+|++|.++++- .|.+
T Consensus 183 Lqll~ale~LnLshNk------~--~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~ 252 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK------F--TKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIEN 252 (1096)
T ss_pred HHHHHHhhhhccchhh------h--hhhHHHHhcccccccccccc-hhccccccchhhhhheeeeecccHHHhhh-hHHh
Confidence 3345778888888775 2 33447799999999999999 79888842222234999999999999884 5899
Q ss_pred CCCCcEEecCCCccccccc--cccCCCCcccEEeccCCc
Q 044195 639 LYNLHTVLLEDCRRLKKLC--KDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 675 (1024)
|.+|+.||++.| .+.... .-++.|..|+.|++.||.
T Consensus 253 LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999999999998 444332 236788999999999998
No 246
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.59 E-value=0.0072 Score=70.40 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+++|.+..++.+...+... ....|.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999888776432 335678999999999999999976
No 247
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.59 E-value=0.00018 Score=71.39 Aligned_cols=258 Identities=19% Similarity=0.139 Sum_probs=134.5
Q ss_pred ccccCCCCCcEeeccCCCcc-----ccCcccccCCCCcEEecCCCc----------cccccccccCCCCcccEEeccCCc
Q 044195 611 NEIGNLKHLRFLNLSRTNIQ-----ILPQSINSLYNLHTVLLEDCR----------RLKKLCKDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 611 ~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~----------~l~~lp~~i~~L~~L~~L~l~~~~ 675 (1024)
..+.-+..+..++||+|.|. .+...|.+-.+|+..+++.-. .+.-+-+.+-++++|+..++++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34455788999999999886 355567778999999988631 112222345689999999999998
Q ss_pred cccccCcc----CCCCCCCCccCceeeCCCC--Ccccc-cccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 676 SLEEMPKG----FGKLTCLTTLCRFVVGKDS--GSALR-ELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 676 ~l~~~p~~----i~~l~~L~~L~~~~~~~~~--~~~~~-~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
+....|+. |+.-+.|.+|...+++... +..+. .+..|.. .....+.+.|+...
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~--------------------nKKaa~kp~Le~vi 163 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY--------------------NKKAADKPKLEVVI 163 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH--------------------HhhhccCCCceEEE
Confidence 65566654 5566777777433322111 11110 1111111 11223456666666
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC----CcccCCCCCCCceEEEEecCCCCCC--
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF----PIWLGDFPFSKLVSLKFEYCGMCTS-- 822 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----p~~~~~~~l~~L~~L~L~~~~~~~~-- 822 (1024)
...|.... .+ ....-..+....+|+.+.+..|.+..- -...+...+.+|+.|+|.+|.+...
T Consensus 164 cgrNRlen--------gs----~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 164 CGRNRLEN--------GS----KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred eccchhcc--------Cc----HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 55554310 00 111122333445677777776654311 0111223467788888887765421
Q ss_pred --CC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccc-cccccccccCcccceeeec
Q 044195 823 --LP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPR-GFAQEVNEVFPKLRKLSLL 898 (1024)
Q Consensus 823 --l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 898 (1024)
+. .+..++.|+.|.+.+|-.-..-..++........+|+|..|.+.+...-.+.... .........+|-|..|.+.
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 11 3456777888888877322221112211112234677777766653221111111 0000011226777777776
Q ss_pred cC
Q 044195 899 RC 900 (1024)
Q Consensus 899 ~c 900 (1024)
+|
T Consensus 312 gN 313 (388)
T COG5238 312 GN 313 (388)
T ss_pred cC
Confidence 66
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.59 E-value=0.0092 Score=71.81 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=68.3
Q ss_pred ccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.++|-++.++.+...+..... ..+.....+.++|++|+|||++|+.++.. .. ...+.++.++-.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc----
Confidence 478989988888888864311 01223457899999999999999999872 22 2334455443222111
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCC-CceeEEeeccCCCCHHHHHHhhcCCC
Q 044195 259 ILKSITNDQSKDDDLNWVQEKLKKQLSG-KKFLLVLDDVWNENYEYWSIFSRPFG 312 (1024)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDd~~~~~~~~~~~l~~~~~ 312 (1024)
+ ..+.+.+.+....+ ....+.+.++. ...+|+||++.....+.++.+...+.
T Consensus 530 ~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 V-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred H-HHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1 22222211110000 01122233333 34699999998877777777765554
No 249
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.57 E-value=0.011 Score=61.03 Aligned_cols=89 Identities=20% Similarity=0.097 Sum_probs=54.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccC------CceEEEEecCCCCHHHHHHHHHHhccCCCC---------CC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF------QIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KD 270 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~ 270 (1024)
....++.|+|++|+|||++|.+++... ...- ..++|++....++...+. .+.+....... ..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 345799999999999999999987632 2223 567899887777654443 33333221110 11
Q ss_pred CcHHHHHHHHHHHh----CCCceeEEeeccC
Q 044195 271 DDLNWVQEKLKKQL----SGKKFLLVLDDVW 297 (1024)
Q Consensus 271 ~~~~~~~~~l~~~l----~~~~~LlVlDd~~ 297 (1024)
.+.+++...+.+.. ..+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33444454444443 2355589999983
No 250
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.028 Score=60.86 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=51.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC--HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN--VFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (1024)
..++|+|+|++|+||||++..++.. ....=..+..++.. .+. ..+-++...+.++.+.....+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4579999999999999999999863 22221234445443 332 333444444444433322345555555554433
Q ss_pred CC-CceeEEeeccCC
Q 044195 285 SG-KKFLLVLDDVWN 298 (1024)
Q Consensus 285 ~~-~~~LlVlDd~~~ 298 (1024)
.. +.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 22 345888887743
No 251
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.022 Score=64.50 Aligned_cols=54 Identities=22% Similarity=0.150 Sum_probs=37.2
Q ss_pred cccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC
Q 044195 183 VYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF 238 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f 238 (1024)
+=|-++.+.+|.+....+... +-...+-|.++|+||+|||++|+++++ .....|
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 445666666666555443211 224568899999999999999999999 445555
No 252
>PHA00729 NTP-binding motif containing protein
Probab=96.51 E-value=0.012 Score=58.95 Aligned_cols=24 Identities=46% Similarity=0.473 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....|.|+|.+|+||||||..+++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999987
No 253
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.51 E-value=0.007 Score=64.59 Aligned_cols=84 Identities=23% Similarity=0.169 Sum_probs=55.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKL 280 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (1024)
+..+++-|+|++|+||||||.+++. .....-..++|++....++.. .++.++.+.+ ...+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 3567999999999999999999886 333445678899887766653 2333332211 122345555555
Q ss_pred HHHhC-CCceeEEeecc
Q 044195 281 KKQLS-GKKFLLVLDDV 296 (1024)
Q Consensus 281 ~~~l~-~~~~LlVlDd~ 296 (1024)
...++ +..-+||+|.+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55543 45679999997
No 254
>PRK07261 topology modulation protein; Provisional
Probab=96.49 E-value=0.0062 Score=59.47 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=39.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhh-hccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRV-QRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
.|.|+|++|+||||||+++...... .-+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999999863211 112344444211 012233445555666666665
Q ss_pred eeEEeeccCC
Q 044195 289 FLLVLDDVWN 298 (1024)
Q Consensus 289 ~LlVlDd~~~ 298 (1024)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67888743
No 255
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47 E-value=0.011 Score=61.60 Aligned_cols=90 Identities=20% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhcc----CCceEEEEecCCCCHHHHHHHHHHhccCCCC---------CCCc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR----FQIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KDDD 272 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 272 (1024)
....++.|+|++|+|||++|.+++........ -..++|++....++..++ .++++..+.... ...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 35579999999999999999999753222221 367899998887765444 334443332111 0111
Q ss_pred H---HHHHHHHHHHh-CC-CceeEEeecc
Q 044195 273 L---NWVQEKLKKQL-SG-KKFLLVLDDV 296 (1024)
Q Consensus 273 ~---~~~~~~l~~~l-~~-~~~LlVlDd~ 296 (1024)
. ......+...+ +. +.-+||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 2 22333344444 33 5668888888
No 256
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.44 E-value=0.0049 Score=58.98 Aligned_cols=62 Identities=27% Similarity=0.300 Sum_probs=28.6
Q ss_pred hhCCCCceEEEEeCCCCCcccCCccc-cCCCCCcEeeccCCCccccC--cccccCCCCcEEecCCC
Q 044195 588 LLLDLPRLRVFSLCGYCNIIDLPNEI-GNLKHLRFLNLSRTNIQILP--QSINSLYNLHTVLLEDC 650 (1024)
Q Consensus 588 ~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~ 650 (1024)
.|..+++|.+|.|.+| .|..+-..+ .-+++|..|.|.+|+|.++- ..+..+++|++|.+-+|
T Consensus 59 ~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 3445555555555555 444443333 22344555555555544331 12334455555555444
No 257
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.064 Score=62.93 Aligned_cols=183 Identities=13% Similarity=0.088 Sum_probs=100.4
Q ss_pred Cccccchh---hHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREK---DKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.++.|-++ |+++++++|.++.. -+..-++=|.++|++|+|||-||++++.... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 34667665 55666777765431 1234567889999999999999999998432 224444432
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCC---------------CCHHHHHHhhcCCCCCCCCc-
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWN---------------ENYEYWSIFSRPFGAGAPGS- 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~---------------~~~~~~~~l~~~~~~~~~gs- 318 (1024)
+.++.+.+.. ...+.+.+...=...++.|.+|+++. +....++++..-+.....+.
T Consensus 379 ---EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1222222111 11111122222245788999998732 11223445544333322223
Q ss_pred -EEEEEcCCchhhhc--c--C-CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 319 -KIVVTTRNLRVTVN--M--G-ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 319 -~ilvTtR~~~~~~~--~--~-~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
-++-+|...++... + + -++.+.++.=+.....++|.-++-.... ..+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 33335555444221 1 2 2356777777778888899888644332 234456666 888888887543
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.0092 Score=62.15 Aligned_cols=76 Identities=25% Similarity=0.218 Sum_probs=45.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (1024)
+..-+.++|.+|+|||.||.++.+. ....--.+.+++ ..+++.++...... .... ..+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~----~~~~----~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDE----GRLE----EKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhc----CchH----HHHHHHhh-
Confidence 4467999999999999999999994 333323455654 33444444444332 1111 12222121
Q ss_pred CceeEEeeccCCC
Q 044195 287 KKFLLVLDDVWNE 299 (1024)
Q Consensus 287 ~~~LlVlDd~~~~ 299 (1024)
+-=||||||+-..
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 3349999999553
No 259
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.38 E-value=0.0098 Score=62.14 Aligned_cols=89 Identities=25% Similarity=0.217 Sum_probs=53.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhcc----CCceEEEEecCCCCHHHHHHHHHHhccCCCC---------CCCcH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRR----FQIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KDDDL 273 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 273 (1024)
...+.=|+|++|+|||.|+.+++-....... =..++|++-...++..++. +|++....+.. ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 4468999999999999999888753222222 2458899998889887764 56665432211 11223
Q ss_pred HHHHHH---HHHHh-CCCceeEEeecc
Q 044195 274 NWVQEK---LKKQL-SGKKFLLVLDDV 296 (1024)
Q Consensus 274 ~~~~~~---l~~~l-~~~~~LlVlDd~ 296 (1024)
+++... +...+ .++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 333332 22333 344458888887
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.38 E-value=0.0025 Score=58.40 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|++|+||||+|+.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 261
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.35 E-value=0.013 Score=62.37 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=48.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-CCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-FNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
..+++.|+|++|+||||++..++.....+..-..+..|+.... ....+.+....+.++.+.....+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 4579999999999999999998873322211124455554321 1223333344444443333333444454444433 3
Q ss_pred CCceeEEeecc
Q 044195 286 GKKFLLVLDDV 296 (1024)
Q Consensus 286 ~~~~LlVlDd~ 296 (1024)
+ .-+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 457888864
No 262
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.35 E-value=0.027 Score=56.49 Aligned_cols=60 Identities=8% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCceeEEeecc----CCCCHH-HHHHhhcCCCCCCCCcEEEEEcCCchhhhccC
Q 044195 273 LNWVQEKLKKQLSGKKFLLVLDDV----WNENYE-YWSIFSRPFGAGAPGSKIVVTTRNLRVTVNMG 334 (1024)
Q Consensus 273 ~~~~~~~l~~~l~~~~~LlVlDd~----~~~~~~-~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~ 334 (1024)
-++..-.+.+.+-..+-+|+-|+= +..+.. .++.+.. +. ...|..||+.|.++.++..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~-~~-~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRE-LN-KERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHH-HH-HhcCCEEEEEcCCHHHHHhCC
Confidence 344555678888889999999974 222222 2222222 21 125778999999999987553
No 263
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.35 E-value=0.011 Score=63.17 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKL 280 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (1024)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++.+.+ .....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999998763 33344567899877666553 2344433211 123344555555
Q ss_pred HHHhC-CCceeEEeecc
Q 044195 281 KKQLS-GKKFLLVLDDV 296 (1024)
Q Consensus 281 ~~~l~-~~~~LlVlDd~ 296 (1024)
...++ +..-+||+|.+
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55443 46779999998
No 264
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.33 E-value=0.025 Score=66.66 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=73.7
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
...++|....+.++.+.+.... ....-|.|+|..|+|||++|+.+++.. ...-...+.|+++.-.. ..+-..+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s--~r~~~pfv~i~c~~~~~-~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLS--PRAKRPFVKVNCAALSE-TLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeecCCCCH-HHHHHHH
Confidence 3469999999999888886553 233467899999999999999998732 11112345555554322 1111122
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEcCC
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTTRN 326 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~ 326 (1024)
.....+...+.... ..-.......-.|+||++..-.......+...+..+. ...+||.||..
T Consensus 268 fg~~~~~~~~~~~~-----~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 268 FGHEKGAFTGAIAQ-----RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred cCCCCCccCCCCcC-----CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 11110000000000 0000012234568999997766666666655443321 13588887754
No 265
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.09 Score=51.89 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=84.0
Q ss_pred ccc-chhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 183 VYG-REKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 183 ~vG-r~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
+|| -+..+.+|.+.+.-+... +-.+++-|.++|++|.|||-||++|+++. ...|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----H
Confidence 565 467777777766433211 34577889999999999999999999842 3445666643 2
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHH-HhCCCceeEEeeccCCC-----------CHH---HHHHhhcCCCCC--CCC
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKK-QLSGKKFLLVLDDVWNE-----------NYE---YWSIFSRPFGAG--APG 317 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDd~~~~-----------~~~---~~~~l~~~~~~~--~~g 317 (1024)
+.+..+.+- ....+.+.- .-..-+.+|+.|.+++. +.+ ..-.+...+... .++
T Consensus 217 lvqk~igeg----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQKYIGEG----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHhhhh----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 222221110 111111111 11446778888888431 111 111222222211 256
Q ss_pred cEEEEEcCCchhhhc--c---CCccceecCCCChHhHHHHHHhh
Q 044195 318 SKIVVTTRNLRVTVN--M---GADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 318 s~ilvTtR~~~~~~~--~---~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
-+||.+|..-++... + ...+.++.++-+++.-.++++-+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 688887765444321 1 13356777777777777777655
No 266
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.01 Score=67.62 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=53.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL- 284 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l- 284 (1024)
+.-+++.++|++|.||||||+-+++.. .| .++=+++|+......+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------ccc
Confidence 456899999999999999999999732 23 3556777776666555444444332221 12
Q ss_pred -CCCceeEEeeccCCCCHHHHHH
Q 044195 285 -SGKKFLLVLDDVWNENYEYWSI 306 (1024)
Q Consensus 285 -~~~~~LlVlDd~~~~~~~~~~~ 306 (1024)
.+++.-+|+|.++.......+.
T Consensus 384 adsrP~CLViDEIDGa~~~~Vdv 406 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAPRAAVDV 406 (877)
T ss_pred cCCCcceEEEecccCCcHHHHHH
Confidence 2578889999997655333333
No 267
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.31 E-value=0.014 Score=62.76 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhh----ccCCceEEEEecCCCCHHHHHHHHHHhccCCCC---------CCCc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQ----RRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KDDD 272 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 272 (1024)
....++-|+|++|+|||+|+.+++-..... ..=..++|++....++..++. ++++.++.+.. ...+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 355799999999999999999877422221 112468899999888887765 45666554321 1112
Q ss_pred HHHHH---HHHHHHh-CCCceeEEeecc
Q 044195 273 LNWVQ---EKLKKQL-SGKKFLLVLDDV 296 (1024)
Q Consensus 273 ~~~~~---~~l~~~l-~~~~~LlVlDd~ 296 (1024)
.+... ..+...+ .++.-|||+|.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33322 2233333 334558888887
No 268
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.01 Score=60.90 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=49.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChh--hhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDR--VQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (1024)
..|+|.++||||.|||+|.+++++... ....|....-+.+.... ++..-..+ .......+.+.|++.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs----LFSKWFsE------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS----LFSKWFSE------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH----HHHHHHhh------hhhHHHHHHHHHHHHH
Confidence 358999999999999999999999653 34455554444443321 11111111 2234555666777777
Q ss_pred CCCc--eeEEeecc
Q 044195 285 SGKK--FLLVLDDV 296 (1024)
Q Consensus 285 ~~~~--~LlVlDd~ 296 (1024)
.++. +.+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 6654 45668888
No 269
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.27 E-value=0.011 Score=59.37 Aligned_cols=180 Identities=14% Similarity=0.201 Sum_probs=98.0
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcCh----hhhccCCceEEEEecCC---------
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDD----RVQRRFQIKAWTFVSED--------- 249 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~----~~~~~f~~~~wv~~~~~--------- 249 (1024)
+.++++....+..... .+..+...++|+.|.||-|.+..+.+.. -.+-.-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5556665555555442 2457889999999999999887766521 01112233444433222
Q ss_pred -C-----------CHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCce-eEEeeccCCCCHHHHHHhhcCCCCCCC
Q 044195 250 -F-----------NVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKF-LLVLDDVWNENYEYWSIFSRPFGAGAP 316 (1024)
Q Consensus 250 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDd~~~~~~~~~~~l~~~~~~~~~ 316 (1024)
. .-+.+.++++.+.+....-. .-..+.| ++|+-.++.-+.+....+......-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 11223333333332211100 0012344 666766655455555555555444445
Q ss_pred CcEEEEEcCCch-hhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 317 GSKIVVTTRNLR-VTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 317 gs~ilvTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
.+|+|+...... +-..+ ...-.++++.-+++|....+...+-..+- .. | ++++.+|+++++|+-
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~l-p--~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QL-P--KELLKRIAEKSNRNL 222 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cC-c--HHHHHHHHHHhcccH
Confidence 678777443311 11111 12246889999999999988876533221 12 2 588999999999974
No 270
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.26 E-value=0.015 Score=54.95 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEe---cCCCCHHHHHHHHHHhc-----cCC-----CCCCCc---
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFV---SEDFNVFRVTKSILKSI-----TND-----QSKDDD--- 272 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~il~~l-----~~~-----~~~~~~--- 272 (1024)
..|-|++..|.||||+|...+- +...+=..+.++-. .........++.+ ..+ +.. .+...+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788888899999999988876 33333223333322 2233444444433 111 110 000011
Q ss_pred HHHHHHHHHHHhCC-CceeEEeeccCCC---CHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 273 LNWVQEKLKKQLSG-KKFLLVLDDVWNE---NYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 273 ~~~~~~~l~~~l~~-~~~LlVlDd~~~~---~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
........++.+.. +--|+|||++-.. ..-..+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11122333444444 4559999998221 11123334444444446678999999853
No 271
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.24 E-value=0.01 Score=59.65 Aligned_cols=109 Identities=13% Similarity=0.188 Sum_probs=58.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH-HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF-RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
++|.|+|+.|+||||++..+... ........++. +.++.... .-...+..+ .....+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q----~~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQ----REVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeee----cccCCCccCHHHHHHHHhcCC
Confidence 47899999999999999988762 32233334443 22221110 000011111 001112233455677777777
Q ss_pred ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 288 KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 288 ~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
+=.+++|++.+ .+.+....... ..|..++.|+-..++
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 88999999954 33444333222 245567777765544
No 272
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.23 E-value=0.0058 Score=58.50 Aligned_cols=100 Identities=23% Similarity=0.287 Sum_probs=75.0
Q ss_pred CCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccccc-CCCCcEEecCCCccccccc--cccCCCCcccE
Q 044195 592 LPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINS-LYNLHTVLLEDCRRLKKLC--KDMGNLTKLHH 668 (1024)
Q Consensus 592 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~ 668 (1024)
+.+.-.+||+.| .+..++ .+..++.|.+|.|.+|.|+.+-+.+.. +++|..|.+.+| .+.++- ..+..+++|++
T Consensus 41 ~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 345678999999 687775 478899999999999999988665554 577999999998 665553 23667889999
Q ss_pred EeccCCccccccCcc----CCCCCCCCccCc
Q 044195 669 LRNSNVHSLEEMPKG----FGKLTCLTTLCR 695 (1024)
Q Consensus 669 L~l~~~~~l~~~p~~----i~~l~~L~~L~~ 695 (1024)
|.+-+|. +...+.- +..+++|+.|+.
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeeh
Confidence 9998887 5443321 566777777754
No 273
>PRK06696 uridine kinase; Validated
Probab=96.21 E-value=0.006 Score=62.70 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 185 GREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 185 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|.+.+++|.+.+.... .+...+|+|.|.+|+||||+|+.++.
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36677788888887642 35678999999999999999999997
No 274
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.20 E-value=0.019 Score=60.29 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcCh-hhhccCCceEE----EEecCCCC--------
Q 044195 185 GREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDD-RVQRRFQIKAW----TFVSEDFN-------- 251 (1024)
Q Consensus 185 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~w----v~~~~~~~-------- 251 (1024)
+|..+-.-..++|.. +....|.+.|.+|+|||.||.++.-.. ..+..|..++- +.++++..
T Consensus 228 prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 355555555666653 467899999999999999987765321 23444544332 23333321
Q ss_pred -HHHHHHHHHHhc---cCCCCCCCcHHHHHHHH----------HHHhCCC---ceeEEeeccCCCCHHHHHHhhcCCCCC
Q 044195 252 -VFRVTKSILKSI---TNDQSKDDDLNWVQEKL----------KKQLSGK---KFLLVLDDVWNENYEYWSIFSRPFGAG 314 (1024)
Q Consensus 252 -~~~~~~~il~~l---~~~~~~~~~~~~~~~~l----------~~~l~~~---~~LlVlDd~~~~~~~~~~~l~~~~~~~ 314 (1024)
+.-..+.|..-+ ....... ....+.+ ..+++++ .-++|+|.+.+-+..+...+... .
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~ 375 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---A 375 (436)
T ss_pred hccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---c
Confidence 222333333322 2221111 2222222 1233453 45999999988777666666543 3
Q ss_pred CCCcEEEEEcCCchh
Q 044195 315 APGSKIVVTTRNLRV 329 (1024)
Q Consensus 315 ~~gs~ilvTtR~~~~ 329 (1024)
+.||||+.|.-..++
T Consensus 376 G~GsKIVl~gd~aQi 390 (436)
T COG1875 376 GEGSKIVLTGDPAQI 390 (436)
T ss_pred cCCCEEEEcCCHHHc
Confidence 589999999865444
No 275
>PRK09354 recA recombinase A; Provisional
Probab=96.19 E-value=0.016 Score=62.46 Aligned_cols=84 Identities=23% Similarity=0.185 Sum_probs=55.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKL 280 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (1024)
+..+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++.+.+ .....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999998863 33444678899888777653 3344433211 122344555555
Q ss_pred HHHhC-CCceeEEeecc
Q 044195 281 KKQLS-GKKFLLVLDDV 296 (1024)
Q Consensus 281 ~~~l~-~~~~LlVlDd~ 296 (1024)
...++ +..-+||+|-+
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55553 45679999998
No 276
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.18 E-value=0.0036 Score=70.56 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+++|.++.+++|++.|.......+...+++.++|++|+||||||+.++.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 4899999999999999433211234567999999999999999999997
No 277
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.18 E-value=0.018 Score=56.82 Aligned_cols=117 Identities=16% Similarity=0.031 Sum_probs=58.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccC--C-------------CCCCCcH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITN--D-------------QSKDDDL 273 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~-------------~~~~~~~ 273 (1024)
.+++|.|+.|.|||||++.++.... ...+.+++.-. +.......+-..++- + ...-..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5899999999999999999987321 12233333211 111110011111110 0 0001111
Q ss_pred HHHHHHHHHHhCCCceeEEeeccCCC-CHHHHHHhhcCCCCCCCCcEEEEEcCCchhhh
Q 044195 274 NWVQEKLKKQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTV 331 (1024)
Q Consensus 274 ~~~~~~l~~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 331 (1024)
+...-.+.+.+-.++-++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22333455666778889999987442 22222222222221123567888888766543
No 278
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.17 E-value=0.014 Score=58.43 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=55.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-h---
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ-L--- 284 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l--- 284 (1024)
+++.|.|++|+||||++..+... .... ...+.+..........+.+. .+.. ...+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCcc---hhhHHHHHhcCCccccccc
Confidence 68899999999999999998763 2222 23333333332222222222 1110 01111000000000 0
Q ss_pred --CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 285 --SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 285 --~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
..+.-+||+|+++--+...+..+...... .|+|+|+.--..+.
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 12346999999987777777777666554 57788887765443
No 279
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.17 E-value=0.009 Score=63.63 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..++.++|||++|+|||.+|++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999983
No 280
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.15 E-value=0.019 Score=58.45 Aligned_cols=125 Identities=12% Similarity=0.093 Sum_probs=72.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-----CCCHHHHHHHHHHhccCCCC-------CCCcHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-----DFNVFRVTKSILKSITNDQS-------KDDDLN 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~-------~~~~~~ 274 (1024)
+..+++|+|..|+||||+++.+.. ....-.+.++....+ .....+...++++.++.... .-...+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999996 223233344433211 22344556777777764432 111222
Q ss_pred HHHHHHHHHhCCCceeEEeeccCCC-CHHHHHHhhcCCCC--CCCCcEEEEEcCCchhhhccC
Q 044195 275 WVQEKLKKQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGA--GAPGSKIVVTTRNLRVTVNMG 334 (1024)
Q Consensus 275 ~~~~~l~~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~--~~~gs~ilvTtR~~~~~~~~~ 334 (1024)
...-.+.+.+.-++-++|.|..-+. +...-.++...+.. ...|-..+..|-+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 2334567788899999999986332 11111222221211 124666788888777765554
No 281
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.11 E-value=0.046 Score=52.08 Aligned_cols=125 Identities=17% Similarity=0.208 Sum_probs=71.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEe---------------------cC-----------------
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFV---------------------SE----------------- 248 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---------------------~~----------------- 248 (1024)
....+.|+|++|.||||+.+.+|...+. =.+.+|+.- -+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 3468999999999999999999974321 122333320 00
Q ss_pred -------CCCHHHHHHHHHHhccCCC------CCCCcHHHHHHHHHHHhCCCceeEEeeccCC--CCHHHHHHhhcCCCC
Q 044195 249 -------DFNVFRVTKSILKSITNDQ------SKDDDLNWVQEKLKKQLSGKKFLLVLDDVWN--ENYEYWSIFSRPFGA 313 (1024)
Q Consensus 249 -------~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~--~~~~~~~~l~~~~~~ 313 (1024)
...+.+-..+.++..+... ..-..-++..-.|.+.+-+++-+++-|.--. +....|+.+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 0112222333333333221 1122334455567788888999999996421 222345443221112
Q ss_pred CCCCcEEEEEcCCchhhhccC
Q 044195 314 GAPGSKIVVTTRNLRVTVNMG 334 (1024)
Q Consensus 314 ~~~gs~ilvTtR~~~~~~~~~ 334 (1024)
+..|..||++|.+.++...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 336899999999988776653
No 282
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00032 Score=69.92 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=64.2
Q ss_pred CCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCcccccccc--ccCCCCcccE
Q 044195 591 DLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCK--DMGNLTKLHH 668 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~ 668 (1024)
.+.+.+-|+..|| .+.++ ....+|+.|++|.|+-|+|++|- .+..+++|+.|+|+.| .+..+.+ -+.++++|+.
T Consensus 17 dl~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCC-CccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3455666777777 56666 23467777777777777777773 3667777787877776 5554432 2567778888
Q ss_pred EeccCCccccccCcc-----CCCCCCCCccCce
Q 044195 669 LRNSNVHSLEEMPKG-----FGKLTCLTTLCRF 696 (1024)
Q Consensus 669 L~l~~~~~l~~~p~~-----i~~l~~L~~L~~~ 696 (1024)
|-+..|.--+.-+.. +..|++|++|+..
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 877766533332222 4456666666543
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.09 E-value=0.027 Score=54.71 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=29.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN 251 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 251 (1024)
++.|+|++|+|||+++..++.. ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 333335677877765543
No 284
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.015 Score=68.64 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=85.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc-cC-----CceEEEEecCCCCHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR-RF-----QIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f-----~~~~wv~~~~~~~~~~~ 255 (1024)
.++||++|+.++++.|..... + --.++|.+|+|||++|.-++. ++-. .- +..++.-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----N--NPvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sL---------- 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----N--NPVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSL---------- 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----C--CCeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEe----------
Confidence 389999999999999987642 1 124789999999999988876 3221 11 1111110
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccCCC---------CHHHHHHhhcCCCCCCCCcEEEEEcC
Q 044195 256 TKSILKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVWNE---------NYEYWSIFSRPFGAGAPGSKIVVTTR 325 (1024)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~~~---------~~~~~~~l~~~~~~~~~gs~ilvTtR 325 (1024)
++..-+.+.. -..+.++....+.+.+ +.++..|+||.++.- ..+.-+.+..++..+ .--.|=.||-
T Consensus 233 --D~g~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~ 308 (786)
T COG0542 233 --DLGSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL 308 (786)
T ss_pred --cHHHHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH
Confidence 1111111111 2234444444444444 345899999998541 122233344444432 2223444554
Q ss_pred Cchhhh-------ccCCccceecCCCChHhHHHHHHhh
Q 044195 326 NLRVTV-------NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 326 ~~~~~~-------~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
+ +.-. .-...+.+.+..-+.+++..+++-.
T Consensus 309 ~-EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 D-EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred H-HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 3 2211 1134577889999999999888754
No 285
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.24 Score=52.84 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=89.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCh---h-----hhccCCceEEEEe-cCCCCHHHHHHHHHHhccCCCCCCCcHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDD---R-----VQRRFQIKAWTFV-SEDFNVFRVTKSILKSITNDQSKDDDLNWVQE 278 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~---~-----~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 278 (1024)
..+..++|..|.||+++|..+.+.. . ...+-+...+++. +......++ +++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 4566799999999999999987621 0 0111112333321 111122111 12222221110
Q ss_pred HHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhhhc-cCCccceecCCCChHhHHHHHHhh
Q 044195 279 KLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVTVN-MGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 279 ~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
.-.+.+=++|+|++..-+....+.+...+.....++.+|++|.. ..+... ....+.+++.++++++..+.+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 00246779999999776666777777777766667777765543 333322 234578999999999998877654
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 357 SLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
+. + ++.+..++...+|.=-|+..+
T Consensus 162 --~~-----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 162 --NK-----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred --CC-----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 11 1 144566666677633455443
No 286
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.08 E-value=0.03 Score=64.33 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=41.4
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF 245 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 245 (1024)
++--.+-++++..||..... +....+++.++|++|+||||.++.++++ -.|+.+=|.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 44445678889999976532 2234579999999999999999999973 2345555643
No 287
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.08 E-value=0.028 Score=58.32 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=55.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEecCCCC-HHHHHHHHHHhccCC-------CCCCCcHH---
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVSEDFN-VFRVTKSILKSITND-------QSKDDDLN--- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~--- 274 (1024)
...-++|.|.+|+|||||+.++++ ....+|+ ..+++-+++... ..++.+++.+.-... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999998 4554553 455666766554 455666655432111 11111111
Q ss_pred --HHHHHHHHHh--C-CCceeEEeecc
Q 044195 275 --WVQEKLKKQL--S-GKKFLLVLDDV 296 (1024)
Q Consensus 275 --~~~~~l~~~l--~-~~~~LlVlDd~ 296 (1024)
...-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223345555 3 89999999999
No 288
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.076 Score=52.71 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=40.7
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF 238 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f 238 (1024)
+++=|-+..++++++.+.-+-.. +-..++-|..+|++|.|||-+|++.+. +....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchH
Confidence 34667899999998877543211 223567789999999999999999886 444444
No 289
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.031 Score=58.30 Aligned_cols=88 Identities=23% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh-c---cC-CCCCCCcHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS-I---TN-DQSKDDDLNWVQEKL 280 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l---~~-~~~~~~~~~~~~~~l 280 (1024)
+..+++=|+|+.|+||||+|.+++- ..+..-..++|++....+++..+.. +... + .. .+........+...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 5678999999999999999999886 3444455889999999998876643 3333 2 11 111222222334444
Q ss_pred HHHhCCCceeEEeecc
Q 044195 281 KKQLSGKKFLLVLDDV 296 (1024)
Q Consensus 281 ~~~l~~~~~LlVlDd~ 296 (1024)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444445679999998
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.021 Score=62.35 Aligned_cols=87 Identities=22% Similarity=0.169 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccC--CceEEEEecC-CCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRF--QIKAWTFVSE-DFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (1024)
.+++.++|+.|+||||++.+++.. ....+ ..+.+++... .....+.++...+.++.+.....+...+...+. .+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-EL 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hh
Confidence 469999999999999999999873 22233 3445555332 223455666666666554433333333333333 33
Q ss_pred CCCceeEEeeccCC
Q 044195 285 SGKKFLLVLDDVWN 298 (1024)
Q Consensus 285 ~~~~~LlVlDd~~~ 298 (1024)
.++ -+++||..-.
T Consensus 214 ~~~-DlVLIDTaG~ 226 (374)
T PRK14722 214 RNK-HMVLIDTIGM 226 (374)
T ss_pred cCC-CEEEEcCCCC
Confidence 444 5677998843
No 291
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.034 Score=54.41 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC--CCHHHHHHHHHHhccCCCC--C-------CCcHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED--FNVFRVTKSILKSITNDQS--K-------DDDLNWV 276 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~--~-------~~~~~~~ 276 (1024)
..+++|.|+.|.|||||.+.++.-. ....+.+++.-... ...... +..+..+..... . -...+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 3589999999999999999998732 22334443321110 011111 110000000000 0 0011122
Q ss_pred HHHHHHHhCCCceeEEeeccCCC-CHHHHHHhhcCCCCCCCCcEEEEEcCCchhhh
Q 044195 277 QEKLKKQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTV 331 (1024)
Q Consensus 277 ~~~l~~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 331 (1024)
.-.+.+.+..++-++++|+-... +......+...+.....+..||++|.+.....
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 23355666778889999987432 22222222222221112467888888765543
No 292
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.98 E-value=0.046 Score=54.02 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=63.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEec--CCCCHHHH------HHHHHHhccCCCC-----C-CCcH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVS--EDFNVFRV------TKSILKSITNDQS-----K-DDDL 273 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~------~~~il~~l~~~~~-----~-~~~~ 273 (1024)
..+++|.|+.|.|||||++.++... ....+.+++.-. ...+.... .-++++.++.... . -..-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3589999999999999999998732 234444544311 11122111 1113444433211 1 1122
Q ss_pred HHHHHHHHHHhCCCceeEEeeccCCC-CHHHHHHhhcCCCCC-CC-CcEEEEEcCCchhh
Q 044195 274 NWVQEKLKKQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAG-AP-GSKIVVTTRNLRVT 330 (1024)
Q Consensus 274 ~~~~~~l~~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~-~~-gs~ilvTtR~~~~~ 330 (1024)
+...-.+.+.+-..+-++++|+--.. +....+.+...+... .. |..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23333456667778889999987332 222333333333221 12 56788888775543
No 293
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.029 Score=63.26 Aligned_cols=89 Identities=17% Similarity=0.079 Sum_probs=48.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
..++|+|+|++|+||||++..++.....+.....+..++... .....+.++.....++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999998886221111123444554422 1122333333333343322222333444444433 33
Q ss_pred CCceeEEeeccC
Q 044195 286 GKKFLLVLDDVW 297 (1024)
Q Consensus 286 ~~~~LlVlDd~~ 297 (1024)
..-+||+|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35688899874
No 294
>PTZ00494 tuzin-like protein; Provisional
Probab=95.97 E-value=0.44 Score=51.86 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=102.8
Q ss_pred cccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 178 VNEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
.....+|.|+++-..+...|.+.+. ..++++.+.|.-|.||++|.+.....+. -..++|++....+ -++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED---tLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED---TLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---hHH
Confidence 3456799999999888888887753 6789999999999999999998886332 3567888877654 456
Q ss_pred HHHHhccCCCCCC--CcHHHHHHHHHH---HhCCCceeEEeeccCCCC-HHHHHHhhcCCCCCCCCcEEEEEcCCchhhh
Q 044195 258 SILKSITNDQSKD--DDLNWVQEKLKK---QLSGKKFLLVLDDVWNEN-YEYWSIFSRPFGAGAPGSKIVVTTRNLRVTV 331 (1024)
Q Consensus 258 ~il~~l~~~~~~~--~~~~~~~~~l~~---~l~~~~~LlVlDd~~~~~-~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 331 (1024)
.+...++.+.-+. +-.+-+.+.... ...++.-+||+-=-...+ ...+.+... +.....-++|++---.+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhhch
Confidence 6777777654321 223333333322 245666666664321111 123333222 222234567776544333211
Q ss_pred ---ccCCccceecCCCChHhHHHHHHhh
Q 044195 332 ---NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 332 ---~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
....-..|.+++++.++|.++....
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhcc
Confidence 1123357899999999998887653
No 295
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.056 Score=63.21 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=75.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
...+.+.++|++|.|||.||+++++ ..+..|-.+ ... +++... -......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v-----~~~--------~l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISV-----KGS--------ELLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEe-----eCH--------HHhccc-----cchHHHHHHHHHHHHHc
Confidence 4566899999999999999999998 334444222 111 111111 11112223333444446
Q ss_pred CCceeEEeeccCC-----C-C-----HHHHHHhhcCCCCCC--CCcEEEEEcCCchhhh-cc----CCccceecCCCChH
Q 044195 286 GKKFLLVLDDVWN-----E-N-----YEYWSIFSRPFGAGA--PGSKIVVTTRNLRVTV-NM----GADQAYQLKELSND 347 (1024)
Q Consensus 286 ~~~~LlVlDd~~~-----~-~-----~~~~~~l~~~~~~~~--~gs~ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ 347 (1024)
..++.|++|++.. . . ......+...+.... .+..||-||-.+.... .+ .-...+.+++-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999833 1 1 123444444443222 3333444554433222 11 12346778888889
Q ss_pred hHHHHHHhhhc
Q 044195 348 DCLCLLTQISL 358 (1024)
Q Consensus 348 ea~~lf~~~a~ 358 (1024)
+..++|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 296
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.0032 Score=63.04 Aligned_cols=61 Identities=28% Similarity=0.340 Sum_probs=26.3
Q ss_pred CCCCceEEEEeCCC--CCcccCCccccCCCCCcEeeccCCCcccc--CcccccCCCCcEEecCCC
Q 044195 590 LDLPRLRVFSLCGY--CNIIDLPNEIGNLKHLRFLNLSRTNIQIL--PQSINSLYNLHTVLLEDC 650 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~--~~l~~lp~~l~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~l~~~ 650 (1024)
..+++|+.|.++.| .....++-...++++|++|++++|+|..+ -.....+.+|..|++.+|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 44445555555544 22223333333445555555555544421 011333444445555554
No 297
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.94 E-value=0.024 Score=61.84 Aligned_cols=134 Identities=13% Similarity=-0.002 Sum_probs=73.0
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.++|+...+.++.+.+.... ....-|.|+|..|+||+++|+.+... ....-...+.|+++... ...+...++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 48999998888888887653 23346889999999999999998852 11111234455665532 2222222221
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEcCCc
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTTRNL 327 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~~ 327 (1024)
.-.+...+... .....+ -....=.|+||++..-.......+...+..+. ...+||.||...
T Consensus 80 ~~~~~~~g~~~--~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCccc--ccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11100000000 000111 12233468899997766655666554443221 135888887653
No 298
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.042 Score=54.67 Aligned_cols=55 Identities=29% Similarity=0.242 Sum_probs=39.1
Q ss_pred ccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC
Q 044195 182 KVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF 238 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f 238 (1024)
++=|-.+.++++.+...-+--. +-..++-|.++|++|.|||-+|++|+| +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 3446677788877765433210 223567789999999999999999999 665555
No 299
>PHA02244 ATPase-like protein
Probab=95.93 E-value=0.036 Score=59.67 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
-|.|+|++|+|||+||++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999997
No 300
>PRK14974 cell division protein FtsY; Provisional
Probab=95.92 E-value=0.053 Score=58.63 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=48.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhcc-CCceEEEEecCCCC--HHHHHHHHHHhccCCCC---CCCcHHHH-HHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-FQIKAWTFVSEDFN--VFRVTKSILKSITNDQS---KDDDLNWV-QEK 279 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~---~~~~~~~~-~~~ 279 (1024)
...+|.++|++|+||||++..++.. .... + .++.+. .+.+. ..+.++.....++.+.. ...+...+ ...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 4689999999999999988888863 3222 3 233343 23332 33445556666654321 12222222 233
Q ss_pred HHHHhCCCceeEEeeccCC
Q 044195 280 LKKQLSGKKFLLVLDDVWN 298 (1024)
Q Consensus 280 l~~~l~~~~~LlVlDd~~~ 298 (1024)
+...-....-+|++|....
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 3332223334999998844
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.92 E-value=0.048 Score=61.44 Aligned_cols=87 Identities=16% Similarity=0.045 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC-CHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF-NVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (1024)
.+++.++|++|+||||++..++........-..+..|+..... ...+.++...+.++.+.....+...+...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999998887632211222345566543321 122333333444443332333444455545432 3
Q ss_pred CceeEEeecc
Q 044195 287 KKFLLVLDDV 296 (1024)
Q Consensus 287 ~~~LlVlDd~ 296 (1024)
..-+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3568999976
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.92 E-value=0.029 Score=60.56 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=40.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhc----cCCceEEEEecCCCCHHHHHHHHHHhcc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQR----RFQIKAWTFVSEDFNVFRVTKSILKSIT 264 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (1024)
....++.|+|.+|+|||+|+..++....... .-..++|++....++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3467999999999999999999875222211 1135789998887777653 44555544
No 303
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.035 Score=61.06 Aligned_cols=24 Identities=29% Similarity=0.182 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...++.|+|++|+||||++..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 304
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.86 E-value=0.0052 Score=57.83 Aligned_cols=36 Identities=31% Similarity=0.197 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF 245 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 245 (1024)
..+|.|+|.+|+||||||+++.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 5554445555554
No 305
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.057 Score=55.09 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=67.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChh-----hh------ccC---CceEEEEecC----CC--C-----------------
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDR-----VQ------RRF---QIKAWTFVSE----DF--N----------------- 251 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~-----~~------~~f---~~~~wv~~~~----~~--~----------------- 251 (1024)
.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.=.. .+ +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999986211 00 001 1344543100 00 0
Q ss_pred -----HHHHHHHHHHhccCCCCC------CCcHHHHHHHHHHHhCCCceeEEeeccC----CCCHHHHHHhhcCCCCCCC
Q 044195 252 -----VFRVTKSILKSITNDQSK------DDDLNWVQEKLKKQLSGKKFLLVLDDVW----NENYEYWSIFSRPFGAGAP 316 (1024)
Q Consensus 252 -----~~~~~~~il~~l~~~~~~------~~~~~~~~~~l~~~l~~~~~LlVlDd~~----~~~~~~~~~l~~~~~~~~~ 316 (1024)
-.+...+.+++++...-. -.--+...-.+.+.|..++=|++||.-- .......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 124445555555443211 1222333446678889999999999742 22333333344444433
Q ss_pred CcEEEEEcCCchhh
Q 044195 317 GSKIVVTTRNLRVT 330 (1024)
Q Consensus 317 gs~ilvTtR~~~~~ 330 (1024)
|.-||++|-+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 78899999886543
No 306
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.082 Score=57.20 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-CCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-FNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL- 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l- 284 (1024)
..+++.|+|+.|+||||++..++.. ....-..+.+|++... ....+.++...+.++.+.....+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4689999999999999999999863 2222234556665432 23455666666666654333445666655554432
Q ss_pred CCCceeEEeeccCC
Q 044195 285 SGKKFLLVLDDVWN 298 (1024)
Q Consensus 285 ~~~~~LlVlDd~~~ 298 (1024)
.+..-+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 24457889998744
No 307
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0037 Score=37.04 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=8.7
Q ss_pred CcEeeccCCCccccCccc
Q 044195 619 LRFLNLSRTNIQILPQSI 636 (1024)
Q Consensus 619 L~~L~L~~~~i~~lp~~i 636 (1024)
|++|||++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 308
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.82 E-value=0.038 Score=67.29 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=73.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.++|+...+.++.+.+.... ....-|.|+|..|+|||++|+.+.+.. ...-...+.+++..-.. ..+-..+..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~~-~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMPA-GLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCCh-hHhhhhhcC
Confidence 58999988888877776542 233478999999999999999998732 11223445566654321 112222221
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC-----------CCCcEEEEEcCCc
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG-----------APGSKIVVTTRNL 327 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~-----------~~gs~ilvTtR~~ 327 (1024)
...+...+.. ......+ -....=.|+||++..-.......+...+..+ ..+.|||.||...
T Consensus 450 ~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111111100 0001111 1223457999999776655555555444221 1345888888653
No 309
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.79 E-value=0.0044 Score=62.04 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=60.3
Q ss_pred CCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCC--Ccc-ccCcccccCCCCcEEecCCCccccccc--cccCCCCc
Q 044195 591 DLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRT--NIQ-ILPQSINSLYNLHTVLLEDCRRLKKLC--KDMGNLTK 665 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~ 665 (1024)
.+..|..|++.++ .++.+ ..+..|++|++|.++.| .+. .++-...++++|++|++++| .++.+- ..+..+.+
T Consensus 41 ~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 3344555555554 34443 23456778888888888 444 55555666788888888887 444321 12456677
Q ss_pred ccEEeccCCccccccCcc----CCCCCCCCccCceee
Q 044195 666 LHHLRNSNVHSLEEMPKG----FGKLTCLTTLCRFVV 698 (1024)
Q Consensus 666 L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~ 698 (1024)
|..|++.+|. ...+-.. +.-+++|..|+.+.+
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhcccccccc
Confidence 7788888776 3222111 333556666654444
No 310
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.78 E-value=0.052 Score=60.92 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=47.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCCCC---CCcHHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQSK---DDDLNWVQEKLKK 282 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~ 282 (1024)
.+.+|.++|.+|+||||.|..++.. ....-..+..|++.. .....+.++.+..+++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4579999999999999999999873 332212333444332 112344555666665443221 1222232222223
Q ss_pred HhCCCceeEEeecc
Q 044195 283 QLSGKKFLLVLDDV 296 (1024)
Q Consensus 283 ~l~~~~~LlVlDd~ 296 (1024)
.+.+. -+||+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 33333 56777776
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.76 E-value=0.03 Score=54.32 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=60.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC--CCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED--FNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (1024)
.+++|.|+.|.|||||.+.++... ....+.+++.-..- .+..+..+ ..++-... -..-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence 589999999999999999998732 23345555432111 11111111 11111100 11222333445666777
Q ss_pred CceeEEeeccCCC-CHHHHHHhhcCCCCC-CCCcEEEEEcCCchh
Q 044195 287 KKFLLVLDDVWNE-NYEYWSIFSRPFGAG-APGSKIVVTTRNLRV 329 (1024)
Q Consensus 287 ~~~LlVlDd~~~~-~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~ 329 (1024)
++-++++|+--.. +......+...+... ..|..||++|.+...
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 7889999987432 222233333322211 236678888887653
No 312
>PRK10867 signal recognition particle protein; Provisional
Probab=95.76 E-value=0.048 Score=61.04 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+.+|.++|++|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999998888876
No 313
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.74 E-value=0.025 Score=61.66 Aligned_cols=132 Identities=14% Similarity=0.024 Sum_probs=68.0
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS 262 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (1024)
+||+...+.++.+.+.... ....-|.|+|..|+||+++|+.+.... ...-...+-|+++.-. ...+-..+...
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s--~r~~~pfv~vnc~~~~-~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLS--KRWQGPLVKLNCAALS-ENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhc--CccCCCeEEEeCCCCC-hHHHHHHHhcc
Confidence 4677777777777776543 233568999999999999999998622 1111233445555432 11111222211
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEcCC
Q 044195 263 ITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTTRN 326 (1024)
Q Consensus 263 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~ 326 (1024)
-.+...+.... ....+ -....-.|+||++..-.......+...+..+. ...+||.||..
T Consensus 74 ~~g~~~ga~~~--~~G~~---~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 74 EAGAFTGAQKR--HQGRF---ERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ccccccCcccc--cCCch---hhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11000000000 00001 12234568999997655555555544433221 23588888754
No 314
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.72 E-value=0.075 Score=52.20 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=43.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-CCHHHHHHHHHHhccCC---CCCCCcHHHHH-HHHHHHh
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-FNVFRVTKSILKSITND---QSKDDDLNWVQ-EKLKKQL 284 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~---~~~~~~~~~~~-~~l~~~l 284 (1024)
++.++|++|+||||++..++.. ....=..++.++.... ....+.+...+...+.+ .....+...+. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999998873 3222123344443321 12233333334433211 11223333333 3333334
Q ss_pred CCCceeEEeeccC
Q 044195 285 SGKKFLLVLDDVW 297 (1024)
Q Consensus 285 ~~~~~LlVlDd~~ 297 (1024)
.+..-++|+|..-
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 4444466677763
No 315
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.71 E-value=0.038 Score=57.39 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=54.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCC------------------
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQ------------------ 267 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 267 (1024)
+...++.|+|.+|+|||++|.++... ...+=..++|++..+. ..++.+.+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 35679999999999999999999752 2223346778887654 34444443 2222111
Q ss_pred --CCCCcHHHHHHHHHHHhCC-CceeEEeeccC
Q 044195 268 --SKDDDLNWVQEKLKKQLSG-KKFLLVLDDVW 297 (1024)
Q Consensus 268 --~~~~~~~~~~~~l~~~l~~-~~~LlVlDd~~ 297 (1024)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334556666666653 66689999974
No 316
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.70 E-value=0.36 Score=52.11 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=33.5
Q ss_pred ceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044195 338 AYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAA 387 (1024)
Q Consensus 338 ~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 387 (1024)
++++++++.+|+..++..++-..-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999998876532221 111334456677777789999643
No 317
>PRK08233 hypothetical protein; Provisional
Probab=95.67 E-value=0.03 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|.+|+||||+|..++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 37999999999999999999987
No 318
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.66 E-value=0.09 Score=51.10 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=58.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEE-------EecCCCCH--HHHHHHHHHhccCCCCCCCcHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWT-------FVSEDFNV--FRVTKSILKSITNDQSKDDDLNWVQE 278 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv-------~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~ 278 (1024)
..+++|+|+.|.|||||++.++..... ..+.+++ .+.+.... ..+...+... ....-..-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 358999999999999999999874221 1122211 11222111 1222222110 1111222233344
Q ss_pred HHHHHhCCCceeEEeeccCCC-CHHHHHHhhcCCCCCCCCcEEEEEcCCchhh
Q 044195 279 KLKKQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAGAPGSKIVVTTRNLRVT 330 (1024)
Q Consensus 279 ~l~~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~ 330 (1024)
.+.+.+-.++-++++|+--.. +......+...+... +..||++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 556666778889999986331 222222222222221 35677777776554
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.65 E-value=0.049 Score=53.19 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=59.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCh---hhhcc---CC--ceEEEEecCCCCHHHHHHHHHHhccCCCC-CC------Cc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDD---RVQRR---FQ--IKAWTFVSEDFNVFRVTKSILKSITNDQS-KD------DD 272 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~~------~~ 272 (1024)
..+++|+|+.|+|||||.+.+..+. ++... |. .+.|+ .+ .+.++.++.... .. ..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999986321 11111 10 12232 11 345555553321 11 11
Q ss_pred HHHHHHHHHHHhCCC--ceeEEeeccCCC-CHHHHHHhhcCCCCC-CCCcEEEEEcCCchhh
Q 044195 273 LNWVQEKLKKQLSGK--KFLLVLDDVWNE-NYEYWSIFSRPFGAG-APGSKIVVTTRNLRVT 330 (1024)
Q Consensus 273 ~~~~~~~l~~~l~~~--~~LlVlDd~~~~-~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~~ 330 (1024)
-+...-.+.+.+..+ +-++++|+--.. +....+.+...+... ..|..||++|.+....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 222333455556666 788999987332 222233333222211 1466788888876654
No 320
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.65 E-value=0.075 Score=55.17 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=34.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
...++.|.|++|+|||++|.++... ....-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 5579999999999999999998762 223345788888765 34444443
No 321
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.64 E-value=0.045 Score=54.86 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=43.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhcc-CC---ceEEEEecCCCCHHHHHHHHHHhc----cCCCCCCCcHHHHHHHHH
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRR-FQ---IKAWTFVSEDFNVFRVTKSILKSI----TNDQSKDDDLNWVQEKLK 281 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~---~~~wv~~~~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~ 281 (1024)
||+|.|++|+||||+|+++.. ..... .. ....+....-........ .-... ....+...+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999987 33321 22 133333322222222211 11111 112224466777777777
Q ss_pred HHhCCCceeE
Q 044195 282 KQLSGKKFLL 291 (1024)
Q Consensus 282 ~~l~~~~~Ll 291 (1024)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 322
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.011 Score=54.46 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
--|+|.|++|+||||+++.+++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 4689999999999999999997
No 323
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.61 E-value=0.27 Score=52.48 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=39.1
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (1024)
.++=..+....+..++... +.|.|.|++|+||||+|+.++. +.... .+.|.+....+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 3444445556677776432 4699999999999999999997 33322 234555555444433
No 324
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.61 E-value=0.057 Score=58.55 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhh----ccCCceEEEEecCCCCHHHHHHHHHHhccCCCC---------CCCc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQ----RRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KDDD 272 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 272 (1024)
....++-|+|.+|+|||+|+.+++-..... ..-..++|++....|++.++.+ +++.++.+.. ...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 355788999999999999999987432221 1124788999999998877654 5666554321 1123
Q ss_pred HHHHHHH---HHHHh-CCCceeEEeecc
Q 044195 273 LNWVQEK---LKKQL-SGKKFLLVLDDV 296 (1024)
Q Consensus 273 ~~~~~~~---l~~~l-~~~~~LlVlDd~ 296 (1024)
.+.+... +...+ ..+--|||+|.+
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3332222 22233 234557888887
No 325
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.065 Score=64.34 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=72.6
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCC--CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADD--GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
.++|-++.+..|.+.+......... ......+.|+.|+|||.||++++. .+-+..+..+-++.++-.. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e-------v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE-------V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh-------h
Confidence 4678888888888888765431111 456788899999999999999987 3333334445554443211 2
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCce-eEEeeccCCCCHHHHHHhhcCCC
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKF-LLVLDDVWNENYEYWSIFSRPFG 312 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDd~~~~~~~~~~~l~~~~~ 312 (1024)
.+.++.++. - -..+....+.+.++.++| +|+||||...+......+...+.
T Consensus 634 skligsp~g-y-vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 634 SKLIGSPPG-Y-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhccCCCcc-c-ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 222333221 1 111122356666777776 77899998777766664444443
No 326
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.59 E-value=0.06 Score=58.45 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhc----cCCceEEEEecCCCCHHHHHHHHHHhccC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQR----RFQIKAWTFVSEDFNVFRVTKSILKSITN 265 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 265 (1024)
....++-|+|.+|+|||++|..++....... .-..++|++....+...++ .++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3457889999999999999998875322211 1136899999998888776 455666543
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.59 E-value=0.074 Score=50.22 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=55.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
.+++|+|..|.|||||++.++... ....+.+|+.-.. .++--.. -..-+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhcCC
Confidence 589999999999999999998732 1223444432100 0000000 1111222334556666778
Q ss_pred eeEEeeccCCC-CHHHHHHhhcCCCCCCCCcEEEEEcCCchhh
Q 044195 289 FLLVLDDVWNE-NYEYWSIFSRPFGAGAPGSKIVVTTRNLRVT 330 (1024)
Q Consensus 289 ~LlVlDd~~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~ 330 (1024)
-++++|+--.. +......+...+... +..||++|.+.+..
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 89999987331 222333333222222 24677777765544
No 328
>PRK07667 uridine kinase; Provisional
Probab=95.58 E-value=0.027 Score=56.35 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666665443 4558999999999999999999987
No 329
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.57 E-value=0.0086 Score=58.15 Aligned_cols=42 Identities=29% Similarity=0.177 Sum_probs=30.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhh-ccCCceEEEEecCCCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQ-RRFQIKAWTFVSEDFN 251 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~ 251 (1024)
..++.+.|+.|+|||.+|++++. ... ......+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46889999999999999999997 333 3444556666554333
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.55 E-value=0.073 Score=56.13 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCH--HHHHHHHHHhccCCC---CCCCcHHH-HHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNV--FRVTKSILKSITNDQ---SKDDDLNW-VQEK 279 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~---~~~~~~~~-~~~~ 279 (1024)
...+++.++|++|+||||++..++.. ....-..+.+++.. .+.. .+-++...+..+.+. ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 35689999999999999999998863 33332344455443 3333 233344444443221 11122222 2233
Q ss_pred HHHHhCCCceeEEeeccC
Q 044195 280 LKKQLSGKKFLLVLDDVW 297 (1024)
Q Consensus 280 l~~~l~~~~~LlVlDd~~ 297 (1024)
+........-++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444455688899873
No 331
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.52 E-value=0.049 Score=59.29 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=40.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhc----cCCceEEEEecCCCCHHHHHHHHHHhcc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQR----RFQIKAWTFVSEDFNVFRVTKSILKSIT 264 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (1024)
...++-|+|++|+|||+++.+++....... .=..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 467999999999999999999986432211 11378999998888877654 4444443
No 332
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.042 Score=53.95 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=60.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccC--CCC---C---------CCcH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITN--DQS---K---------DDDL 273 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~---~---------~~~~ 273 (1024)
..+++|+|+.|.|||||++.++... ....+.+++.-....... ..+...++- +.. . -..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999998732 123344443211100000 011111110 000 0 0111
Q ss_pred HHHHHHHHHHhCCCceeEEeeccCCC-CHHHHHHhhcCCCCC-CCCcEEEEEcCCchhhh
Q 044195 274 NWVQEKLKKQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAG-APGSKIVVTTRNLRVTV 331 (1024)
Q Consensus 274 ~~~~~~l~~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~~~ 331 (1024)
+...-.+.+.+..++-++++|+--.. +......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22233456667788899999997432 222222332222211 13567888888765543
No 333
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.031 Score=55.34 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=43.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh--ccCCCCCCCcHHHHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS--ITNDQSKDDDLNWVQEKLKKQ 283 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~--l~~~~~~~~~~~~~~~~l~~~ 283 (1024)
..+.+|+|.|.+|+||||+|+.++. ...... ++-++...-+. ..-.....+. .....+..-+.+-+...|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4568999999999999999999997 444332 11111111111 0000111111 112223455667777778777
Q ss_pred hCCCc
Q 044195 284 LSGKK 288 (1024)
Q Consensus 284 l~~~~ 288 (1024)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77777
No 334
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.059 Score=59.51 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=53.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhc--cCCceEEEEecCCCC--HHHHHHHHHHhccCCCCCCCcHHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQR--RFQIKAWTFVSEDFN--VFRVTKSILKSITNDQSKDDDLNWVQEKLKK 282 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 282 (1024)
..++|.++|+.|+||||.+..++....... +-..+..+++. .+. ....++..++.++.+.........+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999998886322211 11234444443 333 3334556666665543334445555555544
Q ss_pred HhCCCceeEEeeccCC
Q 044195 283 QLSGKKFLLVLDDVWN 298 (1024)
Q Consensus 283 ~l~~~~~LlVlDd~~~ 298 (1024)
. .+.-+|++|....
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4466899998844
No 335
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.027 Score=64.13 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=48.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC--CHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF--NVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (1024)
....|.|.|+.|+|||+||+++++... ......+.+|+++.-. ..+.+++. +...+...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 446789999999999999999998443 4444556677766432 12222211 122344556
Q ss_pred CCCceeEEeecc
Q 044195 285 SGKKFLLVLDDV 296 (1024)
Q Consensus 285 ~~~~~LlVlDd~ 296 (1024)
...+-+|||||+
T Consensus 492 ~~~PSiIvLDdl 503 (952)
T KOG0735|consen 492 WYAPSIIVLDDL 503 (952)
T ss_pred hhCCcEEEEcch
Confidence 778999999998
No 336
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.43 E-value=0.1 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999875
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.39 E-value=0.084 Score=54.96 Aligned_cols=142 Identities=14% Similarity=0.175 Sum_probs=70.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccC---------C-ceEEEEecCCC-CHHHHHHHHHHhccCCCC--------C-
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRF---------Q-IKAWTFVSEDF-NVFRVTKSILKSITNDQS--------K- 269 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---------~-~~~wv~~~~~~-~~~~~~~~il~~l~~~~~--------~- 269 (1024)
+..|+|++|+|||+||..++........| . .+++++...+. .+.+-+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56789999999999999988632111111 1 34555554443 244445555554421100 0
Q ss_pred -------C---CcHHHHHHHHHH-HhCCCceeEEeeccCC------CCHHHHHHhhcCCCC--CCCCcEEEEEcCCchhh
Q 044195 270 -------D---DDLNWVQEKLKK-QLSGKKFLLVLDDVWN------ENYEYWSIFSRPFGA--GAPGSKIVVTTRNLRVT 330 (1024)
Q Consensus 270 -------~---~~~~~~~~~l~~-~l~~~~~LlVlDd~~~------~~~~~~~~l~~~~~~--~~~gs~ilvTtR~~~~~ 330 (1024)
. .........+.+ ....+.-+||+|-+-. .+......+...+.. ...|..||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 001112223333 2345678999996521 122333333332221 12466777777654221
Q ss_pred h-------cc-C-------CccceecCCCChHhHHH
Q 044195 331 V-------NM-G-------ADQAYQLKELSNDDCLC 351 (1024)
Q Consensus 331 ~-------~~-~-------~~~~~~l~~L~~~ea~~ 351 (1024)
. .. + ..-.+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 01 1 11356777788887766
No 338
>PRK13695 putative NTPase; Provisional
Probab=95.38 E-value=0.014 Score=57.33 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 044195 210 VFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998863
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.033 Score=51.50 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=31.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCC
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITND 266 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 266 (1024)
+|.|.|++|+||||+|+.++.+. .-.| | +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~--gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL--GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh--CCce-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999732 2111 1 2346778888777654
No 340
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.35 E-value=0.063 Score=62.70 Aligned_cols=135 Identities=12% Similarity=0.059 Sum_probs=75.9
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
..++|+...++++.+.+.... ....-|.|+|..|+|||++|+.+.+.. ...-...+.|+++.-.+ ..+-..+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~v~c~~~~~-~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAAS--PRADKPLVYLNCAALPE-SLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEEEEcccCCh-HHHHHHhc
Confidence 458999999999888887653 234578899999999999999998732 11223455666665432 11111222
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEcCCc
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTTRNL 327 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~~ 327 (1024)
....+...+... .....+. ....=.|+||++..-.......+...+..+. ...|||.||...
T Consensus 260 G~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 260 GHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred CccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 111111000000 0000111 1223357899997766666666655443221 245888888653
No 341
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.35 E-value=0.054 Score=53.18 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=58.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC--CCCHHHHHHHHHHhccCCCC--C-------CCcHHHHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE--DFNVFRVTKSILKSITNDQS--K-------DDDLNWVQ 277 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~--~-------~~~~~~~~ 277 (1024)
.+++|+|+.|.|||||++.++... ....+.+++.-.. ........+.+ ..+..... . -..-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence 589999999999999999998732 2233434332111 11111111111 00100000 0 01112223
Q ss_pred HHHHHHhCCCceeEEeeccCCC-CHHHHHHhhcCCCCC-CCCcEEEEEcCCchhhh
Q 044195 278 EKLKKQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAG-APGSKIVVTTRNLRVTV 331 (1024)
Q Consensus 278 ~~l~~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~~~ 331 (1024)
-.+.+.+..++-++++|+-... +......+...+... ..|..||++|.+.....
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3455666677889999987432 222222222222211 23667888888765543
No 342
>PRK05439 pantothenate kinase; Provisional
Probab=95.34 E-value=0.091 Score=55.97 Aligned_cols=80 Identities=20% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC--CceEEEEecCCCCHHHHHH--HHHHhccCCCCCCCcHHHHHHHH
Q 044195 205 DDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF--QIKAWTFVSEDFNVFRVTK--SILKSITNDQSKDDDLNWVQEKL 280 (1024)
Q Consensus 205 ~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~--~il~~l~~~~~~~~~~~~~~~~l 280 (1024)
.+...+|+|.|.+|+||||+|+.+.. ...... ..+.-++...-....+.+. .++..- ..++.-+.+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~k--g~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRK--GFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhhhccccC--CCcccccHHHHHHHH
Confidence 35678999999999999999998886 332221 2233444333222222221 111111 123455666777667
Q ss_pred HHHhCCCc
Q 044195 281 KKQLSGKK 288 (1024)
Q Consensus 281 ~~~l~~~~ 288 (1024)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66666654
No 343
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0037 Score=59.88 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=58.8
Q ss_pred ccEEEEecccCccc---cCCCCCCcCEEEEccCCCccccC----CCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEe
Q 044195 914 LEKLVIQSCKQLLV---TIQCLPALSELQIRGCRRVVFSS----PIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLK 986 (1024)
Q Consensus 914 L~~L~l~~c~~l~~---~l~~l~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~ 986 (1024)
++.++.+++...-. -+.++++++.|.+.+|..+.... .+..++|+.|+|++|+.+++-....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 34445555543322 35667788888888888664321 136779999999999999988887888889999999
Q ss_pred eecCCCCCcc
Q 044195 987 IDSVRAPTYL 996 (1024)
Q Consensus 987 l~~c~~l~~l 996 (1024)
|.+.+.+...
T Consensus 183 l~~l~~v~~~ 192 (221)
T KOG3864|consen 183 LYDLPYVANL 192 (221)
T ss_pred hcCchhhhch
Confidence 8887665543
No 344
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.30 E-value=0.047 Score=58.19 Aligned_cols=83 Identities=22% Similarity=0.137 Sum_probs=50.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
..+++-|+|+.|+||||||..+.. ..+..-..++|++....++.... +.++.+.+ .....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHHH
Confidence 457999999999999999999887 44445567889998887766333 33333221 1223444445555
Q ss_pred HHhCC-CceeEEeecc
Q 044195 282 KQLSG-KKFLLVLDDV 296 (1024)
Q Consensus 282 ~~l~~-~~~LlVlDd~ 296 (1024)
+.++. ..-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 55543 4568999988
No 345
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.29 E-value=0.087 Score=54.40 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+...+|+|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.27 E-value=0.15 Score=54.45 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=35.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS 262 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (1024)
...++.|.|.+|+||||++.+++.... ..+=..++|++...+ ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 345889999999999999999887322 221346778877653 34555555444
No 347
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.26 E-value=0.069 Score=58.20 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=41.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhcc----CCceEEEEecCCCCHHHHHHHHHHhcc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR----FQIKAWTFVSEDFNVFRVTKSILKSIT 264 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (1024)
....++-|+|++|+|||++|.+++........ =..++||+....++..++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 34679999999999999999999863222111 1478999998888876654 4444443
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.26 E-value=0.086 Score=51.54 Aligned_cols=103 Identities=15% Similarity=0.017 Sum_probs=55.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE------ecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF------VSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLK 281 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 281 (1024)
..+++|.|+.|+|||||++.++.-.. ...+.+++. +.+... -..-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 35999999999999999999987321 222333321 111110 112223334456
Q ss_pred HHhCCCceeEEeeccCCC-CHHHHHHhhcCCCCC--CCCcEEEEEcCCchhhh
Q 044195 282 KQLSGKKFLLVLDDVWNE-NYEYWSIFSRPFGAG--APGSKIVVTTRNLRVTV 331 (1024)
Q Consensus 282 ~~l~~~~~LlVlDd~~~~-~~~~~~~l~~~~~~~--~~gs~ilvTtR~~~~~~ 331 (1024)
+.+..++-++++|+--.. +......+...+... ..+..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666778889999987332 222222222222211 12256777777655433
No 349
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.24 E-value=0.086 Score=58.12 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=49.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++ +.-+..++...+ ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3469999999999999999999873 3333346778876543 2222 222344443221 1233444444332
Q ss_pred HHhCCCceeEEeecc
Q 044195 282 KQLSGKKFLLVLDDV 296 (1024)
Q Consensus 282 ~~l~~~~~LlVlDd~ 296 (1024)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 346678999988
No 350
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.21 E-value=0.053 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+|++++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999997
No 351
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.20 E-value=0.024 Score=60.26 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=44.2
Q ss_pred cCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|+|.++.++++++.+.......+..-+++.+.|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999877544456778999999999999999999886
No 352
>PTZ00035 Rad51 protein; Provisional
Probab=95.20 E-value=0.13 Score=56.09 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhh----ccCCceEEEEecCCCCHHHHHHHHHHhccCCCC---------CCCc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQ----RRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KDDD 272 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 272 (1024)
....++.|+|.+|+|||+|+..++...+.. ..=..++|++....++..++ .++++.++.... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 356799999999999999999987532211 11235679998777777663 444555443221 1122
Q ss_pred HHHHHHHH---HHHh-CCCceeEEeecc
Q 044195 273 LNWVQEKL---KKQL-SGKKFLLVLDDV 296 (1024)
Q Consensus 273 ~~~~~~~l---~~~l-~~~~~LlVlDd~ 296 (1024)
.+.+...+ ...+ ..+--|||+|-+
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 23333322 2223 334558888887
No 353
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.20 E-value=0.064 Score=60.05 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+.++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999988886
No 354
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.053 Score=58.20 Aligned_cols=82 Identities=24% Similarity=0.253 Sum_probs=53.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLKK 282 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 282 (1024)
..+|.|-|.+|||||||..+++. +....- .++||+-.+...-. +--++.++...+ ...+.+.+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~- 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELE- 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHH-
Confidence 46899999999999999999998 444444 78888765543322 233445553332 2344554444444
Q ss_pred HhCCCceeEEeeccCC
Q 044195 283 QLSGKKFLLVLDDVWN 298 (1024)
Q Consensus 283 ~l~~~~~LlVlDd~~~ 298 (1024)
+.++-++|+|-+..
T Consensus 166 --~~~p~lvVIDSIQT 179 (456)
T COG1066 166 --QEKPDLVVIDSIQT 179 (456)
T ss_pred --hcCCCEEEEeccce
Confidence 36889999999843
No 355
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.18 E-value=0.021 Score=58.27 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 044195 211 FSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~ 230 (1024)
|.|.|++|+||||+|+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999986
No 356
>PTZ00301 uridine kinase; Provisional
Probab=95.16 E-value=0.026 Score=56.74 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 37999999999999999998876
No 357
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.13 E-value=0.21 Score=59.93 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=79.2
Q ss_pred ccccchhhHHHHHHHHHhCCC------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGL------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (1024)
++.|.+..++++.+.+..... .+..-.+-|.|+|++|+|||++|+.++.. ....| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 466766666555444432110 01112345999999999999999999873 32222 2222221 1
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC----------HHH----HHHhhcCCCC--CCCCcE
Q 044195 256 TKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN----------YEY----WSIFSRPFGA--GAPGSK 319 (1024)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~----------~~~----~~~l~~~~~~--~~~gs~ 319 (1024)
. .+ .. ......+...+...-...+++|+||+++.-. ... ...+...+.. ...+.-
T Consensus 222 ~-~~---~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V-EM---FV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H-Hh---hh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 00 00 0111223333333445578999999984310 111 1222222211 123445
Q ss_pred EEEEcCCchhhh-cc---C-CccceecCCCChHhHHHHHHhhhc
Q 044195 320 IVVTTRNLRVTV-NM---G-ADQAYQLKELSNDDCLCLLTQISL 358 (1024)
Q Consensus 320 ilvTtR~~~~~~-~~---~-~~~~~~l~~L~~~ea~~lf~~~a~ 358 (1024)
||.||...+... .. + -.+.+.+..-+.++..+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 555777654321 11 1 235677777777788888877653
No 358
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.12 E-value=0.074 Score=54.26 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 359
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.10 E-value=0.1 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987764
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.08 E-value=0.13 Score=49.35 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=59.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhc-cCCceE--EEEecCCCCHHHHHHHHHHh---ccCC-----CCCCCc---H
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQR-RFQIKA--WTFVSEDFNVFRVTKSILKS---ITND-----QSKDDD---L 273 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~~--wv~~~~~~~~~~~~~~il~~---l~~~-----~~~~~~---~ 273 (1024)
...|-|++..|.||||.|..++. +... .+...+ |+-..........+..+.-. .+.. .+...+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999988876 3222 232221 33222223444444432000 0110 000111 1
Q ss_pred HHHHHHHHHHhCC-CceeEEeeccCC---CCHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 274 NWVQEKLKKQLSG-KKFLLVLDDVWN---ENYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 274 ~~~~~~l~~~l~~-~~~LlVlDd~~~---~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
.......++.+.. +--|+|||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233334444544 445999999821 01112233344444444667999999975
No 361
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.53 Score=46.75 Aligned_cols=50 Identities=28% Similarity=0.209 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 182 KVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
++=|-+-.++++.+...-+-.+ +-..++-|.++|++|+|||.||++|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3556777777776655332110 2245678899999999999999999994
No 362
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.06 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 363
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.05 E-value=0.018 Score=53.35 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 044195 211 FSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~ 230 (1024)
|+|.|++|+||||+|+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 364
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.05 E-value=0.029 Score=56.94 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999874
No 365
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.04 E-value=0.11 Score=54.52 Aligned_cols=114 Identities=15% Similarity=-0.020 Sum_probs=59.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCC--------CCCCcHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQ--------SKDDDLNWVQE 278 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------~~~~~~~~~~~ 278 (1024)
..+.++|+|+.|.|||||.+.++... ....+.+++.-.+-. ..+-..++......-. +-...... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVG-IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEee-cchhHHHHHHHhcccccccccccccccccchH-HH
Confidence 45789999999999999999999732 222333443211100 0000122222211100 00011111 11
Q ss_pred HHHHHh-CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhh
Q 044195 279 KLKKQL-SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVT 330 (1024)
Q Consensus 279 ~l~~~l-~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~ 330 (1024)
-+...+ ...+-++++|.+. ..+.+..+...+. .|..||+||-+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 223333 3578899999983 3445555544443 477899999876553
No 366
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.04 E-value=0.06 Score=51.19 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 367
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.02 E-value=0.074 Score=53.54 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=52.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC-CHHHHHHHHHHhccCC-------CCCCCcHHH----
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF-NVFRVTKSILKSITND-------QSKDDDLNW---- 275 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 275 (1024)
...++|.|.+|+|||+|+.++++.. .-+.++++.+++.. ...++.+++...-..+ .........
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3578999999999999999998732 23344888887654 4566666664431111 111111111
Q ss_pred -HHHHHHHHh--CCCceeEEeecc
Q 044195 276 -VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 276 -~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
..-.+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 112223333 689999999999
No 368
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.01 E-value=0.016 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 369
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.41 Score=55.60 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=59.1
Q ss_pred ccccchhhHHHHHHHHHhCCCC------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLR------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (1024)
++=|-++.+.+|.+-+.-+-.. +-....-|.+||++|+|||-+|++|+.+ ..-. |++|-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--csL~-----FlSVKGP------ 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CSLN-----FLSVKGP------ 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ceee-----EEeecCH------
Confidence 4557788888887766432110 1122446889999999999999999983 3322 3444332
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCC
Q 044195 256 TKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWN 298 (1024)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~ 298 (1024)
+++...-+ ...+.+.+.+.+.-..++++|.||.+++
T Consensus 740 --ELLNMYVG-----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --ELLNMYVG-----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHHHhc-----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22222221 1223344444555567999999999954
No 370
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.0033 Score=60.22 Aligned_cols=59 Identities=22% Similarity=0.444 Sum_probs=34.1
Q ss_pred CCCCccEEEEecccCccc----cC-CCCCCcCEEEEccCCCccccCC---CCCCCccEEEEcCCCCc
Q 044195 910 RLLLLEKLVIQSCKQLLV----TI-QCLPALSELQIRGCRRVVFSSP---IDFSSLKSVFLGDIANQ 968 (1024)
Q Consensus 910 ~l~~L~~L~l~~c~~l~~----~l-~~l~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l 968 (1024)
.+++++.|.+.+|..+.. .+ +-.++|+.|+|++|+.++.... ..|++|+.|++.+.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 456666667777765421 12 2356777777777776654332 34566777766665443
No 371
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.6 Score=53.70 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=83.5
Q ss_pred cccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHH
Q 044195 183 VYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (1024)
+-|..+.++.+.+.+..+... +-....-|.++|++|+|||-||-+++.... .-+++|-.+ ++
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----El 737 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----EL 737 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----HH
Confidence 456667777777777655321 112334688999999999999999987322 123555443 22
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CHHHHHHhhcCCCC--CCCCcEEEE
Q 044195 256 TKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NYEYWSIFSRPFGA--GAPGSKIVV 322 (1024)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~~~~~~l~~~~~~--~~~gs~ilv 322 (1024)
+. ..+|. ..+.+...+.+.-.-+++++.||.+++- ++...+++...+.. +-.|.-|+-
T Consensus 738 L~---KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 738 LS---KYIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred HH---HHhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE
Confidence 21 12222 2334444455555679999999998541 23345555544432 235666665
Q ss_pred -EcCCchhhhcc---CCccc-eecCCCChHhHHHHHHhhh
Q 044195 323 -TTRNLRVTVNM---GADQA-YQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 323 -TtR~~~~~~~~---~~~~~-~~l~~L~~~ea~~lf~~~a 357 (1024)
|||..-+-..+ +.-.. +.-+.-++.|-.++|...+
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 55543222111 21122 2223334556667776543
No 372
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.84 E-value=0.067 Score=58.59 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=35.3
Q ss_pred CccccchhhHHHHHHHHHhC--------CCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRD--------GLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.++.+..+.-.+... .-...-..+.|.++|++|+|||++|+.++.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 34788888887776555531 000111346789999999999999999997
No 373
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.83 E-value=0.098 Score=54.99 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=31.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF 250 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 250 (1024)
...++.|.|++|+|||++|.+++.. ....=..++|++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESPA 76 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCCc
Confidence 4579999999999999999998763 22233467888876433
No 374
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.83 E-value=0.42 Score=44.81 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=75.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC-------------------hhhhccCC--ceEEEE--e------------------c
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND-------------------DRVQRRFQ--IKAWTF--V------------------S 247 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~-------------------~~~~~~f~--~~~wv~--~------------------~ 247 (1024)
..|+|+|+.|+||+||..-.+-- +.-+..|. .+-||. . .
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 47899999999999999777641 11111221 122221 0 1
Q ss_pred --CCCCHHHHHHHHHHhccCCCC------CCCcHHHHHHHHHHHhCCCceeEEeecc----CCCCHHHHHHhhcCCCCCC
Q 044195 248 --EDFNVFRVTKSILKSITNDQS------KDDDLNWVQEKLKKQLSGKKFLLVLDDV----WNENYEYWSIFSRPFGAGA 315 (1024)
Q Consensus 248 --~~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~~~~LlVlDd~----~~~~~~~~~~l~~~~~~~~ 315 (1024)
...+....-+..+.+++.... .-.--++..-.|.+.+...+-+++-|.- +..+-....++.-.+. ..
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re 195 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RE 195 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hh
Confidence 133455556677777765432 1223345556788888999999999864 2233333444433333 23
Q ss_pred CCcEEEEEcCCchhhhccCC
Q 044195 316 PGSKIVVTTRNLRVTVNMGA 335 (1024)
Q Consensus 316 ~gs~ilvTtR~~~~~~~~~~ 335 (1024)
.|...++.|.++.++..|..
T Consensus 196 ~G~TlVlVTHD~~LA~Rc~R 215 (228)
T COG4181 196 RGTTLVLVTHDPQLAARCDR 215 (228)
T ss_pred cCceEEEEeCCHHHHHhhhh
Confidence 68888888889988887753
No 375
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.81 E-value=0.024 Score=53.67 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 376
>PRK05973 replicative DNA helicase; Provisional
Probab=94.80 E-value=0.15 Score=52.19 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=30.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
...++.|.|.+|+|||++|.+++... ...=..++|++....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC
Confidence 34689999999999999999987632 223345677766554
No 377
>PRK04328 hypothetical protein; Provisional
Probab=94.80 E-value=0.096 Score=54.72 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=31.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF 250 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 250 (1024)
...++.|.|.+|+|||+||.++... ....-...+|++..+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCCH
Confidence 4579999999999999999998763 22334567888876643
No 378
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.77 E-value=0.038 Score=60.55 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=58.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhh----hccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRV----QRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLK 281 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 281 (1024)
..++-+.|||..|.|||.|+-.+|+...+ +-|| .....++-+.+..-...... ...+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--------------h~Fm~~vh~~l~~~~~~~~~----l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--------------HEFMLDVHSRLHQLRGQDDP----LPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccc--------------cHHHHHHHHHHHHHhCCCcc----HHHHH
Confidence 35678999999999999999999985433 2233 23333333333322212222 23444
Q ss_pred HHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC-CCCcEEEEEcCCchh
Q 044195 282 KQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG-APGSKIVVTTRNLRV 329 (1024)
Q Consensus 282 ~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~ 329 (1024)
+.+.++..||.||.+.-.+..+--.+...|..- ..|. |||+|.+...
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPP 169 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCCh
Confidence 556677779999998555443322222222211 2444 5666655443
No 379
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.75 E-value=0.13 Score=57.20 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHHHHHhccCCC-------CCCCcHH----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKSILKSITNDQ-------SKDDDLN---- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~---- 274 (1024)
....++|.|..|+|||||++.++... ..+.++++-+++... ..+++..++..-+... .+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998631 224566666766554 4556666544321111 1111111
Q ss_pred -HHHHHHHHHh--CCCceeEEeecc
Q 044195 275 -WVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 275 -~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
...-.+.+++ +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222344555 689999999999
No 380
>PRK13948 shikimate kinase; Provisional
Probab=94.74 E-value=0.19 Score=49.24 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+.|.++|+.|+||||+++.++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 381
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.73 E-value=0.027 Score=57.35 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+..+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 382
>COG4240 Predicted kinase [General function prediction only]
Probab=94.71 E-value=0.18 Score=49.41 Aligned_cols=83 Identities=16% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhc-----cCCCCCCCcHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSI-----TNDQSKDDDLNWVQEKL 280 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-----~~~~~~~~~~~~~~~~l 280 (1024)
+++-+++|.|+-|+||||++..+++....+.- ..++..+..+-+-..+-.-.++++. ++..++..+..-....+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45789999999999999999999984332222 4666666655544444444555553 22334566777777777
Q ss_pred HHHhCCCce
Q 044195 281 KKQLSGKKF 289 (1024)
Q Consensus 281 ~~~l~~~~~ 289 (1024)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 777777644
No 383
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.71 E-value=0.054 Score=55.90 Aligned_cols=85 Identities=24% Similarity=0.206 Sum_probs=52.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhcc-CCceEEEEecCCCCHHHHHHHHHHhccCC---------------CCC-
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-FQIKAWTFVSEDFNVFRVTKSILKSITND---------------QSK- 269 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~- 269 (1024)
...++.|.|++|+|||++|.+++.. .... =..++||+..++. .++.+.+- .++.+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4569999999999999999998762 2223 3467788765543 33333322 22211 000
Q ss_pred ----CCcHHHHHHHHHHHhCC-CceeEEeecc
Q 044195 270 ----DDDLNWVQEKLKKQLSG-KKFLLVLDDV 296 (1024)
Q Consensus 270 ----~~~~~~~~~~l~~~l~~-~~~LlVlDd~ 296 (1024)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34667777777776654 5579999987
No 384
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.70 E-value=0.044 Score=55.05 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=59.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHH---HHHHHHH-
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWV---QEKLKKQ- 283 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~---~~~l~~~- 283 (1024)
.+++.|.|+.|.||||+.+.++... +..+. ..+|.+.. .. ..+...+...++............ ...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999887421 11111 11221111 01 122223333333221111111111 1112222
Q ss_pred -hCCCceeEEeeccCCCC-HHH----HHHhhcCCCCCCCCcEEEEEcCCchhhhccC
Q 044195 284 -LSGKKFLLVLDDVWNEN-YEY----WSIFSRPFGAGAPGSKIVVTTRNLRVTVNMG 334 (1024)
Q Consensus 284 -l~~~~~LlVlDd~~~~~-~~~----~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~ 334 (1024)
+..++-|+++|...... ..+ ...+...+.. .|..+|+||-+.+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 24568899999984422 111 1122222222 3788999999888776554
No 385
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.62 E-value=0.095 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+.|.|.|.||+||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999987
No 386
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.59 E-value=0.24 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+++|+|+.|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999863
No 387
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.057 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 044195 210 VFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.|.|.|++|+||||+|+.++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 388
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.57 E-value=0.03 Score=56.79 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 389
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.57 E-value=0.17 Score=50.73 Aligned_cols=42 Identities=26% Similarity=0.220 Sum_probs=28.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccC--------CceEEEEecCCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRF--------QIKAWTFVSEDF 250 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~~ 250 (1024)
.++.|+|++|+|||+++.+++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488999999999999999988744332222 367788766653
No 390
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.57 E-value=0.14 Score=53.58 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCC-------CCCCcHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQ-------SKDDDLNWVQE 278 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-------~~~~~~~~~~~ 278 (1024)
.+..+|.|.|.+|+|||||+..+.+ ....... .+.+ ..+..+..+ .+.+...+.+. .-..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4678999999999999999999987 3333332 2222 222222221 11223322211 01123334445
Q ss_pred HHHHHhCCCceeEEeeccC
Q 044195 279 KLKKQLSGKKFLLVLDDVW 297 (1024)
Q Consensus 279 ~l~~~l~~~~~LlVlDd~~ 297 (1024)
.+...-....-++|++++-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5555444445688999984
No 391
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.57 E-value=0.016 Score=51.87 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhcChhhhccCC
Q 044195 211 FSINGMGGVGKTTLAQLVYNDDRVQRRFQ 239 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 239 (1024)
|.|+|.+|+|||++|++++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999997 5555663
No 392
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.54 E-value=0.13 Score=51.82 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=38.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceE-------EEEecCCCCHHHH--HHHHHHhccCCCCC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKA-------WTFVSEDFNVFRV--TKSILKSITNDQSK 269 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-------wv~~~~~~~~~~~--~~~il~~l~~~~~~ 269 (1024)
.++.+|.++||+|+||||..+.++.+...+..-..++ =|....+.++++. .++..++....+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 4567888999999999999999987433222212222 1223334455543 45677776555443
No 393
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.53 E-value=0.26 Score=46.93 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++.|.|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 394
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.17 Score=56.42 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=47.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
...+++++|+.|+||||++..++...........+.++.... .....+-+....+.++.+.....+..++...+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999998876221122223344443322 223344445555555544333333444333332 234
Q ss_pred CCceeEEeecc
Q 044195 286 GKKFLLVLDDV 296 (1024)
Q Consensus 286 ~~~~LlVlDd~ 296 (1024)
+ .-++++|-.
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 345677765
No 395
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.51 E-value=0.11 Score=61.93 Aligned_cols=85 Identities=21% Similarity=0.144 Sum_probs=56.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHH
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKL 280 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (1024)
...+++-|+|++|+||||||.+++.. ....=..++|++....++.. .+++++.+.+ .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 34679999999999999999887652 22333567899887777742 5566654432 123334455555
Q ss_pred HHHhC-CCceeEEeeccC
Q 044195 281 KKQLS-GKKFLLVLDDVW 297 (1024)
Q Consensus 281 ~~~l~-~~~~LlVlDd~~ 297 (1024)
...++ ++.-|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 466799999983
No 396
>PRK06762 hypothetical protein; Provisional
Probab=94.48 E-value=0.028 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 397
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.47 E-value=0.18 Score=52.21 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=30.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
...++.|.|.+|+|||++|.+++.. ....-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 4579999999999999999987752 2223456788876443
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.47 E-value=0.19 Score=56.01 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|.++|++|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 399
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.47 E-value=0.17 Score=51.98 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=31.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
..++.|.|++|+||||+|.+++... .+.. ..++|++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4599999999999999987766532 1222 4556766333 445555555
No 400
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.46 E-value=0.14 Score=53.04 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhh--hccCCceEEEEecCCCC-HHHHHHHHHHhccCCC-------CCCCcHH--
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRV--QRRFQIKAWTFVSEDFN-VFRVTKSILKSITNDQ-------SKDDDLN-- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~-- 274 (1024)
...-++|.|..|+|||+|+..+++.... +.+-+..+++-+++... ..+++.++.+.-.... .......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4457899999999999999998874321 12246788888887654 5666666655321111 1111111
Q ss_pred ---HHHHHHHHHh--C-CCceeEEeeccC
Q 044195 275 ---WVQEKLKKQL--S-GKKFLLVLDDVW 297 (1024)
Q Consensus 275 ---~~~~~l~~~l--~-~~~~LlVlDd~~ 297 (1024)
.....+.+++ + ++++|+++||+-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1223445555 3 789999999993
No 401
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0033 Score=62.95 Aligned_cols=80 Identities=24% Similarity=0.305 Sum_probs=62.6
Q ss_pred hCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccC--cccccCCCCcEEecCCCccccccccc-----cC
Q 044195 589 LLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILP--QSINSLYNLHTVLLEDCRRLKKLCKD-----MG 661 (1024)
Q Consensus 589 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~-----i~ 661 (1024)
..+++.|+||.|+-| .|..+ ..+..+++|+.|+|+.|.|..+- .-+.+|++|++|-|..|.....-+.. +.
T Consensus 37 c~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 378999999999999 78887 45889999999999999998664 34678899999988887554443322 45
Q ss_pred CCCcccEEe
Q 044195 662 NLTKLHHLR 670 (1024)
Q Consensus 662 ~L~~L~~L~ 670 (1024)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 678888876
No 402
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.46 E-value=0.093 Score=57.57 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHHhC--------CCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRD--------GLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.++.++.+..++... ........+.+.++|++|+|||++|+.++.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 44889888888888777541 000011246889999999999999999987
No 403
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.4 Score=48.96 Aligned_cols=94 Identities=21% Similarity=0.231 Sum_probs=53.6
Q ss_pred cccchhhHHHHHHHHHhCC------CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHH
Q 044195 183 VYGREKDKEAIVELLLRDG------LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVT 256 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (1024)
+-|-+..++.|.+...-+- .......+-|.++|++|.||+-||++|+... ...| .++|...
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nSTF-----FSvSSSD------ 201 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NSTF-----FSVSSSD------ 201 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCce-----EEeehHH------
Confidence 5566666666655432211 0012346789999999999999999999843 2333 3444321
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccC
Q 044195 257 KSILKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVW 297 (1024)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~ 297 (1024)
+.....+ +-+.+...+.+.. ++++-+|++|.++
T Consensus 202 --LvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 202 --LVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred --HHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 1111111 1223333333333 5689999999984
No 404
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.44 E-value=0.2 Score=51.55 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCceeEEeeccCC----CCH-HHHHHhhcCCCCCCCCcEEEEEcCCchhhhccC
Q 044195 273 LNWVQEKLKKQLSGKKFLLVLDDVWN----ENY-EYWSIFSRPFGAGAPGSKIVVTTRNLRVTVNMG 334 (1024)
Q Consensus 273 ~~~~~~~l~~~l~~~~~LlVlDd~~~----~~~-~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~ 334 (1024)
-+.....+.+.+..++=++++|.=-. ..+ +.++.+ ..+.. ..|.-||+++-+.+.+...+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll-~~l~~-~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELL-RDLNR-EKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHH-HHHHH-hcCCEEEEEecCHHHHHHhC
Confidence 34445567778888888999997522 111 122222 22221 25677999999988776654
No 405
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.44 E-value=1.4 Score=46.65 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=47.2
Q ss_pred CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhcc-CCccceecCCCChHhHHHHHHh
Q 044195 285 SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVNM-GADQAYQLKELSNDDCLCLLTQ 355 (1024)
Q Consensus 285 ~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~ 355 (1024)
.+++-++|||++..-+...++.+...+.....++.+|++|.+. .+...+ ...+.+++.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3566699999998878788888888787665667666666553 333222 3446777766 66666666654
No 406
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.43 E-value=0.063 Score=52.84 Aligned_cols=21 Identities=48% Similarity=0.637 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 407
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.42 E-value=0.078 Score=49.93 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+..+|.++|.+|.||||+|.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 408
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.42 E-value=0.058 Score=49.40 Aligned_cols=40 Identities=28% Similarity=0.222 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
++..++.+.|.+.- ....+|.+.|.-|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555554432 23358999999999999999999974
No 409
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.41 E-value=0.11 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 410
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.39 E-value=0.03 Score=55.56 Aligned_cols=21 Identities=33% Similarity=0.207 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999884
No 411
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.56 Score=54.14 Aligned_cols=55 Identities=27% Similarity=0.249 Sum_probs=38.3
Q ss_pred ccCccccchhhHH---HHHHHHHhCCCC---CCCCeEEEEEEecCCCcHHHHHHHHhcChh
Q 044195 179 NEAKVYGREKDKE---AIVELLLRDGLR---ADDGFSVFSINGMGGVGKTTLAQLVYNDDR 233 (1024)
Q Consensus 179 ~~~~~vGr~~~~~---~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~ 233 (1024)
.-.+.-|.++.++ +++++|.++... +..-++-|.++|++|+|||.||++++....
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 3345678776554 556666554311 224467889999999999999999998543
No 412
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.39 E-value=0.094 Score=61.26 Aligned_cols=134 Identities=12% Similarity=0.016 Sum_probs=69.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.++|....+.++.+.+.... ....-|.|+|..|+||+.+|+++... ....-...+.++++.-.+ ..+-..+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~--s~r~~~pfv~inca~~~~-~~~e~elFG 277 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLR--SPRGKKPFLALNCASIPD-DVVESELFG 277 (520)
T ss_pred ceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeccccCCH-HHHHHHhcC
Confidence 48998888888877775432 12234889999999999999997652 111223345666655432 111112221
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEcCCc
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTTRNL 327 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~~ 327 (1024)
...+........ ....+. ....-.|+||+++.-.......+...+..+. ...|||.||...
T Consensus 278 ~~~~~~~~~~~~--~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 278 HAPGAYPNALEG--KKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred CCCCCcCCcccC--CCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 111110000000 000010 1223457899997766555555554443221 134788877653
No 413
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.37 E-value=0.13 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+++|.|..|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 414
>PRK06547 hypothetical protein; Provisional
Probab=94.36 E-value=0.036 Score=53.94 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|.|++|+||||+|+.++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999986
No 415
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.34 Score=46.37 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+.|.|+.|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4789999999999999999985
No 416
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.33 E-value=0.098 Score=53.66 Aligned_cols=115 Identities=12% Similarity=0.183 Sum_probs=63.0
Q ss_pred ccccchhhHHHHHHHHHhCC-CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDG-LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.++|-.-.++.++..+.+-- .+....+-+++++|.+|+||.-.++.++++-.....-. .......
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHhh
Confidence 35665555555554443321 11345678999999999999999999987431111000 0111111
Q ss_pred HhccCCCCCCCcHH----HHHHHHHHHhC-CCceeEEeeccCCCCHHHHHHhhcCCC
Q 044195 261 KSITNDQSKDDDLN----WVQEKLKKQLS-GKKFLLVLDDVWNENYEYWSIFSRPFG 312 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~----~~~~~l~~~l~-~~~~LlVlDd~~~~~~~~~~~l~~~~~ 312 (1024)
....-+ ....++ ++..++++.++ -+|-|+|||+++.-...-.+.+...+.
T Consensus 149 at~hFP--~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLHFP--HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhccCC--ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 111111 222222 33444444443 378999999997766666666655444
No 417
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.32 E-value=0.048 Score=55.28 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 189 DKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 189 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
+..++.+.+.... ++..+|+|+|+||.|||||..++....+.+.+=-.++-|+=+.+++--.++.
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 4445666665432 4568999999999999999999887433322222444555555665544443
No 418
>PRK08149 ATP synthase SpaL; Validated
Probab=94.30 E-value=0.15 Score=56.69 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=51.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCC-------CCCCcH-----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQ-------SKDDDL----- 273 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~-------~~~~~~----- 273 (1024)
....++|+|..|+|||||+..++... .-+.+++..+.. ..+..++..+......... .+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 34688999999999999999998732 223334444543 3345566666655322111 111111
Q ss_pred HHHHHHHHHHh--CCCceeEEeecc
Q 044195 274 NWVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 274 ~~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
......+.+++ +++.+||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 12223344444 689999999999
No 419
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.29 E-value=0.002 Score=62.72 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=71.9
Q ss_pred hhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCc
Q 044195 586 LQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTK 665 (1024)
Q Consensus 586 ~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 665 (1024)
...+..++..++||++.| .+..+-..++.+..|..|+++.|.+..+|..++.+..+..+++..| .....|.+.++++.
T Consensus 35 v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPH 112 (326)
T ss_pred hhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCC
Confidence 344567788888888888 5766767777788888888888888888888888888888888876 77888888888888
Q ss_pred ccEEeccCCc
Q 044195 666 LHHLRNSNVH 675 (1024)
Q Consensus 666 L~~L~l~~~~ 675 (1024)
+++++.-++.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 8888888776
No 420
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.28 E-value=0.14 Score=52.98 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChh-hhccC-------CceEEEEecC-CCCHHHHHHHHH
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDR-VQRRF-------QIKAWTFVSE-DFNVFRVTKSIL 260 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~f-------~~~~wv~~~~-~~~~~~~~~~il 260 (1024)
-+-|.+++..+ -++.|+|.+|+|||||+...+-..- -++-| ..+++|++.. ..++.+-++.+.
T Consensus 79 P~lId~~fr~g--------~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~ 150 (402)
T COG3598 79 PQLIDEFFRKG--------YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVR 150 (402)
T ss_pred hhhhhHHhhcC--------eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHH
Confidence 34556666433 4667789999999999977653211 12223 3577888764 446777788888
Q ss_pred HhccCCC
Q 044195 261 KSITNDQ 267 (1024)
Q Consensus 261 ~~l~~~~ 267 (1024)
.+++.++
T Consensus 151 a~mgLsP 157 (402)
T COG3598 151 ARMGLSP 157 (402)
T ss_pred HHcCCCh
Confidence 8887665
No 421
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.28 E-value=0.3 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|.|+.|.|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999986
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.27 E-value=0.04 Score=66.86 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++.|+|+.|.||||+.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347999999999999999999875
No 423
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.27 E-value=0.41 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|.|..|.|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 424
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.11 Score=50.04 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=60.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC--CHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF--NVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (1024)
.+++|+|..|.|||||++.++... ....+.+++...... ..... ...++-... -..-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 689999999999999999999732 234455554322111 11111 111111100 11122233345566666
Q ss_pred CceeEEeeccCCC-CHHHHHHhhcCCCCC-CCCcEEEEEcCCchhhhc
Q 044195 287 KKFLLVLDDVWNE-NYEYWSIFSRPFGAG-APGSKIVVTTRNLRVTVN 332 (1024)
Q Consensus 287 ~~~LlVlDd~~~~-~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~~~~ 332 (1024)
.+-++++|+.-.. +......+...+... ..+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7889999997432 222222222222211 124568888877655443
No 425
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.24 E-value=0.18 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999873
No 426
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.35 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcCh
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDD 232 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~ 232 (1024)
..+.+|-||.|+||||||..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999998764
No 427
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.20 E-value=0.042 Score=56.43 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 191 EAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 191 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.+++..+... .++..+|+|+|.||+|||||..++....+.+.+=-.++-|+-|++++--.++.+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 3455555443 357789999999999999999998875444444445666666777665444443
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.19 E-value=0.22 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..|++|.|++|+|||||.+-+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35999999999999999999875
No 429
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.17 E-value=0.22 Score=56.69 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=47.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+.. .++. .-++.++...+ ...+.+.+...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~--~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESA--SQIK-LRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccH--HHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 3569999999999999999999873 22223457788765433 2322 22344443211 1123333333332
Q ss_pred HHhCCCceeEEeecc
Q 044195 282 KQLSGKKFLLVLDDV 296 (1024)
Q Consensus 282 ~~l~~~~~LlVlDd~ 296 (1024)
+.+.-++|+|.+
T Consensus 154 ---~~~~~lVVIDSI 165 (446)
T PRK11823 154 ---EEKPDLVVIDSI 165 (446)
T ss_pred ---hhCCCEEEEech
Confidence 235567888877
No 430
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.23 Score=55.45 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=52.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHHHHHhccCCC-------CCCCcHH----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKSILKSITNDQ-------SKDDDLN---- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~---- 274 (1024)
....++|.|..|+|||||++.+++.. ..+..+++-+++... ..++..+.+..-+... .+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 44688999999999999999998732 124555666666554 4455555554322111 1111111
Q ss_pred -HHHHHHHHHh--CCCceeEEeecc
Q 044195 275 -WVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 275 -~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
...-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1222344555 689999999999
No 431
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.17 E-value=0.29 Score=55.83 Aligned_cols=54 Identities=20% Similarity=0.054 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
+..+.+.|... =....++.|.|.+|+|||||+.+++... ...-..++|++..+.
T Consensus 80 i~~LD~vLgGG----i~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 80 FGELDRVLGGG----IVPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES 133 (454)
T ss_pred cHHHHHHhcCC----ccCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC
Confidence 44555555322 1345799999999999999999997632 222235778876543
No 432
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.15 E-value=0.025 Score=33.51 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=18.3
Q ss_pred ceEEEEeCCCCCcccCCccccCC
Q 044195 594 RLRVFSLCGYCNIIDLPNEIGNL 616 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~l~~l 616 (1024)
+|++|||++| .++.+|..+++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 899999877654
No 433
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.15 E-value=0.18 Score=56.26 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=49.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhcc-------CCCCCCCc----HHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSIT-------NDQSKDDD----LNW 275 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-------~~~~~~~~----~~~ 275 (1024)
....++|+|..|+|||||++.++.... ....+++....+..++.++....+...- .+.+...- ...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345899999999999999998886321 2223444433234455544444433221 11111111 111
Q ss_pred HHHHHHHHh--CCCceeEEeecc
Q 044195 276 VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 276 ~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
....+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344454 589999999999
No 434
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.61 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
-|--.++||||+|||+++.++++.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhh
Confidence 356679999999999999999983
No 435
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.12 E-value=0.14 Score=56.41 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=58.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
..|.|.|+.|+||||++..+.. .+.......++. +.++.... ... ...+........+.......++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~~--~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEYV--HRN-KRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhhh--ccC-ccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 6899999999999999999886 233334444443 22221110 000 00000011111112234556777888899
Q ss_pred eeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 289 FLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
=.|++|.+.+ .+.+.....+ ...|..|+.|.-..
T Consensus 197 d~i~vgEird--~~~~~~~l~a---a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 197 DVILIGEMRD--LETVELALTA---AETGHLVFGTLHTN 230 (343)
T ss_pred CEEEEeCCCC--HHHHHHHHHH---HHcCCcEEEEEcCC
Confidence 9999999954 3444442222 12455555555543
No 436
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.12 E-value=0.097 Score=50.80 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.3
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 044195 211 FSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~ 230 (1024)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 437
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.12 E-value=0.062 Score=56.80 Aligned_cols=42 Identities=26% Similarity=0.165 Sum_probs=35.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
+..+++.|+|.+|+|||++|.++.. +.......++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4668999999999999999999998 55566888999987764
No 438
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.11 E-value=0.18 Score=56.29 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=49.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCC-------CCCCcHH----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQ-------SKDDDLN---- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~-------~~~~~~~---- 274 (1024)
....++|.|..|+|||||++.++.... . +..+.+.++. .....++..+.+..-+... .+.....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 345899999999999999998887322 1 2223333333 3345555555544322111 1111111
Q ss_pred -HHHHHHHHHh--CCCceeEEeecc
Q 044195 275 -WVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 275 -~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
.....+.+++ +++.+|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1222345555 679999999999
No 439
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.11 E-value=0.15 Score=59.98 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=62.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccC---CceEEEEecCCCCHHHHHHHHHHhccC---CCCC----CCcHHHHHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRF---QIKAWTFVSEDFNVFRVTKSILKSITN---DQSK----DDDLNWVQE 278 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~il~~l~~---~~~~----~~~~~~~~~ 278 (1024)
++..|.|.+|+||||++..+... ..... ...+.+......-..++...+...+.. .... ......+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 68999999999999999888762 22211 234555554444444444444322211 1000 011112222
Q ss_pred HHHHHh--------CCCc---eeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 279 KLKKQL--------SGKK---FLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 279 ~l~~~l--------~~~~---~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
.+.... ++.+ -++|+|.+.--+......+..+++ +++|+|+---..+.
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL 304 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQL 304 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhc
Confidence 221110 1111 389999986555556666766666 56788887765544
No 440
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.10 E-value=0.21 Score=59.48 Aligned_cols=87 Identities=20% Similarity=0.140 Sum_probs=52.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC--HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN--VFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
.++++++|+.|+||||.+..++...........+..++.. .+. ..+.++...+.++.+.....+...+...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999999998732211111234444433 333 4556666666666554444455555554543 34
Q ss_pred CCceeEEeeccC
Q 044195 286 GKKFLLVLDDVW 297 (1024)
Q Consensus 286 ~~~~LlVlDd~~ 297 (1024)
++ -+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 43 477888764
No 441
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.09 E-value=0.86 Score=47.24 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=74.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.|+|-.. ..++..++.... ...+.+.++|+.|+|||+-++.+++. .+..+.+..+..+....++..+..
T Consensus 73 ~~l~tkt-~r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~ 141 (297)
T COG2842 73 DFLETKT-VRRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICA 141 (297)
T ss_pred cccccch-hHhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHH
Confidence 4666433 334444443332 23348899999999999999999973 233444556666777777766666
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcC
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRP 310 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~ 310 (1024)
....... .........+...+++..-+++.|+...-....++.+...
T Consensus 142 ~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 142 AAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred HHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHH
Confidence 6554432 3344455566666788999999999976666666666543
No 442
>PRK03839 putative kinase; Provisional
Probab=94.07 E-value=0.035 Score=54.93 Aligned_cols=21 Identities=43% Similarity=0.759 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999997
No 443
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.07 E-value=0.22 Score=55.58 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=51.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC-CHHHHHHHHHHhccCC-------CCCCCcHHH---
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF-NVFRVTKSILKSITND-------QSKDDDLNW--- 275 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~--- 275 (1024)
....++|.|..|+|||||++.++... +.+..+++.+++.. ...+++.+....-... .........
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44688999999999999999998732 23445666565543 4445555543311000 011111111
Q ss_pred --HHHHHHHHh--CCCceeEEeecc
Q 044195 276 --VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 276 --~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
..-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122344555 678999999999
No 444
>PRK04040 adenylate kinase; Provisional
Probab=94.06 E-value=0.041 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 445
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.23 Score=52.62 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRF 238 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f 238 (1024)
.+-|.++|++|.|||-||++++. +....|
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Ak--eaga~f 155 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAK--EAGANF 155 (386)
T ss_pred CccceecCCCCchHHHHHHHHHH--HcCCCc
Confidence 46788999999999999999998 555566
No 446
>PF13479 AAA_24: AAA domain
Probab=94.04 E-value=0.15 Score=51.79 Aligned_cols=31 Identities=29% Similarity=0.244 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
-.+.|+|.+|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46899999999999999666 44556655443
No 447
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.04 E-value=0.042 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|+|.|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 448
>PF13245 AAA_19: Part of AAA domain
Probab=94.03 E-value=0.076 Score=43.44 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=16.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+++.|.|++|.|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788899999999955544443
No 449
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.00 E-value=0.43 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 450
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.00 E-value=0.21 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 451
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.99 E-value=0.12 Score=58.11 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=56.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC-CHHHHHHHHHHhccCCC-------CCCCcH-----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF-NVFRVTKSILKSITNDQ-------SKDDDL----- 273 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~----- 273 (1024)
...-++|.|.+|+|||||+.++++... +.+-+.++++-+++.. ...+++.++...-.... .+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 446789999999999999999887432 2245677777777654 34566666654321111 111111
Q ss_pred HHHHHHHHHHh---CCCceeEEeecc
Q 044195 274 NWVQEKLKKQL---SGKKFLLVLDDV 296 (1024)
Q Consensus 274 ~~~~~~l~~~l---~~~~~LlVlDd~ 296 (1024)
......+.+++ +++.+|+++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12233455665 389999999999
No 452
>PRK00625 shikimate kinase; Provisional
Probab=93.98 E-value=0.037 Score=53.82 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|.|+|++|+||||+++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 453
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=0.75 Score=48.46 Aligned_cols=131 Identities=10% Similarity=0.014 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh-----------ccCCceEEEEecCCCCHHHHHHH
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ-----------RRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-----------~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
-+++...+... .-.....++|+.|+||+++|.+++...--. ...+...|+.-...
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~--------- 71 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK--------- 71 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---------
Confidence 34555555432 334577899999999999999887621100 00111111110000
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC-chhhhc
Q 044195 259 ILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN-LRVTVN 332 (1024)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~~~ 332 (1024)
...-.++++ +.+.+.+ .++.=++|+|++..-+.+.++.+...+.....++.+|++|.. ..+...
T Consensus 72 ---------~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 72 ---------GRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ---------CCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 000123332 2233333 345568999999887778888888777766566666666655 333322
Q ss_pred -cCCccceecCCC
Q 044195 333 -MGADQAYQLKEL 344 (1024)
Q Consensus 333 -~~~~~~~~l~~L 344 (1024)
....+.+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 233456666655
No 454
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.95 E-value=0.2 Score=48.82 Aligned_cols=119 Identities=16% Similarity=0.028 Sum_probs=60.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEe---cCCCCHHHHHHHHH--Hh--ccCCC-----CCCCc--
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFV---SEDFNVFRVTKSIL--KS--ITNDQ-----SKDDD-- 272 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~il--~~--l~~~~-----~~~~~-- 272 (1024)
....|.|+|..|-||||.|...+. +...+=-.+..+-. .........++.+- .- .+... +...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346899999999999999988876 32222112222222 21233344443320 00 01110 00011
Q ss_pred -HHHHHHHHHHHhCC-CceeEEeeccCC---CCHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 273 -LNWVQEKLKKQLSG-KKFLLVLDDVWN---ENYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 273 -~~~~~~~l~~~l~~-~~~LlVlDd~~~---~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
........++.+.+ +--++|||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223344455544 455999999822 11112334444444444667999999975
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.94 E-value=0.47 Score=49.68 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=49.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC-CHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC-
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF-NVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS- 285 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~- 285 (1024)
..+++++|.+|+||||++..+... ....=..+.+++..... ....-++...+.++.+.....+...+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 369999999999999999988762 22221234455544221 22333334444443332222344455444433322
Q ss_pred CCceeEEeeccCC
Q 044195 286 GKKFLLVLDDVWN 298 (1024)
Q Consensus 286 ~~~~LlVlDd~~~ 298 (1024)
.+.-++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 3456889998744
No 456
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.91 E-value=0.063 Score=56.63 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 191 EAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 191 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++.+... .+-|.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhc
Confidence 3455555543 25779999999999999999876
No 457
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.38 Score=49.72 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.+++|.|+.|.|||||.+.++.-
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999863
No 458
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.84 E-value=0.34 Score=52.41 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+++|.|+.|.|||||.+.++..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 459
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.82 E-value=0.22 Score=56.45 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=46.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSG 286 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (1024)
.+|++++|+.|+||||++..++.....+..-..+..++... .....+-++...+.++.+.....+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987322222122344554432 12233444444555443332222222222222 22344
Q ss_pred CceeEEeeccC
Q 044195 287 KKFLLVLDDVW 297 (1024)
Q Consensus 287 ~~~LlVlDd~~ 297 (1024)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 477788763
No 460
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.81 E-value=0.04 Score=30.19 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=6.2
Q ss_pred CCcEeeccCCCccccC
Q 044195 618 HLRFLNLSRTNIQILP 633 (1024)
Q Consensus 618 ~L~~L~L~~~~i~~lp 633 (1024)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 461
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.79 E-value=0.24 Score=55.49 Aligned_cols=89 Identities=19% Similarity=0.168 Sum_probs=55.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC-CHHHHHHHHHHhccCCC-------CCCCcHH----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF-NVFRVTKSILKSITNDQ-------SKDDDLN---- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~---- 274 (1024)
...-++|.|.+|+|||||+.+++..... .+=+.++++-+++.. ...+++.++...-.... .+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4467899999999999999988763221 111356677777654 45666666665321111 1111111
Q ss_pred -HHHHHHHHHh---CCCceeEEeecc
Q 044195 275 -WVQEKLKKQL---SGKKFLLVLDDV 296 (1024)
Q Consensus 275 -~~~~~l~~~l---~~~~~LlVlDd~ 296 (1024)
...-.+.+++ +++.+||++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 2233455665 679999999999
No 462
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.041 Score=53.66 Aligned_cols=24 Identities=46% Similarity=0.560 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+|+|-||-|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999983
No 463
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.77 E-value=0.092 Score=61.91 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=54.8
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|.+..++.+...+... +.+.|+|++|+||||+|+.++... ....++..+|..- ...+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45889988888887766432 478999999999999999998732 2334577778655 3446677777777
Q ss_pred HhccC
Q 044195 261 KSITN 265 (1024)
Q Consensus 261 ~~l~~ 265 (1024)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 76654
No 464
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.77 E-value=0.16 Score=54.81 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 044195 211 FSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~ 230 (1024)
+.+.|++|.||||+++.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999986
No 465
>PRK06217 hypothetical protein; Validated
Probab=93.76 E-value=0.089 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 044195 210 VFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999973
No 466
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.76 E-value=0.15 Score=53.52 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 044195 211 FSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~ 230 (1024)
|.++|++|+||||+|++++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 467
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.75 E-value=0.31 Score=50.61 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=50.2
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHhcChhhhccCCce-EEEEecCCCC-HHHHHHHHHHhccCC--------CCCCCcHH-
Q 044195 207 GFSVFSINGMGGVGKTTLA-QLVYNDDRVQRRFQIK-AWTFVSEDFN-VFRVTKSILKSITND--------QSKDDDLN- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~il~~l~~~--------~~~~~~~~- 274 (1024)
+..-++|.|.+|+|||+|| ..+.+. ..-+.+ +++-+++... ..++.+++.+.-... .++.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4457899999999999996 555541 123444 6676776543 555666555432111 11111111
Q ss_pred ---HHHHHHHHHh--CCCceeEEeeccC
Q 044195 275 ---WVQEKLKKQL--SGKKFLLVLDDVW 297 (1024)
Q Consensus 275 ---~~~~~l~~~l--~~~~~LlVlDd~~ 297 (1024)
...-.+.+++ +++.+|+|+||+-
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 1122333443 5799999999993
No 468
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.73 E-value=0.12 Score=56.73 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=63.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.++|+++.+..+...+... +.+.+.|++|+|||+||+.++. ... ...++|.+.......+++....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCchhH
Confidence 3788888888776666543 4689999999999999999997 333 33456666666666665433322
Q ss_pred hccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcC
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRP 310 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~ 310 (1024)
....... ....+. ..-+.++++|.++.........+...
T Consensus 92 ~~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~ 135 (329)
T COG0714 92 AALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEA 135 (329)
T ss_pred hhhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHH
Confidence 2110000 000000 11115999999988665554444433
No 469
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.71 E-value=0.39 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|.|+.|.|||||++.++.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999999986
No 470
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.41 Score=48.73 Aligned_cols=56 Identities=27% Similarity=0.204 Sum_probs=41.1
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF 238 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f 238 (1024)
.++=|-+..+++|.+...-+-.. +-..++-|.++|.+|.|||-||++|+| +....|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhh
Confidence 34667888888888776433211 223567889999999999999999999 555555
No 471
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.70 E-value=0.35 Score=54.28 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=54.7
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHhcChhhh-----ccCCceEEEEecCCCCHHHHHHHHHHhccC-CC--------CCCC
Q 044195 207 GFSVFSINGMGGVGKTTLA-QLVYNDDRVQ-----RRFQIKAWTFVSEDFNVFRVTKSILKSITN-DQ--------SKDD 271 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~--------~~~~ 271 (1024)
...-++|.|..|+|||+|| ..+.+...+. ..-...+++.+++..+...-+.+.+++-+. .. ++..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 5566633221 233567888888876654445555554431 11 1111
Q ss_pred cHH----HHHHHHHHHh--CCCceeEEeeccC
Q 044195 272 DLN----WVQEKLKKQL--SGKKFLLVLDDVW 297 (1024)
Q Consensus 272 ~~~----~~~~~l~~~l--~~~~~LlVlDd~~ 297 (1024)
-.. .....+.+++ +++.+|+|+||+-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 1122344444 5799999999993
No 472
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.42 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+++|+|+.|+|||||++.++.-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 369999999999999999999874
No 473
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.65 E-value=0.13 Score=58.30 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc-cCCce-EEEEecCCCC-HHHHHHHHHHhccC-CC
Q 044195 192 AIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR-RFQIK-AWTFVSEDFN-VFRVTKSILKSITN-DQ 267 (1024)
Q Consensus 192 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~-~wv~~~~~~~-~~~~~~~il~~l~~-~~ 267 (1024)
+++++|..- +...-..|+|++|+|||||++.+++ .+.. +-+.. +++-+.+... ..++.+.+=.++.. ..
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~ 477 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF 477 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECC
Confidence 445555432 3456789999999999999999998 3322 22333 2444555433 33333332111111 11
Q ss_pred CCCCc----HHHHHHHHHHHh--CCCceeEEeecc
Q 044195 268 SKDDD----LNWVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 268 ~~~~~----~~~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
+.... ...+.-.+.+++ .++.+||++|++
T Consensus 478 D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 478 DRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11111 122233344555 689999999999
No 474
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.64 E-value=0.11 Score=46.51 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.-++.|.+.+... ....+-|++++|++|+|||.+++.+++.
T Consensus 36 ~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 36 VVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4445555566443 3456789999999999999999988874
No 475
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.62 E-value=0.53 Score=50.46 Aligned_cols=49 Identities=22% Similarity=0.139 Sum_probs=36.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKSI 259 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 259 (1024)
....++|.|..|+|||+|++++++. .+-+.++++-+++..+ ..+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~----~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKY----SNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhC----CCCCEEEEEEeCCChHHHHHHHHHH
Confidence 4458999999999999999999983 2335688888887654 45555554
No 476
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.61 E-value=0.17 Score=58.68 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++|....++++.+.+..-. ....-|.|.|..|+||+.+|+.+++
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~ 257 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQ 257 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHH
Confidence 48999988888888775542 2335789999999999999999986
No 477
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.59 E-value=0.64 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 478
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.59 E-value=0.24 Score=59.97 Aligned_cols=130 Identities=18% Similarity=0.120 Sum_probs=70.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.++|....+.++.+.+.... ....-|.|+|..|+||+++|+.+.+.. ...-..-+.|+++.-.. ..+..+++.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~~-~~~~~elfg 398 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYPD-EALAEEFLG 398 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCCh-HHHHHHhcC
Confidence 47888888888877776542 122347899999999999999998732 11112334455554332 223333333
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEcCC
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTTRN 326 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~ 326 (1024)
......... ... .+ -....=.|+||++..-.......+...+..+. ...+||.||..
T Consensus 399 ~~~~~~~~~-~~g----~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 399 SDRTDSENG-RLS----KF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCcCccCC-CCC----ce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 221110000 000 00 01234469999997766656666655443221 13467777664
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.57 E-value=0.43 Score=51.32 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=49.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCC-------CCCCCcHH-----
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITND-------QSKDDDLN----- 274 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~-------~~~~~~~~----- 274 (1024)
...++|.|..|+|||||++.++.... -+..+..-++. ..+..++.......-+.. ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987322 23344444443 345555555555432211 11111111
Q ss_pred HHHHHHHHHh--CCCceeEEeecc
Q 044195 275 WVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 275 ~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
...-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222334444 689999999998
No 480
>PRK15453 phosphoribulokinase; Provisional
Probab=93.57 E-value=0.37 Score=50.06 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=42.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC--CCHHHHHHHHH--Hhc--cCCC--CCCCcHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED--FNVFRVTKSIL--KSI--TNDQ--SKDDDLNWVQE 278 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il--~~l--~~~~--~~~~~~~~~~~ 278 (1024)
...+|+|.|.+|+||||+|+++.. ..+..=...+.++...- ++..+.-..+. +.- .-+. ++..+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 457999999999999999999885 22211112333433321 12222222111 111 1122 45567777777
Q ss_pred HHHHHhCC
Q 044195 279 KLKKQLSG 286 (1024)
Q Consensus 279 ~l~~~l~~ 286 (1024)
.++.+.++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776553
No 481
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.55 E-value=0.18 Score=51.79 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=41.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC--CCHHHHHHHHHH----hccCCC--CCCCcHHHHHHHHH
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED--FNVFRVTKSILK----SITNDQ--SKDDDLNWVQEKLK 281 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~----~l~~~~--~~~~~~~~~~~~l~ 281 (1024)
+|+|.|.+|+||||+|+++.. ..+..=..+..++...- .+-...-..+.. ...-+. ++..+.+.+...++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998886 22221112333432221 111222111111 122222 45667777777777
Q ss_pred HHhCCCc
Q 044195 282 KQLSGKK 288 (1024)
Q Consensus 282 ~~l~~~~ 288 (1024)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7766543
No 482
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.55 E-value=0.45 Score=49.71 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=35.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS 262 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (1024)
...++.|.|.+|+|||++|.+++.+.... +=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHHHH
Confidence 44699999999999999999987643222 123566776554 444555555443
No 483
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.54 E-value=0.11 Score=51.54 Aligned_cols=45 Identities=29% Similarity=0.290 Sum_probs=29.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHH
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (1024)
.|+|+|-||+||||+|..++.. -...+=..+.-|++..++++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~~~ 46 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLPEA 46 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChHHh
Confidence 5899999999999999885542 22222134556676666665443
No 484
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.53 E-value=0.056 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|.|+|++|+||||+|++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999997
No 485
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.51 E-value=0.47 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..+++|.|+.|+|||||++.++.-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999863
No 486
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.49 E-value=0.25 Score=53.73 Aligned_cols=89 Identities=17% Similarity=0.097 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCcHHH-HHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTT-LAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTt-La~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (1024)
+.++|.++|+.|+|||| ||+.++.-. ....=..+..++... .....+-++..++-++.+-....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 36899999999999995 555554411 112223455665443 23456666667777776655555565555555432
Q ss_pred CCCceeEEeeccCC
Q 044195 285 SGKKFLLVLDDVWN 298 (1024)
Q Consensus 285 ~~~~~LlVlDd~~~ 298 (1024)
++. -+|.+|-+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 333 4667777643
No 487
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.48 E-value=0.22 Score=58.57 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=59.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccC----CceEEEEecCCCCHHHHHHHHHHhccC---C-------CCCCCcHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRF----QIKAWTFVSEDFNVFRVTKSILKSITN---D-------QSKDDDLN 274 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~il~~l~~---~-------~~~~~~~~ 274 (1024)
++..|.|.+|+||||++..+..- ..... ...+-+.+....-..++...+-..... . .....++.
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~--l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiH 238 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLA--LVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIH 238 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH--HHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhh
Confidence 68999999999999999888752 22111 123444443333333333333222110 0 00011111
Q ss_pred HHHHHHH-----HHhCCC---ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 275 WVQEKLK-----KQLSGK---KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 275 ~~~~~l~-----~~l~~~---~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
.+..... .+-.+. --+||+|.+.--+...+..+..+++ .++|+|+.--..+.
T Consensus 239 rlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~~QL 298 (586)
T TIGR01447 239 RLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDKNQL 298 (586)
T ss_pred hhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcC---CCCEEEEECChhhC
Confidence 1110000 000111 1289999996666666677766665 56788887765444
No 488
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.45 E-value=0.12 Score=55.42 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=33.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
.+++.+.|.||+||||+|.+.+- ........++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 37999999999999999999765 3333334466776666555555543
No 489
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.44 E-value=0.049 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 490
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.41 E-value=0.24 Score=55.18 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=52.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHHHHHhccCCC-------CCCCcHH----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKSILKSITNDQ-------SKDDDLN---- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~---- 274 (1024)
....++|.|..|+|||||...+++.. .-+.++++-+++... ..++....+..-+... .+.....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999999999842 235677777776653 4444444333211110 1111111
Q ss_pred -HHHHHHHHHh--CCCceeEEeecc
Q 044195 275 -WVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 275 -~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
...-.+.+++ +++.+|+++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344554 689999999999
No 491
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.40 E-value=0.052 Score=53.38 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|.+|+||||+|+.++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 492
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.40 E-value=0.3 Score=49.01 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..|+|.|..|+||||+|+.++..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 493
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.40 E-value=0.37 Score=62.12 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.++-|.++|++|+|||.||+++|.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999985
No 494
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.39 E-value=0.069 Score=65.12 Aligned_cols=176 Identities=14% Similarity=0.140 Sum_probs=83.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhh--hccC-----------CceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRV--QRRF-----------QIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDL 273 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~~~f-----------~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 273 (1024)
..+++.|+|+.+.||||+.+.+.-..-. ...| -..++..++...++..-+..+.. ..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~----------~m 395 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSG----------HM 395 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHH----------HH
Confidence 4578999999999999999988642100 0001 11223333332222211111111 01
Q ss_pred HHHHHHHHHHhCCCceeEEeeccCCCC-HHHHHHh----hcCCCCCCCCcEEEEEcCCchhhhccCCccc---eecCCCC
Q 044195 274 NWVQEKLKKQLSGKKFLLVLDDVWNEN-YEYWSIF----SRPFGAGAPGSKIVVTTRNLRVTVNMGADQA---YQLKELS 345 (1024)
Q Consensus 274 ~~~~~~l~~~l~~~~~LlVlDd~~~~~-~~~~~~l----~~~~~~~~~gs~ilvTtR~~~~~~~~~~~~~---~~l~~L~ 345 (1024)
..... +...+ ..+-|+++|..-... ..+-..+ ...+. ..|+.+|+||...++......... ..+. +
T Consensus 396 ~~~~~-Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~- 469 (782)
T PRK00409 396 TNIVR-ILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-F- 469 (782)
T ss_pred HHHHH-HHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-E-
Confidence 11111 12222 477899999985432 2222222 22222 247799999998776544332111 1111 1
Q ss_pred hHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHH
Q 044195 346 NDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVL 407 (1024)
Q Consensus 346 ~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l 407 (1024)
+.+......+...|. . -...|-.|++++ |+|-.+..-|..+... +......++
T Consensus 470 d~~~l~~~Ykl~~G~---~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li 522 (782)
T PRK00409 470 DEETLRPTYRLLIGI---P----GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELI 522 (782)
T ss_pred ecCcCcEEEEEeeCC---C----CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHH
Confidence 111111111111111 1 124566677776 6887777777766554 233444444
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.39 E-value=0.047 Score=55.02 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 496
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.39 E-value=0.078 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 457999999999999999999987
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.37 E-value=0.061 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|++|+||||+++.++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999886
No 498
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.37 E-value=0.062 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++|.+.|++|+||||+|+++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 499
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.33 E-value=0.2 Score=55.90 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=51.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCC--------CCCCC----cH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITND--------QSKDD----DL 273 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~--------~~~~~----~~ 273 (1024)
....++|.|..|+|||||+..++..... ...++. -+++ .....++++..+..-+.. .+... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 4468899999999999999999874321 122333 2333 355666666555442211 11111 11
Q ss_pred HHHHHHHHHHh--CCCceeEEeeccCC
Q 044195 274 NWVQEKLKKQL--SGKKFLLVLDDVWN 298 (1024)
Q Consensus 274 ~~~~~~l~~~l--~~~~~LlVlDd~~~ 298 (1024)
......+.+++ +++++|+++||+-.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 12223344444 57999999999943
No 500
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.33 E-value=0.064 Score=50.46 Aligned_cols=20 Identities=45% Similarity=0.757 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 044195 210 VFSINGMGGVGKTTLAQLVY 229 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~ 229 (1024)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
Done!